LOCUS       020_IIG_Bs22_SNP     3716900 bp    DNA     circular UNA 12-JAN-2021
DEFINITION  Bacillus subtilis strain Delta6 (hybrid trycycler assembly).
ACCESSION   urn.local...1dn-cvskbta
VERSION     urn.local...1dn-cvskbta
KEYWORDS    .
SOURCE      
  ORGANISM  .
FEATURES             Location/Qualifiers
     S_feature       complement(3716790..658)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_299_1067_c"
                     /HighExp="S4, LoTm, S3, C30, S5, S7, S6, T5.0H, S8,
                     M9-stat"
                     /AntisenseName="dnaA"
                     /AntisenseCor="-0.57810076860528403"
                     /AntisenseRegPval="-24.7"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigEF"
                     /TUshortPSig="0.992"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S4"
     CDS             1..1341
                     /gene="dnaA"
                     /locus_tag="BSU_00010"
                     /old_locus_tag="BSU00010"
                     /function="16.9: Replicate"
                     /experiment="publication(s) with functional evidences,
                     PMID:2167836, 2846289, 12682299, 16120674, 1779750,
                     28166228"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 2167836, 2846289,
                     12682299, 16120674, 1779750, 28166228; Product type f :
                     factor"
                     /codon_start=1
                     /transl_table=11
                     /product="chromosomal replication initiator informational
                     ATPase"
                     /protein_id="NP_387882.1"
                     /db_xref="EnsemblGenomes-Gn:BSU00010"
                     /db_xref="EnsemblGenomes-Tr:CAB11777"
                     /db_xref="GOA:P05648"
                     /db_xref="InterPro:IPR001957"
                     /db_xref="InterPro:IPR003593"
                     /db_xref="InterPro:IPR010921"
                     /db_xref="InterPro:IPR013159"
                     /db_xref="InterPro:IPR013317"
                     /db_xref="InterPro:IPR018312"
                     /db_xref="InterPro:IPR020591"
                     /db_xref="InterPro:IPR024633"
                     /db_xref="InterPro:IPR027417"
                     /db_xref="PDB:4TPS"
                     /db_xref="SubtiList:BG10065"
                     /db_xref="UniProtKB/Swiss-Prot:P05648"
                     /translation="MENILDLWNQALAQIEKKLSKPSFETWMKSTKAHSLQGDTLTIT
                     APNEFARDWLESRYLHLIADTIYELTGEELSIKFVIPQNQDVEDFMPKPQVKKAVKED
                     TSDFPQNMLNPKYTFDTFVIGSGNRFAHAASLAVAEAPAKAYNPLFIYGGVGLGKTHL
                     MHAIGHYVIDHNPSAKVVYLSSEKFTNEFINSIRDNKAVDFRNRYRNVDVLLIDDIQF
                     LAGKEQTQEEFFHTFNTLHEESKQIVISSDRPPKEIPTLEDRLRSRFEWGLITDITPP
                     DLETRIAILRKKAKAEGLDIPNEVMLYIANQIDSNIRELEGALIRVVAYSSLINKDIN
                     ADLAAEALKDIIPSSKPKVITIKEIQRVVGQQFNIKLEDFKAKKRTKSVAFPRQIAMY
                     LSREMTDSSLPKIGEEFGGRDHTTVIHAHEKISKLLADDEQLQQHVKEIKEQLK*"
                     /label="dnaA CDS"
     gene            1..1341
                     /gene="dnaA"
                     /locus_tag="BSU_00010"
                     /old_locus_tag="BSU00010"
                     /label="dnaA gene"
     promotor_-10    complement(631..649)
                     /Source="Nicolas_upshift_promotors"
                     /id="U3"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.992007992007992"
                     /psig="0.992007992007992"
                     /xcortree=1004
                     /SigmaFactorBS="ttcttcgtgtaatgtgttaaatgtatggaaaaattcttcctg
                     ggtttGTTCTTtccccgctaaaaattGAATATCATCTATCAAAAGcacatcaacattt
                     c"
                     /listShort="S4, S2"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(657)
                     /Source="Nicolas_upshifts"
                     /id="U3"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.992007992007992"
                     /psig="0.992007992007992"
                     /xcortree=1004
                     /SigmaFactorBS="ttcttcgtgtaatgtgttaaatgtatggaaaaattcttcctg
                     ggtttGTTCTTtccccgctaaaaattGAATATCATCTATCAAAAGcacatcaacattt
                     c"
                     /listShort="S4, S2"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(665..670)
                     /Source="Nicolas_upshift_promotors"
                     /id="U3"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.992007992007992"
                     /psig="0.992007992007992"
                     /xcortree=1004
                     /SigmaFactorBS="ttcttcgtgtaatgtgttaaatgtatggaaaaattcttcctg
                     ggtttGTTCTTtccccgctaaaaattGAATATCATCTATCAAAAGcacatcaacattt
                     c"
                     /listShort="S4, S2"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     S_feature       1342..1529
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1751_1938"
                     /HighExp="G150, Heat, G180, G135, Paraq, Oxctl, dia0,
                     LBGstat, S1, Lbexp"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig=1
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S5"
     CDS             1530..2666
                     /gene="dnaN"
                     /locus_tag="BSU_00020"
                     /old_locus_tag="BSU00020"
                     /EC_number="2.7.7.7"
                     /function="16.9: Replicate"
                     /experiment="publication(s) with functional evidences,
                     PMID:2846289, 11395445, 12682299, 20453097, 23228104,
                     28878042"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 2846289, 11395445,
                     12682299, 20453097, 23228104, 28878042; Product type e :
                     enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III (beta subunit)"
                     /protein_id="NP_387883.1"
                     /db_xref="EnsemblGenomes-Gn:BSU00020"
                     /db_xref="EnsemblGenomes-Tr:CAB11778"
                     /db_xref="GOA:P05649"
                     /db_xref="InterPro:IPR001001"
                     /db_xref="InterPro:IPR022634"
                     /db_xref="InterPro:IPR022635"
                     /db_xref="InterPro:IPR022637"
                     /db_xref="PDB:4TR6"
                     /db_xref="SubtiList:BG10066"
                     /db_xref="UniProtKB/Swiss-Prot:P05649"
                     /translation="MKFTIQKDRLVESVQDVLKAVSSRTTIPILTGIKIVASDDGVSF
                     TGSDSDISIESFIPKEEGDKEIVTIEQPGSIVLQARFFSEIVKKLPMATVEIEVQNQY
                     LTIIRSGKAEFNLNGLDADEYPHLPQIEEHHAIQIPTDLLKNLIRQTVFAVSTSETRP
                     ILTGVNWKVEQSELLCTATDSHRLALRKAKLDIPEDRSYNVVIPGKSLTELSKILDDN
                     QELVDIVITETQVLFKAKNVLFFSRLLDGNYPDTTSLIPQDSKTEIIVNTKEFLQAID
                     RASLLAREGRNNVVKLSAKPAESIEISSNSPEIGKVVEAIVADQIEGEELNISFSPKY
                     MLDALKVLEGAEIRVSFTGAMRPFLIRTPNDETIVQLILPVRTY*"
                     /label="dnaN CDS"
     gene            1530..2666
                     /gene="dnaN"
                     /locus_tag="BSU_00020"
                     /old_locus_tag="BSU00020"
                     /label="dnaN gene"
     downshifts      2650
                     /Source="Nicolas_upshifts"
                     /id="D1"
                     /incds=0
                     /nref=29
                     /ntot=161
                     /MaxReadThrough="5.22584"
                     /MaxDrop="4.17087"
                     /score="21.887269"
                     /energy="-14.2"
                     /TU="U1"
                     /idTUdmin="U1"
                     /TUdmin="-572"
                     /isTUend="FALSE"
                     /label="downshifts"
     promotor_-35    2731..2735
                     /Source="Nicolas_upshift_promotors"
                     /id="U4"
                     /multdbtbs="SigA"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.826173826173826"
                     /psig="0.999000999001"
                     /xcortree=2587
                     /SigmaFactorBS="ttctattcggtatctgctccgacaagttttcCCTTTccctaa
                     ttcgttttttTTTAGTACAATTAGATATTAgtgatatttgaaagaggtcgatataatg
                     g"
                     /listShort="yaaA, recF, yaaB, gyrB, S6, gyrA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    2752..2771
                     /Source="Nicolas_upshift_promotors"
                     /id="U4"
                     /multdbtbs="SigA"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.826173826173826"
                     /psig="0.999000999001"
                     /xcortree=2587
                     /SigmaFactorBS="ttctattcggtatctgctccgacaagttttcCCTTTccctaa
                     ttcgttttttTTTAGTACAATTAGATATTAgtgatatttgaaagaggtcgatataatg
                     g"
                     /listShort="yaaA, recF, yaaB, gyrB, S6, gyrA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        2760
                     /Source="Nicolas_upshifts"
                     /id="U4"
                     /multdbtbs="SigA"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.826173826173826"
                     /psig="0.999000999001"
                     /xcortree=2587
                     /SigmaFactorBS="ttctattcggtatctgctccgacaagttttcCCTTTccctaa
                     ttcgttttttTTTAGTACAATTAGATATTAgtgatatttgaaagaggtcgatataatg
                     g"
                     /listShort="yaaA, recF, yaaB, gyrB, S6, gyrA"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             2797..3012
                     /gene="rlbA"
                     /locus_tag="BSU_00030"
                     /old_locus_tag="BSU00030"
                     /function="16.13: Shape"
                     /experiment="publication(s) with functional evidences,
                     PMID:24637032, 24939895"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 24637032, 24939895;
                     Product type f: factor"
                     /codon_start=1
                     /transl_table=11
                     /product="RNA binding protein involved in ribosome
                     maturation"
                     /protein_id="NP_387884.1"
                     /db_xref="EnsemblGenomes-Gn:BSU00030"
                     /db_xref="EnsemblGenomes-Tr:CAB11779"
                     /db_xref="GOA:P05650"
                     /db_xref="InterPro:IPR002942"
                     /db_xref="InterPro:IPR014330"
                     /db_xref="InterPro:IPR036986"
                     /db_xref="SubtiList:BG10067"
                     /db_xref="UniProtKB/Swiss-Prot:P05650"
                     /translation="MANPISIDTEMITLGQFLKLADVIQSGGMAKWFLSEHEVLVNDE
                     PDNRRGRKLYVGDVVEIEGFGSFQVVN*"
                     /label="rlbA CDS"
     gene            2797..3012
                     /gene="rlbA"
                     /locus_tag="BSU_00030"
                     /old_locus_tag="BSU00030"
                     /label="rlbA gene"
     CDS             3028..4140
                     /gene="recF"
                     /locus_tag="BSU_00040"
                     /old_locus_tag="BSU00040"
                     /function="16.6: Maintain"
                     /function="16.9: Replicate"
                     /experiment="publication(s) with functional evidences,
                     PMID:15186413, 16061691, 16385024, 22342069"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 15186413, 16061691,
                     16385024, 22342069; Product type f: factor"
                     /codon_start=1
                     /transl_table=11
                     /product="RecA filament-DNA complex stabilisation, ssDNA
                     and dsDNA binding, ATP binding"
                     /protein_id="NP_387885.1"
                     /db_xref="EnsemblGenomes-Gn:BSU00040"
                     /db_xref="EnsemblGenomes-Tr:CAB11780"
                     /db_xref="GOA:P05651"
                     /db_xref="InterPro:IPR001238"
                     /db_xref="InterPro:IPR003395"
                     /db_xref="InterPro:IPR018078"
                     /db_xref="InterPro:IPR027417"
                     /db_xref="SubtiList:BG10068"
                     /db_xref="UniProtKB/Swiss-Prot:P05651"
                     /translation="MYIQNLELTSYRNYDHAELQFENKVNVIIGENAQGKTNLMEAIY
                     VLSMAKSHRTSNDKELIRWDKDYAKIEGRVMKQNGAIPMQLVISKKGKKGKVNHIEQQ
                     KLSQYVGALNTIMFAPEDLNLVKGSPQVRRRFLDMEIGQVSPVYLHDLSLYQKILSQR
                     NHFLKQLQTRKQTDRTMLDVLTDQLVEVAAKVVVKRLQFTAQLEKWAQPIHAGISRGL
                     EELTLKYHTALDVSDPLDLSKIGDSYQEAFSKLREKEIERGVTLSGPHRDDVLFYVNG
                     RDVQTYGSQGQQRTTALSLKLAEIDLIHEEIGEYPILLLDDVLSELDDYRQSHLLHTI
                     QGRVQTFVTTTSVDGIDHETLRQAGMFRVQNGALVK*"
                     /label="recF CDS"
     gene            3028..4140
                     /gene="recF"
                     /locus_tag="BSU_00040"
                     /old_locus_tag="BSU00040"
                     /label="recF gene"
     misc_feature    3226..3245
                     /Source="Nicolas_upshift_promotors"
                     /id="U5"
                     /multdbtbs="SigA"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.992007992007992"
                     /psig=1
                     /xcortree=2750
                     /SigmaFactorBS="cggacatcaaatgacaaagaacttatacggtgggacaaagac
                     TATGCTAAAATAGAGGGAAGagtgatgaagcaaaacggggcgatcccgatgcagctcg
                     t"
                     /listShort="yaaB, gyrB, S6, gyrA"
                     /GFF_Attribute="listLong"
                     /label="promotor_single_box"
                     /note="Geneious type: promotor_single_box"
     upshifts        3244
                     /Source="Nicolas_upshifts"
                     /id="U5"
                     /multdbtbs="SigA"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.992007992007992"
                     /psig=1
                     /xcortree=2750
                     /SigmaFactorBS="cggacatcaaatgacaaagaacttatacggtgggacaaagac
                     TATGCTAAAATAGAGGGAAGagtgatgaagcaaaacggggcgatcccgatgcagctcg
                     t"
                     /listShort="yaaB, gyrB, S6, gyrA"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             4158..4403
                     /gene="remB"
                     /locus_tag="BSU_00050"
                     /old_locus_tag="BSU00050"
                     /function="16.5: Explore"
                     /experiment="publication(s) with functional evidences,
                     PMID:19363116"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 19363116; Product type r:
                     regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="regulator of extracellular matrix formation"
                     /protein_id="NP_387886.2"
                     /db_xref="EnsemblGenomes-Gn:BSU00050"
                     /db_xref="EnsemblGenomes-Tr:CAB11781"
                     /db_xref="InterPro:IPR007169"
                     /db_xref="SubtiList:BG10069"
                     /db_xref="UniProtKB/Swiss-Prot:P37525"
                     /translation="MYIHLGDDFVVSTRDIVGIFDFKANMSPIVEEFLKKQKHKVVPS
                     VNGTPKSIVVTVQNIYYSPLSSSTLKKRAQFMFEIDS*"
                     /label="remB CDS"
     gene            4158..4403
                     /gene="remB"
                     /locus_tag="BSU_00050"
                     /old_locus_tag="BSU00050"
                     /label="remB gene"
     CDS             4458..6374
                     /gene="gyrB"
                     /locus_tag="BSU_00060"
                     /old_locus_tag="BSU00060"
                     /EC_number="5.99.1.3"
                     /function="16.2: Construct biomass (Anabolism)"
                     /function="16.9: Replicate"
                     /function="16.3: Control"
                     /experiment="publication(s) with functional evidences,
                     PMID:12682299, 12767818, 17320901"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 12682299, 12767818,
                     17320901; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA gyrase (subunit B)"
                     /protein_id="NP_387887.1"
                     /db_xref="EnsemblGenomes-Gn:BSU00060"
                     /db_xref="EnsemblGenomes-Tr:CAB11782"
                     /db_xref="GOA:P05652"
                     /db_xref="InterPro:IPR001241"
                     /db_xref="InterPro:IPR002288"
                     /db_xref="InterPro:IPR003594"
                     /db_xref="InterPro:IPR006171"
                     /db_xref="InterPro:IPR011557"
                     /db_xref="InterPro:IPR013506"
                     /db_xref="InterPro:IPR013759"
                     /db_xref="InterPro:IPR013760"
                     /db_xref="InterPro:IPR014721"
                     /db_xref="InterPro:IPR018522"
                     /db_xref="InterPro:IPR020568"
                     /db_xref="InterPro:IPR034160"
                     /db_xref="InterPro:IPR036890"
                     /db_xref="SubtiList:BG10070"
                     /db_xref="UniProtKB/Swiss-Prot:P05652"
                     /translation="MEQQQNSYDENQIQVLEGLEAVRKRPGMYIGSTNSKGLHHLVWE
                     IVDNSIDEALAGYCTDINIQIEKDNSITVVDNGRGIPVGIHEKMGRPAVEVIMTVLHA
                     GGKFDGSGYKVSGGLHGVGASVVNALSTELDVTVHRDGKIHRQTYKRGVPVTDLEIIG
                     ETDHTGTTTHFVPDPEIFSETTEYDYDLLANRVRELAFLTKGVNITIEDKREGQERKN
                     EYHYEGGIKSYVEYLNRSKEVVHEEPIYIEGEKDGITVEVALQYNDSYTSNIYSFTNN
                     INTYEGGTHEAGFKTGLTRVINDYARKKGLIKENDPNLSGDDVREGLTAIISIKHPDP
                     QFEGQTKTKLGNSEARTITDTLFSTAMETFMLENPDAAKKIVDKGLMAARARMAAKKA
                     RELTRRKSALEISNLPGKLADCSSKDPSISELYIVEGDSAGGSAKQGRDRHFQAILPL
                     RGKILNVEKARLDKILSNNEVRSMITALGTGIGEDFNLEKARYHKVVIMTDADVDGAH
                     IRTLLLTFFYRYMRQIIENGYVYIAQPPLYKVQQGKRVEYAYNDKELEELLKTLPQTP
                     KPGLQRYKGLGEMNATQLWETTMDPSSRTLLQVTLEDAMDADETFEMLMGDKVEPRRN
                     FIEANARYVKNLDI*"
                     /label="gyrB CDS"
     gene            4458..6374
                     /gene="gyrB"
                     /locus_tag="BSU_00060"
                     /old_locus_tag="BSU00060"
                     /label="gyrB gene"
     promotor_-10    complement(6003..6021)
                     /Source="Nicolas_upshift_promotors"
                     /id="U6"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp=1
                     /psig=1
                     /xcortree=1200
                     /SigmaFactorBS="cggcggctgcgcaatgtacacgtAGCCATtttcgataatttg
                     gcGCATATATCTGTAAAAGAAcgttaacagcagtgttctgatgtgcgcgccgtcaaca
                     t"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(6005)
                     /Source="Nicolas_upshifts"
                     /id="U6"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp=1
                     /psig=1
                     /xcortree=1200
                     /SigmaFactorBS="cggcggctgcgcaatgtacacgtAGCCATtttcgataatttg
                     gcGCATATATCTGTAAAAGAAcgttaacagcagtgttctgatgtgcgcgccgtcaaca
                     t"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(6037..6042)
                     /Source="Nicolas_upshift_promotors"
                     /id="U6"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp=1
                     /psig=1
                     /xcortree=1200
                     /SigmaFactorBS="cggcggctgcgcaatgtacacgtAGCCATtttcgataatttg
                     gcGCATATATCTGTAAAAGAAcgttaacagcagtgttctgatgtgcgcgccgtcaaca
                     t"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     S_feature       6375..6584
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_6784_6993"
                     /HighExp="Cold, H2O2, G180, Oxctl, G135, G150, Sw, dia15,
                     LBGexp, Paraq"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA, SigA"
                     /TUshortPSig="1, 0.999"
                     /TUlongSig="SigA"
                     /TUlongPSig=1
                     /label="S6"
     CDS             6585..9050
                     /gene="gyrA"
                     /locus_tag="BSU_00070"
                     /old_locus_tag="BSU00070"
                     /EC_number="5.99.1.3"
                     /function="16.3: Control"
                     /function="16.2: Construct biomass (Anabolism)"
                     /function="16.9: Replicate"
                     /experiment="publication(s) with functional evidences,
                     PMID:12682299, 12767818, 17320901, 27557712"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 12682299, 12767818,
                     17320901, 27557712; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA gyrase (subunit A)"
                     /protein_id="NP_387888.1"
                     /db_xref="EnsemblGenomes-Gn:BSU00070"
                     /db_xref="EnsemblGenomes-Tr:CAB11783"
                     /db_xref="GOA:P05653"
                     /db_xref="InterPro:IPR002205"
                     /db_xref="InterPro:IPR005743"
                     /db_xref="InterPro:IPR006691"
                     /db_xref="InterPro:IPR013757"
                     /db_xref="InterPro:IPR013758"
                     /db_xref="InterPro:IPR013760"
                     /db_xref="InterPro:IPR024946"
                     /db_xref="InterPro:IPR035516"
                     /db_xref="PDB:4DDQ"
                     /db_xref="SubtiList:BG10071"
                     /db_xref="UniProtKB/Swiss-Prot:P05653"
                     /translation="MSEQNTPQVREINISQEMRTSFLDYAMSVIVSRALPDVRDGLKP
                     VHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFNYRYM
                     LVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKDTIDYQDNYDGSEREPVVM
                     PSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENPDITIPELMEVIPGPDF
                     PTAGQILGRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAKLIEK
                     IADLVRDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTALQTSFGINL
                     LALVDGQPKVLTLKQCLEHYLDHQKVVIRRRTAYELRKAEARAHILEGLRVALDHLDA
                     VISLIRNSQTAEIARTGLIEQFSLTEKQAQAILDMRLQRLTGLEREKIEEEYQSLVKL
                     IAELKDILANEYKVLEIIREELTEIKERFNDERRTEIVTSGLETIEDEDLIERENIVV
                     TLTHNGYVKRLPASTYRSQKRGGKGVQGMGTNEDDFVEHLISTSTHDTILFFSNKGKV
                     YRAKGYEIPEYGRTAKGIPIINLLEVEKGEWINAIIPVTEFNAELYLFFTTKHGVSKR
                     TSLSQFANIRNNGLIALSLREDDELMGVRLTDGTKQIIIGTKNGLLIRFPETDVREMG
                     RTAAGVKGITLTDDDVVVGMEILEEESHVLIVTEKGYGKRTPAEEYRTQSRGGKGLKT
                     AKITENNGQLVAVKATKGEEDLMIITASGVLIRMDINDISITGRVTQGVRLIRMAEEE
                     HVATVALVEKNEEDENEEEQEEV*"
                     /label="gyrA CDS"
     gene            6585..9050
                     /gene="gyrA"
                     /locus_tag="BSU_00070"
                     /old_locus_tag="BSU00070"
                     /label="gyrA gene"
     promotor_-35    8964..8967
                     /Source="Nicolas_upshift_promotors"
                     /id="U7"
                     /multdbtbs="-"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp="0.418581418581419"
                     /psig="0.9000999000999"
                     /xcortree=2642
                     /SigmaFactorBS="tggacatcaatgatatctccatcaccggacgtgtcactcaag
                     gtgtgcgtctcatcagaATGGcagaagaagagcatgtTGCTACAGTAGCTTTAGTtga
                     g"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     upshifts        8965
                     /Source="Nicolas_upshifts"
                     /id="U7"
                     /multdbtbs="-"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp="0.418581418581419"
                     /psig="0.9000999000999"
                     /xcortree=2642
                     /SigmaFactorBS="tggacatcaatgatatctccatcaccggacgtgtcactcaag
                     gtgtgcgtctcatcagaATGGcagaagaagagcatgtTGCTACAGTAGCTTTAGTtga
                     g"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-10    8984..9001
                     /Source="Nicolas_upshift_promotors"
                     /id="U7"
                     /multdbtbs="-"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp="0.418581418581419"
                     /psig="0.9000999000999"
                     /xcortree=2642
                     /SigmaFactorBS="tggacatcaatgatatctccatcaccggacgtgtcactcaag
                     gtgtgcgtctcatcagaATGGcagaagaagagcatgtTGCTACAGTAGCTTTAGTtga
                     g"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     downshifts      9031
                     /Source="Nicolas_upshifts"
                     /id="D2"
                     /incds=0
                     /nref=251
                     /ntot=261
                     /MaxReadThrough="3.73971"
                     /MaxDrop="8.1288"
                     /score="33.5021066"
                     /energy="-14.1"
                     /TU="NA"
                     /idTUdmin="U4"
                     /TUdmin=0
                     /isTUend="TRUE"
                     /label="downshifts"
     promotor_-35    9095..9101
                     /Source="Nicolas_upshift_promotors"
                     /id="U8"
                     /multdbtbs="SigA"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp="0.798201798201798"
                     /psig=1
                     /xcortree=2622
                     /SigmaFactorBS="cagctgaaatagctgcgcttttttgtgtcataaccCTTTACA
                     gtcataaaaattaTGGTATAATCATTTCTGTTGtctttttaaagacacaagcatgacc
                     a"
                     /listShort="S7, rrnO-16S"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    9115..9134
                     /Source="Nicolas_upshift_promotors"
                     /id="U8"
                     /multdbtbs="SigA"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp="0.798201798201798"
                     /psig=1
                     /xcortree=2622
                     /SigmaFactorBS="cagctgaaatagctgcgcttttttgtgtcataaccCTTTACA
                     gtcataaaaattaTGGTATAATCATTTCTGTTGtctttttaaagacacaagcatgacc
                     a"
                     /listShort="S7, rrnO-16S"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     S_feature       9120..9205
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_9529_9614"
                     /HighExp="LBGstat, H2O2, Paraq, Oxctl, UNK1, LBGexp, LPhT,
                     MG-0.2, MG 25, G180"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig=1
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S7"
     upshifts        9120
                     /Source="Nicolas_upshifts"
                     /id="U8"
                     /multdbtbs="SigA"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp="0.798201798201798"
                     /psig=1
                     /xcortree=2622
                     /SigmaFactorBS="cagctgaaatagctgcgcttttttgtgtcataaccCTTTACA
                     gtcataaaaattaTGGTATAATCATTTCTGTTGtctttttaaagacacaagcatgacc
                     a"
                     /listShort="S7, rrnO-16S"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    9191..9198
                     /Source="Nicolas_upshift_promotors"
                     /id="U9"
                     /multdbtbs="SigA"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.889110889110889"
                     /psig=1
                     /xcortree=2634
                     /SigmaFactorBS="cacaagcatgaccattatgactagtaaaaactttttcaaaaa
                     agTATTGACCtagttaactaaaaaTGTTACTATTAAGTAGTCGCtttgagagaagcac
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     upshifts        9207
                     /Source="Nicolas_upshifts"
                     /id="U9"
                     /multdbtbs="SigA"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.889110889110889"
                     /psig=1
                     /xcortree=2634
                     /SigmaFactorBS="cacaagcatgaccattatgactagtaaaaactttttcaaaaa
                     agTATTGACCtagttaactaaaaaTGTTACTATTAAGTAGTCGCtttgagagaagcac
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-10    9213..9232
                     /Source="Nicolas_upshift_promotors"
                     /id="U9"
                     /multdbtbs="SigA"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.889110889110889"
                     /psig=1
                     /xcortree=2634
                     /SigmaFactorBS="cacaagcatgaccattatgactagtaaaaactttttcaaaaa
                     agTATTGACCtagttaactaaaaaTGTTACTATTAAGTAGTCGCtttgagagaagcac
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     rRNA            9401..10955
                     /gene="rrnO-16S"
                     /locus_tag="BSU_rRNA_1"
                     /product="ribosomal RNA-16S"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; Product type n: RNA"
                     /function="16.2: Construct biomass (Anabolism)"
                     /label="rrnO-16S rRNA"
     gene            9401..10955
                     /gene="rrnO-16S"
                     /locus_tag="BSU_rRNA_1"
                     /label="rrnO-16S gene"
     tRNA            11055..11131
                     /gene="trnO-Ile"
                     /locus_tag="BSU_tRNA_5"
                     /product="tRNA-Ile"
                     /inference="profile:tRNAscan:1.23"
                     /note="Evidence 2a: Function from experimental evidences
                     in other organisms; Product type n: RNA"
                     /function="16.2: Construct biomass (Anabolism)"
                     /label="trnO-Ile tRNA"
     gene            11055..11131
                     /gene="trnO-Ile"
                     /locus_tag="BSU_tRNA_5"
                     /label="trnO-Ile gene"
     tRNA            11143..11218
                     /gene="trnO-Ala"
                     /locus_tag="BSU_tRNA_6"
                     /product="tRNA-Ala"
                     /inference="profile:tRNAscan:1.23"
                     /note="transfer RNA-Ala(UGC); Evidence 2a: Function from
                     experimental evidences in other organisms; Product type n:
                     RNA"
                     /function="16.2: Construct biomass (Anabolism)"
                     /label="trnO-Ala tRNA"
     gene            11143..11218
                     /gene="trnO-Ala"
                     /locus_tag="BSU_tRNA_6"
                     /label="trnO-Ala gene"
     rRNA            11300..14227
                     /gene="rrnO-23S"
                     /locus_tag="BSU_rRNA_2"
                     /product="ribosomal RNA-23S"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; Product type n: RNA"
                     /function="16.2: Construct biomass (Anabolism)"
                     /label="rrnO-23S rRNA"
     gene            11300..14227
                     /gene="rrnO-23S"
                     /locus_tag="BSU_rRNA_2"
                     /label="rrnO-23S gene"
     rRNA            14283..14401
                     /gene="rrnO-5S"
                     /locus_tag="BSU_rRNA_3"
                     /product="ribosomal RNA-5S"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; Product type n: RNA"
                     /function="16.2: Construct biomass (Anabolism)"
                     /label="rrnO-5S rRNA"
     gene            14283..14401
                     /gene="rrnO-5S"
                     /locus_tag="BSU_rRNA_3"
                     /label="rrnO-5S gene"
     S_feature       14402..15459
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_14811_15868"
                     /HighExp="G180, T0.0H, T0.30H, G135, T-0.40H, LBGstat,
                     Cold, Paraq, C30, Oxctl"
                     /AntisenseName="yaaC"
                     /AntisenseCor="-4.5985764709218099E-2"
                     /AntisenseRegPval="-0.3"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="NA"
                     /TUshortPSig="NA"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S8"
     CDS             complement(14438..15385)
                     /gene="yaaC"
                     /locus_tag="BSU_00080"
                     /old_locus_tag="BSU00080"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms; PubMedId: 22333191"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved protein of unknown function"
                     /protein_id="NP_387889.1"
                     /db_xref="EnsemblGenomes-Gn:BSU00080"
                     /db_xref="EnsemblGenomes-Tr:CAB11784"
                     /db_xref="InterPro:IPR026988"
                     /db_xref="SubtiList:BG10072"
                     /db_xref="UniProtKB/Swiss-Prot:P37526"
                     /translation="MTYHEWKDLALFYSVESTQKFLEKVYILNGINDAKKNSFKNSER
                     FIYFLKHAESFYKQAAYSPLEIKPILLFYGMAQLIKACLITRDPHYPSHTSVLAHGVT
                     TRKRKKQNYCFSDDEVKIQRNGLCVHFMKHLFGQSDIVDERYTMKKLLMAIPELSDIF
                     YFQQKERFMTKVEKDKNEIFVPEEVVINYKMSDSRFAEYMSHHYQWSFTKKNEHGLLF
                     EISPQDKEPWTSTSLLFDMEKNQYYIPSQREQFLRLPEMTIHYLILYNVGMIARYETE
                     WWYELLTQHISDDYVLIQQFLLVSEKKFPKYASQFLLHF*"
                     /label="yaaC CDS"
     gene            complement(14438..15385)
                     /gene="yaaC"
                     /locus_tag="BSU_00080"
                     /old_locus_tag="BSU00080"
                     /label="yaaC gene"
     promotor_-35    15438..15445
                     /Source="Nicolas_upshift_promotors"
                     /id="U10"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.721278721278721"
                     /psig=1
                     /xcortree=2668
                     /SigmaFactorBS="ctttccgttatctaaatatttcaactctttcccgcttCCTTG
                     ACAtgctcttggctagtTGATAATCTACATATAATATtttgccgaaaagagggggatt
                     t"
                     /listShort="guaB"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    15460..15479
                     /Source="Nicolas_upshift_promotors"
                     /id="U10"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.721278721278721"
                     /psig=1
                     /xcortree=2668
                     /SigmaFactorBS="ctttccgttatctaaatatttcaactctttcccgcttCCTTG
                     ACAtgctcttggctagtTGATAATCTACATATAATATtttgccgaaaagagggggatt
                     t"
                     /listShort="guaB"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        15461
                     /Source="Nicolas_upshifts"
                     /id="U10"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.721278721278721"
                     /psig=1
                     /xcortree=2668
                     /SigmaFactorBS="ctttccgttatctaaatatttcaactctttcccgcttCCTTG
                     ACAtgctcttggctagtTGATAATCTACATATAATATtttgccgaaaagagggggatt
                     t"
                     /listShort="guaB"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     upshifts        complement(15466)
                     /Source="Nicolas_upshifts"
                     /id="U11"
                     /multdbtbs="-"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp="0.89010989010989"
                     /psig="0.89010989010989"
                     /xcortree=947
                     /SigmaFactorBS="tgaaaatttactttcccacaTTAGTAAatccccctcttttCG
                     GCAAAATATTatatgtagattatcaactagccaagagcatgtcaaggaagcgggaaag
                     a"
                     /listShort="yaaC"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-10    complement(15475..15486)
                     /Source="Nicolas_upshift_promotors"
                     /id="U11"
                     /multdbtbs="-"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp="0.89010989010989"
                     /psig="0.89010989010989"
                     /xcortree=947
                     /SigmaFactorBS="tgaaaatttactttcccacaTTAGTAAatccccctcttttCG
                     GCAAAATATTatatgtagattatcaactagccaagagcatgtcaaggaagcgggaaag
                     a"
                     /listShort="yaaC"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     promotor_-35    complement(15500..15506)
                     /Source="Nicolas_upshift_promotors"
                     /id="U11"
                     /multdbtbs="-"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp="0.89010989010989"
                     /psig="0.89010989010989"
                     /xcortree=947
                     /SigmaFactorBS="tgaaaatttactttcccacaTTAGTAAatccccctcttttCG
                     GCAAAATATTatatgtagattatcaactagccaagagcatgtcaaggaagcgggaaag
                     a"
                     /listShort="yaaC"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             15506..16972
                     /gene="guaB"
                     /locus_tag="BSU_00090"
                     /old_locus_tag="BSU00090"
                     /EC_number="1.1.1.205"
                     /function="16.2: Construct biomass (Anabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:12682299, 1722815, 17611193, 1979163, 3125411,
                     8917437"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 12682299, 1722815,
                     17611193, 1979163, 3125411, 8917437; Product type e :
                     enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="inosine-monophosphate dehydrogenase"
                     /protein_id="NP_387890.1"
                     /db_xref="EnsemblGenomes-Gn:BSU00090"
                     /db_xref="EnsemblGenomes-Tr:CAB11785"
                     /db_xref="GOA:P21879"
                     /db_xref="InterPro:IPR000644"
                     /db_xref="InterPro:IPR001093"
                     /db_xref="InterPro:IPR005990"
                     /db_xref="InterPro:IPR013785"
                     /db_xref="InterPro:IPR015875"
                     /db_xref="SubtiList:BG10073"
                     /db_xref="UniProtKB/Swiss-Prot:P21879"
                     /translation="MWESKFSKEGLTFDDVLLVPAKSEVLPRDVDLSVELTKTLKLNI
                     PVISAGMDTVTESAMAIAMARQGGLGIIHKNMSIEQQAEQVDKVKRSERGVITNPFFL
                     TPDHQVFDAEHLMGKYRISGVPIVNNEEDQKLVGIITNRDLRFISDYSMKISDVMTKE
                     ELVTASVGTTLDEAEKILQKHKIEKLPLVDDQNKLKGLITIKDIEKVIEFPNSSKDIH
                     GRLIVGAAVGVTGDTMTRVKKLVEANVDVIVIDTAHGHSQGVLNTVTKIRETYPELNI
                     IAGNVATAEATRALIEAGADVVKVGIGPGSICTTRVVAGVGVPQITAIYDCATEARKH
                     GKTIIADGGIKFSGDITKALAAGGHAVMLGSLLAGTSESPGETEIYQGRRFKVYRGMG
                     SVAAMEKGSKDRYFQEENKKFVPEGIEGRTPYKGPVEETVYQLVGGLRSGMGYCGSKD
                     LRALREEAQFIRMTGAGLRESHPHDVQITKESPNYTIS*"
                     /label="guaB CDS"
     gene            15506..16972
                     /gene="guaB"
                     /locus_tag="BSU_00090"
                     /old_locus_tag="BSU00090"
                     /label="guaB gene"
     downshifts      complement(15510)
                     /Source="Nicolas_upshifts"
                     /id="D3"
                     /incds=0
                     /nref=33
                     /ntot=102
                     /MaxReadThrough="1.81989"
                     /MaxDrop="4.44626"
                     /score="-6.76739893"
                     /energy="-12.2"
                     /TU="NA"
                     /idTUdmin="U12"
                     /TUdmin=0
                     /isTUend="TRUE"
                     /label="downshifts"
     promotor_no_box complement(15536..15636)
                     /Source="Nicolas_upshift_promotors"
                     /id="U12"
                     /multdbtbs="-"
                     /comp="M13"
                     /sig="Sig-"
                     /pcomp="0.922077922077922"
                     /psig="0.016983016983017"
                     /xcortree=82
                     /SigmaFactorBS="atatttagctttaacgtttttgtaagttctacagataaatcc
                     acatcacgcggaagtacctcagactttgctggtacaagcagcacatcgtcgaacgtta
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_no_box"
     upshifts        complement(15576)
                     /Source="Nicolas_upshifts"
                     /id="U12"
                     /multdbtbs="-"
                     /comp="M13"
                     /sig="Sig-"
                     /pcomp="0.922077922077922"
                     /psig="0.016983016983017"
                     /xcortree=82
                     /SigmaFactorBS="atatttagctttaacgtttttgtaagttctacagataaatcc
                     acatcacgcggaagtacctcagactttgctggtacaagcagcacatcgtcgaacgtta
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     S_feature       complement(16829..17424)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_17238_17833_c"
                     /HighExp="Etha, Gly, C30, Salt, S8, S6, HiTm, S7, Sw, C90"
                     /AntisenseName="dacA"
                     /AntisenseCor="-0.39306815699287101"
                     /AntisenseRegPval="-10.6"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigB"
                     /TUshortPSig=1
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S9"
     downshifts      16960
                     /Source="Nicolas_upshifts"
                     /id="D4"
                     /incds=0
                     /nref=243
                     /ntot=277
                     /MaxReadThrough="3.34899"
                     /MaxDrop="7.78161"
                     /score="26.7620012"
                     /energy="-10.6"
                     /TU="NA"
                     /idTUdmin="U10"
                     /TUdmin="-14"
                     /isTUend="TRUE"
                     /label="downshifts"
     promotor_-35    17018..17022
                     /Source="Nicolas_upshift_promotors"
                     /id="U13"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.948051948051948"
                     /psig=1
                     /xcortree=2602
                     /SigmaFactorBS="aaattaaaaacatttgacagggtctctgactctgTCTATttt
                     ttttatactgatTATGATAAAATTTATACTGTtgtgcattgaaaatgtccttaacggc
                     t"
                     /listShort="S10, dacA, S11, S12, pdxS, pdxT, NA, serS"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    17038..17057
                     /Source="Nicolas_upshift_promotors"
                     /id="U13"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.948051948051948"
                     /psig=1
                     /xcortree=2602
                     /SigmaFactorBS="aaattaaaaacatttgacagggtctctgactctgTCTATttt
                     ttttatactgatTATGATAAAATTTATACTGTtgtgcattgaaaatgtccttaacggc
                     t"
                     /listShort="S10, dacA, S11, S12, pdxS, pdxT, NA, serS"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     S_feature       17044..17124
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_17453_17533"
                     /HighExp="C30, LBGstat, G180, G150, LBGexp, G135, Lbexp,
                     Oxctl, dia0, MG 25"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig=1
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S10"
     upshifts        17044
                     /Source="Nicolas_upshifts"
                     /id="U13"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.948051948051948"
                     /psig=1
                     /xcortree=2602
                     /SigmaFactorBS="aaattaaaaacatttgacagggtctctgactctgTCTATttt
                     ttttatactgatTATGATAAAATTTATACTGTtgtgcattgaaaatgtccttaacggc
                     t"
                     /listShort="S10, dacA, S11, S12, pdxS, pdxT, NA, serS"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             17125..18456
                     /gene="dacA"
                     /locus_tag="BSU_00100"
                     /old_locus_tag="BSU00100"
                     /EC_number="3.4.16.4"
                     /experiment="publication(s) with functional evidences,
                     PMID:8370539, 9864321, 10383963, 21378199"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 8370539, 9864321,
                     10383963, 21378199; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="D-alanyl-D-alanine carboxypeptidase
                     (penicillin-binding protein 5)"
                     /protein_id="NP_387891.1"
                     /db_xref="EnsemblGenomes-Gn:BSU00100"
                     /db_xref="EnsemblGenomes-Tr:CAB11786"
                     /db_xref="GOA:P08750"
                     /db_xref="InterPro:IPR001967"
                     /db_xref="InterPro:IPR012338"
                     /db_xref="InterPro:IPR012907"
                     /db_xref="InterPro:IPR015956"
                     /db_xref="InterPro:IPR018044"
                     /db_xref="InterPro:IPR037167"
                     /db_xref="SubtiList:BG10074"
                     /db_xref="UniProtKB/Swiss-Prot:P08750"
                     /translation="MNIKKCKQLLMSLVVLTLAVTCLAPMSKAKAASDPIDINASAAI
                     MIEASSGKILYSKNADKRLPIASMTKMMTEYLLLEAIDQGKVKWDQTYTPDDYVYEIS
                     QDNSLSNVPLRKDGKYTVKELYQATAIYSANAAAIAIAEIVAGSETKFVEKMNAKAKE
                     LGLTDYKFVNATGLENKDLHGHQPEGTSVNEESEVSAKDMAVLADHLITDYPEILETS
                     SIAKTKFREGTDDEMDMPNWNFMLKGLVSEYKKATVDGLKTGSTDSAGSCFTGTAERN
                     GMRVITVVLNAKGNLHTGRFDETKKMFDYAFDNFSMKEIYAEGDQVKGHKTISVDKGK
                     EKEVGIVTNKAFSLPVKNGEEKNYKAKVTLNKDNLTAPVKKGTKVGKLTAEYTGDEKD
                     YGFLNSDLAGVDLVTKENVEKANWFVLTMRSIGGFFAGIWGSIVDTVTGWF*"
                     /label="dacA CDS"
     gene            17125..18456
                     /gene="dacA"
                     /locus_tag="BSU_00100"
                     /old_locus_tag="BSU00100"
                     /label="dacA gene"
     promotor_-10    complement(17413..17431)
                     /Source="Nicolas_upshift_promotors"
                     /id="U14"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp=1
                     /psig=1
                     /xcortree=212
                     /SigmaFactorBS="tactgtgtatttcccgtctttccgaagaggaaCGTTTGAtaa
                     gctgttatcttGGGAAATTTCATACACATAgtcatcaggcgtataggtttggtcccat
                     t"
                     /listShort="S9"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(17424)
                     /Source="Nicolas_upshifts"
                     /id="U14"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp=1
                     /psig=1
                     /xcortree=212
                     /SigmaFactorBS="tactgtgtatttcccgtctttccgaagaggaaCGTTTGAtaa
                     gctgttatcttGGGAAATTTCATACACATAgtcatcaggcgtataggtttggtcccat
                     t"
                     /listShort="S9"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(17446..17452)
                     /Source="Nicolas_upshift_promotors"
                     /id="U14"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp=1
                     /psig=1
                     /xcortree=212
                     /SigmaFactorBS="tactgtgtatttcccgtctttccgaagaggaaCGTTTGAtaa
                     gctgttatcttGGGAAATTTCATACACATAgtcatcaggcgtataggtttggtcccat
                     t"
                     /listShort="S9"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     downshifts      18338
                     /Source="Nicolas_upshifts"
                     /id="D5"
                     /incds=1
                     /nref=1
                     /ntot=20
                     /MaxReadThrough="6.76335"
                     /MaxDrop="2.1925"
                     /score="26.7620012"
                     /energy="-10.6"
                     /TU="U13"
                     /idTUdmin="U10"
                     /TUdmin=1364
                     /isTUend="FALSE"
                     /label="downshifts"
     S_feature       18457..18565
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_18866_18974"
                     /HighExp="C30, MG 15, MG 10, MG-0.1, MG 25, BMM, ferm,
                     Cold, MG 60, MG-0.2"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig=1
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S11"
     promotor_-35    18535..18538
                     /Source="Nicolas_upshift_promotors"
                     /id="U15"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.61038961038961"
                     /psig="0.998001998001998"
                     /xcortree=2311
                     /SigmaFactorBS="gaaaaaacccaatttttaataaaaaatgATTTtcaaagcgct
                     aaaaACCGAATAAAATAGTATATAtgcatatgaattattggatttctaggatacaata
                     a"
                     /listShort="S12, pdxS, pdxT, NA, serS"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    18553..18572
                     /Source="Nicolas_upshift_promotors"
                     /id="U15"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.61038961038961"
                     /psig="0.998001998001998"
                     /xcortree=2311
                     /SigmaFactorBS="gaaaaaacccaatttttaataaaaaatgATTTtcaaagcgct
                     aaaaACCGAATAAAATAGTATATAtgcatatgaattattggatttctaggatacaata
                     a"
                     /listShort="S12, pdxS, pdxT, NA, serS"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     S_feature       18567..18652
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_18976_19061"
                     /HighExp="BMM, MG 25, SMM, MG 15, UNK1, MG 10, GM 150,
                     MG-0.1, MG 150, MG 90"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA, SigA"
                     /TUshortPSig="0.998, 1"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S12"
     upshifts        18567
                     /Source="Nicolas_upshifts"
                     /id="U15"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.61038961038961"
                     /psig="0.998001998001998"
                     /xcortree=2311
                     /SigmaFactorBS="gaaaaaacccaatttttaataaaaaatgATTTtcaaagcgct
                     aaaaACCGAATAAAATAGTATATAtgcatatgaattattggatttctaggatacaata
                     a"
                     /listShort="S12, pdxS, pdxT, NA, serS"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             18653..19537
                     /gene="pdxS"
                     /locus_tag="BSU_00110"
                     /old_locus_tag="BSU00110"
                     /EC_number="4.3.3.6"
                     /EC_number="4.-.-.-"
                     /function="16.2: Construct biomass (Anabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:14762015, 15771487, 15911615, 16157873, 17144654"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 14762015, 15771487,
                     15911615, 16157873, 17144654; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine amidotransferase for pyridoxal
                     phosphate synthesis; pyridoxal 5'-phosphate synthase
                     complex, synthase subunit"
                     /protein_id="NP_387892.1"
                     /db_xref="EnsemblGenomes-Gn:BSU00110"
                     /db_xref="EnsemblGenomes-Tr:CAB11787"
                     /db_xref="GOA:P37527"
                     /db_xref="InterPro:IPR001852"
                     /db_xref="InterPro:IPR011060"
                     /db_xref="InterPro:IPR013785"
                     /db_xref="InterPro:IPR033755"
                     /db_xref="PDB:2NV1"
                     /db_xref="PDB:2NV2"
                     /db_xref="SubtiList:BG10075"
                     /db_xref="UniProtKB/Swiss-Prot:P37527"
                     /translation="MAQTGTERVKRGMAEMQKGGVIMDVINAEQAKIAEEAGAVAVMA
                     LERVPADIRAAGGVARMADPTIVEEVMNAVSIPVMAKARIGHIVEARVLEAMGVDYID
                     ESEVLTPADEEFHLNKNEYTVPFVCGCRDLGEATRRIAEGASMLRTKGEPGTGNIVEA
                     VRHMRKVNAQVRKVVAMSEDELMTEAKNLGAPYELLLQIKKDGKLPVVNFAAGGVATP
                     ADAALMMQLGADGVFVGSGIFKSDNPAKFAKAIVEATTHFTDYKLIAELSKELGTAMK
                     GIEISNLLPEQRMQERGW*"
                     /label="pdxS CDS"
     gene            18653..19537
                     /gene="pdxS"
                     /locus_tag="BSU_00110"
                     /old_locus_tag="BSU00110"
                     /label="pdxS gene"
     S_feature       complement(18785..19514)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_19194_19923_c"
                     /HighExp="S6, S8, S7, S5, S4, C30, S3, BT, C90, Gly"
                     /AntisenseName="pdxS"
                     /AntisenseCor="-0.65390240445415004"
                     /AntisenseRegPval="-33.5"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigEF"
                     /TUshortPSig="0.996"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S13"
     promotor_-10    complement(19502..19520)
                     /Source="Nicolas_upshift_promotors"
                     /id="U16"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.996003996003996"
                     /psig="0.996003996003996"
                     /xcortree=1195
                     /SigmaFactorBS="cacctattgttaacatgtcagcagcgctcctatGTTCTTacc
                     agccgcgttcttGCATACGCTGTTCTGGAAGtaagtttgagatttcaatccctttcat
                     t"
                     /listShort="S13"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(19514)
                     /Source="Nicolas_upshifts"
                     /id="U16"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.996003996003996"
                     /psig="0.996003996003996"
                     /xcortree=1195
                     /SigmaFactorBS="cacctattgttaacatgtcagcagcgctcctatGTTCTTacc
                     agccgcgttcttGCATACGCTGTTCTGGAAGtaagtttgagatttcaatccctttcat
                     t"
                     /listShort="S13"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(19536..19541)
                     /Source="Nicolas_upshift_promotors"
                     /id="U16"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.996003996003996"
                     /psig="0.996003996003996"
                     /xcortree=1195
                     /SigmaFactorBS="cacctattgttaacatgtcagcagcgctcctatGTTCTTacc
                     agccgcgttcttGCATACGCTGTTCTGGAAGtaagtttgagatttcaatccctttcat
                     t"
                     /listShort="S13"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             19559..20149
                     /gene="pdxT"
                     /locus_tag="BSU_00120"
                     /old_locus_tag="BSU00120"
                     /EC_number="3.5.1.2"
                     /EC_number="4.3.3.6"
                     /function="16.2: Construct biomass (Anabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:14585832, 14762015, 15771487, 17144654, 18271580,
                     26735940"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 14585832, 14762015,
                     15771487, 17144654, 18271580, 26735940; Product type e :
                     enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine amidotransferase for pyridoxal
                     phosphate synthesis; pyridoxal 5'-phosphate synthase
                     complex, glutamine amidotransferase subunit PdxT"
                     /protein_id="NP_387893.1"
                     /db_xref="EnsemblGenomes-Gn:BSU00120"
                     /db_xref="EnsemblGenomes-Tr:CAB11788"
                     /db_xref="GOA:P37528"
                     /db_xref="InterPro:IPR002161"
                     /db_xref="InterPro:IPR021196"
                     /db_xref="InterPro:IPR029062"
                     /db_xref="PDB:1R9G"
                     /db_xref="PDB:2NV0"
                     /db_xref="PDB:2NV2"
                     /db_xref="SubtiList:BG10076"
                     /db_xref="UniProtKB/Swiss-Prot:P37528"
                     /translation="MLTIGVLGLQGAVREHIHAIEACGAAGLVVKRPEQLNEVDGLIL
                     PGGESTTMRRLIDTYQFMEPLREFAAQGKPMFGTCAGLIILAKEIAGSDNPHLGLLNV
                     VVERNSFGRQVDSFEADLTIKGLDEPFTGVFIRAPHILEAGENVEVLSEHNGRIVAAK
                     QGQFLGCSFHPELTEDHRVTQLFVEMVEEYKQKALV*"
                     /label="pdxT CDS"
     gene            19559..20149
                     /gene="pdxT"
                     /locus_tag="BSU_00120"
                     /old_locus_tag="BSU00120"
                     /label="pdxT gene"
     misc_RNA        20202..20414
                     /gene="tboS"
                     /locus_tag="BSU_misc_RNA_1"
                     /product="T-box riboswitch specific of serine tRNA ligase"
                     /experiment="publication(s) with functional evidences,
                     PMID:1317842, 9098041, 12165569, 12547201"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 1317842, 9098041,
                     12165569, 12547201; Product type n: RNA"
                     /function="16.3: Control"
                     /label="tboS RNA"
     gene            20202..20414
                     /gene="tboS"
                     /locus_tag="BSU_misc_RNA_1"
                     /label="tboS gene"
     downshifts      20379
                     /Source="Nicolas_upshifts"
                     /id="D6"
                     /incds=0
                     /nref=9
                     /ntot=80
                     /MaxReadThrough="7.14793"
                     /MaxDrop="4.37654"
                     /score="41.1243331"
                     /energy="-23.3"
                     /TU="U13,U15"
                     /idTUdmin="U13"
                     /TUdmin="-1347"
                     /isTUend="FALSE"
                     /label="downshifts"
     CDS             20471..21748
                     /gene="serS"
                     /locus_tag="BSU_00130"
                     /old_locus_tag="BSU00130"
                     /EC_number="6.1.1.11"
                     /function="16.2: Construct biomass (Anabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:10546897, 12682299, 14732487"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 10546897, 12682299,
                     14732487; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="seryl-tRNA synthetase"
                     /protein_id="NP_387894.1"
                     /db_xref="EnsemblGenomes-Gn:BSU00130"
                     /db_xref="EnsemblGenomes-Tr:CAB11789"
                     /db_xref="GOA:P37464"
                     /db_xref="InterPro:IPR002314"
                     /db_xref="InterPro:IPR002317"
                     /db_xref="InterPro:IPR006195"
                     /db_xref="InterPro:IPR010978"
                     /db_xref="InterPro:IPR015866"
                     /db_xref="InterPro:IPR033729"
                     /db_xref="SubtiList:BG10077"
                     /db_xref="UniProtKB/Swiss-Prot:P37464"
                     /translation="MLDTKMLRANFQEIKAKLVHKGEDLTDFDKFEALDDRRRELIGK
                     VEELKGKRNEVSQQVAVLKREKKDADHIIKEMREVGEEIKKLDEELRTVEAELDTILL
                     SIPNIPHESVPVGETEDDNVEVRKWGEKPSFAYEPKPHWDIADELGILDFERAAKVTG
                     SRFVFYKGLGARLERALYNFMLDLHVDEYNYTEVIPPYMVNRASMTGTGQLPKFEEDA
                     FKIREEDYFLIPTAEVPITNMHRDEILSGDSLPINYAAFSACFRSEAGSAGRDTRGLI
                     RQHQFNKVELVKFVKPEDSYEELEKLTNQAERVLQLLELPYRVMSMCTGDLGFTAAKK
                     YDIEVWIPSQDTYREISSCSNFEAFQARRANIRFRREAKGKPEHVHTLNGSGLAVGRT
                     VAAILENYQQEDGSVVIPKVLRPYMGNREVMKP*"
                     /label="serS CDS"
     gene            20471..21748
                     /gene="serS"
                     /locus_tag="BSU_00130"
                     /old_locus_tag="BSU00130"
                     /label="serS gene"
     downshifts      21726
                     /Source="Nicolas_upshifts"
                     /id="D7"
                     /incds=0
                     /nref=234
                     /ntot=255
                     /MaxReadThrough="0.83411"
                     /MaxDrop="7.38039"
                     /score="17.6549558"
                     /energy="-13.3"
                     /TU="NA"
                     /idTUdmin="U13"
                     /TUdmin=0
                     /isTUend="TRUE"
                     /label="downshifts"
     promotor_-35    21837..21844
                     /Source="Nicolas_upshift_promotors"
                     /id="U17"
                     /multdbtbs="-"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp="0.861138861138861"
                     /psig=1
                     /xcortree=2413
                     /SigmaFactorBS="cggcattttcataaaaacaaaaaaagtttttaaaaatgCTTG
                     ACCAcacgagaacatacgTGATATAGTTAGTCTTGTCGatacggaggaatacccaagt
                     c"
                     /listShort="trnSL-Ser1, S14, S15"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    21859..21878
                     /Source="Nicolas_upshift_promotors"
                     /id="U17"
                     /multdbtbs="-"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp="0.861138861138861"
                     /psig=1
                     /xcortree=2413
                     /SigmaFactorBS="cggcattttcataaaaacaaaaaaagtttttaaaaatgCTTG
                     ACCAcacgagaacatacgTGATATAGTTAGTCTTGTCGatacggaggaatacccaagt
                     c"
                     /listShort="trnSL-Ser1, S14, S15"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        21859
                     /Source="Nicolas_upshifts"
                     /id="U17"
                     /multdbtbs="-"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp="0.861138861138861"
                     /psig=1
                     /xcortree=2413
                     /SigmaFactorBS="cggcattttcataaaaacaaaaaaagtttttaaaaatgCTTG
                     ACCAcacgagaacatacgTGATATAGTTAGTCTTGTCGatacggaggaatacccaagt
                     c"
                     /listShort="trnSL-Ser1, S14, S15"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     tRNA            21883..21975
                     /gene="trnSL-Ser1"
                     /locus_tag="BSU_tRNA_7"
                     /product="tRNA-Ser"
                     /inference="profile:tRNAscan:1.23"
                     /note="transfer RNA-Ser(UGA); Evidence 2a: Function from
                     experimental evidences in other organisms; Product type n:
                     RNA"
                     /function="16.2: Construct biomass (Anabolism)"
                     /label="trnSL-Ser1 tRNA"
     gene            21883..21975
                     /gene="trnSL-Ser1"
                     /locus_tag="BSU_tRNA_7"
                     /label="trnSL-Ser1 gene"
     downshifts      21998
                     /Source="Nicolas_upshifts"
                     /id="D8"
                     /incds=0
                     /nref=168
                     /ntot=196
                     /MaxReadThrough="5.02201"
                     /MaxDrop="8.36635"
                     /score="29.7083093"
                     /energy="-12.4"
                     /TU="U17"
                     /idTUdmin="U13"
                     /TUdmin=272
                     /isTUend="FALSE"
                     /label="downshifts"
     S_feature       22043..22120
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_22452_22529"
                     /HighExp="Cold, H2O2, G180, Paraq, Oxctl, C30, G150, G135,
                     BMM, Heat"
                     /AntisenseName="dck"
                     /AntisenseCor="0.61769771609764101"
                     /AntisenseRegPval="-29"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig=1
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S14"
     CDS             complement(22087..22740)
                     /gene="dck"
                     /locus_tag="BSU_00140"
                     /old_locus_tag="BSU00140"
                     /EC_number="2.7.1.76"
                     /EC_number="2.7.1.74"
                     /function="16.11: Scavenge (Catabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:6251049, 11078735"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 6251049, 11078735;
                     Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="deoxyadenosine/deoxycytidine kinase"
                     /protein_id="NP_387895.1"
                     /db_xref="EnsemblGenomes-Gn:BSU00140"
                     /db_xref="EnsemblGenomes-Tr:CAB11790"
                     /db_xref="GOA:P37529"
                     /db_xref="InterPro:IPR002624"
                     /db_xref="InterPro:IPR027417"
                     /db_xref="InterPro:IPR031314"
                     /db_xref="SubtiList:BG10078"
                     /db_xref="UniProtKB/Swiss-Prot:P37529"
                     /translation="MKEHHIPKNSIITVAGTVGVGKSTLTKTLAKRLGFKTSLEEVDH
                     NPYLEKFYHDFERWSFHLQIYFLAERFKEQKTIFEAGGGFVQDRSIYEDTGIFAKMHA
                     DKGTMSKVDYKTYTSLFEAMVMTPYFPHPDVLIYLEGDLENILNRIEQRGREMELQTS
                     RSYWEEMHTRYENWISGFNACPVLKLRIEDYDLLNDENSIENIVDQIASVIHDNQKK*
                     "
                     /label="dck CDS"
     gene            complement(22087..22740)
                     /gene="dck"
                     /locus_tag="BSU_00140"
                     /old_locus_tag="BSU00140"
                     /label="dck gene"
     promotor_-35    22106..22112
                     /Source="Nicolas_upshift_promotors"
                     /id="U18"
                     /multdbtbs="-"
                     /comp="M8"
                     /sig="Sig-"
                     /pcomp="0.474525474525474"
                     /psig="0.474525474525474"
                     /xcortree=1189
                     /SigmaFactorBS="agaaaaagtgaatctcgactgagattcactttttttgattat
                     caTGAATAActgaagcaatttgATCTACAATATTttcaatcgagttttcgtcgttcag
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     downshifts      complement(22111)
                     /Source="Nicolas_upshifts"
                     /id="D9"
                     /incds=0
                     /nref=88
                     /ntot=213
                     /MaxReadThrough="1.96668"
                     /MaxDrop="4.49235"
                     /score="14.5948578"
                     /energy="-11"
                     /TU="NA"
                     /idTUdmin="U19"
                     /TUdmin="-1"
                     /isTUend="TRUE"
                     /label="downshifts"
     S_feature       22122..22758
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_22531_23167"
                     /HighExp="G180, G135, Cold, C30, Paraq, H2O2, Oxctl, G150,
                     S5, S6"
                     /AntisenseName="dck"
                     /AntisenseCor="0.15155468296621499"
                     /AntisenseRegPval="-1.9"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig=1
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S15"
     upshifts        22122
                     /Source="Nicolas_upshifts"
                     /id="U18"
                     /multdbtbs="-"
                     /comp="M8"
                     /sig="Sig-"
                     /pcomp="0.474525474525474"
                     /psig="0.474525474525474"
                     /xcortree=1189
                     /SigmaFactorBS="agaaaaagtgaatctcgactgagattcactttttttgattat
                     caTGAATAActgaagcaatttgATCTACAATATTttcaatcgagttttcgtcgttcag
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-10    22126..22137
                     /Source="Nicolas_upshift_promotors"
                     /id="U18"
                     /multdbtbs="-"
                     /comp="M8"
                     /sig="Sig-"
                     /pcomp="0.474525474525474"
                     /psig="0.474525474525474"
                     /xcortree=1189
                     /SigmaFactorBS="agaaaaagtgaatctcgactgagattcactttttttgattat
                     caTGAATAActgaagcaatttgATCTACAATATTttcaatcgagttttcgtcgttcag
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     CDS             complement(22737..23360)
                     /gene="dgk"
                     /locus_tag="BSU_00150"
                     /old_locus_tag="BSU00150"
                     /EC_number="2.7.1.113"
                     /function="16.11: Scavenge (Catabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:11078735"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 11078735; Product type e:
                     enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="deoxyguanosine kinase"
                     /protein_id="NP_387896.1"
                     /db_xref="EnsemblGenomes-Gn:BSU00150"
                     /db_xref="EnsemblGenomes-Tr:CAB11791"
                     /db_xref="GOA:P37530"
                     /db_xref="InterPro:IPR002624"
                     /db_xref="InterPro:IPR027417"
                     /db_xref="InterPro:IPR031314"
                     /db_xref="SubtiList:BG10079"
                     /db_xref="UniProtKB/Swiss-Prot:P37530"
                     /translation="MNTAPFIAIEGPIGAGKTTLATMLSQKFGFPMINEIVEDNPYLD
                     KFYDNIKEWSFQLEMFFLCHRYKQLEDTSDHFLKKGQPVIADYHIYKNVIFAERTLSP
                     HQLEKYKKIYHLLTDDLPKPNFIIYIKASLPTLLHRIEKRGRPFEKKIETSYLEQLIS
                     DYEVAIKQLQEADPELTVLTVDGDSKDFVLNKSDFERIAAHVKELIV*"
                     /label="dgk CDS"
     gene            complement(22737..23360)
                     /gene="dgk"
                     /locus_tag="BSU_00150"
                     /old_locus_tag="BSU00150"
                     /label="dgk gene"
     promotor_-10    complement(23401..23420)
                     /Source="Nicolas_upshift_promotors"
                     /id="U19"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.948051948051948"
                     /psig=1
                     /xcortree=2605
                     /SigmaFactorBS="gtcaaaaagacgtttcgataatttggaaacgtcttttttTCA
                     TGggggcacccaagggtTGTGATACAATATGAAGGTCggtaactgacgcacgtttttc
                     a"
                     /listShort="dgk, dck"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(23419)
                     /Source="Nicolas_upshifts"
                     /id="U19"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.948051948051948"
                     /psig=1
                     /xcortree=2605
                     /SigmaFactorBS="gtcaaaaagacgtttcgataatttggaaacgtcttttttTCA
                     TGggggcacccaagggtTGTGATACAATATGAAGGTCggtaactgacgcacgtttttc
                     a"
                     /listShort="dgk, dck"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(23436..23440)
                     /Source="Nicolas_upshift_promotors"
                     /id="U19"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.948051948051948"
                     /psig=1
                     /xcortree=2605
                     /SigmaFactorBS="gtcaaaaagacgtttcgataatttggaaacgtcttttttTCA
                     TGggggcacccaagggtTGTGATACAATATGAAGGTCggtaactgacgcacgtttttc
                     a"
                     /listShort="dgk, dck"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             complement(23459..24742)
                     /gene="sleL"
                     /locus_tag="BSU_00160"
                     /old_locus_tag="BSU00160"
                     /EC_number="3.2.1.-"
                     /function="16.8: Protect"
                     /function="16.13: Shape"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 1c: Function from experimental evidences
                     in the studied genus; PubMedId: 11011148, 11737650,
                     12177332, 10419957, 18456807, 18835992, 19933362,
                     28333204; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="spore peptidoglycan N-acetylglucosaminidase"
                     /protein_id="NP_387897.1"
                     /db_xref="EnsemblGenomes-Gn:BSU00160"
                     /db_xref="EnsemblGenomes-Tr:CAB11792"
                     /db_xref="GOA:P37531"
                     /db_xref="InterPro:IPR001223"
                     /db_xref="InterPro:IPR011583"
                     /db_xref="InterPro:IPR017853"
                     /db_xref="InterPro:IPR018392"
                     /db_xref="InterPro:IPR036779"
                     /db_xref="SubtiList:BG10080"
                     /db_xref="UniProtKB/Swiss-Prot:P37531"
                     /translation="MVKQGDTLSAIASQYRTTTNDITETNEIPNPDSLVVGQTIVIPI
                     AGQFYDVKRGDTLTSIARQFNTTAAELARVNRIQLNTVLQIGFRLYIPPAPKRDIESN
                     AYLEPRGNQVSENLQQAAREASPYLTYLGAFSFQAQRNGTLVAPPLTNLRSITESQNT
                     TLMMIITNLENQAFSDELGRILLNDETVKRRLLNEIVENARRYGFRDIHFDFEYLRPQ
                     DREAYNQFLREARDLFHREGLEISTALAPKTSATQQGRWYEAHDYRAHGEIVDFVVLM
                     TYEWGYSGGPPQAVSPIGPVRDVIEYALTEMPANKIVMGQNLYGYDWTLPYTAGGTPA
                     RAVSPQQAIVIADQNNASIQYDQTAQAPFFRYTDAENRRHEVWFEDARSIQAKFNLIK
                     ELNLRGISYWKLGLSFPQNWLLLSDQFNVVKKTFR*"
                     /label="sleL CDS"
     gene            complement(23459..24742)
                     /gene="sleL"
                     /locus_tag="BSU_00160"
                     /old_locus_tag="BSU00160"
                     /label="sleL gene"
     downshifts      complement(23496)
                     /Source="Nicolas_upshifts"
                     /id="D10"
                     /incds=0
                     /nref=40
                     /ntot=61
                     /MaxReadThrough="1.17442"
                     /MaxDrop="6.30997"
                     /score="3.66560192"
                     /energy="-8.4"
                     /TU="NA"
                     /idTUdmin="U20"
                     /TUdmin=0
                     /isTUend="TRUE"
                     /label="downshifts"
     promotor_-10    complement(24773..24791)
                     /Source="Nicolas_upshift_promotors"
                     /id="U20"
                     /multdbtbs="SigE"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp=1
                     /psig=1
                     /xcortree=1152
                     /SigmaFactorBS="tttcgcagaaattacgacggaagaacaaattatagaaaaata
                     AACATGatcagcgcttttcttTCATACATTGATAGCGATAtgaaaggaggcgtttttc
                     a"
                     /listShort="yaaH"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(24794)
                     /Source="Nicolas_upshifts"
                     /id="U20"
                     /multdbtbs="SigE"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp=1
                     /psig=1
                     /xcortree=1152
                     /SigmaFactorBS="tttcgcagaaattacgacggaagaacaaattatagaaaaata
                     AACATGatcagcgcttttcttTCATACATTGATAGCGATAtgaaaggaggcgtttttc
                     a"
                     /listShort="yaaH"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(24807..24812)
                     /Source="Nicolas_upshift_promotors"
                     /id="U20"
                     /multdbtbs="SigE"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp=1
                     /psig=1
                     /xcortree=1152
                     /SigmaFactorBS="tttcgcagaaattacgacggaagaacaaattatagaaaaata
                     AACATGatcagcgcttttcttTCATACATTGATAGCGATAtgaaaggaggcgtttttc
                     a"
                     /listShort="yaaH"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             complement(24812..25357)
                     /gene="yaaI"
                     /locus_tag="BSU_00170"
                     /old_locus_tag="BSU00170"
                     /EC_number="3.-.-.-"
                     /function="16.11: Scavenge (Catabolism)"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 2521622; Product type
                     e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative amidase (isochorismatase family)"
                     /protein_id="NP_387898.1"
                     /db_xref="EnsemblGenomes-Gn:BSU00170"
                     /db_xref="EnsemblGenomes-Tr:CAB11793"
                     /db_xref="GOA:P37532"
                     /db_xref="InterPro:IPR000868"
                     /db_xref="InterPro:IPR036380"
                     /db_xref="SubtiList:BG10081"
                     /db_xref="UniProtKB/Swiss-Prot:P37532"
                     /translation="MSKADKALLIVDMINNFEFDMGETLAKKTEKIVPHILSLKEHAR
                     QNEWPIIYINDHYGLWQADIKNIQQECTNERSKDIITKIAPVDADYFLIKPKHSAFYE
                     TALHTLLTELQVRHIIITGIAGNICVLFTANDAYMREYSITIPKDCIASNSDEDNEFA
                     LTMMENVLFAEITTEEQIIEK*"
                     /label="yaaI CDS"
     gene            complement(24812..25357)
                     /gene="yaaI"
                     /locus_tag="BSU_00170"
                     /old_locus_tag="BSU00170"
                     /label="yaaI gene"
     promotor_-35    25223..25227
                     /Source="Nicolas_upshift_promotors"
                     /id="U21"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.78921078921079"
                     /psig="0.99000999000999"
                     /xcortree=1810
                     /SigmaFactorBS="taatgatcattgatgtaaataatcggccattcattTTGTCtc
                     gcgtgctcctttAATGATAAAATATGAGGAACgattttttctgtttttttagcgaggg
                     t"
                     /listShort="S16, tadA, S17, scr, S18"
                     /listLong="dnaX, yaaK, recR, yaaL, bofA, S19, rrnA-16S"
                     /label="promotor_-35"
     promotor_-10    25242..25261
                     /Source="Nicolas_upshift_promotors"
                     /id="U21"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.78921078921079"
                     /psig="0.99000999000999"
                     /xcortree=1810
                     /SigmaFactorBS="taatgatcattgatgtaaataatcggccattcattTTGTCtc
                     gcgtgctcctttAATGATAAAATATGAGGAACgattttttctgtttttttagcgaggg
                     t"
                     /listShort="S16, tadA, S17, scr, S18"
                     /listLong="dnaX, yaaK, recR, yaaL, bofA, S19, rrnA-16S"
                     /label="promotor_-10"
     S_feature       25246..25442
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_25655_25851"
                     /HighExp="Diami, dia5, H2O2, dia15, T0.30H, T-0.40H, HiOs,
                     T-1.10H, Salt, T0.0H"
                     /AntisenseName="yaaI"
                     /AntisenseCor="9.6546810160837798E-2"
                     /AntisenseRegPval="-0.9"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.99"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S16"
     upshifts        25248
                     /Source="Nicolas_upshifts"
                     /id="U21"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.78921078921079"
                     /psig="0.99000999000999"
                     /xcortree=1810
                     /SigmaFactorBS="taatgatcattgatgtaaataatcggccattcattTTGTCtc
                     gcgtgctcctttAATGATAAAATATGAGGAACgattttttctgtttttttagcgaggg
                     t"
                     /listShort="S16, tadA, S17, scr, S18"
                     /listLong="dnaX, yaaK, recR, yaaL, bofA, S19, rrnA-16S"
                     /label="upshifts"
     promotor_-10    complement(25382..25400)
                     /Source="Nicolas_upshift_promotors"
                     /id="U22"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp="0.999000999001"
                     /psig="0.999000999001"
                     /xcortree=248
                     /SigmaFactorBS="aaagttcatcttgtgtcataaggataagctctcttttcaaAG
                     TTTTTtcattgcctaaaaaGGCTACATATTAACTATAActgaaacggaaaggagactg
                     t"
                     /listShort="yaaI, yaaH"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(25401)
                     /Source="Nicolas_upshifts"
                     /id="U22"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp="0.999000999001"
                     /psig="0.999000999001"
                     /xcortree=248
                     /SigmaFactorBS="aaagttcatcttgtgtcataaggataagctctcttttcaaAG
                     TTTTTtcattgcctaaaaaGGCTACATATTAACTATAActgaaacggaaaggagactg
                     t"
                     /listShort="yaaI, yaaH"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(25415..25421)
                     /Source="Nicolas_upshift_promotors"
                     /id="U22"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp="0.999000999001"
                     /psig="0.999000999001"
                     /xcortree=248
                     /SigmaFactorBS="aaagttcatcttgtgtcataaggataagctctcttttcaaAG
                     TTTTTtcattgcctaaaaaGGCTACATATTAACTATAActgaaacggaaaggagactg
                     t"
                     /listShort="yaaI, yaaH"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             25443..25928
                     /gene="tadA"
                     /locus_tag="BSU_00180"
                     /old_locus_tag="BSU00180"
                     /EC_number="3.5.4.33"
                     /function="10.3: tRNA and rRNA base modification"
                     /function="16.2: Construct biomass (Anabolism)"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 2a: Function from experimental evidences
                     in other organisms; PubMedId: 15677468, 16014871,
                     16415880, 16700551, 23658230; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA specific adenosine A34 deaminase"
                     /protein_id="NP_387899.1"
                     /db_xref="EnsemblGenomes-Gn:BSU00180"
                     /db_xref="EnsemblGenomes-Tr:CAB11794"
                     /db_xref="GOA:P21335"
                     /db_xref="InterPro:IPR002125"
                     /db_xref="InterPro:IPR016192"
                     /db_xref="InterPro:IPR016193"
                     /db_xref="InterPro:IPR028883"
                     /db_xref="SubtiList:BG10082"
                     /db_xref="UniProtKB/Swiss-Prot:P21335"
                     /translation="MTQDELYMKEAIKEAKKAEEKGEVPIGAVLVINGEIIARAHNLR
                     ETEQRSIAHAEMLVIDEACKALGTWRLEGATLYVTLEPCPMCAGAVVLSRVEKVVFGA
                     FDPKGGCSGTLMNLLQEERFNHQAEVVSGVLEEECGGMLSAFFRELRKKKKAARKNLS
                     E*"
                     /label="tadA CDS"
     gene            25443..25928
                     /gene="tadA"
                     /locus_tag="BSU_00180"
                     /old_locus_tag="BSU00180"
                     /label="tadA gene"
     promotor_-35    25932..25938
                     /Source="Nicolas_upshift_promotors"
                     /id="U23"
                     /multdbtbs="SigA"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.403596403596404"
                     /psig="0.899100899100899"
                     /xcortree=1436
                     /SigmaFactorBS="aacttgtctgaatagtacGGTTGCAatttttaggggaaACAG
                     ATATACTTAAGTGTGCatcgtaatagatgcaacataaaatttgatatttattttgccg
                     t"
                     /listShort="S17, scr, S18"
                     /listLong="dnaX, yaaK, recR, yaaL, bofA, S19, rrnA-16S"
                     /label="promotor_-35"
     promotor_-10    25952..25971
                     /Source="Nicolas_upshift_promotors"
                     /id="U23"
                     /multdbtbs="SigA"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.403596403596404"
                     /psig="0.899100899100899"
                     /xcortree=1436
                     /SigmaFactorBS="aacttgtctgaatagtacGGTTGCAatttttaggggaaACAG
                     ATATACTTAAGTGTGCatcgtaatagatgcaacataaaatttgatatttattttgccg
                     t"
                     /listShort="S17, scr, S18"
                     /listLong="dnaX, yaaK, recR, yaaL, bofA, S19, rrnA-16S"
                     /label="promotor_-10"
     misc_RNA        25970..26323
                     /gene="scr"
                     /locus_tag="BSU_misc_RNA_2"
                     /product="small cytoplasmic RNA (scRNA, 4.5S RNA), signal
                     recognition particle-like (SRP) component"
                     /experiment="publication(s) with functional evidences,
                     PMID:1372600, 1689715"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 1372600, 1689715"
                     /label="scr RNA"
     gene            25970..26323
                     /gene="scr"
                     /locus_tag="BSU_misc_RNA_2"
                     /label="scr gene"
     S_feature       25974..26123
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_26383_26532"
                     /HighExp="T1.0H, T5.0H, T1.30H, T3.30H, T3.0H, T2.30H,
                     T4.0H, S8, T-1.10H, Sw"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA, SigA"
                     /TUshortPSig="0.899, 0.99"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S17"
     upshifts        25974
                     /Source="Nicolas_upshifts"
                     /id="U23"
                     /multdbtbs="SigA"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.403596403596404"
                     /psig="0.899100899100899"
                     /xcortree=1436
                     /SigmaFactorBS="aacttgtctgaatagtacGGTTGCAatttttaggggaaACAG
                     ATATACTTAAGTGTGCatcgtaatagatgcaacataaaatttgatatttattttgccg
                     t"
                     /listShort="S17, scr, S18"
                     /listLong="dnaX, yaaK, recR, yaaL, bofA, S19, rrnA-16S"
                     /label="upshifts"
     S_feature       26227..26322
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_26636_26731"
                     /HighExp="S8, Sw, B60, B36, T2.30H, T3.30H, T1.0H, BC,
                     T4.0H, T3.0H"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA, SigA"
                     /TUshortPSig="0.899, 0.99"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S18"
     downshifts      26279
                     /Source="Nicolas_upshifts"
                     /id="D11"
                     /incds=0
                     /nref=273
                     /ntot=278
                     /MaxReadThrough="4.46774"
                     /MaxDrop="8.31255"
                     /score="23.257527"
                     /energy="-10.3"
                     /TU="U21,U23"
                     /idTUdmin="U21"
                     /TUdmin="-89"
                     /isTUend="FALSE"
                     /label="downshifts"
     promotor_-35    26343..26346
                     /Source="Nicolas_upshift_promotors"
                     /id="U24"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.863136863136863"
                     /psig=1
                     /xcortree=2612
                     /SigmaFactorBS="attaggtgagttttttgttatgtaaaaagagctTTTGgaatc
                     gaaacaaggTTCATGTATAATGGGAATGAtgaataacggaggagggcaaacccgtgag
                     t"
                     /listShort="dnaX, yaaK, recR, yaaL, bofA"
                     /listLong="S19, rrnA-16S"
                     /label="promotor_-35"
     promotor_-10    26361..26380
                     /Source="Nicolas_upshift_promotors"
                     /id="U24"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.863136863136863"
                     /psig=1
                     /xcortree=2612
                     /SigmaFactorBS="attaggtgagttttttgttatgtaaaaagagctTTTGgaatc
                     gaaacaaggTTCATGTATAATGGGAATGAtgaataacggaggagggcaaacccgtgag
                     t"
                     /listShort="dnaX, yaaK, recR, yaaL, bofA"
                     /listLong="S19, rrnA-16S"
                     /label="promotor_-10"
     upshifts        26370
                     /Source="Nicolas_upshifts"
                     /id="U24"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.863136863136863"
                     /psig=1
                     /xcortree=2612
                     /SigmaFactorBS="attaggtgagttttttgttatgtaaaaagagctTTTGgaatc
                     gaaacaaggTTCATGTATAATGGGAATGAtgaataacggaggagggcaaacccgtgag
                     t"
                     /listShort="dnaX, yaaK, recR, yaaL, bofA"
                     /listLong="S19, rrnA-16S"
                     /label="upshifts"
     CDS             26405..28096
                     /gene="dnaX"
                     /locus_tag="BSU_00190"
                     /old_locus_tag="BSU00190"
                     /EC_number="2.7.7.7"
                     /function="16.9: Replicate"
                     /experiment="publication(s) with functional evidences,
                     PMID:9341154, 10844689, 12466528, 12974630, 14757052,
                     15927750, 25850333, 26786318"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 9341154, 10844689,
                     12466528, 12974630, 14757052, 15927750, 25850333,
                     26786318; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit tau subunit"
                     /protein_id="NP_387900.2"
                     /db_xref="EnsemblGenomes-Gn:BSU00190"
                     /db_xref="EnsemblGenomes-Tr:CAB11795"
                     /db_xref="GOA:P09122"
                     /db_xref="InterPro:IPR001270"
                     /db_xref="InterPro:IPR003593"
                     /db_xref="InterPro:IPR008921"
                     /db_xref="InterPro:IPR012763"
                     /db_xref="InterPro:IPR022754"
                     /db_xref="InterPro:IPR027417"
                     /db_xref="SubtiList:BG10083"
                     /db_xref="UniProtKB/Swiss-Prot:P09122"
                     /translation="MSYQALYRVFRPQRFEDVVGQEHITKTLQNALLQKKFSHAYLFS
                     GPRGTGKTSAAKIFAKAVNCEHAPVDEPCNECAACKGITNGSISDVIEIDAASNNGVD
                     EIRDIRDKVKFAPSAVTYKVYIIDEVHMLSIGAFNALLKTLEEPPEHCIFILATTEPH
                     KIPLTIISRCQRFDFKRITSQAIVGRMNKIVDAEQLQVEEGSLEIIASAADGGMRDAL
                     SLLDQAISFSGDILKVEDALLITGAVSQLYIGKLAKSLHDKNVSDALETLNELLQQGK
                     DPAKLIEDMIFYFRDMLLYKTAPGLEGVLEKVKVDETFRELSEQIPAQALYEMIDILN
                     KSHQEMKWTNHPRIFFEVAVVKICQTSHQSAADLPEVDMLMKKIQQLEQEVERLKTTG
                     IKAAAESPKKEAPRVPKGGKSNYKAPVGRIHEILKEATRPDLDLLRNSWGKLLAHLKQ
                     QNKVSHAALLNDSEPVAAGSAAFVLKFKYEIHCKMVAEDNNGVRTNLEQILESMLGKR
                     MDLIGVPEAQWGKIREEFLEDHQQENEGSNEPAEEDPLIAEAKKLVGADLIEIKD*"
                     /label="dnaX CDS"
     gene            26405..28096
                     /gene="dnaX"
                     /locus_tag="BSU_00190"
                     /old_locus_tag="BSU00190"
                     /label="dnaX gene"
     promotor_-35    27937..27944
                     /Source="Nicolas_upshift_promotors"
                     /id="U25"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.761238761238761"
                     /psig="0.999000999001"
                     /xcortree=1923
                     /SigmaFactorBS="atgctcggaaaaagaatggatttGATTGGCGttccagaagca
                     caaTGGGGTAAAATAAGAGAAGAatttttagaagatcatcagcaggaaaatgaaggat
                     c"
                     /listShort="yaaK, recR, yaaL, bofA"
                     /listLong="S19, rrnA-16S"
                     /label="promotor_-35"
     promotor_-10    27959..27978
                     /Source="Nicolas_upshift_promotors"
                     /id="U25"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.761238761238761"
                     /psig="0.999000999001"
                     /xcortree=1923
                     /SigmaFactorBS="atgctcggaaaaagaatggatttGATTGGCGttccagaagca
                     caaTGGGGTAAAATAAGAGAAGAatttttagaagatcatcagcaggaaaatgaaggat
                     c"
                     /listShort="yaaK, recR, yaaL, bofA"
                     /listLong="S19, rrnA-16S"
                     /label="promotor_-10"
     upshifts        27974
                     /Source="Nicolas_upshifts"
                     /id="U25"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.761238761238761"
                     /psig="0.999000999001"
                     /xcortree=1923
                     /SigmaFactorBS="atgctcggaaaaagaatggatttGATTGGCGttccagaagca
                     caaTGGGGTAAAATAAGAGAAGAatttttagaagatcatcagcaggaaaatgaaggat
                     c"
                     /listShort="yaaK, recR, yaaL, bofA"
                     /listLong="S19, rrnA-16S"
                     /label="upshifts"
     CDS             28120..28443
                     /gene="ebfC"
                     /locus_tag="BSU_00200"
                     /old_locus_tag="BSU00200"
                     /function="16.9: Replicate"
                     /function="16.3: Control"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 2a: Function from experimental evidences
                     in other organisms; PubMedId: 16740939, 19208644,
                     19594923, 20639362, 22333191, 22544270; Product type f :
                     factor"
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoid associated protein"
                     /protein_id="NP_387901.1"
                     /db_xref="EnsemblGenomes-Gn:BSU00200"
                     /db_xref="EnsemblGenomes-Tr:CAB11796"
                     /db_xref="GOA:P24281"
                     /db_xref="InterPro:IPR004401"
                     /db_xref="InterPro:IPR036894"
                     /db_xref="SubtiList:BG10084"
                     /db_xref="UniProtKB/Swiss-Prot:P24281"
                     /translation="MRGGMGNMQKMMKQMQKMQKDMAKAQEELAEKVVEGTAGGGMVT
                     VKANGQKEILDVIIKEEVVDPEDIDMLQDLVLAATNEALKKVDEITNETMGQFTKGMN
                     MPGLF*"
                     /label="ebfC CDS"
     gene            28120..28443
                     /gene="ebfC"
                     /locus_tag="BSU_00200"
                     /old_locus_tag="BSU00200"
                     /label="ebfC gene"
     CDS             28458..29054
                     /gene="recR"
                     /locus_tag="BSU_00210"
                     /old_locus_tag="BSU00210"
                     /function="16.6: Maintain"
                     /experiment="publication(s) with functional evidences,
                     PMID:12065426, 24285298, 24891441"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 12065426, 24285298,
                     24891441; Product type f: factor"
                     /codon_start=1
                     /transl_table=11
                     /product="recA filament-DNA complex stabilisation factor"
                     /protein_id="NP_387902.1"
                     /db_xref="EnsemblGenomes-Gn:BSU00210"
                     /db_xref="EnsemblGenomes-Tr:CAB11797"
                     /db_xref="GOA:P24277"
                     /db_xref="InterPro:IPR000093"
                     /db_xref="InterPro:IPR006171"
                     /db_xref="InterPro:IPR015967"
                     /db_xref="InterPro:IPR023170"
                     /db_xref="InterPro:IPR023627"
                     /db_xref="InterPro:IPR023628"
                     /db_xref="InterPro:IPR034137"
                     /db_xref="SubtiList:BG10085"
                     /db_xref="UniProtKB/Swiss-Prot:P24277"
                     /translation="MQYPEPISKLIDSFMKLPGIGPKTAVRLAFFVLGMKEDVVLDFA
                     KALVNAKRNLTYCSVCGHITDQDPCYICEDTRRDKSVICVVQDPKDVIAMEKMKEYNG
                     QYHVLHGAISPMDGIGPEDIKIPELLKRLQDDQVTEVILATNPNIEGEATAMYISRLL
                     KPSGIKLSRIAHGLPVGGDLEYADEVTLSKALEGRREL*"
                     /label="recR CDS"
     gene            28458..29054
                     /gene="recR"
                     /locus_tag="BSU_00210"
                     /old_locus_tag="BSU00210"
                     /label="recR gene"
     CDS             29072..29296
                     /gene="yaaL"
                     /locus_tag="BSU_00220"
                     /old_locus_tag="BSU00220"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved protein of unknown function"
                     /protein_id="NP_387903.1"
                     /db_xref="EnsemblGenomes-Gn:BSU00220"
                     /db_xref="EnsemblGenomes-Tr:CAB11798"
                     /db_xref="InterPro:IPR019644"
                     /db_xref="SubtiList:BG10086"
                     /db_xref="UniProtKB/Swiss-Prot:P37533"
                     /translation="MGFLRKKTLRREFDEKLTEQLFKQKEEWNRQKKLVEKSLEPSAE
                     VLYELKVAEAKYFFYLREAKQRNLKISRWK*"
                     /label="yaaL CDS"
     gene            29072..29296
                     /gene="yaaL"
                     /locus_tag="BSU_00220"
                     /old_locus_tag="BSU00220"
                     /label="yaaL gene"
     promotor_-35    29299..29304
                     /Source="Nicolas_upshift_promotors"
                     /id="U26"
                     /multdbtbs="SigE"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp=1
                     /psig=1
                     /xcortree=1161
                     /SigmaFactorBS="aagcgaagcagcgaaatttaaaaatcagccggtggaagtaag
                     tGGTCTAaactcctggatcttcTCATAAGCTTGTACTAGAAcaagcgaaggagatgag
                     a"
                     /listShort="bofA, S19"
                     /listLong="rrnA-16S"
                     /label="promotor_-35"
     upshifts        29316
                     /Source="Nicolas_upshifts"
                     /id="U26"
                     /multdbtbs="SigE"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp=1
                     /psig=1
                     /xcortree=1161
                     /SigmaFactorBS="aagcgaagcagcgaaatttaaaaatcagccggtggaagtaag
                     tGGTCTAaactcctggatcttcTCATAAGCTTGTACTAGAAcaagcgaaggagatgag
                     a"
                     /listShort="bofA, S19"
                     /listLong="rrnA-16S"
                     /label="upshifts"
     promotor_-10    29320..29338
                     /Source="Nicolas_upshift_promotors"
                     /id="U26"
                     /multdbtbs="SigE"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp=1
                     /psig=1
                     /xcortree=1161
                     /SigmaFactorBS="aagcgaagcagcgaaatttaaaaatcagccggtggaagtaag
                     tGGTCTAaactcctggatcttcTCATAAGCTTGTACTAGAAcaagcgaaggagatgag
                     a"
                     /listShort="bofA, S19"
                     /listLong="rrnA-16S"
                     /label="promotor_-10"
     CDS             29363..29626
                     /gene="bofA"
                     /locus_tag="BSU_00230"
                     /old_locus_tag="BSU00230"
                     /function="16.3: Control"
                     /experiment="publication(s) with functional evidences,
                     PMID:15087499, 17557826"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 15087499, 17557826;
                     Product type r: regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="inhibitor of the pro-sigma(K) processing
                     machinery"
                     /protein_id="NP_387904.2"
                     /db_xref="EnsemblGenomes-Gn:BSU00230"
                     /db_xref="EnsemblGenomes-Tr:CAB11799"
                     /db_xref="GOA:P24282"
                     /db_xref="InterPro:IPR010001"
                     /db_xref="SubtiList:BG10087"
                     /db_xref="UniProtKB/Swiss-Prot:P24282"
                     /translation="MEPIFIIGIILGLVILLFLSGSAAKPLKWIGITAVKFVAGALLL
                     VCVNMFGGSLGIHVPINLVTTAISGILGIPGIAALVVIKQFII*"
                     /label="bofA CDS"
     gene            29363..29626
                     /gene="bofA"
                     /locus_tag="BSU_00230"
                     /old_locus_tag="BSU00230"
                     /label="bofA gene"
     promotor_-35    29639..29646
                     /Source="Nicolas_upshift_promotors"
                     /id="U27"
                     /multdbtbs="SigA"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp="0.999000999001"
                     /psig=1
                     /xcortree=2620
                     /SigmaFactorBS="ttaagcaatttatcatttaattgatattatgtATTGACTTag
                     acaactgaaggTGTTATTCTAATATACGTCGctgatgacgaacagcttttttgaaaag
                     a"
                     /listShort="S19, rrnA-16S"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    29660..29679
                     /Source="Nicolas_upshift_promotors"
                     /id="U27"
                     /multdbtbs="SigA"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp="0.999000999001"
                     /psig=1
                     /xcortree=2620
                     /SigmaFactorBS="ttaagcaatttatcatttaattgatattatgtATTGACTTag
                     acaactgaaggTGTTATTCTAATATACGTCGctgatgacgaacagcttttttgaaaag
                     a"
                     /listShort="S19, rrnA-16S"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     S_feature       29667..29869
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_30076_30278"
                     /HighExp="LBGstat, Diami, C30, H2O2, Oxctl, HPh, BMM, GM
                     120, Paraq, T0.30H"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA, SigEF"
                     /TUshortPSig="1, 1"
                     /TUlongSig="SigA, SigA, SigA, SigA"
                     /TUlongPSig="0.999, 1, 0.899, 0.99"
                     /label="S19"
     upshifts        29667
                     /Source="Nicolas_upshifts"
                     /id="U27"
                     /multdbtbs="SigA"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp="0.999000999001"
                     /psig=1
                     /xcortree=2620
                     /SigmaFactorBS="ttaagcaatttatcatttaattgatattatgtATTGACTTag
                     acaactgaaggTGTTATTCTAATATACGTCGctgatgacgaacagcttttttgaaaag
                     a"
                     /listShort="S19, rrnA-16S"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     rRNA            29870..31423
                     /gene="rrnA-16S"
                     /locus_tag="BSU_rRNA_4"
                     /product="ribosomal RNA-16S"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; Product type n: RNA"
                     /function="16.2: Construct biomass (Anabolism)"
                     /label="rrnA-16S"
     gene            29870..31423
                     /gene="rrnA-16S"
                     /locus_tag="BSU_rRNA_4"
                     /label="rrnA-16S gene"
     tRNA            31523..31599
                     /gene="trnA-Ile"
                     /locus_tag="BSU_tRNA_8"
                     /product="tRNA-Ile"
                     /inference="profile:tRNAscan:1.23"
                     /note="transfer RNA-Ile(GAU); Evidence 2a: Function from
                     experimental evidences in other organisms; Product type n:
                     RNA"
                     /function="16.2: Construct biomass (Anabolism)"
                     /label="trnA-Ile"
     gene            31523..31599
                     /gene="trnA-Ile"
                     /locus_tag="BSU_tRNA_8"
                     /label="trnA-Ile gene"
     tRNA            31611..31686
                     /gene="trnA-Ala"
                     /locus_tag="BSU_tRNA_9"
                     /product="tRNA-Ala"
                     /inference="profile:tRNAscan:1.23"
                     /note="transfer RNA-Ala(UGC); Evidence 2a: Function from
                     experimental evidences in other organisms; Product type n:
                     RNA"
                     /function="16.2: Construct biomass (Anabolism)"
                     /label="trnA-Ala"
     gene            31611..31686
                     /gene="trnA-Ala"
                     /locus_tag="BSU_tRNA_9"
                     /label="trnA-Ala gene"
     rRNA            31768..34694
                     /gene="rrnA-23S"
                     /locus_tag="BSU_rRNA_5"
                     /product="ribosomal RNA-23S"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; Product type n: RNA"
                     /function="16.2: Construct biomass (Anabolism)"
                     /label="rrnA-23S"
     gene            31768..34694
                     /gene="rrnA-23S"
                     /locus_tag="BSU_rRNA_5"
                     /label="rrnA-23S gene"
     S_feature       34695..34827
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_35104_35236"
                     /HighExp="LBGstat, G135, Oxctl, C30, HPh, Paraq, G180,
                     LPh, T0.30H, H2O2"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="NA"
                     /TUshortPSig="NA"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S20"
     rRNA            34828..34946
                     /gene="rrnA-5S"
                     /locus_tag="BSU_rRNA_26"
                     /product="ribosomal RNA-5S"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; Product type n: RNA"
                     /function="16.2: Construct biomass (Anabolism)"
                     /label="rrnA-5S"
     gene            34828..34946
                     /gene="rrnA-5S"
                     /locus_tag="BSU_rRNA_26"
                     /label="rrnA-5S gene"
     S_feature       34947..35049
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_35356_35458"
                     /HighExp="Oxctl, Paraq, H2O2, LBGstat, C30, G180, Cold,
                     G135, Heat, BMM"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="NA"
                     /TUshortPSig="NA"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S21"
     promotor_-35    35010..35018
                     /Source="Nicolas_upshift_promotors"
                     /id="U28"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp="0.715284715284715"
                     /psig="0.715284715284715"
                     /xcortree=1057
                     /SigmaFactorBS="cgagaaaatcaaacaaataCAAACACCGagggcttatatagC
                     CCATATACTGATTTAAAGTttcaaaaaggtctaaatagtgtatacaatatccgtttta
                     a"
                     /listShort="csfB, xpaC, yaaN, S22, yaaO, tmk"
                     /listLong="yaaQ, yaaR, holB, yaaT"
                     /label="promotor_-35"
     promotor_-10    35032..35051
                     /Source="Nicolas_upshift_promotors"
                     /id="U28"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp="0.715284715284715"
                     /psig="0.715284715284715"
                     /xcortree=1057
                     /SigmaFactorBS="cgagaaaatcaaacaaataCAAACACCGagggcttatatagC
                     CCATATACTGATTTAAAGTttcaaaaaggtctaaatagtgtatacaatatccgtttta
                     a"
                     /listShort="csfB, xpaC, yaaN, S22, yaaO, tmk"
                     /listLong="yaaQ, yaaR, holB, yaaT"
                     /label="promotor_-10"
     upshifts        35051
                     /Source="Nicolas_upshifts"
                     /id="U28"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp="0.715284715284715"
                     /psig="0.715284715284715"
                     /xcortree=1057
                     /SigmaFactorBS="cgagaaaatcaaacaaataCAAACACCGagggcttatatagC
                     CCATATACTGATTTAAAGTttcaaaaaggtctaaatagtgtatacaatatccgtttta
                     a"
                     /listShort="csfB, xpaC, yaaN, S22, yaaO, tmk"
                     /listLong="yaaQ, yaaR, holB, yaaT"
                     /label="upshifts"
     CDS             35122..35316
                     /gene="csfB"
                     /locus_tag="BSU_00240"
                     /old_locus_tag="BSU00240"
                     /function="16.5: Explore"
                     /experiment="publication(s) with functional evidences,
                     PMID:8759874, 15044948, 21935351, 26929302"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 8759874, 15044948,
                     21935351, 26929302; Product type cp: cell process"
                     /codon_start=1
                     /transl_table=11
                     /product="forespore-specific anti-sigma factor"
                     /protein_id="NP_387905.1"
                     /db_xref="EnsemblGenomes-Gn:BSU00240"
                     /db_xref="EnsemblGenomes-Tr:CAB11800"
                     /db_xref="GOA:P37534"
                     /db_xref="InterPro:IPR019700"
                     /db_xref="SubtiList:BG10088"
                     /db_xref="UniProtKB/Swiss-Prot:P37534"
                     /translation="MDETVKLNHTCVICDQEKNRGIHLYTKFICLDCERKVISTSTSD
                     PDYAFYVKKLKSIHTPPLYS*"
                     /label="csfB CDS"
     gene            35122..35316
                     /gene="csfB"
                     /locus_tag="BSU_00240"
                     /old_locus_tag="BSU00240"
                     /label="csfB gene"
     downshifts      35300
                     /Source="Nicolas_upshifts"
                     /id="D12"
                     /incds=0
                     /nref=79
                     /ntot=215
                     /MaxReadThrough="5.37774"
                     /MaxDrop="4.42494"
                     /score="22.3916007"
                     /energy="-6.7"
                     /TU="U28"
                     /idTUdmin="U27"
                     /TUdmin=3938
                     /isTUend="FALSE"
                     /label="downshifts"
     promotor_-35    35361..35370
                     /Source="Nicolas_upshift_promotors"
                     /id="U29"
                     /multdbtbs="SigW"
                     /comp="M9"
                     /sig="SigWXY"
                     /pcomp="0.984015984015984"
                     /psig="0.984015984015984"
                     /xcortree=1675
                     /SigmaFactorBS="tctttttttgtactcttaataataaaaagaagaTGAAACTTG
                     TttaaggattgaACGTAGTAGATAATAAtattaaaactgagtatagacacaggagtcg
                     a"
                     /listShort="xpaC, yaaN, S22, yaaO, tmk, yaaQ, yaaR, holB,
                     yaaT, yabA, yabB, yazA, yabC"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    35382..35397
                     /Source="Nicolas_upshift_promotors"
                     /id="U29"
                     /multdbtbs="SigW"
                     /comp="M9"
                     /sig="SigWXY"
                     /pcomp="0.984015984015984"
                     /psig="0.984015984015984"
                     /xcortree=1675
                     /SigmaFactorBS="tctttttttgtactcttaataataaaaagaagaTGAAACTTG
                     TttaaggattgaACGTAGTAGATAATAAtattaaaactgagtatagacacaggagtcg
                     a"
                     /listShort="xpaC, yaaN, S22, yaaO, tmk, yaaQ, yaaR, holB,
                     yaaT, yabA, yabB, yazA, yabC"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        35388
                     /Source="Nicolas_upshifts"
                     /id="U29"
                     /multdbtbs="SigW"
                     /comp="M9"
                     /sig="SigWXY"
                     /pcomp="0.984015984015984"
                     /psig="0.984015984015984"
                     /xcortree=1675
                     /SigmaFactorBS="tctttttttgtactcttaataataaaaagaagaTGAAACTTG
                     TttaaggattgaACGTAGTAGATAATAAtattaaaactgagtatagacacaggagtcg
                     a"
                     /listShort="xpaC, yaaN, S22, yaaO, tmk, yaaQ, yaaR, holB,
                     yaaT, yabA, yabB, yazA, yabC"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             35436..36050
                     /gene="xpaC"
                     /locus_tag="BSU_00250"
                     /old_locus_tag="BSU00250"
                     /function="16.11: Scavenge (Catabolism)"
                     /function="16.3: Control"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 23155385; Product type
                     e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative phosphatase"
                     /protein_id="NP_387906.1"
                     /db_xref="EnsemblGenomes-Gn:BSU00250"
                     /db_xref="EnsemblGenomes-Tr:CAB11801"
                     /db_xref="GOA:P37467"
                     /db_xref="InterPro:IPR018770"
                     /db_xref="SubtiList:BG10089"
                     /db_xref="UniProtKB/Swiss-Prot:P37467"
                     /translation="MQRFFHFLVWSLTSSATFVFIGILSFFGLNQSIFLSIVYGLASG
                     AAVYIAGIWNARRLFLKKHELTGREYAYIKKNLEEARQKMVRLRKALFQAKSIQMFKQ
                     NAEMLRIVRRIYLLTKKEPKRFYQAERFFYQTLDSVVELTEKYAFLSSHPKKSKELSM
                     SLSETRITLTELTKRLEEDLTQAMGDEIDELQFELDAAKHSLKK*"
                     /label="xpaC CDS"
     gene            35436..36050
                     /gene="xpaC"
                     /locus_tag="BSU_00250"
                     /old_locus_tag="BSU00250"
                     /label="xpaC gene"
     CDS             36069..37229
                     /gene="yaaN"
                     /locus_tag="BSU_00260"
                     /old_locus_tag="BSU00260"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms; PubMedId: 12533473, 20713661"
                     /codon_start=1
                     /transl_table=11
                     /product="putative toxic compound resistance protein"
                     /protein_id="NP_387907.1"
                     /db_xref="EnsemblGenomes-Gn:BSU00260"
                     /db_xref="EnsemblGenomes-Tr:CAB11802"
                     /db_xref="InterPro:IPR008863"
                     /db_xref="SubtiList:BG10090"
                     /db_xref="UniProtKB/Swiss-Prot:P37535"
                     /translation="MNRDQSDLHIDELLADPFGGNIEIPGSEAVKAEKEQVRLVDVLP
                     EENKEKAIQLAGQIDHKNMQSIVLYGSQAQSKLLNFSHDMINHVQKKDVGEIGEILGE
                     LMKKLEQVNPDDLQSKKKGFLARMFGRVSSSLQEVLSKYQKTSVQIDRISLKLEHSKN
                     ALISDNKLLEQLYEKNKEYFAALNVYIAAGELKLEELKTKTIPELKQQAESSDHNQMA
                     VQEVNDLIQFADRLDKRVHDLLLSRQITIQSAPQIRLIQNTNQALAEKIQSSIVTAIP
                     LWKNQVAIALTLLRQRNAVDAQQKVSDTTNELLLKNAELLKTNTIETARANERGLVDI
                     DTLKKVQESLISTLEETLTIQEEGRIKRRQAEEELMMMEGDLKQKLITIKER*"
                     /label="yaaN CDS"
     gene            36069..37229
                     /gene="yaaN"
                     /locus_tag="BSU_00260"
                     /old_locus_tag="BSU00260"
                     /label="yaaN gene"
     S_feature       37230..37310
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_37639_37719"
                     /HighExp="T0.0H, T-0.40H, T0.30H, T-1.10H, T-1.40H, Salt,
                     T1.0H, G150, Diami, G135"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigWXY, SigK"
                     /TUshortPSig="0.984, 0.715"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S22"
     CDS             37311..38753
                     /gene="yaaO"
                     /locus_tag="BSU_00270"
                     /old_locus_tag="BSU00270"
                     /EC_number="4.1.1.-"
                     /function="16.11: Scavenge (Catabolism)"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 9723923, 20876533,
                     24529384; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative decarboxylase"
                     /protein_id="NP_387908.1"
                     /db_xref="EnsemblGenomes-Gn:BSU00270"
                     /db_xref="EnsemblGenomes-Tr:CAB11803"
                     /db_xref="GOA:P37536"
                     /db_xref="InterPro:IPR000310"
                     /db_xref="InterPro:IPR008286"
                     /db_xref="InterPro:IPR015421"
                     /db_xref="InterPro:IPR015422"
                     /db_xref="InterPro:IPR015424"
                     /db_xref="InterPro:IPR036633"
                     /db_xref="SubtiList:BG10091"
                     /db_xref="UniProtKB/Swiss-Prot:P37536"
                     /translation="MNTPLYKALIQHARRNSHSFHVPGHHNGDVFFDDAKSIFDPLLT
                     IDVTELAGLDDLHHPSGVIKEAQELASQLYGSAESFFLVNGTTVGNLAMILSVCEPGD
                     TILVQRNCHKSVFHAVDLSGAEPVYLAPDVDSAMHVPTHVPLGTIKEALEAYPDAKGL
                     VLTNPTYYGHSADLTEIITEAHHYGIPVLVDEAHGAHFILGEPFPVSALKMGADIVVQ
                     SAHKTLPAMTMGSYLHLNSSCRINRDRVAEYLNRLQSSSPSYPIMASLDIARAYVQHI
                     IEEQKLSDILQRIETLKQTFDSLTNAEAVNPANPLIITDPLKLTIRSKRGHSGYTLQS
                     ILERANIFTELADENQVLLVLPLGGKRRINAEIIRSIDEEIEKTPPDQTFVSAEWGVQ
                     PVTVLPYPKKVLHSFKKEYVSFEEAAGRLNAEDIIPYPPGIPMIMAGERITKESVQKL
                     SRLISMKTHVQGNMKIKEKQLLVYIEEEKS*"
                     /label="yaaO CDS"
     gene            37311..38753
                     /gene="yaaO"
                     /locus_tag="BSU_00270"
                     /old_locus_tag="BSU00270"
                     /label="yaaO gene"
     promotor_-35    38673..38679
                     /Source="Nicolas_upshift_promotors"
                     /id="U30"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp="0.513486513486514"
                     /psig="0.513486513486514"
                     /xcortree=105
                     /SigmaFactorBS="gaaagtgtgcaaaagctcagccgcttgatcAGCATGAaaacg
                     catgttcaaGGGAATATGAAAATCAAAGagaaacaactacttgtttatatagaagagg
                     a"
                     /listShort="tmk"
                     /listLong="yaaQ, yaaR, holB, yaaT, yabA, yabB, yazA, yabC"
                     /label="promotor_-35"
     promotor_-10    38694..38712
                     /Source="Nicolas_upshift_promotors"
                     /id="U30"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp="0.513486513486514"
                     /psig="0.513486513486514"
                     /xcortree=105
                     /SigmaFactorBS="gaaagtgtgcaaaagctcagccgcttgatcAGCATGAaaacg
                     catgttcaaGGGAATATGAAAATCAAAGagaaacaactacttgtttatatagaagagg
                     a"
                     /listShort="tmk"
                     /listLong="yaaQ, yaaR, holB, yaaT, yabA, yabB, yazA, yabC"
                     /label="promotor_-10"
     upshifts        38703
                     /Source="Nicolas_upshifts"
                     /id="U30"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp="0.513486513486514"
                     /psig="0.513486513486514"
                     /xcortree=105
                     /SigmaFactorBS="gaaagtgtgcaaaagctcagccgcttgatcAGCATGAaaacg
                     catgttcaaGGGAATATGAAAATCAAAGagaaacaactacttgtttatatagaagagg
                     a"
                     /listShort="tmk"
                     /listLong="yaaQ, yaaR, holB, yaaT, yabA, yabB, yazA, yabC"
                     /label="upshifts"
     CDS             38750..39388
                     /gene="tmk"
                     /locus_tag="BSU_00280"
                     /old_locus_tag="BSU00280"
                     /EC_number="2.7.4.9"
                     /function="16.2: Construct biomass (Anabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:9696781, 12682299, 18523102"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 9696781, 12682299,
                     18523102; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="thymidylate kinase"
                     /protein_id="NP_387909.2"
                     /db_xref="EnsemblGenomes-Gn:BSU00280"
                     /db_xref="EnsemblGenomes-Tr:CAB11804"
                     /db_xref="GOA:P37537"
                     /db_xref="InterPro:IPR018094"
                     /db_xref="InterPro:IPR018095"
                     /db_xref="InterPro:IPR027417"
                     /db_xref="SubtiList:BG10092"
                     /db_xref="UniProtKB/Swiss-Prot:P37537"
                     /translation="MSGLFITFEGPEGAGKTTVLQEIKNILTAEGLQVMATREPGGID
                     IAEQIREVILNENNILMDPKTEALLYAAARRQHLVEKVKPALEQGFIVLCDRFIDSSL
                     AYQGYARGLGIDEVLSINEFAIGDMMPHVTVYFSIDPEEGLKRIYANGSREKNRLDLE
                     KLDFHTKVQEGYQELMKRFPERFHSVDAGQSKDLVVQDVLKVIDEALKKIQL*"
                     /label="tmk CDS"
     gene            38750..39388
                     /gene="tmk"
                     /locus_tag="BSU_00280"
                     /old_locus_tag="BSU00280"
                     /label="tmk gene"
     promotor_-35    39383..39390
                     /Source="Nicolas_upshift_promotors"
                     /id="U31"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.478521478521479"
                     /psig="0.964035964035964"
                     /xcortree=91
                     /SigmaFactorBS="tgatcgatgaagcgttgaaaaaaattcaaTTGTGACCtgttt
                     cccaataGTTGATATAATAATGTAAACgagatcacgttgtttccaatctaaaggaggc
                     c"
                     /listShort="yaaQ, yaaR, holB, yaaT, yabA, yabB, yazA,
                     yabC"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    39403..39422
                     /Source="Nicolas_upshift_promotors"
                     /id="U31"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.478521478521479"
                     /psig="0.964035964035964"
                     /xcortree=91
                     /SigmaFactorBS="tgatcgatgaagcgttgaaaaaaattcaaTTGTGACCtgttt
                     cccaataGTTGATATAATAATGTAAACgagatcacgttgtttccaatctaaaggaggc
                     c"
                     /listShort="yaaQ, yaaR, holB, yaaT, yabA, yabB, yazA,
                     yabC"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        39414
                     /Source="Nicolas_upshifts"
                     /id="U31"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.478521478521479"
                     /psig="0.964035964035964"
                     /xcortree=91
                     /SigmaFactorBS="tgatcgatgaagcgttgaaaaaaattcaaTTGTGACCtgttt
                     cccaataGTTGATATAATAATGTAAACgagatcacgttgtttccaatctaaaggaggc
                     c"
                     /listShort="yaaQ, yaaR, holB, yaaT, yabA, yabB, yazA,
                     yabC"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             39462..39791
                     /gene="darA"
                     /locus_tag="BSU_00290"
                     /old_locus_tag="BSU00290"
                     /experiment="publication(s) with functional evidences,
                     PMID:10913081, 25433025"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 10913081, 25433025;
                     Product type rc: receptor"
                     /codon_start=1
                     /transl_table=11
                     /product="signal transduction receptor, cyclic di-AMP
                     binding"
                     /protein_id="NP_387910.1"
                     /db_xref="EnsemblGenomes-Gn:BSU00290"
                     /db_xref="EnsemblGenomes-Tr:CAB11805"
                     /db_xref="InterPro:IPR010375"
                     /db_xref="InterPro:IPR011322"
                     /db_xref="InterPro:IPR015867"
                     /db_xref="PDB:4RLE"
                     /db_xref="SubtiList:BG10093"
                     /db_xref="UniProtKB/Swiss-Prot:P37538"
                     /translation="MKLIVAVVQDQDSNRLLKTLTDHNFRVTKLATTGGFLKSGNTTF
                     MIGVEDIRVNKALSLIKENGQKRDQMIAPVSPMGGNADSYVPYPVEVEVGGATVFVLP
                     VDEFHQF*"
                     /label="darA CDS"
     gene            39462..39791
                     /gene="darA"
                     /locus_tag="BSU_00290"
                     /old_locus_tag="BSU00290"
                     /label="darA gene"
     CDS             39804..40244
                     /gene="yaaR"
                     /locus_tag="BSU_00300"
                     /old_locus_tag="BSU00300"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms; PubMedId: 22333191, 22720735"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved hypothetical protein"
                     /protein_id="NP_387911.1"
                     /db_xref="EnsemblGenomes-Gn:BSU00300"
                     /db_xref="EnsemblGenomes-Tr:CAB11806"
                     /db_xref="InterPro:IPR005585"
                     /db_xref="InterPro:IPR024042"
                     /db_xref="SubtiList:BG10094"
                     /db_xref="UniProtKB/Swiss-Prot:P37539"
                     /translation="MKINKDIRTFIDNKQIPSVKTSEITASFKTSMENQSSKMKLDQL
                     TRLLSDIEAFGKRLTKSRNFKDLARFKGLVKRFVKEAVDSGLSHETSKSFDLYGNSRT
                     LGLVKEIDDKLIQLTEEMMDQEKPAIDLLERIGEIKGLLINLYT*"
                     /label="yaaR CDS"
     gene            39804..40244
                     /gene="yaaR"
                     /locus_tag="BSU_00300"
                     /old_locus_tag="BSU00300"
                     /label="yaaR gene"
     CDS             40256..41245
                     /gene="holB"
                     /locus_tag="BSU_00310"
                     /old_locus_tag="BSU00310"
                     /EC_number="2.7.7.7"
                     /function="16.9: Replicate"
                     /experiment="publication(s) with functional evidences,
                     PMID:8509334, 12060778, 12682299, 22333191, 23525462"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 8509334, 12060778,
                     12682299, 22333191, 23525462; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III clamp loader delta' subunit"
                     /protein_id="NP_387912.1"
                     /db_xref="EnsemblGenomes-Gn:BSU00310"
                     /db_xref="EnsemblGenomes-Tr:CAB11807"
                     /db_xref="GOA:P37540"
                     /db_xref="InterPro:IPR004622"
                     /db_xref="InterPro:IPR015199"
                     /db_xref="InterPro:IPR027417"
                     /db_xref="SubtiList:BG10095"
                     /db_xref="UniProtKB/Swiss-Prot:P37540"
                     /translation="MAISWKEMNELQPRVMKLLYNSIEKDRLSHAYLFEGKKGTGKLD
                     AALLLAKSFFCLEGGAEPCESCRNCKRIESGNHPDLHLVQPDGLSIKKAQIQALQEEF
                     SKTGLESHKKLYIISHADQMTANAANSLLKFLEEPNKDTMAVLITEQPQRLLDTIISR
                     CQTLPFQPLQPKAIEDRLIEQDVSPHMARLLANMTNNVAEAVELSRNDEFAESRAKVI
                     KLYEVLHQRKGHAFFFIQDQWMPFFKEKTHQEMGLDMLLLIYRDVLSIQIGNEDKLIY
                     QDLFQSIKQHALQSTQQSVTNQILAVLEAKKRLHSNVNVQGLMEHLVLMLQEG*"
                     /label="holB CDS"
     gene            40256..41245
                     /gene="holB"
                     /locus_tag="BSU_00310"
                     /old_locus_tag="BSU00310"
                     /label="holB gene"
     CDS             41248..42075
                     /gene="ricT"
                     /locus_tag="BSU_00320"
                     /old_locus_tag="BSU00320"
                     /function="16.3: Control"
                     /experiment="publication(s) with functional evidences,
                     PMID:12270811, 23490197, 26434553, 27501195, 28295778"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 12270811, 23490197,
                     26434553, 27501195, 28295778; Product type r: regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="subunit of a sporulation, competence and
                     biofilmformation regulatory complex of RNaseY (RicAFT
                     complex /FAD / two [4Fe-4S]2+)"
                     /protein_id="NP_387913.1"
                     /db_xref="EnsemblGenomes-Gn:BSU00320"
                     /db_xref="EnsemblGenomes-Tr:CAB11808"
                     /db_xref="GOA:P37541"
                     /db_xref="InterPro:IPR007557"
                     /db_xref="SubtiList:BG10096"
                     /db_xref="UniProtKB/Swiss-Prot:P37541"
                     /translation="MYNVIGVRFKKAGKIYYFDPNGFHIEHDSCVIVETVRGVEYGQV
                     VIANKQVDEHDVVLPLRKVIRVADDRDLLIVEENKQEALSAFDICQKKVIEHGLDMKL
                     VDVEFTFDRNKVIFYFTADGRVDFRELVKDLASIFKTRIELRQIGVRDEAKMLGGIGP
                     CGRMLCCSTFLGDFEPVSIKMAKDQNLSLNPTKISGLCGRLMCCLKYENDEYETAKEQ
                     LPDIGEMITTANGPAKVVGLNILERVLQVELINREKVIEYTWEELLEEGVVSAQTTD*
                     "
                     /label="ricT CDS"
     gene            41248..42075
                     /gene="ricT"
                     /locus_tag="BSU_00320"
                     /old_locus_tag="BSU00320"
                     /label="ricT gene"
     CDS             42090..42449
                     /gene="dnaH"
                     /locus_tag="BSU_00330"
                     /old_locus_tag="BSU00330"
                     /function="16.9: Replicate"
                     /function="16.3: Control"
                     /experiment="publication(s) with functional evidences,
                     PMID:15927750, 16461910, 19737352, 21895792, 23909787,
                     28166228"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 15927750, 16461910,
                     19737352, 21895792, 23909787, 28166228; Product type f :
                     factor"
                     /codon_start=1
                     /transl_table=11
                     /product="subunit of the DNA replication complex"
                     /protein_id="NP_387914.1"
                     /db_xref="EnsemblGenomes-Gn:BSU00330"
                     /db_xref="EnsemblGenomes-Tr:CAB11809"
                     /db_xref="GOA:P37542"
                     /db_xref="InterPro:IPR010377"
                     /db_xref="PDB:5DOL"
                     /db_xref="SubtiList:BG10097"
                     /db_xref="UniProtKB/Swiss-Prot:P37542"
                     /translation="MDKKELFDTVINLEEQIGSLYRQLGDLKQHIGEMIEENHHLQLE
                     NKHLRKRLDDTTQQIEKFKADKKESKTQKTEQTDIGEGYDNLARLYQEGFHICNVHYG
                     SVRKEDCLFCLSFLNKK*"
                     /label="dnaH CDS"
     gene            42090..42449
                     /gene="dnaH"
                     /locus_tag="BSU_00330"
                     /old_locus_tag="BSU00330"
                     /label="dnaH gene"
     CDS             42508..43251
                     /gene="trmNF"
                     /locus_tag="BSU_00340"
                     /old_locus_tag="BSU00340"
                     /EC_number="2.1.1.223"
                     /function="10.3: tRNA and rRNA base modification"
                     /function="16.3: Control"
                     /function="16.2: Construct biomass (Anabolism)"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 2a: Function from experimental evidences
                     in other organisms; PubMedId: 22905870, 24809820; Product
                     type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA1(Val) (adenine(37)-N6)-methyltransferase"
                     /protein_id="NP_387915.1"
                     /db_xref="EnsemblGenomes-Gn:BSU00340"
                     /db_xref="EnsemblGenomes-Tr:CAB11810"
                     /db_xref="GOA:P37543"
                     /db_xref="InterPro:IPR007848"
                     /db_xref="InterPro:IPR029063"
                     /db_xref="SubtiList:BG10098"
                     /db_xref="UniProtKB/Swiss-Prot:P37543"
                     /translation="MVSLHDDERLDYLLAEDMKIIQSPTVFAFSLDAVLLSKFAYVPI
                     QKGKIVDLCTGNGIVPLLLSTRSKADILGVEIQERLHDMAVRSVEYNKLDDQIQIIHD
                     DLKNMPEKLGHNRYDVVTCNPPYFKTPKQTEQNMNEHLRIARHEIHCTLEDVISVSSK
                     LLKQGGKAALVHRPGRLLEIFELMKAYQIEPKRVQFVYPKQGKEANTILVEGIKGGRP
                     DLKILPPLFVYDEQNEYTKEIRTILYGDK*"
                     /label="trmNF CDS"
     gene            42508..43251
                     /gene="trmNF"
                     /locus_tag="BSU_00340"
                     /old_locus_tag="BSU00340"
                     /label="trmNF gene"
     CDS             43238..43537
                     /gene="yazA"
                     /locus_tag="BSU_00350"
                     /old_locus_tag="BSU00350"
                     /function="16.6: Maintain"
                     /function="16.11: Scavenge (Catabolism)"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 11483577; Product type
                     e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative UvrC-Intron-type (URI) endonuclease"
                     /protein_id="NP_387916.1"
                     /db_xref="EnsemblGenomes-Gn:BSU00350"
                     /db_xref="EnsemblGenomes-Tr:CAB11811"
                     /db_xref="InterPro:IPR000305"
                     /db_xref="InterPro:IPR035901"
                     /db_xref="SubtiList:BG12700"
                     /db_xref="UniProtKB/Swiss-Prot:O31414"
                     /translation="METNNHFFYVVKCKDNSWYAGYTNDLHKRVKTHNDGKGAKYTKV
                     RRPVELIFAESFSTKREAMQAEYYFKKLTRKKKELYIEEKRNSKEAVYVKAPNEL*"
                     /label="yazA CDS"
     gene            43238..43537
                     /gene="yazA"
                     /locus_tag="BSU_00350"
                     /old_locus_tag="BSU00350"
                     /label="yazA gene"
     CDS             43512..44390
                     /gene="rsmI"
                     /locus_tag="BSU_00360"
                     /old_locus_tag="BSU00360"
                     /EC_number="2.1.1.198"
                     /function="16.8: Protect"
                     /function="16.3: Control"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 2a: Function from experimental evidences
                     in other organisms; PubMedId: 16014871, 19965768,
                     25893373; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA 2'-O-ribose C1402 methyltransferase"
                     /protein_id="NP_387917.1"
                     /db_xref="EnsemblGenomes-Gn:BSU00360"
                     /db_xref="EnsemblGenomes-Tr:CAB11812"
                     /db_xref="GOA:P37544"
                     /db_xref="InterPro:IPR000878"
                     /db_xref="InterPro:IPR008189"
                     /db_xref="InterPro:IPR014776"
                     /db_xref="InterPro:IPR014777"
                     /db_xref="InterPro:IPR018063"
                     /db_xref="InterPro:IPR035996"
                     /db_xref="SubtiList:BG10099"
                     /db_xref="UniProtKB/Swiss-Prot:P37544"
                     /translation="MLRRQMSFNGKSDMGILYLVPTPIGNLEDMTFRAIDTLKSVDAI
                     AAEDTRQTKKLCHVYEIETPLVSYHEHNKESSGHKIIEWLKSGKNIALVSDAGLPTIS
                     DPGAEIVKDFTDIGGYVVPLPGANAALTALIASGIVPQPFFFYGFLNRQKKEKKKELE
                     ALKKRQETIIFYEAPHRLKETLSAMAEILGDREIAVTRELTKKYEEFIRGTISEVIGW
                     ANEDQIRGEFCLVVEGSNNEEVDEEEQWWETLTAKEHVEHYISKGATSKEAIKKAAVD
                     RNVPKREVYDAYHIKQ*"
                     /label="rsmI CDS"
     gene            43512..44390
                     /gene="rsmI"
                     /locus_tag="BSU_00360"
                     /old_locus_tag="BSU00360"
                     /label="rsmI gene"
     downshifts      44363
                     /Source="Nicolas_upshifts"
                     /id="D13"
                     /incds=0
                     /nref=23
                     /ntot=177
                     /MaxReadThrough="3.33195"
                     /MaxDrop="3.72723"
                     /score="5.97354542"
                     /energy="-10.2"
                     /TU="U29,U31"
                     /idTUdmin="U29"
                     /TUdmin="-23"
                     /isTUend="FALSE"
                     /label="downshifts"
     CDS             complement(44439..44729)
                     /gene="abrB"
                     /locus_tag="BSU_00370"
                     /old_locus_tag="BSU00370"
                     /function="16.3: Control"
                     /experiment="publication(s) with functional evidences,
                     PMID:10754235, 10809710, 11101881, 11101897, 16159768,
                     16223496, 16702211, 25308864, 25381239, 18676675,
                     22183144, 23196984, 24832089, 24847778, 25288929"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 10754235, 10809710,
                     11101881, 11101897, 16159768, 16223496, 16702211,
                     25308864, 25381239, 18676675, 22183144, 23196984,
                     24832089, 24847778, 25288929; Product type r: regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator for transition state
                     genes (AbrB-SurF)"
                     /protein_id="NP_387918.1"
                     /db_xref="EnsemblGenomes-Gn:BSU00370"
                     /db_xref="EnsemblGenomes-Tr:CAB11813"
                     /db_xref="GOA:P08874"
                     /db_xref="InterPro:IPR007159"
                     /db_xref="PDB:1YFB"
                     /db_xref="PDB:1YSF"
                     /db_xref="PDB:1Z0R"
                     /db_xref="PDB:2K1N"
                     /db_xref="PDB:2MJG"
                     /db_xref="PDB:2RO4"
                     /db_xref="SubtiList:BG10100"
                     /db_xref="UniProtKB/Swiss-Prot:P08874"
                     /translation="MFMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEK
                     IILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEGAEQIISEIQNQLQNLK*"
                     /label="abrB CDS"
     gene            complement(44439..44729)
                     /gene="abrB"
                     /locus_tag="BSU_00370"
                     /old_locus_tag="BSU00370"
                     /label="abrB gene"
     downshifts      complement(44441)
                     /Source="Nicolas_upshifts"
                     /id="D14"
                     /incds=0
                     /nref=216
                     /ntot=263
                     /MaxReadThrough="2.17237"
                     /MaxDrop="7.75729"
                     /score="20.9582436"
                     /energy="-10.2"
                     /TU="U32"
                     /idTUdmin="U32"
                     /TUdmin="-23"
                     /isTUend="FALSE"
                     /label="downshifts"
     downshifts      44760
                     /Source="Nicolas_upshifts"
                     /id="D15"
                     /incds=0
                     /nref=1
                     /ntot=15
                     /MaxReadThrough="2.53543"
                     /MaxDrop="4.31699"
                     /score="13.7153159"
                     /energy="-14.4"
                     /TU="NA"
                     /idTUdmin="U29"
                     /TUdmin=374
                     /isTUend="FALSE"
                     /label="downshifts"
     promotor_-10    complement(44796..44815)
                     /Source="Nicolas_upshift_promotors"
                     /id="U32"
                     /multdbtbs="SigA,SigA"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.608391608391608"
                     /psig=1
                     /xcortree=2122
                     /SigmaFactorBS="tataagaactaattcttacaatcaatagtaaacaaaaTGATT
                     GACgattattggaaacCTTGTTATGCTATGAAGGTAaggattttgtcgaataatgacg
                     a"
                     /listShort="abrB"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(44813)
                     /Source="Nicolas_upshifts"
                     /id="U32"
                     /multdbtbs="SigA,SigA"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.608391608391608"
                     /psig=1
                     /xcortree=2122
                     /SigmaFactorBS="tataagaactaattcttacaatcaatagtaaacaaaaTGATT
                     GACgattattggaaacCTTGTTATGCTATGAAGGTAaggattttgtcgaataatgacg
                     a"
                     /listShort="abrB"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     S_feature       complement(44815..44990)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_45224_45399_c"
                     /HighExp="C30, H2O2, G180, Etha, S0, GM 25, Gly, G135, MG
                     25, MG-0.2"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.993"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S23"
     promotor_-35    complement(44829..44836)
                     /Source="Nicolas_upshift_promotors"
                     /id="U32"
                     /multdbtbs="SigA,SigA"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.608391608391608"
                     /psig=1
                     /xcortree=2122
                     /SigmaFactorBS="tataagaactaattcttacaatcaatagtaaacaaaaTGATT
                     GACgattattggaaacCTTGTTATGCTATGAAGGTAaggattttgtcgaataatgacg
                     a"
                     /listShort="abrB"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    complement(44986..45005)
                     /Source="Nicolas_upshift_promotors"
                     /id="U33"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.603396603396603"
                     /psig="0.993006993006993"
                     /xcortree=2123
                     /SigmaFactorBS="aaatctttaatgaaaataaaaaaaGTCTGTTCgtgtcgaatt
                     ttgTCGTATATAATCAAATGAAAtaaaaaactttggttcgaaagtcttgatttaaaag
                     g"
                     /listShort="S23"
                     /listLong="abrB"
                     /label="promotor_-10"
     upshifts        complement(44990)
                     /Source="Nicolas_upshifts"
                     /id="U33"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.603396603396603"
                     /psig="0.993006993006993"
                     /xcortree=2123
                     /SigmaFactorBS="aaatctttaatgaaaataaaaaaaGTCTGTTCgtgtcgaatt
                     ttgTCGTATATAATCAAATGAAAtaaaaaactttggttcgaaagtcttgatttaaaag
                     g"
                     /listShort="S23"
                     /listLong="abrB"
                     /label="upshifts"
     promotor_-35    complement(45019..45026)
                     /Source="Nicolas_upshift_promotors"
                     /id="U33"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.603396603396603"
                     /psig="0.993006993006993"
                     /xcortree=2123
                     /SigmaFactorBS="aaatctttaatgaaaataaaaaaaGTCTGTTCgtgtcgaatt
                     ttgTCGTATATAATCAAATGAAAtaaaaaactttggttcgaaagtcttgatttaaaag
                     g"
                     /listShort="S23"
                     /listLong="abrB"
                     /label="promotor_-35"
     promotor_-35    45090..45094
                     /Source="Nicolas_upshift_promotors"
                     /id="U34"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.803196803196803"
                     /psig="0.999000999001"
                     /xcortree=2569
                     /SigmaFactorBS="ttttaattattctttttcagggcgtatgtatatatTCTTGat
                     cttaaaggctaaGATGGTATCATAGATAAAGGataaatataaataatattcatatatg
                     a"
                     /listShort="S24, metS, yabD, S26, yabE"
                     /listLong="S27, rnmV, ksgA"
                     /label="promotor_-35"
     promotor_-10    45109..45128
                     /Source="Nicolas_upshift_promotors"
                     /id="U34"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.803196803196803"
                     /psig="0.999000999001"
                     /xcortree=2569
                     /SigmaFactorBS="ttttaattattctttttcagggcgtatgtatatatTCTTGat
                     cttaaaggctaaGATGGTATCATAGATAAAGGataaatataaataatattcatatatg
                     a"
                     /listShort="S24, metS, yabD, S26, yabE"
                     /listLong="S27, rnmV, ksgA"
                     /label="promotor_-10"
     S_feature       45115..45223
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_45524_45632"
                     /HighExp="LBGtran, Heat, dia5, dia15, LBGexp, Lbexp, dia0,
                     H2O2, Diami, BMM"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.999"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S24"
     upshifts        45115
                     /Source="Nicolas_upshifts"
                     /id="U34"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.803196803196803"
                     /psig="0.999000999001"
                     /xcortree=2569
                     /SigmaFactorBS="ttttaattattctttttcagggcgtatgtatatatTCTTGat
                     cttaaaggctaaGATGGTATCATAGATAAAGGataaatataaataatattcatatatg
                     a"
                     /listShort="S24, metS, yabD, S26, yabE"
                     /listLong="S27, rnmV, ksgA"
                     /label="upshifts"
     CDS             45224..47218
                     /gene="metS"
                     /locus_tag="BSU_00380"
                     /old_locus_tag="BSU00380"
                     /EC_number="6.1.1.10"
                     /function="16.2: Construct biomass (Anabolism)"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 1c: Function from experimental evidences
                     in the studied genus; PubMedId: 11233169, 12682299,
                     12792655; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="methionyl-tRNA synthetase"
                     /protein_id="NP_387919.1"
                     /db_xref="EnsemblGenomes-Gn:BSU00380"
                     /db_xref="EnsemblGenomes-Tr:CAB11814"
                     /db_xref="GOA:P37465"
                     /db_xref="InterPro:IPR001412"
                     /db_xref="InterPro:IPR002547"
                     /db_xref="InterPro:IPR004495"
                     /db_xref="InterPro:IPR009080"
                     /db_xref="InterPro:IPR012340"
                     /db_xref="InterPro:IPR013155"
                     /db_xref="InterPro:IPR014729"
                     /db_xref="InterPro:IPR014758"
                     /db_xref="InterPro:IPR015413"
                     /db_xref="InterPro:IPR023457"
                     /db_xref="InterPro:IPR033911"
                     /db_xref="SubtiList:BG10101"
                     /db_xref="UniProtKB/Swiss-Prot:P37465"
                     /translation="MPQENNTFYITTPIYYPSGKLHIGHAYTTVAGDAMARYKRLKGF
                     DVRYLTGTDEHGQKIQQKAEQENITPQEYVDRAAADIQKLWKQLEISNDDFIRTTEKR
                     HKVVIEKVFQKLLDNGDIYLDEYEGWYSIPDETFYTETQLVDIERNEKGEVIGGKSPD
                     SGHPVELIKEESYFFRMGKYADRLLKYYEENPTFIQPESRKNEMINNFIKPGLEDLAV
                     SRTTFDWGVKVPENPKHVVYVWIDALFNYLTALGYDTENDELYQKYWPADVHLVGKEI
                     VRFHTIYWPIMLMALDLPLPKQVFAHGWLLMKDGKMSKSKGNVVDPVTLIERYGLDEL
                     RYYLLREVPFGSDGVFTPEGFVERINYDLANDLGNLLNRTVAMINKYFDGQIGSYKGA
                     VTEFDHTLTSVAEETVKAYEKAMENMEFSVALSTLWQLISRTNKYIDETAPWVLAKDP
                     AKEEELRSVMYHLAESLRISAVLLQPFLTKTPEKMFEQLGITDESLKAWDSITAFGQL
                     KDTKVQKGEPLFPRLEAEEEIAYIKGKMQGSAPAKEETKEEEPQEVDRLPEITIDQFM
                     DVELRVAEVIEAEPVKKADRLLKLQLDLGFEKRQVVSGIAKHYTPEELVGKKLVCVTN
                     LKPVKLRGELSQGMILAGEADGVLKVVSIDQSLPKGTRIK*"
                     /label="metS CDS"
     gene            45224..47218
                     /gene="metS"
                     /locus_tag="BSU_00380"
                     /old_locus_tag="BSU00380"
                     /label="metS gene"
     promotor_-10    complement(45972..45991)
                     /Source="Nicolas_upshift_promotors"
                     /id="U35"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.938061938061938"
                     /psig=1
                     /xcortree=1824
                     /SigmaFactorBS="cgactaaatgaacatcggcaggccaatatTTTTGataaagct
                     catcattTTCTGTATCATAACCGAGTGccgttaaatagttaaatagtgcgtcaatcca
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(45980)
                     /Source="Nicolas_upshifts"
                     /id="U35"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.938061938061938"
                     /psig=1
                     /xcortree=1824
                     /SigmaFactorBS="cgactaaatgaacatcggcaggccaatatTTTTGataaagct
                     catcattTTCTGTATCATAACCGAGTGccgttaaatagttaaatagtgcgtcaatcca
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(46007..46011)
                     /Source="Nicolas_upshift_promotors"
                     /id="U35"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.938061938061938"
                     /psig=1
                     /xcortree=1824
                     /SigmaFactorBS="cgactaaatgaacatcggcaggccaatatTTTTGataaagct
                     catcattTTCTGTATCATAACCGAGTGccgttaaatagttaaatagtgcgtcaatcca
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     downshifts      47202
                     /Source="Nicolas_upshifts"
                     /id="D16"
                     /incds=0
                     /nref=18
                     /ntot=206
                     /MaxReadThrough="4.8491"
                     /MaxDrop="2.9167"
                     /score="13.7153159"
                     /energy="-14.4"
                     /TU="U34"
                     /idTUdmin="U34"
                     /TUdmin="-2288"
                     /isTUend="FALSE"
                     /label="downshifts"
     S_feature       complement(47264..49610)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_47673_50019_c"
                     /HighExp="T0.30H, T1.0H, T1.30H, Salt, C30, T2.0H,
                     T-0.40H, T0.0H, T2.30H, T-1.10H"
                     /AntisenseName="yabE"
                     /AntisenseCor="-0.28154713646185298"
                     /AntisenseRegPval="-5.6"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigWXY"
                     /TUshortPSig=1
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S25"
     CDS             47297..48064
                     /gene="dayD"
                     /locus_tag="BSU_00390"
                     /old_locus_tag="BSU00390"
                     /EC_number="3.1.-.-"
                     /function="16.11: Scavenge (Catabolism)"
                     /function="16.6: Maintain"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 2a: Function from experimental evidences
                     in other organisms; PubMedId: 10747959, 16014871,
                     16461678, 19332551; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="D-amino acyl-tRNA deacylase"
                     /protein_id="NP_387920.1"
                     /db_xref="EnsemblGenomes-Gn:BSU00390"
                     /db_xref="EnsemblGenomes-Tr:CAB11815"
                     /db_xref="GOA:P37545"
                     /db_xref="InterPro:IPR001130"
                     /db_xref="InterPro:IPR015991"
                     /db_xref="InterPro:IPR018228"
                     /db_xref="InterPro:IPR032466"
                     /db_xref="SubtiList:BG10102"
                     /db_xref="UniProtKB/Swiss-Prot:P37545"
                     /translation="MLFDTHAHLNAEQYDTDLEEVIERAKAEKVERIVVVGFDRPTIT
                     RAMEMIEEYDFIYAAIGWHPVDAIDMTEEDLAWIKELSAHEKVVAIGEMGLDYHWDKS
                     PKDIQKEVFRNQIALAKEVNLPIIIHNRDATEDVVTILKEEGAEAVGGIMHCFTGSAE
                     VARECMKMNFYLSFGGPVTFKNAKKPKEVVKEIPNDRLLIETDCPFLTPHPFRGKRNE
                     PSYVKYVAEQIAELKEMTFEEIASITTENAKRLFRIN*"
                     /label="dayD CDS"
     gene            47297..48064
                     /gene="dayD"
                     /locus_tag="BSU_00390"
                     /old_locus_tag="BSU00390"
                     /label="dayD gene"
     S_feature       48065..48145
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_48474_48554"
                     /HighExp="Heat, C30, LBGtran, LBGstat, C90, Etha, M40t45,
                     LPhT, MG 15, Gly"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.999"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S26"
     promotor_-35    48122..48127
                     /Source="Nicolas_upshift_promotors"
                     /id="U36"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.943056943056943"
                     /psig="0.943056943056943"
                     /xcortree=438
                     /SigmaFactorBS="taagagcttgtcccttacagcgtttttctataaaaGTTCTAc
                     atgctttcttctccTCATAGGATAGGTTTGTCGacaagtctttcttccgtttctcagt
                     g"
                     /listShort="yabE, S27, rnmV, ksgA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    48143..48161
                     /Source="Nicolas_upshift_promotors"
                     /id="U36"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.943056943056943"
                     /psig="0.943056943056943"
                     /xcortree=438
                     /SigmaFactorBS="taagagcttgtcccttacagcgtttttctataaaaGTTCTAc
                     atgctttcttctccTCATAGGATAGGTTTGTCGacaagtctttcttccgtttctcagt
                     g"
                     /listShort="yabE, S27, rnmV, ksgA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        48147
                     /Source="Nicolas_upshifts"
                     /id="U36"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.943056943056943"
                     /psig="0.943056943056943"
                     /xcortree=438
                     /SigmaFactorBS="taagagcttgtcccttacagcgtttttctataaaaGTTCTAc
                     atgctttcttctccTCATAGGATAGGTTTGTCGacaagtctttcttccgtttctcagt
                     g"
                     /listShort="yabE, S27, rnmV, ksgA"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    48172..48175
                     /Source="Nicolas_upshift_promotors"
                     /id="U37"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.705294705294705"
                     /psig="0.843156843156843"
                     /xcortree=440
                     /SigmaFactorBS="aggataggtttgtcgacaagtctttCTTCcgtttctcagtgt
                     aTTTCAGGATAATGAAGAGGAcactgagcttttgggagaaagagaagggagggttgac
                     a"
                     /listShort="yabE, S27"
                     /listLong="rnmV, ksgA"
                     /label="promotor_-35"
     promotor_-10    48190..48209
                     /Source="Nicolas_upshift_promotors"
                     /id="U37"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.705294705294705"
                     /psig="0.843156843156843"
                     /xcortree=440
                     /SigmaFactorBS="aggataggtttgtcgacaagtctttCTTCcgtttctcagtgt
                     aTTTCAGGATAATGAAGAGGAcactgagcttttgggagaaagagaagggagggttgac
                     a"
                     /listShort="yabE, S27"
                     /listLong="rnmV, ksgA"
                     /label="promotor_-10"
     upshifts        48207
                     /Source="Nicolas_upshifts"
                     /id="U37"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.705294705294705"
                     /psig="0.843156843156843"
                     /xcortree=440
                     /SigmaFactorBS="aggataggtttgtcgacaagtctttCTTCcgtttctcagtgt
                     aTTTCAGGATAATGAAGAGGAcactgagcttttgggagaaagagaagggagggttgac
                     a"
                     /listShort="yabE, S27"
                     /listLong="rnmV, ksgA"
                     /label="upshifts"
     CDS             48220..49533
                     /gene="yabE"
                     /locus_tag="BSU_00400"
                     /old_locus_tag="BSU00400"
                     /function="16.13: Shape"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 15774001, 19047346;
                     Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative cell wall shaping enzyme"
                     /protein_id="NP_387921.1"
                     /db_xref="EnsemblGenomes-Gn:BSU00400"
                     /db_xref="EnsemblGenomes-Tr:CAB11816"
                     /db_xref="GOA:P37546"
                     /db_xref="InterPro:IPR007137"
                     /db_xref="InterPro:IPR010611"
                     /db_xref="InterPro:IPR011098"
                     /db_xref="InterPro:IPR036908"
                     /db_xref="SubtiList:BG10103"
                     /db_xref="UniProtKB/Swiss-Prot:P37546"
                     /translation="MGEREGRVDSLLDTLYNLSEEKEAFFITQKMKKLFSVKLSKSKV
                     ILVAACLLLAGSGTAYAAHELTKQSVSVSINGKKKHIRTHANTVGDLLETLDIKTRDE
                     DKITPAKQTKITADMDVVYEAAKPVKLTINGEEKTLWSTAKTVGALLDEQDVDVKEQD
                     QIDPAIDTDISKDMKINIEPAFQVTVNDAGKQKKIWTTSTTVADFLKQQKMNIKDEDK
                     IKPALDAKLTKGKADITITRIEKVTDVVEEKIAFDVKKQEDASLEKGKEKVVQKGKEG
                     KLKKHFEVVKENGKEVSRELVKEETAEQSKDKVIAVGTKQSSPKFETVSASGDSKTVV
                     SRSNESTGKVMTVSSTAYTASCSGCSGHTATGVNLKNNPNAKVIAVDPNVIPLGSKVH
                     VEGYGYAIAADTGSAIKGNKIDVFFPEKSSAYRWGNKTVKIKILN*"
                     /label="yabE CDS"
     gene            48220..49533
                     /gene="yabE"
                     /locus_tag="BSU_00400"
                     /old_locus_tag="BSU00400"
                     /label="yabE gene"
     promotor_-35    48240..48247
                     /Source="Nicolas_upshift_promotors"
                     /id="U38"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.926073926073926"
                     /psig=1
                     /xcortree=2420
                     /SigmaFactorBS="taatgaagaggacactgagcttttgggagaaagagaagggag
                     GGTTGACAgccttttagatactCTATATAATCTCTCCGAGGAgaaggaggcgtttttc
                     a"
                     /listShort="yabE, S27, rnmV, ksgA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     upshifts        48258
                     /Source="Nicolas_upshifts"
                     /id="U38"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.926073926073926"
                     /psig=1
                     /xcortree=2420
                     /SigmaFactorBS="taatgaagaggacactgagcttttgggagaaagagaagggag
                     GGTTGACAgccttttagatactCTATATAATCTCTCCGAGGAgaaggaggcgtttttc
                     a"
                     /listShort="yabE, S27, rnmV, ksgA"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-10    48262..48281
                     /Source="Nicolas_upshift_promotors"
                     /id="U38"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.926073926073926"
                     /psig=1
                     /xcortree=2420
                     /SigmaFactorBS="taatgaagaggacactgagcttttgggagaaagagaagggag
                     GGTTGACAgccttttagatactCTATATAATCTCTCCGAGGAgaaggaggcgtttttc
                     a"
                     /listShort="yabE, S27, rnmV, ksgA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     downshifts      49494
                     /Source="Nicolas_upshifts"
                     /id="D17"
                     /incds=0
                     /nref=87
                     /ntot=220
                     /MaxReadThrough="5.02755"
                     /MaxDrop="4.87493"
                     /score="27.529638"
                     /energy="-11.3"
                     /TU="U36,U37,U38"
                     /idTUdmin="U34"
                     /TUdmin=4
                     /isTUend="TRUE"
                     /label="downshifts"
     promotor_-35    49556..49560
                     /Source="Nicolas_upshift_promotors"
                     /id="U39"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.928071928071928"
                     /psig=1
                     /xcortree=2584
                     /SigmaFactorBS="taaaatcttaaattagtatatacttatgtattcagaggGTTT
                     TgcgccctctgtttttTTCGTTATAATAGACAAAGTgcattttctgcttattagacgc
                     t"
                     /listShort="S27, rnmV, ksgA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    49576..49595
                     /Source="Nicolas_upshift_promotors"
                     /id="U39"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.928071928071928"
                     /psig=1
                     /xcortree=2584
                     /SigmaFactorBS="taaaatcttaaattagtatatacttatgtattcagaggGTTT
                     TgcgccctctgtttttTTCGTTATAATAGACAAAGTgcattttctgcttattagacgc
                     t"
                     /listShort="S27, rnmV, ksgA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     S_feature       49578..49677
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_49987_50086"
                     /HighExp="LoTm, H2O2, G180, G135, G150, Paraq, Oxctl, C30,
                     dia15, BMM"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA, SigA, SigA, SigEF"
                     /TUshortPSig="1, 1, 0.843, 0.943"
                     /TUlongSig="SigA"
                     /TUlongPSig="0.999"
                     /label="S27"
     upshifts        49578
                     /Source="Nicolas_upshifts"
                     /id="U39"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.928071928071928"
                     /psig=1
                     /xcortree=2584
                     /SigmaFactorBS="taaaatcttaaattagtatatacttatgtattcagaggGTTT
                     TgcgccctctgtttttTTCGTTATAATAGACAAAGTgcattttctgcttattagacgc
                     t"
                     /listShort="S27, rnmV, ksgA"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-10    complement(49602..49617)
                     /Source="Nicolas_upshift_promotors"
                     /id="U40"
                     /multdbtbs="-"
                     /comp="M9"
                     /sig="SigWXY"
                     /pcomp=1
                     /psig=1
                     /xcortree=2365
                     /SigmaFactorBS="ttatttcctccaagacaaaataaaaacttttgtatattcaTG
                     AAACTTTTtcttatatcgaGCGTCTAATAAGCAGAaaatgcactttgtctattataac
                     g"
                     /listShort="S25"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(49618)
                     /Source="Nicolas_upshifts"
                     /id="U40"
                     /multdbtbs="-"
                     /comp="M9"
                     /sig="SigWXY"
                     /pcomp=1
                     /psig=1
                     /xcortree=2365
                     /SigmaFactorBS="ttatttcctccaagacaaaataaaaacttttgtatattcaTG
                     AAACTTTTtcttatatcgaGCGTCTAATAAGCAGAaaatgcactttgtctattataac
                     g"
                     /listShort="S25"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(49629..49638)
                     /Source="Nicolas_upshift_promotors"
                     /id="U40"
                     /multdbtbs="-"
                     /comp="M9"
                     /sig="SigWXY"
                     /pcomp=1
                     /psig=1
                     /xcortree=2365
                     /SigmaFactorBS="ttatttcctccaagacaaaataaaaacttttgtatattcaTG
                     AAACTTTTtcttatatcgaGCGTCTAATAAGCAGAaaatgcactttgtctattataac
                     g"
                     /listShort="S25"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     misc_feature    49674..49690
                     /Source="Nicolas_upshift_promotors"
                     /id="U41"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="Sig-"
                     /pcomp="0.48051948051948"
                     /psig="0.48051948051948"
                     /xcortree=100
                     /SigmaFactorBS="aaaaagtttcatgaatatacaaaagtttttattttgtcttgg
                     aggaAATAATGAAAATTAAAGagatcattgtggtcgaggggcgtgacgatacggcccg
                     c"
                     /listShort="rnmV, ksgA"
                     /GFF_Attribute="listLong"
                     /label="promotor_single_box"
                     /note="Geneious type: promotor_single_box"
     CDS             49678..50238
                     /gene="rnmV"
                     /locus_tag="BSU_00410"
                     /old_locus_tag="BSU00410"
                     /EC_number="3.1.26.8"
                     /function="16.6: Maintain"
                     /experiment="publication(s) with functional evidences,
                     PMID:11233981, 11976317, 12794188, 16077031"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 11233981, 11976317,
                     12794188, 16077031; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease M5"
                     /protein_id="NP_387922.1"
                     /db_xref="EnsemblGenomes-Gn:BSU00410"
                     /db_xref="EnsemblGenomes-Tr:CAB11817"
                     /db_xref="GOA:P37547"
                     /db_xref="InterPro:IPR004466"
                     /db_xref="InterPro:IPR006171"
                     /db_xref="InterPro:IPR025156"
                     /db_xref="InterPro:IPR034141"
                     /db_xref="SubtiList:BG10104"
                     /db_xref="UniProtKB/Swiss-Prot:P37547"
                     /translation="MKIKEIIVVEGRDDTARIKLAVDADTIETNGSAIDDHVIDQIRL
                     AQKTRGVIILTDPDFPGEKIRKTISEAVPGCKHAFLPKHLAKPKNKRGIGVEHASVES
                     IRACLENVHEEMEAQPSDISAEDLIHAGLIGGPAAKCRRERLGDLLKIGYTNGKQLQK
                     RLQMFQIKKSDFMSALDTVMREEQNE*"
                     /label="rnmV CDS"
     gene            49678..50238
                     /gene="rnmV"
                     /locus_tag="BSU_00410"
                     /old_locus_tag="BSU00410"
                     /label="rnmV gene"
     upshifts        49688
                     /Source="Nicolas_upshifts"
                     /id="U41"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="Sig-"
                     /pcomp="0.48051948051948"
                     /psig="0.48051948051948"
                     /xcortree=100
                     /SigmaFactorBS="aaaaagtttcatgaatatacaaaagtttttattttgtcttgg
                     aggaAATAATGAAAATTAAAGagatcattgtggtcgaggggcgtgacgatacggcccg
                     c"
                     /listShort="rnmV, ksgA"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             50231..51109
                     /gene="rsmA"
                     /locus_tag="BSU_00420"
                     /old_locus_tag="BSU00420"
                     /EC_number="2.1.1.-"
                     /function="16.6: Maintain"
                     /function="16.8: Protect"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 1c: Function from experimental evidences
                     in the studied genus; PubMedId: 99430, 6801425, 11327780,
                     1690648, 22391551; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="dimethyladenosine 16S ribosomal RNA transferase"
                     /protein_id="NP_387923.1"
                     /db_xref="EnsemblGenomes-Gn:BSU00420"
                     /db_xref="EnsemblGenomes-Tr:CAB11818"
                     /db_xref="GOA:P37468"
                     /db_xref="InterPro:IPR001737"
                     /db_xref="InterPro:IPR011530"
                     /db_xref="InterPro:IPR020596"
                     /db_xref="InterPro:IPR020598"
                     /db_xref="InterPro:IPR023165"
                     /db_xref="InterPro:IPR029063"
                     /db_xref="SubtiList:BG10105"
                     /db_xref="UniProtKB/Swiss-Prot:P37468"
                     /translation="MNKDIATPIRTKEILKKYGFSFKKSLGQNFLIDTNILNRIVDHA
                     EVTEKTGVIEIGPGIGALTEQLAKRAKKVVAFEIDQRLLPILKDTLSPYENVTVIHQD
                     VLKADVKSVIEEQFQDCDEIMVVANLPYYVTTPIIMKLLEEHLPLKGIVVMLQKEVAE
                     RMAADPSSKEYGSLSIAVQFYTEAKTVMIVPKTVFVPQPNVDSAVIRLILRDGPAVDV
                     ENESFFFQLIKASFAQRRKTLLNNLVNNLPEGKAQKSTIEQVLEETNIDGKRRGESLS
                     IEEFAALSNGLYKALF*"
                     /label="rsmA CDS"
     gene            50231..51109
                     /gene="rsmA"
                     /locus_tag="BSU_00420"
                     /old_locus_tag="BSU00420"
                     /label="rsmA gene"
     downshifts      51074
                     /Source="Nicolas_upshifts"
                     /id="D18"
                     /incds=0
                     /nref=152
                     /ntot=229
                     /MaxReadThrough="3.0815"
                     /MaxDrop="4.58632"
                     /score="20.4155562"
                     /energy="-9.4"
                     /TU="NA"
                     /idTUdmin="U36"
                     /TUdmin=0
                     /isTUend="TRUE"
                     /label="downshifts"
     promotor_-35    51124..51133
                     /Source="Nicolas_upshift_promotors"
                     /id="U42"
                     /multdbtbs="SigK"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp=1
                     /psig=1
                     /xcortree=1303
                     /SigmaFactorBS="ttgtataaagcccttttctaaaagggctttttgttTTGCGCA
                     CCAcatggactgccgcTACATAGGCTAGAGAAGGACctttcattcaatgataagaaaa
                     a"
                     /listShort="S28, yabG"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    51147..51166
                     /Source="Nicolas_upshift_promotors"
                     /id="U42"
                     /multdbtbs="SigK"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp=1
                     /psig=1
                     /xcortree=1303
                     /SigmaFactorBS="ttgtataaagcccttttctaaaagggctttttgttTTGCGCA
                     CCAcatggactgccgcTACATAGGCTAGAGAAGGACctttcattcaatgataagaaaa
                     a"
                     /listShort="S28, yabG"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     S_feature       51149..51270
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_51558_51679"
                     /HighExp="S7, S6, S8, BT, S5, B36, G/S, Pyr, B60, Etha"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigK"
                     /TUshortPSig=1
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S28"
     upshifts        51149
                     /Source="Nicolas_upshifts"
                     /id="U42"
                     /multdbtbs="SigK"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp=1
                     /psig=1
                     /xcortree=1303
                     /SigmaFactorBS="ttgtataaagcccttttctaaaagggctttttgttTTGCGCA
                     CCAcatggactgccgcTACATAGGCTAGAGAAGGACctttcattcaatgataagaaaa
                     a"
                     /listShort="S28, yabG"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             51271..52143
                     /gene="prtG"
                     /locus_tag="BSU_00430"
                     /old_locus_tag="BSU00430"
                     /function="16.13: Shape"
                     /function="16.5: Explore"
                     /experiment="publication(s) with functional evidences,
                     PMID:10714992, 11040425, 16751597, 19060142, 19833771"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 10714992, 11040425,
                     16751597, 19060142, 19833771; Product type cp: cell
                     process"
                     /codon_start=1
                     /transl_table=11
                     /product="sporulation-specific protease"
                     /protein_id="NP_387924.1"
                     /db_xref="EnsemblGenomes-Gn:BSU00430"
                     /db_xref="EnsemblGenomes-Tr:CAB11819"
                     /db_xref="GOA:P37548"
                     /db_xref="InterPro:IPR008764"
                     /db_xref="SubtiList:BG10106"
                     /db_xref="UniProtKB/Swiss-Prot:P37548"
                     /translation="MQFQIGDMVARKSYQMDVLFRIIGIEQTSKGNSIAILHGDEVRL
                     IADSDFSDLVAVKKDEQMMRKKKDESRMNESLELLRQDYKLLREKQEYYATSQYQHQE
                     HYFHMPGKVLHLDGDEAYLKKCLNVYKKIGVPVYGIHCHEKKMSASIEVLLDKYRPDI
                     LVITGHDAYSKQKGGIDDLNAYRHSKHFVETVQTARKKIPHLDQLVIFAGACQSHFES
                     LIRAGANFASSPSRVNIHALDPVYIVAKISFTPFMERINVWEVLRNTLTREKGLGGIE
                     TRGVLRIGMPYKSN*"
                     /label="prtG CDS"
     gene            51271..52143
                     /gene="prtG"
                     /locus_tag="BSU_00430"
                     /old_locus_tag="BSU00430"
                     /label="prtG gene"
     downshifts      52130
                     /Source="Nicolas_upshifts"
                     /id="D19"
                     /incds=0
                     /nref=15
                     /ntot=32
                     /MaxReadThrough="2.30424"
                     /MaxDrop="7.1507"
                     /score="26.6672651"
                     /energy="-11.5"
                     /TU="NA"
                     /idTUdmin="U42"
                     /TUdmin=0
                     /isTUend="TRUE"
                     /label="downshifts"
     S_feature       52240..52310
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_52649_52719"
                     /HighExp="S8, S5, S7, S6, S4, BT, LoTm, G/S, nit, T5.0H"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="NA"
                     /TUshortPSig="NA"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S29"
     promotor_-35    52301..52308
                     /Source="Nicolas_upshift_promotors"
                     /id="U43"
                     /multdbtbs="SigA"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.93906093906094"
                     /psig=1
                     /xcortree=3089
                     /SigmaFactorBS="aaataattttattgacaacgtcttattaacgttgatataatt
                     taaatttTATTTGACaaaaatgggctcgTGTTGTACAATAAATGTAGTgaggtggatg
                     c"
                     /listShort="veg, S30, sspF"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     upshifts        52312
                     /Source="Nicolas_upshifts"
                     /id="U43"
                     /multdbtbs="SigA"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.93906093906094"
                     /psig=1
                     /xcortree=3089
                     /SigmaFactorBS="aaataattttattgacaacgtcttattaacgttgatataatt
                     taaatttTATTTGACaaaaatgggctcgTGTTGTACAATAAATGTAGTgaggtggatg
                     c"
                     /listShort="veg, S30, sspF"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-10    52322..52341
                     /Source="Nicolas_upshift_promotors"
                     /id="U43"
                     /multdbtbs="SigA"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.93906093906094"
                     /psig=1
                     /xcortree=3089
                     /SigmaFactorBS="aaataattttattgacaacgtcttattaacgttgatataatt
                     taaatttTATTTGACaaaaatgggctcgTGTTGTACAATAAATGTAGTgaggtggatg
                     c"
                     /listShort="veg, S30, sspF"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     promotor_-10    complement(52331..52345)
                     /Source="Nicolas_upshift_promotors"
                     /id="U44"
                     /multdbtbs="-"
                     /comp="M15"
                     /sig="Sig-"
                     /pcomp="0.996003996003996"
                     /psig="0.000999000999001"
                     /xcortree=718
                     /SigmaFactorBS="attcccatcaagcgatcttttaatatcggacaacgtcttcGC
                     CATtgcatccaCCTCACTACATTTATtgtacaacacgagcccatttttgtcaaataaa
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(52338)
                     /Source="Nicolas_upshifts"
                     /id="U44"
                     /multdbtbs="-"
                     /comp="M15"
                     /sig="Sig-"
                     /pcomp="0.996003996003996"
                     /psig="0.000999000999001"
                     /xcortree=718
                     /SigmaFactorBS="attcccatcaagcgatcttttaatatcggacaacgtcttcGC
                     CATtgcatccaCCTCACTACATTTATtgtacaacacgagcccatttttgtcaaataaa
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(52354..52358)
                     /Source="Nicolas_upshift_promotors"
                     /id="U44"
                     /multdbtbs="-"
                     /comp="M15"
                     /sig="Sig-"
                     /pcomp="0.996003996003996"
                     /psig="0.000999000999001"
                     /xcortree=718
                     /SigmaFactorBS="attcccatcaagcgatcttttaatatcggacaacgtcttcGC
                     CATtgcatccaCCTCACTACATTTATtgtacaacacgagcccatttttgtcaaataaa
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             52354..52614
                     /gene="veg"
                     /locus_tag="BSU_00440"
                     /old_locus_tag="BSU00440"
                     /function="16.11: Scavenge (Catabolism)"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms; PubMedId: 12761295, 22720735, 23378512;
                     Producttype ph: phenotype"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved hypothetical protein"
                     /protein_id="NP_387925.1"
                     /db_xref="EnsemblGenomes-Gn:BSU00440"
                     /db_xref="EnsemblGenomes-Tr:CAB11820"
                     /db_xref="GOA:P37466"
                     /db_xref="InterPro:IPR009366"
                     /db_xref="SubtiList:BG10107"
                     /db_xref="UniProtKB/Swiss-Prot:P37466"
                     /translation="MAKTLSDIKRSLDGNLGKRLTLKANGGRRKTIERSGILAETYPS
                     VFVIQLDQDENSFERVSYSYADILTETVELTFNDDAASSVAF*"
                     /label="veg CDS"
     gene            52354..52614
                     /gene="veg"
                     /locus_tag="BSU_00440"
                     /old_locus_tag="BSU00440"
                     /label="veg gene"
     downshifts      52526
                     /Source="Nicolas_upshifts"
                     /id="D20"
                     /incds=1
                     /nref=4
                     /ntot=158
                     /MaxReadThrough="8.09861"
                     /MaxDrop="2.7867"
                     /score="12.4853319"
                     /energy="-9.9"
                     /TU="U43"
                     /idTUdmin="U42"
                     /TUdmin=396
                     /isTUend="FALSE"
                     /label="downshifts"
     downshifts      52613
                     /Source="Nicolas_upshifts"
                     /id="D21"
                     /incds=0
                     /nref=191
                     /ntot=264
                     /MaxReadThrough="5.88511"
                     /MaxDrop="6.03144"
                     /score="12.4853319"
                     /energy="-9.9"
                     /TU="U43"
                     /idTUdmin="U43"
                     /TUdmin="-331"
                     /isTUend="FALSE"
                     /label="downshifts"
     promotor_-35    52679..52685
                     /Source="Nicolas_upshift_promotors"
                     /id="U45"
                     /multdbtbs="SigG"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp="0.96003996003996"
                     /psig="0.96003996003996"
                     /xcortree=844
                     /SigmaFactorBS="ttttgttttgcccttttttggtttccaataattttaaCGAAA
                     GTtccatctgatttaACAAAAGATAAAacagtcacatattatcgtgacgtgcacgaat
                     g"
                     /listShort="S30, sspF"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    52699..52710
                     /Source="Nicolas_upshift_promotors"
                     /id="U45"
                     /multdbtbs="SigG"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp="0.96003996003996"
                     /psig="0.96003996003996"
                     /xcortree=844
                     /SigmaFactorBS="ttttgttttgcccttttttggtttccaataattttaaCGAAA
                     GTtccatctgatttaACAAAAGATAAAacagtcacatattatcgtgacgtgcacgaat
                     g"
                     /listShort="S30, sspF"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     S_feature       52702..52773
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_53111_53182"
                     /HighExp="S8, Cold, S6, S7, ferm, S5, nit, Etha, G135,
                     LoTm"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigGF, SigA"
                     /TUshortPSig="0.96, 1"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S30"
     upshifts        52702
                     /Source="Nicolas_upshifts"
                     /id="U45"
                     /multdbtbs="SigG"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp="0.96003996003996"
                     /psig="0.96003996003996"
                     /xcortree=844
                     /SigmaFactorBS="ttttgttttgcccttttttggtttccaataattttaaCGAAA
                     GTtccatctgatttaACAAAAGATAAAacagtcacatattatcgtgacgtgcacgaat
                     g"
                     /listShort="S30, sspF"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             52774..52959
                     /gene="sspF"
                     /locus_tag="BSU_00450"
                     /old_locus_tag="BSU00450"
                     /function="16.5: Explore"
                     /function="16.8: Protect"
                     /experiment="publication(s) with functional evidences,
                     PMID:7959056, 8982008, 11092849"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 7959056, 8982008,
                     11092849; Product type cp: cell process"
                     /codon_start=1
                     /transl_table=11
                     /product="small acid-soluble spore protein
                     (alpha/beta-type SASP)"
                     /protein_id="NP_387926.1"
                     /db_xref="EnsemblGenomes-Gn:BSU00450"
                     /db_xref="EnsemblGenomes-Tr:CAB11821"
                     /db_xref="GOA:P37549"
                     /db_xref="InterPro:IPR001448"
                     /db_xref="InterPro:IPR018126"
                     /db_xref="SubtiList:BG10108"
                     /db_xref="UniProtKB/Swiss-Prot:P37549"
                     /translation="MGRRRGVMSDEFKYELAKDLGFYDTVKNGGWGEIRARDAGNMVK
                     RAIEIAEQQMAQNQNNR*"
                     /label="sspF CDS"
     gene            52774..52959
                     /gene="sspF"
                     /locus_tag="BSU_00450"
                     /old_locus_tag="BSU00450"
                     /label="sspF gene"
     downshifts      52944
                     /Source="Nicolas_upshifts"
                     /id="D22"
                     /incds=0
                     /nref=54
                     /ntot=153
                     /MaxReadThrough="2.67408"
                     /MaxDrop="6.21058"
                     /score="38.1065567"
                     /energy="-12.6"
                     /TU="NA"
                     /idTUdmin="U43"
                     /TUdmin=0
                     /isTUend="TRUE"
                     /label="downshifts"
     S_feature       complement(52954..55308)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_53363_55717_c"
                     /HighExp="S5, S4, S6, T5.0H, S3, S8, S7, T4.0H, T3.30H,
                     C30"
                     /AntisenseName="ispE"
                     /AntisenseCor="-0.66604185700913698"
                     /AntisenseRegPval="-35.1"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigEF"
                     /TUshortPSig=1
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S31"
     promotor_-35    53037..53041
                     /Source="Nicolas_upshift_promotors"
                     /id="U46"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.745254745254745"
                     /psig=1
                     /xcortree=2586
                     /SigmaFactorBS="ttttggatataaatacataatgggctgaatatggataTGTTC
                     atcctgtacttcaaaTGTGATACAATGTTCATACTtatgtttagatggagaagtaggt
                     g"
                     /listShort="ispE, purR, yabJ, S32"
                     /listLong="spoVG"
                     /label="promotor_-35"
     promotor_-10    53057..53076
                     /Source="Nicolas_upshift_promotors"
                     /id="U46"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.745254745254745"
                     /psig=1
                     /xcortree=2586
                     /SigmaFactorBS="ttttggatataaatacataatgggctgaatatggataTGTTC
                     atcctgtacttcaaaTGTGATACAATGTTCATACTtatgtttagatggagaagtaggt
                     g"
                     /listShort="ispE, purR, yabJ, S32"
                     /listLong="spoVG"
                     /label="promotor_-10"
     upshifts        53060
                     /Source="Nicolas_upshifts"
                     /id="U46"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.745254745254745"
                     /psig=1
                     /xcortree=2586
                     /SigmaFactorBS="ttttggatataaatacataatgggctgaatatggataTGTTC
                     atcctgtacttcaaaTGTGATACAATGTTCATACTtatgtttagatggagaagtaggt
                     g"
                     /listShort="ispE, purR, yabJ, S32"
                     /listLong="spoVG"
                     /label="upshifts"
     CDS             53107..53976
                     /gene="ispE"
                     /locus_tag="BSU_00460"
                     /old_locus_tag="BSU00460"
                     /EC_number="2.7.1.148"
                     /function="16.2: Construct biomass (Anabolism)"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 2a: Function from experimental evidences
                     in other organisms; PubMedId: 11361082, 12682299,
                     12771135, 17458547, 23840410; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="4-(cytidine
                     5'-diphospho)-2-C-methyl-D-erythritol kinase"
                     /protein_id="NP_387927.1"
                     /db_xref="EnsemblGenomes-Gn:BSU00460"
                     /db_xref="EnsemblGenomes-Tr:CAB11822"
                     /db_xref="GOA:P37550"
                     /db_xref="InterPro:IPR004424"
                     /db_xref="InterPro:IPR006204"
                     /db_xref="InterPro:IPR013750"
                     /db_xref="InterPro:IPR014721"
                     /db_xref="InterPro:IPR020568"
                     /db_xref="InterPro:IPR036554"
                     /db_xref="SubtiList:BG10109"
                     /db_xref="UniProtKB/Swiss-Prot:P37550"
                     /translation="MRILEKAPAKINLSLDVTRKRPDGYHEVEMIMTTIDLADRIELT
                     ELAEDEVRVSSHNRFVPDDQRNLAYQAAKLIKDRYNVKKGVSIMITKVIPVAAGLAGG
                     SSDAAATLRGLNRLWNLNLSAETLAELGAEIGSDVSFCVYGGTALATGRGEKIKHIST
                     PPHCWVILAKPTIGVSTAEVYRALKLDGIEHPDVQGMIEAIEEKSFQKMCSRLGNVLE
                     SVTLDMHPEVAMIKNQMKRFGADAVLMSGSGPTVFGLVQYESKVQRIYNGLRGFCDQV
                     YAVRMIGEQNALD*"
                     /label="ispE CDS"
     gene            53107..53976
                     /gene="ispE"
                     /locus_tag="BSU_00460"
                     /old_locus_tag="BSU00460"
                     /label="ispE gene"
     CDS             54032..54889
                     /gene="purR"
                     /locus_tag="BSU_00470"
                     /old_locus_tag="BSU00470"
                     /function="16.3: Control"
                     /experiment="publication(s) with functional evidences,
                     PMID:11591660, 12837783, 12837784, 15629952, 16163456,
                     27329548"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 11591660, 12837783,
                     12837784, 15629952, 16163456, 27329548; Product type r :
                     regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator of the purine
                     biosynthesis operon (PurR-pRpp)"
                     /protein_id="NP_387928.1"
                     /db_xref="EnsemblGenomes-Gn:BSU00470"
                     /db_xref="EnsemblGenomes-Tr:CAB11823"
                     /db_xref="GOA:P37551"
                     /db_xref="InterPro:IPR000836"
                     /db_xref="InterPro:IPR010078"
                     /db_xref="InterPro:IPR015265"
                     /db_xref="InterPro:IPR029057"
                     /db_xref="InterPro:IPR036388"
                     /db_xref="InterPro:IPR036390"
                     /db_xref="PDB:1O57"
                     /db_xref="PDB:1P4A"
                     /db_xref="SubtiList:BG10110"
                     /db_xref="UniProtKB/Swiss-Prot:P37551"
                     /translation="MKFRRSGRLVDLTNYLLTHPHELIPLTFFSERYESAKSSISEDL
                     TIIKQTFEQQGIGTLLTVPGAAGGVKYIPKMKQAEAEEFVQTLGQSLANPERILPGGY
                     VYLTDILGKPSVLSKVGKLFASVFAEREIDVVMTVATKGIPLAYAAASYLNVPVVIVR
                     KDNKVTEGSTVSINYVSGSSNRIQTMSLAKRSMKTGSNVLIIDDFMKAGGTINGMINL
                     LDEFNANVAGIGVLVEAEGVDERLVDEYMSLLTLSTINMKEKSIEIQNGNFLRFFKDN
                     LLKNGETES*"
                     /label="purR CDS"
     gene            54032..54889
                     /gene="purR"
                     /locus_tag="BSU_00470"
                     /old_locus_tag="BSU00470"
                     /label="purR gene"
     CDS             54886..55263
                     /gene="ridA"
                     /locus_tag="BSU_00480"
                     /old_locus_tag="BSU00480"
                     /EC_number="3.5.99.10"
                     /function="16.6: Maintain"
                     /function="16.3: Control"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 2a: Function from experimental evidences
                     in other organisms; PubMedId: 2113912, 12515541, 14729707,
                     10557275, 10919400, 10368157, 20562306, 23815688; Product
                     type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="aminoacrylate/iminopropionate
                     hydrolase/deaminase"
                     /protein_id="NP_387929.1"
                     /db_xref="EnsemblGenomes-Gn:BSU00480"
                     /db_xref="EnsemblGenomes-Tr:CAB11824"
                     /db_xref="GOA:P37552"
                     /db_xref="InterPro:IPR006056"
                     /db_xref="InterPro:IPR006175"
                     /db_xref="InterPro:IPR019897"
                     /db_xref="InterPro:IPR035959"
                     /db_xref="PDB:1QD9"
                     /db_xref="SubtiList:BG10111"
                     /db_xref="UniProtKB/Swiss-Prot:P37552"
                     /translation="MTKAVHTKHAPAAIGPYSQGIIVNNMFYSSGQIPLTPSGEMVNG
                     DIKEQTHQVFSNLKAVLEEAGASFETVVKATVFIADMEQFAEVNEVYGQYFDTHKPAR
                     SCVEVARLPKDALVEIEVIALVK*"
                     /label="ridA CDS"
     gene            54886..55263
                     /gene="ridA"
                     /locus_tag="BSU_00480"
                     /old_locus_tag="BSU00480"
                     /label="ridA gene"
     downshifts      55253
                     /Source="Nicolas_upshifts"
                     /id="D23"
                     /incds=0
                     /nref=172
                     /ntot=226
                     /MaxReadThrough="3.8891"
                     /MaxDrop="4.63425"
                     /score="22.9159767"
                     /energy="-12.3"
                     /TU="U46"
                     /idTUdmin="U46"
                     /TUdmin="-155"
                     /isTUend="FALSE"
                     /label="downshifts"
     promotor_-10    complement(55297..55315)
                     /Source="Nicolas_upshift_promotors"
                     /id="U47"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp=1
                     /psig=1
                     /xcortree=1146
                     /SigmaFactorBS="ttttgaaaaaataggatatagttacacaattagGTCATAaag
                     ctttcatttcggGCATAAGGTAAATAAAAAAgtgatcccggctctcccagaatcactt
                     t"
                     /listShort="S31"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     S_feature       55298..55406
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_55707_55815"
                     /HighExp="S8, S7, Etha, B36, LoTm, C30, Sw, B60, G135,
                     G180"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig=1
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S32"
     upshifts        complement(55309)
                     /Source="Nicolas_upshifts"
                     /id="U47"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp=1
                     /psig=1
                     /xcortree=1146
                     /SigmaFactorBS="ttttgaaaaaataggatatagttacacaattagGTCATAaag
                     ctttcatttcggGCATAAGGTAAATAAAAAAgtgatcccggctctcccagaatcactt
                     t"
                     /listShort="S31"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(55331..55336)
                     /Source="Nicolas_upshift_promotors"
                     /id="U47"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp=1
                     /psig=1
                     /xcortree=1146
                     /SigmaFactorBS="ttttgaaaaaataggatatagttacacaattagGTCATAaag
                     ctttcatttcggGCATAAGGTAAATAAAAAAgtgatcccggctctcccagaatcactt
                     t"
                     /listShort="S31"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-35    55386..55394
                     /Source="Nicolas_upshift_promotors"
                     /id="U48"
                     /multdbtbs="SigH"
                     /comp="M1"
                     /sig="SigH"
                     /pcomp=1
                     /psig=1
                     /xcortree=524
                     /SigmaFactorBS="actatatcctattttttcaaaaaatattttaaaaacgaGCAG
                     GATTTcagaaaaaatCGTGGAATTGATACACTAAtgcttttatatagggaaaaggtgg
                     t"
                     /listShort="spoVG, S33, gcaD, prs"
                     /listLong="ctc, pth, yabK, S34, mfd, S35, spoVT"
                     /label="promotor_-35"
     promotor_-10    55405..55423
                     /Source="Nicolas_upshift_promotors"
                     /id="U48"
                     /multdbtbs="SigH"
                     /comp="M1"
                     /sig="SigH"
                     /pcomp=1
                     /psig=1
                     /xcortree=524
                     /SigmaFactorBS="actatatcctattttttcaaaaaatattttaaaaacgaGCAG
                     GATTTcagaaaaaatCGTGGAATTGATACACTAAtgcttttatatagggaaaaggtgg
                     t"
                     /listShort="spoVG, S33, gcaD, prs"
                     /listLong="ctc, pth, yabK, S34, mfd, S35, spoVT"
                     /label="promotor_-10"
     upshifts        55408
                     /Source="Nicolas_upshifts"
                     /id="U48"
                     /multdbtbs="SigH"
                     /comp="M1"
                     /sig="SigH"
                     /pcomp=1
                     /psig=1
                     /xcortree=524
                     /SigmaFactorBS="actatatcctattttttcaaaaaatattttaaaaacgaGCAG
                     GATTTcagaaaaaatCGTGGAATTGATACACTAAtgcttttatatagggaaaaggtgg
                     t"
                     /listShort="spoVG, S33, gcaD, prs"
                     /listLong="ctc, pth, yabK, S34, mfd, S35, spoVT"
                     /label="upshifts"
     CDS             55457..55750
                     /gene="spoVG"
                     /locus_tag="BSU_00490"
                     /old_locus_tag="BSU00490"
                     /function="16.3: Control"
                     /function="16.13: Shape"
                     /experiment="publication(s) with functional evidences,
                     PMID:9733708, 10348850, 10648512, 16428420, 27048798"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 9733708, 10348850,
                     10648512, 16428420, 27048798; Product type r: regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="regulator required for spore cortex synthesis
                     (stage V sporulation)"
                     /protein_id="NP_387930.1"
                     /db_xref="EnsemblGenomes-Gn:BSU00490"
                     /db_xref="EnsemblGenomes-Tr:CAB11825"
                     /db_xref="GOA:P28015"
                     /db_xref="InterPro:IPR007170"
                     /db_xref="InterPro:IPR036751"
                     /db_xref="PDB:2IA9"
                     /db_xref="SubtiList:BG10112"
                     /db_xref="UniProtKB/Swiss-Prot:P28015"
                     /translation="MEVTDVRLRRVNTDGRMRAIASITLDHEFVVHDIRVIDGNNGLF
                     VAMPSKRTPDGEFRDITHPINSSTRGKIQDAVLNEYHRLGDTEALEFEEAGAS*"
                     /label="spoVG CDS"
     gene            55457..55750
                     /gene="spoVG"
                     /locus_tag="BSU_00490"
                     /old_locus_tag="BSU00490"
                     /label="spoVG gene"
     downshifts      55739
                     /Source="Nicolas_upshifts"
                     /id="D24"
                     /incds=0
                     /nref=263
                     /ntot=285
                     /MaxReadThrough="5.11673"
                     /MaxDrop="7.2673"
                     /score="19.392304"
                     /energy="-22.3"
                     /TU="U48"
                     /idTUdmin="U46"
                     /TUdmin=331
                     /isTUend="FALSE"
                     /label="downshifts"
     S_feature       55784..55895
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_56193_56304"
                     /HighExp="B60, B36, M9-stat, S2, BT, LoTm, Etha, Lbstat,
                     T0.30H, T4.0H"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigH"
                     /TUshortPSig=1
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S33"
     promotor_-35    55877..55881
                     /Source="Nicolas_upshift_promotors"
                     /id="U49"
                     /multdbtbs="SigA"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.895104895104895"
                     /psig="0.996003996003996"
                     /xcortree=2611
                     /SigmaFactorBS="agttgcactcaatagaaaattcttgcacttcatgaagtctCC
                     TTGaaatcagaagatattTAGGATATATTTTTCTATGGataaaagggatattggaggc
                     c"
                     /listShort="gcaD, prs, ctc, pth, yabK, S34, mfd, S35,
                     spoVT"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    55897..55916
                     /Source="Nicolas_upshift_promotors"
                     /id="U49"
                     /multdbtbs="SigA"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.895104895104895"
                     /psig="0.996003996003996"
                     /xcortree=2611
                     /SigmaFactorBS="agttgcactcaatagaaaattcttgcacttcatgaagtctCC
                     TTGaaatcagaagatattTAGGATATATTTTTCTATGGataaaagggatattggaggc
                     c"
                     /listShort="gcaD, prs, ctc, pth, yabK, S34, mfd, S35,
                     spoVT"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        55897
                     /Source="Nicolas_upshifts"
                     /id="U49"
                     /multdbtbs="SigA"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.895104895104895"
                     /psig="0.996003996003996"
                     /xcortree=2611
                     /SigmaFactorBS="agttgcactcaatagaaaattcttgcacttcatgaagtctCC
                     TTGaaatcagaagatattTAGGATATATTTTTCTATGGataaaagggatattggaggc
                     c"
                     /listShort="gcaD, prs, ctc, pth, yabK, S34, mfd, S35,
                     spoVT"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             55943..57313
                     /gene="glmU"
                     /locus_tag="BSU_00500"
                     /old_locus_tag="BSU00500"
                     /EC_number="2.3.1.157"
                     /EC_number="2.7.7.23"
                     /function="16.2: Construct biomass (Anabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:1328164, 8522540, 9648743, 11124906, 20495944,
                     23485416, 24915076"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 1328164, 8522540,
                     9648743, 11124906, 20495944, 23485416, 24915076; Product
                     type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional glucosamine-1-phosphate
                     N-acetyltransferase/UDP-N-acetylglucosamine
                     pyrophosphorylase"
                     /protein_id="NP_387931.1"
                     /db_xref="EnsemblGenomes-Gn:BSU00500"
                     /db_xref="EnsemblGenomes-Tr:CAB11826"
                     /db_xref="GOA:P14192"
                     /db_xref="InterPro:IPR001451"
                     /db_xref="InterPro:IPR005835"
                     /db_xref="InterPro:IPR005882"
                     /db_xref="InterPro:IPR011004"
                     /db_xref="InterPro:IPR018357"
                     /db_xref="InterPro:IPR029044"
                     /db_xref="SubtiList:BG10113"
                     /db_xref="UniProtKB/Swiss-Prot:P14192"
                     /translation="MDKRFAVVLAAGQGTRMKSKLYKVLHPVCGKPMVEHVVDEALKL
                     SLSKLVTIVGHGAEEVKKQLGDKSEYALQAKQLGTAHAVKQAQPFLADEKGVTIVICG
                     DTPLLTAETMEQMLKEHTQREAKATILTAVAEDPTGYGRIIRSENGAVQKIVEHKDAS
                     EEERLVTEINTGTYCFDNEALFRAIDQVSNDNAQGEYYLPDVIEILKNEGETVAAYQT
                     GNFQETLGVNDRVALSQAEQFMKERINKRHMQNGVTLIDPMNTYISPDAVIGSDTVIY
                     PGTVIKGEVQIGEDTIIGPHTEIMNSAIGSRTVIKQSVVNHSKVGNDVNIGPFAHIRP
                     DSVIGNEVKIGNFVEIKKTQFGDRSKASHLSYVGDAEVGTDVNLGCGSITVNYDGKNK
                     YLTKIEDGAFIGCNSNLVAPVTVGEGAYVAAGSTVTEDVPGKALAIARARQVNKDDYV
                     KNIHKK*"
                     /label="glmU CDS"
     gene            55943..57313
                     /gene="glmU"
                     /locus_tag="BSU_00500"
                     /old_locus_tag="BSU00500"
                     /label="glmU gene"
     downshifts      complement(57288)
                     /Source="Nicolas_upshifts"
                     /id="D25"
                     /incds=0
                     /nref=5
                     /ntot=84
                     /MaxReadThrough="2.39379"
                     /MaxDrop="3.65636"
                     /score="-7.65702938"
                     /energy="-13.8"
                     /TU="NA"
                     /idTUdmin="U47"
                     /TUdmin="-4312"
                     /isTUend="FALSE"
                     /label="downshifts"
     CDS             57336..58289
                     /gene="prs"
                     /locus_tag="BSU_00510"
                     /old_locus_tag="BSU00510"
                     /EC_number="2.7.6.1"
                     /function="16.2: Construct biomass (Anabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:2169413, 3038693, 8522540, 22083279, 25890046"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 2169413, 3038693,
                     8522540, 22083279, 25890046; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylpyrophosphate synthetase"
                     /protein_id="NP_387932.1"
                     /db_xref="EnsemblGenomes-Gn:BSU00510"
                     /db_xref="EnsemblGenomes-Tr:CAB11827"
                     /db_xref="GOA:P14193"
                     /db_xref="InterPro:IPR000836"
                     /db_xref="InterPro:IPR000842"
                     /db_xref="InterPro:IPR005946"
                     /db_xref="InterPro:IPR029057"
                     /db_xref="InterPro:IPR029099"
                     /db_xref="PDB:1DKR"
                     /db_xref="PDB:1DKU"
                     /db_xref="PDB:1IBS"
                     /db_xref="SubtiList:BG10114"
                     /db_xref="UniProtKB/Swiss-Prot:P14193"
                     /translation="MSNQYGDKNLKIFSLNSNPELAKEIADIVGVQLGKCSVTRFSDG
                     EVQINIEESIRGCDCYIIQSTSDPVNEHIMELLIMVDALKRASAKTINIVIPYYGYAR
                     QDRKARSREPITAKLFANLLETAGATRVIALDLHAPQIQGFFDIPIDHLMGVPILGEY
                     FEGKNLEDIVIVSPDHGGVTRARKLADRLKAPIAIIDKRRPRPNVAEVMNIVGNIEGK
                     TAILIDDIIDTAGTITLAANALVENGAKEVYACCTHPVLSGPAVERINNSTIKELVVT
                     NSIKLPEEKKIERFKQLSVGPLLAEAIIRVHEQQSVSYLFS*"
                     /label="prs CDS"
     gene            57336..58289
                     /gene="prs"
                     /locus_tag="BSU_00510"
                     /old_locus_tag="BSU00510"
                     /label="prs gene"
     promotor_-35    58302..58308
                     /Source="Nicolas_upshift_promotors"
                     /id="U50"
                     /multdbtbs="SigB"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp=1
                     /psig=1
                     /xcortree=265
                     /SigmaFactorBS="agcaatcagtcagctatctgttcagctaaaccatttttcgaG
                     GTTTAAatccttatcgttatGGGTATTGTTTGTAATAGGacaactaaaacgacaagag
                     g"
                     /listShort="ctc, pth, yabK, S34, mfd, S35, spoVT"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     upshifts        58321
                     /Source="Nicolas_upshifts"
                     /id="U50"
                     /multdbtbs="SigB"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp=1
                     /psig=1
                     /xcortree=265
                     /SigmaFactorBS="agcaatcagtcagctatctgttcagctaaaccatttttcgaG
                     GTTTAAatccttatcgttatGGGTATTGTTTGTAATAGGacaactaaaacgacaagag
                     g"
                     /listShort="ctc, pth, yabK, S34, mfd, S35, spoVT"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-10    58323..58341
                     /Source="Nicolas_upshift_promotors"
                     /id="U50"
                     /multdbtbs="SigB"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp=1
                     /psig=1
                     /xcortree=265
                     /SigmaFactorBS="agcaatcagtcagctatctgttcagctaaaccatttttcgaG
                     GTTTAAatccttatcgttatGGGTATTGTTTGTAATAGGacaactaaaacgacaagag
                     g"
                     /listShort="ctc, pth, yabK, S34, mfd, S35, spoVT"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     CDS             58374..58988
                     /gene="ctc"
                     /locus_tag="BSU_00520"
                     /old_locus_tag="BSU00520"
                     /function="16.2: Construct biomass (Anabolism)"
                     /function="16.6: Maintain"
                     /function="16.8: Protect"
                     /experiment="publication(s) with functional evidences,
                     PMID:8522540, 9669336, 10369900, 12432960, 17198710"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 8522540, 9669336,
                     10369900, 12432960, 17198710; Product type f: factor"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosomal protein BL25 (Ctc), binding 5S RNA"
                     /protein_id="NP_387933.1"
                     /db_xref="EnsemblGenomes-Gn:BSU00520"
                     /db_xref="EnsemblGenomes-Tr:CAB11828"
                     /db_xref="GOA:P14194"
                     /db_xref="InterPro:IPR001021"
                     /db_xref="InterPro:IPR011035"
                     /db_xref="InterPro:IPR020056"
                     /db_xref="InterPro:IPR020057"
                     /db_xref="InterPro:IPR029751"
                     /db_xref="InterPro:IPR037121"
                     /db_xref="SubtiList:BG10115"
                     /db_xref="UniProtKB/Swiss-Prot:P14194"
                     /translation="MATLTAKERTDFTRSSLRNIRTSGHVPGIIYGKDTGNKPVSLDS
                     VELIKTLRDEGKNAVITLEVSGEKHSVMVTDLQTDPLKNEITHADFQVVNMSEDIEVE
                     VPIHLTGEAIGVKNGGVLQQPLYALTVKAKPKAIPQTIEADISSLDVNEVLTIADLPA
                     GGDYSFNHESDEVVASILPPQQQEAAEVDEEESADAQPEGENEQ*"
                     /label="ctc CDS"
     gene            58374..58988
                     /gene="ctc"
                     /locus_tag="BSU_00520"
                     /old_locus_tag="BSU00520"
                     /label="ctc gene"
     downshifts      58972
                     /Source="Nicolas_upshifts"
                     /id="D26"
                     /incds=0
                     /nref=120
                     /ntot=249
                     /MaxReadThrough="8.65206"
                     /MaxDrop="5.4784"
                     /score="1.94770319"
                     /energy="-11.2"
                     /TU="U49,U50"
                     /idTUdmin="U48"
                     /TUdmin=682
                     /isTUend="FALSE"
                     /label="downshifts"
     CDS             59095..59661
                     /gene="pth"
                     /locus_tag="BSU_00530"
                     /old_locus_tag="BSU00530"
                     /EC_number="3.1.1.29"
                     /function="16.8: Protect"
                     /function="16.11: Scavenge (Catabolism)"
                     /function="16.6: Maintain"
                     /experiment="publication(s) with functional evidences,
                     PMID:8635758, 12100553, 12682299"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 8635758, 12100553,
                     12682299; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="peptidyl-tRNA hydrolase"
                     /protein_id="NP_387934.1"
                     /db_xref="EnsemblGenomes-Gn:BSU00530"
                     /db_xref="EnsemblGenomes-Tr:CAB11829"
                     /db_xref="GOA:P37470"
                     /db_xref="InterPro:IPR001328"
                     /db_xref="InterPro:IPR018171"
                     /db_xref="InterPro:IPR036416"
                     /db_xref="SubtiList:BG10116"
                     /db_xref="UniProtKB/Swiss-Prot:P37470"
                     /translation="MLVIAGLGNPGKNYENTRHNVGFMVIDQLAKEWNIELNQNKFNG
                     LYGTGFVSGKKVLLVKPLTYMNLSGECLRPLMDYYDVDNEDLTVIYDDLDLPTGKIRL
                     RTKGSAGGHNGIKSLIQHLGTSEFDRIRIGIGRPVNGMKVVDYVLGSFTKEEAPEIEE
                     AVDKSVKACEASLSKPFLEVMNEFNAKV*"
                     /label="pth CDS"
     gene            59095..59661
                     /gene="pth"
                     /locus_tag="BSU_00530"
                     /old_locus_tag="BSU00530"
                     /label="pth gene"
     misc_feature    59274..59277
                     /Source="Nicolas_upshift_promotors"
                     /id="U51"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="Sig-"
                     /pcomp="0.210789210789211"
                     /psig="0.210789210789211"
                     /xcortree=737
                     /SigmaFactorBS="taacggattatacggaaccggatttgtttccggcaaaaaggt
                     tctacttgttaaACCGcttacatatatgaatttatcaggagaatgtttgcggccttta
                     a"
                     /listShort="yabK, S34, mfd, S35, spoVT"
                     /GFF_Attribute="listLong"
                     /label="promotor_single_box"
                     /note="Geneious type: promotor_single_box"
     upshifts        59280
                     /Source="Nicolas_upshifts"
                     /id="U51"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="Sig-"
                     /pcomp="0.210789210789211"
                     /psig="0.210789210789211"
                     /xcortree=737
                     /SigmaFactorBS="taacggattatacggaaccggatttgtttccggcaaaaaggt
                     tctacttgttaaACCGcttacatatatgaatttatcaggagaatgtttgcggccttta
                     a"
                     /listShort="yabK, S34, mfd, S35, spoVT"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             59721..59951
                     /gene="fin"
                     /locus_tag="BSU_00540"
                     /old_locus_tag="BSU00540"
                     /experiment="publication(s) with functional evidences,
                     PMID:21037003, 28598017"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 21037003, 28598017;
                     Product type f: factor"
                     /codon_start=1
                     /transl_table=11
                     /product="protein required for the switch from F to G
                     during sporulation (anti sigma F)"
                     /protein_id="NP_387935.1"
                     /db_xref="EnsemblGenomes-Gn:BSU00540"
                     /db_xref="EnsemblGenomes-Tr:CAB11830"
                     /db_xref="GOA:P37553"
                     /db_xref="InterPro:IPR020115"
                     /db_xref="PDB:5MSL"
                     /db_xref="SubtiList:BG10117"
                     /db_xref="UniProtKB/Swiss-Prot:P37553"
                     /translation="MALHYYCRHCGVKVGSLESSMVSTDSLGFQHLTNEERNDMISYK
                     ENGDVHVLTICEDCQEALDRNPHYHEYHTFIQ*"
                     /label="fin CDS"
     gene            59721..59951
                     /gene="fin"
                     /locus_tag="BSU_00540"
                     /old_locus_tag="BSU00540"
                     /label="fin gene"
     S_feature       59952..60020
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_60361_60429"
                     /HighExp="Etha, S5, S4, S7, S8, S6, S3, H2O2, Diami, G180"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="Sig-, SigB, SigA"
                     /TUshortPSig="0.211, 1, 0.996"
                     /TUlongSig="SigH"
                     /TUlongPSig=1
                     /label="S34"
     CDS             60021..63554
                     /gene="mfd"
                     /locus_tag="BSU_00550"
                     /old_locus_tag="BSU00550"
                     /function="16.6: Maintain"
                     /function="16.8: Protect"
                     /experiment="publication(s) with functional evidences,
                     PMID:8594198, 9535092, 11065368, 16950921, 22248542,
                     25713353, 27399782, 27435260"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 8594198, 9535092,
                     11065368, 16950921, 22248542, 25713353, 27399782,
                     27435260; Product type f: factor"
                     /codon_start=1
                     /transl_table=11
                     /product="transcription-repair coupling factor"
                     /protein_id="NP_387936.1"
                     /db_xref="EnsemblGenomes-Gn:BSU00550"
                     /db_xref="EnsemblGenomes-Tr:CAB11831"
                     /db_xref="GOA:P37474"
                     /db_xref="InterPro:IPR001650"
                     /db_xref="InterPro:IPR003711"
                     /db_xref="InterPro:IPR004576"
                     /db_xref="InterPro:IPR005118"
                     /db_xref="InterPro:IPR011545"
                     /db_xref="InterPro:IPR014001"
                     /db_xref="InterPro:IPR027417"
                     /db_xref="InterPro:IPR036101"
                     /db_xref="SubtiList:BG10118"
                     /db_xref="UniProtKB/Swiss-Prot:P37474"
                     /translation="MDNIQTFIKESDDFKSIINGLHEGLKEQLLAGLSGSARSVFTSA
                     LANETNKPIFLITHNLYQAQKVTDDLTSLLEDRSVLLYPVNELISSEIAVASPELRAQ
                     RLDVINRLTNGEAPIVVAPVAAIRRMLPPVEVWKSSQMLIQVGHDIEPDQLASRLVEV
                     GYERSDMVSAPGEFSIRGGIIDIYPLTSENPVRIELFDTEVDSIRSFNSDDQRSIETL
                     TSINIGPAKELIIRPEEKARAMEKIDSGLAASLKKLKADKQKEILHANISHDKERLSE
                     GQTDQELVKYLSYFYEKPASLLDYTPDNTLLILDEVSRIHEMEEQLQKEEAEFITNLL
                     EEGKILHDIRLSFSFQKIVAEQKRPLLYYSLFLRHVHHTSPQNIVNVSGRQMQSFHGQ
                     MNVLAGEMERFKKSNFTVVFLGANKERTQKLSSVLADYDIEAAMTDSKKALVQGQVYI
                     MEGELQSGFELPLMKLAVITEEELFKNRVKKKPRKQKLTNAERIKSYSELQIGDYVVH
                     INHGIGKYLGIETLEINGIHKDYLNIHYQGSDKLYVPVEQIDQVQKYVGSEGKEPKLY
                     KLGGSEWKRVKKKVETSVQDIADDLIKLYAEREASKGYAFSPDHEMQREFESAFPYQE
                     TEDQLRSIHEIKKDMERERPMDRLLCGDVGYGKTEVAIRAAFKAIGDGKQVALLVPTT
                     ILAQQHYETIKERFQDYPINIGLLSRFRTRKEANETIKGLKNGTVDIVIGTHRLLSKD
                     VVYKDLGLLIIDEEQRFGVTHKEKIKQIKANVDVLTLTATPIPRTLHMSMLGVRDLSV
                     IETPPENRFPVQTYVVEYNGALVREAIERELARGGQVYFLYNRVEDIERKADEISMLV
                     PDAKVAYAHGKMTENELETVMLSFLEGESDVLVSTTIIETGVDIPNVNTLIVFDADKM
                     GLSQLYQLRGRVGRSNRVAYAYFTYRRDKVLTEVAEKRLQAIKEFTELGSGFKIAMRD
                     LTIRGAGNLLGAQQHGFIDSVGFDLYSQMLKEAIEERKGDTAKTEQFETEIDVELDAY
                     IPETYIQDGKQKIDMYKRFRSVATIEEKNELQDEMIDRFGNYPKEVEYLFTVAEMKVY
                     ARQERVELIKQDKDAVRLTISEEASAEIDGQKLFELGNQYGRQIGLGMEGKKLKISIQ
                     TKGRSADEWLDTVLGMLKGLKDVKKQTISST*"
                     /label="mfd CDS"
     gene            60021..63554
                     /gene="mfd"
                     /locus_tag="BSU_00550"
                     /old_locus_tag="BSU00550"
                     /label="mfd gene"
     promotor_-35    63572..63578
                     /Source="Nicolas_upshift_promotors"
                     /id="U52"
                     /multdbtbs="SigG"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp=1
                     /psig=1
                     /xcortree=914
                     /SigmaFactorBS="agcaaaccatttcatcaacgtaaattttgttactctctggTG
                     TATATtacatttgatgtgACGGATACTAATttcaagcgaggcggaaggtacataaagt
                     a"
                     /listShort="S35, spoVT"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     S_feature       63592..63689
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_64001_64098"
                     /HighExp="S5, S7, S8, S6, S4, Etha, S3, H2O2, G135, G180"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigGF, Sig-, SigB, SigA"
                     /TUshortPSig="1, 0.211, 1, 0.996"
                     /TUlongSig="SigH"
                     /TUlongPSig=1
                     /label="S35"
     promotor_-10    63592..63603
                     /Source="Nicolas_upshift_promotors"
                     /id="U52"
                     /multdbtbs="SigG"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp=1
                     /psig=1
                     /xcortree=914
                     /SigmaFactorBS="agcaaaccatttcatcaacgtaaattttgttactctctggTG
                     TATATtacatttgatgtgACGGATACTAATttcaagcgaggcggaaggtacataaagt
                     a"
                     /listShort="S35, spoVT"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        63592
                     /Source="Nicolas_upshifts"
                     /id="U52"
                     /multdbtbs="SigG"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp=1
                     /psig=1
                     /xcortree=914
                     /SigmaFactorBS="agcaaaccatttcatcaacgtaaattttgttactctctggTG
                     TATATtacatttgatgtgACGGATACTAATttcaagcgaggcggaaggtacataaagt
                     a"
                     /listShort="S35, spoVT"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             63690..64226
                     /gene="spoVT"
                     /locus_tag="BSU_00560"
                     /old_locus_tag="BSU00560"
                     /function="16.3: Control"
                     /experiment="publication(s) with functional evidences,
                     PMID:8755877, 15063493, 15939023, 16159768, 18996130,
                     22522895, 27790204"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 8755877, 15063493,
                     15939023, 16159768, 18996130, 22522895, 27790204; Product
                     type r: regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator of sporulation /
                     germination"
                     /protein_id="NP_387937.1"
                     /db_xref="EnsemblGenomes-Gn:BSU00560"
                     /db_xref="EnsemblGenomes-Tr:CAB11832"
                     /db_xref="GOA:P37554"
                     /db_xref="InterPro:IPR007159"
                     /db_xref="InterPro:IPR014213"
                     /db_xref="PDB:2RO5"
                     /db_xref="PDB:2W1R"
                     /db_xref="PDB:2W1T"
                     /db_xref="SubtiList:BG10119"
                     /db_xref="UniProtKB/Swiss-Prot:P37554"
                     /translation="MKATGIVRRIDDLGRVVIPKEIRRTLRIREGDPLEIFVDRDGEV
                     ILKKYSPISELGDFAKEYADALYDSLGHSVLICDRDVYIAVSGSSKKDYLNKSISEML
                     ERTMDQRSSVLESDAKSVQLVNGIDEDMNSYTVGPIVANGDPIGAVVIFSKDQTMGEV
                     EHKAVETAAGFLARQMEQ*"
                     /label="spoVT CDS"
     gene            63690..64226
                     /gene="spoVT"
                     /locus_tag="BSU_00560"
                     /old_locus_tag="BSU00560"
                     /label="spoVT gene"
     downshifts      64230
                     /Source="Nicolas_upshifts"
                     /id="D27"
                     /incds=0
                     /nref=236
                     /ntot=260
                     /MaxReadThrough="1.92082"
                     /MaxDrop="6.20706"
                     /score="-2.69593259"
                     /energy="-11.6"
                     /TU="NA"
                     /idTUdmin="U49"
                     /TUdmin=0
                     /isTUend="TRUE"
                     /label="downshifts"
     misc_feature    64326..64345
                     /Source="Nicolas_upshift_promotors"
                     /id="U53"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.946053946053946"
                     /psig=1
                     /xcortree=1839
                     /SigmaFactorBS="gacgctgttctttttcatgcgtgccgaaaaaggaatccaagg
                     gttgggaTGTGGTATAATAACCTCGTTtttatttgtgccgcggtaatacgtgaaccgt
                     a"
                     /listShort="yabM, yabN, yabO, yabP, yabQ, divIC, yabR"
                     /GFF_Attribute="listLong"
                     /label="promotor_single_box"
                     /note="Geneious type: promotor_single_box"
     upshifts        64337
                     /Source="Nicolas_upshifts"
                     /id="U53"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.946053946053946"
                     /psig=1
                     /xcortree=1839
                     /SigmaFactorBS="gacgctgttctttttcatgcgtgccgaaaaaggaatccaagg
                     gttgggaTGTGGTATAATAACCTCGTTtttatttgtgccgcggtaatacgtgaaccgt
                     a"
                     /listShort="yabM, yabN, yabO, yabP, yabQ, divIC, yabR"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             64408..66006
                     /gene="yabM"
                     /locus_tag="BSU_00570"
                     /old_locus_tag="BSU00570"
                     /function="16.1: Circulate"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 15849754, 16850406;
                     Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="putative exporter"
                     /protein_id="NP_387938.1"
                     /db_xref="EnsemblGenomes-Gn:BSU00570"
                     /db_xref="EnsemblGenomes-Tr:CAB11833"
                     /db_xref="GOA:P37555"
                     /db_xref="InterPro:IPR002797"
                     /db_xref="InterPro:IPR024923"
                     /db_xref="InterPro:IPR029303"
                     /db_xref="SubtiList:BG10120"
                     /db_xref="UniProtKB/Swiss-Prot:P37555"
                     /translation="MDDSIGVKRHWIWQGAFVLILAGVITKILSAVYRVPFQNIVGDV
                     GFYIYQQVYPFLGIAVMLSTSGFPVIISKLMNDYSEKNHHTILKISALFLSLIGILLF
                     LCLYLGAVPIALFMGDSHLAVLIQVAAYAFLLFPFVALLRGGFQGRHEMLPSALSQMT
                     EQFLRVAVLLGLSFWLVKKGASLYTAGAAAASGSLAGSLVALIILGFFWFKTKRDNQT
                     DRQNENVITTKELTKKLLLYSVTICVSSLLLLFIQLVDALNLYALLSGGEASEEAKCL
                     KGIYDRGQPLLQLGSVFAVSIATSLVPYISMAVKNKELKIMKEKITSSLKLCLVLGTG
                     ASAGLICILKPVNIMLFQNGEGTGALQVFSCSILFASLAVTAAAVLQGAGYTVFPAIA
                     VGAGVAVKWVLNTLLVPRYGIEGASLATAASFAAVAGLNLYQLRQKEWLDKLRGVLIP
                     IIGSALLMSAVLLAYTRLWTFLFPATGRGAAVIESLSAVAIGGAVFIYCMMRLGIFTD
                     EELNSVPFGSKLSKFMRRREQNGG*"
                     /label="yabM CDS"
     gene            64408..66006
                     /gene="yabM"
                     /locus_tag="BSU_00570"
                     /old_locus_tag="BSU00570"
                     /label="yabM gene"
     promotor_-35    65877..65884
                     /Source="Nicolas_upshift_promotors"
                     /id="U54"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.739260739260739"
                     /psig="0.798201798201798"
                     /xcortree=108
                     /SigmaFactorBS="gattgagagtctttctgctgttgcCATTGGTGgcgcggtgtt
                     tattTATTGTATGATGAGATTGGGaatatttacagatgaagagctgaacagtgtgcca
                     t"
                     /listShort="yabN, yabO, yabP, yabQ"
                     /listLong="divIC, yabR"
                     /label="promotor_-35"
     promotor_-10    65899..65918
                     /Source="Nicolas_upshift_promotors"
                     /id="U54"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.739260739260739"
                     /psig="0.798201798201798"
                     /xcortree=108
                     /SigmaFactorBS="gattgagagtctttctgctgttgcCATTGGTGgcgcggtgtt
                     tattTATTGTATGATGAGATTGGGaatatttacagatgaagagctgaacagtgtgcca
                     t"
                     /listShort="yabN, yabO, yabP, yabQ"
                     /listLong="divIC, yabR"
                     /label="promotor_-10"
     upshifts        65913
                     /Source="Nicolas_upshifts"
                     /id="U54"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.739260739260739"
                     /psig="0.798201798201798"
                     /xcortree=108
                     /SigmaFactorBS="gattgagagtctttctgctgttgcCATTGGTGgcgcggtgtt
                     tattTATTGTATGATGAGATTGGGaatatttacagatgaagagctgaacagtgtgcca
                     t"
                     /listShort="yabN, yabO, yabP, yabQ"
                     /listLong="divIC, yabR"
                     /label="upshifts"
     CDS             65996..67465
                     /gene="yabN"
                     /locus_tag="BSU_00580"
                     /old_locus_tag="BSU00580"
                     /function="16.6: Maintain"
                     /function="16.8: Protect"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 11178267; Product type
                     e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative fusion methylase and nucleotide
                     pyrophosphohydrolase"
                     /protein_id="NP_387939.1"
                     /db_xref="EnsemblGenomes-Gn:BSU00580"
                     /db_xref="EnsemblGenomes-Tr:CAB11834"
                     /db_xref="GOA:P37556"
                     /db_xref="InterPro:IPR000878"
                     /db_xref="InterPro:IPR004518"
                     /db_xref="InterPro:IPR011551"
                     /db_xref="InterPro:IPR014777"
                     /db_xref="InterPro:IPR024180"
                     /db_xref="InterPro:IPR035013"
                     /db_xref="InterPro:IPR035996"
                     /db_xref="SubtiList:BG10121"
                     /db_xref="UniProtKB/Swiss-Prot:P37556"
                     /translation="MAGKITVVGLGAGDMDQLTIGIHKLLTKADTLYVRTKDHPLIEE
                     LEKETKNIRFFDDIYEKHDQFEAVYEEIADILFEAARREDVVYAVPGHPFVAEKTVQL
                     LTERQEKENVQVKVAGGQSFLDATFNVLQIDPIEGFQFVDAGTLSADELELRHHLIIC
                     QVYDQMTASEVKLTLMEKLPDDYEVVIVTAAGSRGEEIRTVPLFELDRNVALNNLTSV
                     YIPPIKEEKLLYHEFSTFRSIIRELRGPNGCPWDKKQTHQSLKQYMIEECYELLEAID
                     EEDTDHMIEELGDVLLQVLLHAQIGEDEGYFTIDDVIKGISEKMVRRHPHVFKDVKVQ
                     DENDVLANWEDIKKAEKNTSESSLLDSVPKTLPALSKAAKLQKKAAKVGFDWEDVSDI
                     WEKVSEEMKEFSSEVSEAPHEHNLKAEFGDILFALVNVARFYKIEPEEALTMTNDKFR
                     RRFSYIEETAKEEGVELADMSLEDMDKLWNEAKETERRS*"
                     /label="yabN CDS"
     gene            65996..67465
                     /gene="yabN"
                     /locus_tag="BSU_00580"
                     /old_locus_tag="BSU00580"
                     /label="yabN gene"
     promotor_-35    66637..66644
                     /Source="Nicolas_upshift_promotors"
                     /id="U55"
                     /multdbtbs="-"
                     /comp="M10"
                     /sig="SigD"
                     /pcomp=1
                     /psig=1
                     /xcortree=2822
                     /SigmaFactorBS="tggaccgcaatgtcgctttgaacaaCTTAACAAgtgtgtata
                     ttccGCCGATTAAAGAAGAGAAGctgctttatcacgaattctccacgttccgaagcat
                     c"
                     /listShort="yabO, yabP, yabQ, divIC, yabR"
                     /listLong="trnSL-Met1"
                     /label="promotor_-35"
     promotor_-10    66658..66676
                     /Source="Nicolas_upshift_promotors"
                     /id="U55"
                     /multdbtbs="-"
                     /comp="M10"
                     /sig="SigD"
                     /pcomp=1
                     /psig=1
                     /xcortree=2822
                     /SigmaFactorBS="tggaccgcaatgtcgctttgaacaaCTTAACAAgtgtgtata
                     ttccGCCGATTAAAGAAGAGAAGctgctttatcacgaattctccacgttccgaagcat
                     c"
                     /listShort="yabO, yabP, yabQ, divIC, yabR"
                     /listLong="trnSL-Met1"
                     /label="promotor_-10"
     upshifts        66672
                     /Source="Nicolas_upshifts"
                     /id="U55"
                     /multdbtbs="-"
                     /comp="M10"
                     /sig="SigD"
                     /pcomp=1
                     /psig=1
                     /xcortree=2822
                     /SigmaFactorBS="tggaccgcaatgtcgctttgaacaaCTTAACAAgtgtgtata
                     ttccGCCGATTAAAGAAGAGAAGctgctttatcacgaattctccacgttccgaagcat
                     c"
                     /listShort="yabO, yabP, yabQ, divIC, yabR"
                     /listLong="trnSL-Met1"
                     /label="upshifts"
     promotor_no_box complement(67060..67160)
                     /Source="Nicolas_upshift_promotors"
                     /id="U56"
                     /multdbtbs="-"
                     /comp="M13"
                     /sig="Sig-"
                     /pcomp="0.984015984015984"
                     /psig="0.001998001998002"
                     /xcortree=37
                     /SigmaFactorBS="cgtcttcccagtcaaaaccgaccttcgctgcttttttctgca
                     atttagctgctttcgaaagagctggaagggttttcggtacgctgtctagtaatgatga
                     t"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_no_box"
     upshifts        complement(67100)
                     /Source="Nicolas_upshifts"
                     /id="U56"
                     /multdbtbs="-"
                     /comp="M13"
                     /sig="Sig-"
                     /pcomp="0.984015984015984"
                     /psig="0.001998001998002"
                     /xcortree=37
                     /SigmaFactorBS="cgtcttcccagtcaaaaccgaccttcgctgcttttttctgca
                     atttagctgctttcgaaagagctggaagggttttcggtacgctgtctagtaatgatga
                     t"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             67468..67728
                     /gene="hslR"
                     /locus_tag="BSU_00590"
                     /old_locus_tag="BSU00590"
                     /function="16.2: Construct biomass (Anabolism)"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 2a: Function from experimental evidences
                     in other organisms; PubMedId: 10675343, 10675344,
                     19013177; Product type f: factor"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosomal RNA binding protein involved in 50S
                     recycling; heat shock protein"
                     /protein_id="NP_387940.1"
                     /db_xref="EnsemblGenomes-Gn:BSU00590"
                     /db_xref="EnsemblGenomes-Tr:CAB11835"
                     /db_xref="GOA:P37557"
                     /db_xref="InterPro:IPR002942"
                     /db_xref="InterPro:IPR025490"
                     /db_xref="InterPro:IPR036986"
                     /db_xref="SubtiList:BG10122"
                     /db_xref="UniProtKB/Swiss-Prot:P37557"
                     /translation="MRLDKFLKVSRLIKRRTLAKEVADQGRISINGNQAKASSDVKPG
                     DELTVRFGQKLVTVQVNELKDTTKKEEAANMYTILKEEKLGE*"
                     /label="hslR CDS"
     gene            67468..67728
                     /gene="hslR"
                     /locus_tag="BSU_00590"
                     /old_locus_tag="BSU00590"
                     /label="hslR gene"
     promotor_-35    67733..67738
                     /Source="Nicolas_upshift_promotors"
                     /id="U57"
                     /multdbtbs="SigE"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.983016983016983"
                     /psig="0.983016983016983"
                     /xcortree=1397
                     /SigmaFactorBS="aaaaactcggcgaataggcttGTTCTAaaaaaaccccccacc
                     TCATACAATGCAGTAATAAtgctaaaagtatcgaggatatgggggctgaatagatgaa
                     t"
                     /listShort="yabP, yabQ, divIC, yabR"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    67754..67772
                     /Source="Nicolas_upshift_promotors"
                     /id="U57"
                     /multdbtbs="SigE"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.983016983016983"
                     /psig="0.983016983016983"
                     /xcortree=1397
                     /SigmaFactorBS="aaaaactcggcgaataggcttGTTCTAaaaaaaccccccacc
                     TCATACAATGCAGTAATAAtgctaaaagtatcgaggatatgggggctgaatagatgaa
                     t"
                     /listShort="yabP, yabQ, divIC, yabR"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        67772
                     /Source="Nicolas_upshifts"
                     /id="U57"
                     /multdbtbs="SigE"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.983016983016983"
                     /psig="0.983016983016983"
                     /xcortree=1397
                     /SigmaFactorBS="aaaaactcggcgaataggcttGTTCTAaaaaaaccccccacc
                     TCATACAATGCAGTAATAAtgctaaaagtatcgaggatatgggggctgaatagatgaa
                     t"
                     /listShort="yabP, yabQ, divIC, yabR"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     downshifts      complement(67804)
                     /Source="Nicolas_upshifts"
                     /id="D28"
                     /incds=0
                     /nref=3
                     /ntot=19
                     /MaxReadThrough="1.93659"
                     /MaxDrop="3.17193"
                     /score="-0.425236437"
                     /energy="-13.9"
                     /TU="NA"
                     /idTUdmin="U62"
                     /TUdmin=3014
                     /isTUend="FALSE"
                     /label="downshifts"
     CDS             67807..68109
                     /gene="spcP"
                     /locus_tag="BSU_00600"
                     /old_locus_tag="BSU00600"
                     /function="16.13: Shape"
                     /experiment="publication(s) with functional evidences,
                     PMID:10869437, 11283287, 15231775, 21904870, 22720735"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 10869437, 11283287,
                     15231775, 21904870, 22720735; Product type f: factor"
                     /codon_start=1
                     /transl_table=11
                     /product="spore protein involved in the shaping of the
                     spore coat"
                     /protein_id="NP_387941.1"
                     /db_xref="EnsemblGenomes-Gn:BSU00600"
                     /db_xref="EnsemblGenomes-Tr:CAB11836"
                     /db_xref="GOA:P37558"
                     /db_xref="InterPro:IPR012504"
                     /db_xref="InterPro:IPR022476"
                     /db_xref="SubtiList:BG10123"
                     /db_xref="UniProtKB/Swiss-Prot:P37558"
                     /translation="MNSYYDQKGSSSVPEQHDVTMKGRKHLDISGVKHVESFDNEEFL
                     LETVMGMLSVRGQNLQMKNLDVEKGIVSIKGRVFDLVYLDEQQGDKAKGFFSKLFK*"
                     /label="spcP CDS"
     gene            67807..68109
                     /gene="spcP"
                     /locus_tag="BSU_00600"
                     /old_locus_tag="BSU00600"
                     /label="spcP gene"
     CDS             68106..68741
                     /gene="spcQ"
                     /locus_tag="BSU_00610"
                     /old_locus_tag="BSU00610"
                     /function="16.13: Shape"
                     /experiment="publication(s) with functional evidences,
                     PMID:10869437, 11283287, 15849754, 16850406"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 10869437, 11283287,
                     15849754, 16850406; Product type f: factor"
                     /codon_start=1
                     /transl_table=11
                     /product="membrane protein of the forespore"
                     /protein_id="NP_387942.1"
                     /db_xref="EnsemblGenomes-Gn:BSU00610"
                     /db_xref="EnsemblGenomes-Tr:CAB11837"
                     /db_xref="GOA:P37559"
                     /db_xref="InterPro:IPR014242"
                     /db_xref="InterPro:IPR019074"
                     /db_xref="SubtiList:BG10124"
                     /db_xref="UniProtKB/Swiss-Prot:P37559"
                     /translation="MTLTTQFYTMLAMSGMGLWLGASLDTYRLFVIRAKTARWLLFIH
                     DILFWIMQGLLFFYVLLHVNEGEFRIYIFLAVLLGVATYQSLCKRIYIKILKFVIYLV
                     VSVYQFFKKLIQHVLFRPIVWTCGAIIWLAAFLFKKTYSLIGFLLLCLYKIVMVLCFP
                     IRFIAKQCLKLLPVKMRLTFRRYFEKGAGFLKKKKKLLITIRTTITRFLKR*"
                     /label="spcQ CDS"
     gene            68106..68741
                     /gene="spcQ"
                     /locus_tag="BSU_00610"
                     /old_locus_tag="BSU00610"
                     /label="spcQ gene"
     promotor_-35    68611..68620
                     /Source="Nicolas_upshift_promotors"
                     /id="U58"
                     /multdbtbs="SigW,SigX"
                     /comp="M9"
                     /sig="SigWXY"
                     /pcomp=1
                     /psig=1
                     /xcortree=1706
                     /SigmaFactorBS="tgtgttttccgatccgttttatcgcgaaacaatgttTGAAAC
                     TTCTtcctgtgaaaatGCGTCTAACTTTTAGAcgttattttgaaaaaggtgcaggatt
                     t"
                     /listShort="divIC, yabR, trnSL-Met1, trnSL-Glu1, S36"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    68633..68648
                     /Source="Nicolas_upshift_promotors"
                     /id="U58"
                     /multdbtbs="SigW,SigX"
                     /comp="M9"
                     /sig="SigWXY"
                     /pcomp=1
                     /psig=1
                     /xcortree=1706
                     /SigmaFactorBS="tgtgttttccgatccgttttatcgcgaaacaatgttTGAAAC
                     TTCTtcctgtgaaaatGCGTCTAACTTTTAGAcgttattttgaaaaaggtgcaggatt
                     t"
                     /listShort="divIC, yabR, trnSL-Met1, trnSL-Glu1, S36"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        68635
                     /Source="Nicolas_upshifts"
                     /id="U58"
                     /multdbtbs="SigW,SigX"
                     /comp="M9"
                     /sig="SigWXY"
                     /pcomp=1
                     /psig=1
                     /xcortree=1706
                     /SigmaFactorBS="tgtgttttccgatccgttttatcgcgaaacaatgttTGAAAC
                     TTCTtcctgtgaaaatGCGTCTAACTTTTAGAcgttattttgaaaaaggtgcaggatt
                     t"
                     /listShort="divIC, yabR, trnSL-Met1, trnSL-Glu1, S36"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    68667..68675
                     /Source="Nicolas_upshift_promotors"
                     /id="U59"
                     /multdbtbs="-"
                     /comp="M1"
                     /sig="SigH"
                     /pcomp=1
                     /psig=1
                     /xcortree=532
                     /SigmaFactorBS="tctaacttttagacgttattttgaaaaaggtGCAGGATTTct
                     caaaaagaAGAAGAAACTATTGATAACcataagaacgaccatcacacggtttttgaag
                     a"
                     /listShort="divIC, yabR"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    68686..68704
                     /Source="Nicolas_upshift_promotors"
                     /id="U59"
                     /multdbtbs="-"
                     /comp="M1"
                     /sig="SigH"
                     /pcomp=1
                     /psig=1
                     /xcortree=532
                     /SigmaFactorBS="tctaacttttagacgttattttgaaaaaggtGCAGGATTTct
                     caaaaagaAGAAGAAACTATTGATAACcataagaacgaccatcacacggtttttgaag
                     a"
                     /listShort="divIC, yabR"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        68696
                     /Source="Nicolas_upshifts"
                     /id="U59"
                     /multdbtbs="-"
                     /comp="M1"
                     /sig="SigH"
                     /pcomp=1
                     /psig=1
                     /xcortree=532
                     /SigmaFactorBS="tctaacttttagacgttattttgaaaaaggtGCAGGATTTct
                     caaaaagaAGAAGAAACTATTGATAACcataagaacgaccatcacacggtttttgaag
                     a"
                     /listShort="divIC, yabR"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             68759..69136
                     /gene="divIC"
                     /locus_tag="BSU_00620"
                     /old_locus_tag="BSU00620"
                     /function="16.13: Shape"
                     /function="16.9: Replicate"
                     /experiment="publication(s) with functional evidences,
                     PMID:10844672, 11283287, 11994149, 12682299, 16936019,
                     20870765, 22720735"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 10844672, 11283287,
                     11994149, 12682299, 16936019, 20870765, 22720735; Product
                     type f: factor"
                     /codon_start=1
                     /transl_table=11
                     /product="cell-division initiation protein"
                     /protein_id="NP_387943.1"
                     /db_xref="EnsemblGenomes-Gn:BSU00620"
                     /db_xref="EnsemblGenomes-Tr:CAB11838"
                     /db_xref="GOA:P37471"
                     /db_xref="InterPro:IPR007060"
                     /db_xref="SubtiList:BG10125"
                     /db_xref="UniProtKB/Swiss-Prot:P37471"
                     /translation="MNFSRERTITEIQNDYKEQVERQNQLKKRRRKGLYRRLTVFGAL
                     VFLTAIVLASSVWSQTSSLSAKEEKKEQLEKELKSLKTKQTDLKEEISKLKDEDYVTE
                     LARRDLFMSGDGEIIFNVEKKSK*"
                     /label="divIC CDS"
     gene            68759..69136
                     /gene="divIC"
                     /locus_tag="BSU_00620"
                     /old_locus_tag="BSU00620"
                     /label="divIC gene"
     CDS             69217..69603
                     /gene="yabR"
                     /locus_tag="BSU_00630"
                     /old_locus_tag="BSU00630"
                     /EC_number="2.7.-.-"
                     /function="16.11: Scavenge (Catabolism)"
                     /function="16.6: Maintain"
                     /function="16.3: Control"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 9862121, 15066026,
                     16014871, 22720735; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative RNA degradation protein;
                     polyribonucleotide nucleotidyltransferase or
                     phosphorylase"
                     /protein_id="NP_387944.1"
                     /db_xref="EnsemblGenomes-Gn:BSU00630"
                     /db_xref="EnsemblGenomes-Tr:CAB11839"
                     /db_xref="GOA:P37560"
                     /db_xref="InterPro:IPR003029"
                     /db_xref="InterPro:IPR012340"
                     /db_xref="InterPro:IPR022967"
                     /db_xref="SubtiList:BG10126"
                     /db_xref="UniProtKB/Swiss-Prot:P37560"
                     /translation="MSIEVGSKLQGKITGITNFGAFVELPGGSTGLVHISEVADNYVK
                     DINDHLKVGDQVEVKVINVEKDGKIGLSIKKAKDRPQARPRNDFRPKESFEQKMNKFL
                     KDSEDRLSSLKRNTESKRGGRGARRG*"
                     /label="yabR CDS"
     gene            69217..69603
                     /gene="yabR"
                     /locus_tag="BSU_00630"
                     /old_locus_tag="BSU00630"
                     /label="yabR gene"
     downshifts      69597
                     /Source="Nicolas_upshifts"
                     /id="D29"
                     /incds=0
                     /nref=247
                     /ntot=274
                     /MaxReadThrough="3.67278"
                     /MaxDrop="8.3221"
                     /score="23.2738869"
                     /energy="-12.5"
                     /TU="U58"
                     /idTUdmin="U53"
                     /TUdmin="-1"
                     /isTUend="TRUE"
                     /label="downshifts"
     promotor_-35    69711..69718
                     /Source="Nicolas_upshift_promotors"
                     /id="U60"
                     /multdbtbs="-"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp="0.85914085914086"
                     /psig=1
                     /xcortree=2412
                     /SigmaFactorBS="gaaaattacaacattaaagtttctGTTGACGAaagagacaaa
                     cctTTGTATTATATAACTTGTGCttagaagcacaaaacaatatggcggtgtagctcag
                     c"
                     /listShort="trnSL-Met1, trnSL-Glu1, S36, spoIIE, yabS,
                     yabT"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    69732..69751
                     /Source="Nicolas_upshift_promotors"
                     /id="U60"
                     /multdbtbs="-"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp="0.85914085914086"
                     /psig=1
                     /xcortree=2412
                     /SigmaFactorBS="gaaaattacaacattaaagtttctGTTGACGAaagagacaaa
                     cctTTGTATTATATAACTTGTGCttagaagcacaaaacaatatggcggtgtagctcag
                     c"
                     /listShort="trnSL-Met1, trnSL-Glu1, S36, spoIIE, yabS,
                     yabT"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        69747
                     /Source="Nicolas_upshifts"
                     /id="U60"
                     /multdbtbs="-"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp="0.85914085914086"
                     /psig=1
                     /xcortree=2412
                     /SigmaFactorBS="gaaaattacaacattaaagtttctGTTGACGAaagagacaaa
                     cctTTGTATTATATAACTTGTGCttagaagcacaaaacaatatggcggtgtagctcag
                     c"
                     /listShort="trnSL-Met1, trnSL-Glu1, S36, spoIIE, yabS,
                     yabT"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     tRNA            69772..69848
                     /gene="trnSL-Met1"
                     /locus_tag="BSU_tRNA_10"
                     /product="tRNA-Met"
                     /inference="profile:tRNAscan:1.23"
                     /note="methionine transfer RNA (CAU); Evidence 2a:
                     Function from experimental evidences in other organisms;
                     Product type n: RNA"
                     /function="16.2: Construct biomass (Anabolism)"
                     /label="trnSL-Met1 tRNA"
     gene            69772..69848
                     /gene="trnSL-Met1"
                     /locus_tag="BSU_tRNA_10"
                     /label="trnSL-Met1 gene"
     tRNA            69858..69929
                     /gene="trnSL-Glu1"
                     /locus_tag="BSU_tRNA_11"
                     /product="tRNA-Glu"
                     /inference="profile:tRNAscan:1.23"
                     /note="glutamate transfer RNA (UUC); Evidence 2a:
                     Functionfrom experimental evidences in other organisms;
                     Producttype n: RNA"
                     /function="16.2: Construct biomass (Anabolism)"
                     /label="trnSL-Glu1 tRNA"
     gene            69858..69929
                     /gene="trnSL-Glu1"
                     /locus_tag="BSU_tRNA_11"
                     /label="trnSL-Glu1 gene"
     downshifts      69928
                     /Source="Nicolas_upshifts"
                     /id="D30"
                     /incds=0
                     /nref=2
                     /ntot=58
                     /MaxReadThrough="4.83761"
                     /MaxDrop="5.55326"
                     /score="25.2769629"
                     /energy="-10.8"
                     /TU="U58,U60"
                     /idTUdmin="U58"
                     /TUdmin="-198"
                     /isTUend="FALSE"
                     /label="downshifts"
     S_feature       69973..70084
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_70382_70493"
                     /HighExp="Cold, G180, C30, G135, G150, Oxctl, Paraq, H2O2,
                     Heat, BMM"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA, SigWXY"
                     /TUshortPSig="1, 1"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S36"
     misc_feature    70080..70099
                     /Source="Nicolas_upshift_promotors"
                     /id="U61"
                     /multdbtbs="SigA"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.632367632367632"
                     /psig="0.99000999000999"
                     /xcortree=442
                     /SigmaFactorBS="cgtcgaagatttctttggtattgttaccttcttttgacaaaa
                     tcctatctgtgcTTTCGCTATAATGACAGGCAacgaatataacaggtgggagatgaga
                     g"
                     /listShort="spoIIE, yabS, yabT, tilS"
                     /listLong="hprT, S38, ftsH"
                     /label="promotor_single_box"
                     /note="Geneious type: promotor_single_box"
     upshifts        70086
                     /Source="Nicolas_upshifts"
                     /id="U61"
                     /multdbtbs="SigA"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.632367632367632"
                     /psig="0.99000999000999"
                     /xcortree=442
                     /SigmaFactorBS="cgtcgaagatttctttggtattgttaccttcttttgacaaaa
                     tcctatctgtgcTTTCGCTATAATGACAGGCAacgaatataacaggtgggagatgaga
                     g"
                     /listShort="spoIIE, yabS, yabT, tilS"
                     /listLong="hprT, S38, ftsH"
                     /label="upshifts"
     CDS             70129..72612
                     /gene="spoIIE"
                     /locus_tag="BSU_00640"
                     /old_locus_tag="BSU00640"
                     /EC_number="3.1.3.16"
                     /function="16.3: Control"
                     /function="16.13: Shape"
                     /experiment="publication(s) with functional evidences,
                     PMID:10747015, 12180929, 15126482, 15866939, 15978076,
                     28358838"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 10747015, 12180929,
                     15126482, 15866939, 15978076, 28358838; Product type e :
                     enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="SpoIIAA-phosphate serine phosphatase"
                     /protein_id="NP_387945.1"
                     /db_xref="EnsemblGenomes-Gn:BSU00640"
                     /db_xref="EnsemblGenomes-Tr:CAB11840"
                     /db_xref="GOA:P37475"
                     /db_xref="InterPro:IPR001932"
                     /db_xref="InterPro:IPR014221"
                     /db_xref="InterPro:IPR036457"
                     /db_xref="PDB:3T91"
                     /db_xref="PDB:3T9Q"
                     /db_xref="PDB:5UCG"
                     /db_xref="SubtiList:BG10127"
                     /db_xref="UniProtKB/Swiss-Prot:P37475"
                     /translation="MEKAERRVNGPMAGQALEKLQSFFNRGTKLVTHHLHSLFFYKGF
                     IYVVIGFLLGRAFILSEVLPFALPFFGAMLLIRRDKAFYAVLAVLAGALTISPKHSLL
                     ILAALLAFFVFSKVAAFITDDRVKALPIVVFFSMAAARAGFVYAQNGVFTTYDYVMAI
                     VEAGLSFILTLIFLQSLPIFTVKKVKQSLKIEEIICFMILIASVLTGLAGLSYQGMQA
                     EHILARYVVLSFSFIGGASIGCTVGVVTGLILGLANIGNLYQMSLLAFSGLLGGLLKE
                     GKKAGAAIGLIVGSLLISLYGEGSAGLMTTLYESLIAVCLFLLTPQSITRKVARYIPG
                     TVEHLQEQQQYARKIRDVTAQKVDQFSNVFHALSESFATFYQASDEQTDDSEVDLFLS
                     KITEHSCQTCYKKNRCWVQNFDKTYDLMKQVMLETEEKEYASNRRLKKEFQQYCSKSK
                     QVEELIEDELAHHHAHLTLKKKVQDSRRLVAEQLLGVSEVMADFSREIKREREQHFLQ
                     EEQIIEALQHFGIEIQHVEIYSLEQGNIDIEMTIPFSGHGESEKIIAPMLSDILEEQI
                     LVKAEQHSPHPNGYSHVAFGSTKSYRVSTGAAHAAKGGGLVSGDSYSMMELGARKYAA
                     AISDGMGNGARAHFESNETIKLLEKILESGIDEKIAIKTINSILSLRTTDEIYSTLDL
                     SIIDLQDASCKFLKVGSTPSFIKRGDQVMKVQASNLPIGIINEFDVEVVSEQLKAGDL
                     LIMMSDGIFEGPKHVENHDLWMKRKMKGLKTNDPQEIADLLMEEVIRTRSGQIEDDMT
                     VVVVRIDHNTPKWASIPVPAIFQNKQEIS*"
                     /label="spoIIE CDS"
     gene            70129..72612
                     /gene="spoIIE"
                     /locus_tag="BSU_00640"
                     /old_locus_tag="BSU00640"
                     /label="spoIIE gene"
     downshifts      70170
                     /Source="Nicolas_upshifts"
                     /id="D31"
                     /incds=0
                     /nref=1
                     /ntot=20
                     /MaxReadThrough="5.5737"
                     /MaxDrop="3.93473"
                     /score="25.2769629"
                     /energy="-10.8"
                     /TU="U60,U61"
                     /idTUdmin="U58"
                     /TUdmin=44
                     /isTUend="FALSE"
                     /label="downshifts"
     S_feature       complement(70781..71390)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_71190_71799_c"
                     /HighExp="S8, S6, S4, S5, S3, S7, M9-stat, T5.0H, LoTm,
                     Pyr"
                     /AntisenseName="spoIIE"
                     /AntisenseCor="0.685558251745638"
                     /AntisenseRegPval="-38"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigEF"
                     /TUshortPSig=1
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S37"
     downshifts      complement(70807)
                     /Source="Nicolas_upshifts"
                     /id="D32"
                     /incds=1
                     /nref=2
                     /ntot=11
                     /MaxReadThrough="2.2425"
                     /MaxDrop="4.29972"
                     /score="-0.425236437"
                     /energy="-13.9"
                     /TU="NA"
                     /idTUdmin="U62"
                     /TUdmin=11
                     /isTUend="TRUE"
                     /label="downshifts"
     promotor_-10    complement(71363..71381)
                     /Source="Nicolas_upshift_promotors"
                     /id="U62"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp=1
                     /psig=1
                     /xcortree=1071
                     /SigmaFactorBS="cttttttcagccttcggtttgatgcatattctttttcctctg
                     tttcaAGCATAacttgtttcattaagTCATATGTTTTATCAAAGTtctgtacccagca
                     c"
                     /listShort="S37"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(71389)
                     /Source="Nicolas_upshifts"
                     /id="U62"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp=1
                     /psig=1
                     /xcortree=1071
                     /SigmaFactorBS="cttttttcagccttcggtttgatgcatattctttttcctctg
                     tttcaAGCATAacttgtttcattaagTCATATGTTTTATCAAAGTtctgtacccagca
                     c"
                     /listShort="S37"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(71397..71402)
                     /Source="Nicolas_upshift_promotors"
                     /id="U62"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp=1
                     /psig=1
                     /xcortree=1071
                     /SigmaFactorBS="cttttttcagccttcggtttgatgcatattctttttcctctg
                     tttcaAGCATAacttgtttcattaagTCATATGTTTTATCAAAGTtctgtacccagca
                     c"
                     /listShort="S37"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-35    71594..71600
                     /Source="Nicolas_upshift_promotors"
                     /id="U63"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp=1
                     /psig=1
                     /xcortree=158
                     /SigmaFactorBS="ccttgttgctgaacagcttttaggcgtttctgAGGTTATggc
                     cgacttttctcGGGAAATAAAAAGAGAGCGagaacaacactttctgcaggaagagcaa
                     a"
                     /listShort="yabS"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    71615..71633
                     /Source="Nicolas_upshift_promotors"
                     /id="U63"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp=1
                     /psig=1
                     /xcortree=158
                     /SigmaFactorBS="ccttgttgctgaacagcttttaggcgtttctgAGGTTATggc
                     cgacttttctcGGGAAATAAAAAGAGAGCGagaacaacactttctgcaggaagagcaa
                     a"
                     /listShort="yabS"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        71622
                     /Source="Nicolas_upshifts"
                     /id="U63"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp=1
                     /psig=1
                     /xcortree=158
                     /SigmaFactorBS="ccttgttgctgaacagcttttaggcgtttctgAGGTTATggc
                     cgacttttctcGGGAAATAAAAAGAGAGCGagaacaacactttctgcaggaagagcaa
                     a"
                     /listShort="yabS"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    72632..72635
                     /Source="Nicolas_upshift_promotors"
                     /id="U64"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.842157842157842"
                     /psig="0.842157842157842"
                     /xcortree=1198
                     /SigmaFactorBS="aacaagaaatttcataacgcttccgtataaatcaaaTTTCtt
                     ctggcgaagatgggaATATATGAATCTGAGAATcctcgtattctccaggaggaatgaa
                     t"
                     /listShort="yabS, yabT, tilS, hprT, S38, ftsH"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    72653..72670
                     /Source="Nicolas_upshift_promotors"
                     /id="U64"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.842157842157842"
                     /psig="0.842157842157842"
                     /xcortree=1198
                     /SigmaFactorBS="aacaagaaatttcataacgcttccgtataaatcaaaTTTCtt
                     ctggcgaagatgggaATATATGAATCTGAGAATcctcgtattctccaggaggaatgaa
                     t"
                     /listShort="yabS, yabT, tilS, hprT, S38, ftsH"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        72656
                     /Source="Nicolas_upshifts"
                     /id="U64"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.842157842157842"
                     /psig="0.842157842157842"
                     /xcortree=1198
                     /SigmaFactorBS="aacaagaaatttcataacgcttccgtataaatcaaaTTTCtt
                     ctggcgaagatgggaATATATGAATCTGAGAATcctcgtattctccaggaggaatgaa
                     t"
                     /listShort="yabS, yabT, tilS, hprT, S38, ftsH"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             72697..73434
                     /gene="yabS"
                     /locus_tag="BSU_00650"
                     /old_locus_tag="BSU00650"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved protein of unknown function"
                     /protein_id="NP_387946.1"
                     /db_xref="EnsemblGenomes-Gn:BSU00650"
                     /db_xref="EnsemblGenomes-Tr:CAB11841"
                     /db_xref="InterPro:IPR002035"
                     /db_xref="InterPro:IPR036465"
                     /db_xref="SubtiList:BG10128"
                     /db_xref="UniProtKB/Swiss-Prot:P37561"
                     /translation="MNNGHLNQILLITDGCSNHGEDPLAMAAFAKEQGITVNVIGIME
                     ENQIDPEAMKEVEGIALAGGGVHQVVYASQLSQTVQMVTKKAMTQTLQGVVNQELKQI
                     LGKNVEMEELSPEKRGEVMEVVDELGETVHLQVLVLVDTSASMAPKLPTVKEALIDLS
                     VSLNSRIGNNEFAMCIFPGKKQEVELVLNWTPKLQSLSTLFAKLSTGGITPTGPAIRE
                     ATLQFEKIRSRRGMLADDERRFDEFGM*"
                     /label="yabS CDS"
     gene            72697..73434
                     /gene="yabS"
                     /locus_tag="BSU_00650"
                     /old_locus_tag="BSU00650"
                     /label="yabS gene"
     CDS             73400..74416
                     /gene="prkT"
                     /locus_tag="BSU_00660"
                     /old_locus_tag="BSU00660"
                     /EC_number="2.7.11.1"
                     /function="16.3: Control"
                     /experiment="publication(s) with functional evidences,
                     PMID:23634894, 24731262, 25278935"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 23634894, 24731262,
                     25278935; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="serine/threonine-protein kinase"
                     /protein_id="NP_387947.2"
                     /db_xref="EnsemblGenomes-Gn:BSU00660"
                     /db_xref="EnsemblGenomes-Tr:CAB11842"
                     /db_xref="GOA:P37562"
                     /db_xref="InterPro:IPR000719"
                     /db_xref="InterPro:IPR011009"
                     /db_xref="InterPro:IPR017441"
                     /db_xref="SubtiList:BG10129"
                     /db_xref="UniProtKB/Swiss-Prot:P37562"
                     /translation="MMNDALTSLACSLKPGTTIKGKWNGNTYTLRKQLGKGANGIVYL
                     AETSDGHVALKVSDDSLSITSEVNVLKSFSKAQSVTMGPSFFDTDDAYIPSANTKVSF
                     YAMEYIKGPLLLKYVSDKGAEWIPVLMIQLLSSLSVLHQQGWIFGDLKPDNLIVTGPP
                     ARIRCIDVGGTTKEGRAIKEYTEFYDRGYWGYGTRKAEPSYDLFAVAMIMINSVHKKE
                     FKKTNQPKEQLRSLIEGNPLLQKYKKALFSALNGDYQSADEMKKDMLDAGQKAAQRKQ
                     PIKASPQPATRQRQQKPRQGKITKTRYTPKQKPAKSGGLFETTLIVISVLALYFAYII
                     FFLI*"
                     /label="prkT CDS"
     gene            73400..74416
                     /gene="prkT"
                     /locus_tag="BSU_00660"
                     /old_locus_tag="BSU00660"
                     /label="prkT gene"
     promotor_-35    73948..73954
                     /Source="Nicolas_upshift_promotors"
                     /id="U65"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp=1
                     /psig=1
                     /xcortree=159
                     /SigmaFactorBS="aaggaaggccgggcgataaaagagtatacggaGTTTTATgac
                     agaggctattggGGGTATGGAACAAGAAAGGcagagccatcctatgatctgttcgcag
                     t"
                     /GFF_Attribute="listShort"
                     /listLong="tilS, hprT, S38, ftsH"
                     /label="promotor_-35"
     promotor_-10    73970..73988
                     /Source="Nicolas_upshift_promotors"
                     /id="U65"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp=1
                     /psig=1
                     /xcortree=159
                     /SigmaFactorBS="aaggaaggccgggcgataaaagagtatacggaGTTTTATgac
                     agaggctattggGGGTATGGAACAAGAAAGGcagagccatcctatgatctgttcgcag
                     t"
                     /GFF_Attribute="listShort"
                     /listLong="tilS, hprT, S38, ftsH"
                     /label="promotor_-10"
     upshifts        73976
                     /Source="Nicolas_upshifts"
                     /id="U65"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp=1
                     /psig=1
                     /xcortree=159
                     /SigmaFactorBS="aaggaaggccgggcgataaaagagtatacggaGTTTTATgac
                     agaggctattggGGGTATGGAACAAGAAAGGcagagccatcctatgatctgttcgcag
                     t"
                     /GFF_Attribute="listShort"
                     /listLong="tilS, hprT, S38, ftsH"
                     /label="upshifts"
     promotor_-35    74446..74453
                     /Source="Nicolas_upshift_promotors"
                     /id="U66"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.723276723276723"
                     /psig=1
                     /xcortree=1948
                     /SigmaFactorBS="atggtgcaaactgcagagcctatgcttctTCTTTGCTtggag
                     gggttgaaAGTGTTAGGATATGAATATCtttaaaatacctgctcattgtgaggaggac
                     a"
                     /listShort="tilS, hprT, S38, ftsH, S39, S40, coaX, hslO,
                     yacD"
                     /listLong="cysK, pabB, pabA, pabC, sul, folB, folK, yazB,
                     dusB, S42, lysS, S43, rrnJ-16S"
                     /label="promotor_-35"
     promotor_-10    74467..74486
                     /Source="Nicolas_upshift_promotors"
                     /id="U66"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.723276723276723"
                     /psig=1
                     /xcortree=1948
                     /SigmaFactorBS="atggtgcaaactgcagagcctatgcttctTCTTTGCTtggag
                     gggttgaaAGTGTTAGGATATGAATATCtttaaaatacctgctcattgtgaggaggac
                     a"
                     /listShort="tilS, hprT, S38, ftsH, S39, S40, coaX, hslO,
                     yacD"
                     /listLong="cysK, pabB, pabA, pabC, sul, folB, folK, yazB,
                     dusB, S42, lysS, S43, rrnJ-16S"
                     /label="promotor_-10"
     upshifts        74477
                     /Source="Nicolas_upshifts"
                     /id="U66"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.723276723276723"
                     /psig=1
                     /xcortree=1948
                     /SigmaFactorBS="atggtgcaaactgcagagcctatgcttctTCTTTGCTtggag
                     gggttgaaAGTGTTAGGATATGAATATCtttaaaatacctgctcattgtgaggaggac
                     a"
                     /listShort="tilS, hprT, S38, ftsH, S39, S40, coaX, hslO,
                     yacD"
                     /listLong="cysK, pabB, pabA, pabC, sul, folB, folK, yazB,
                     dusB, S42, lysS, S43, rrnJ-16S"
                     /label="upshifts"
     CDS             74520..75938
                     /gene="tilS"
                     /locus_tag="BSU_00670"
                     /old_locus_tag="BSU00670"
                     /EC_number="6.3.4.19"
                     /function="16.2: Construct biomass (Anabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:12682299, 14527414, 16039592, 17005971, 22720735,
                     24001521"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 12682299, 14527414,
                     16039592, 17005971, 22720735, 24001521; Product type e :
                     enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA(ile2) lysidine synthetase"
                     /protein_id="NP_387948.1"
                     /db_xref="EnsemblGenomes-Gn:BSU00670"
                     /db_xref="EnsemblGenomes-Tr:CAB11843"
                     /db_xref="GOA:P37563"
                     /db_xref="InterPro:IPR011063"
                     /db_xref="InterPro:IPR012094"
                     /db_xref="InterPro:IPR012795"
                     /db_xref="InterPro:IPR012796"
                     /db_xref="InterPro:IPR014729"
                     /db_xref="InterPro:IPR015262"
                     /db_xref="InterPro:IPR020825"
                     /db_xref="SubtiList:BG10130"
                     /db_xref="UniProtKB/Swiss-Prot:P37563"
                     /translation="MKSVKDFLNKHNLTLKGATIIVGVSGGPDSMALLHALHTLCGRS
                     ANVIAAHVDHRFRGAESEEDMRFVQAYCKAEQLVCETAQINVTAYAQEKGLNKQAAAR
                     DCRYQFFEEIMSKHQADYLALAHHGDDQVETMLMKLAKGTLGTGLAGMQPVRRFGTGR
                     IIRPFLTITKEEILHYCHENGLSYRTDESNAKDDYTRNRFRKTVLPFLKQESPDVHKR
                     FQKVSEALTEDEQFLQSLTKDEMNKVITSQSNTSVEINSSQLLALPMPLQRRGVQLIL
                     NYLYENVPSSFSAHHIQQFLDWAENGGPSGVLDFPKGLKVVKSYQTCLFTFEQWQCKN
                     VPFEYQISGAADETAVLPNGYLIEARHYADSPEEHGNAVFITSEKKVRFPLTIRTRKA
                     GDRIKLKGMNGSKKVKDIFIDKKLPLQERDNWPIVTDASGEIIWIPGLKKSIFEDLVI
                     PNSDRIVLQYRQHEKCRGQAKS*"
                     /label="tilS CDS"
     gene            74520..75938
                     /gene="tilS"
                     /locus_tag="BSU_00670"
                     /old_locus_tag="BSU00670"
                     /label="tilS gene"
     promotor_-35    75315..75322
                     /Source="Nicolas_upshift_promotors"
                     /id="U67"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.721278721278721"
                     /psig="0.999000999001"
                     /xcortree=1885
                     /SigmaFactorBS="aaatcaattcctctcaattgcttgccctcccgatgCCTTTAC
                     AaagaagaggagttcAACTAATATTAAACTATCTTtatgaaaacgttccatcatcctt
                     t"
                     /listShort="hprT, S38, ftsH, S39, S40, coaX, hslO, yacD"
                     /listLong="cysK, pabB, pabA, pabC, sul, folB, folK, yazB,
                     dusB, S42, lysS, S43, rrnJ-16S"
                     /label="promotor_-35"
     promotor_-10    75337..75356
                     /Source="Nicolas_upshift_promotors"
                     /id="U67"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.721278721278721"
                     /psig="0.999000999001"
                     /xcortree=1885
                     /SigmaFactorBS="aaatcaattcctctcaattgcttgccctcccgatgCCTTTAC
                     AaagaagaggagttcAACTAATATTAAACTATCTTtatgaaaacgttccatcatcctt
                     t"
                     /listShort="hprT, S38, ftsH, S39, S40, coaX, hslO, yacD"
                     /listLong="cysK, pabB, pabA, pabC, sul, folB, folK, yazB,
                     dusB, S42, lysS, S43, rrnJ-16S"
                     /label="promotor_-10"
     upshifts        75340
                     /Source="Nicolas_upshifts"
                     /id="U67"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.721278721278721"
                     /psig="0.999000999001"
                     /xcortree=1885
                     /SigmaFactorBS="aaatcaattcctctcaattgcttgccctcccgatgCCTTTAC
                     AaagaagaggagttcAACTAATATTAAACTATCTTtatgaaaacgttccatcatcctt
                     t"
                     /listShort="hprT, S38, ftsH, S39, S40, coaX, hslO, yacD"
                     /listLong="cysK, pabB, pabA, pabC, sul, folB, folK, yazB,
                     dusB, S42, lysS, S43, rrnJ-16S"
                     /label="upshifts"
     downshifts      complement(75933)
                     /Source="Nicolas_upshifts"
                     /id="D33"
                     /incds=0
                     /nref=2
                     /ntot=142
                     /MaxReadThrough="2.51342"
                     /MaxDrop="2.96272"
                     /score="12.3455896"
                     /energy="-9.1"
                     /TU="NA"
                     /idTUdmin="U68"
                     /TUdmin="-11"
                     /isTUend="TRUE"
                     /label="downshifts"
     CDS             75935..76477
                     /gene="hprT"
                     /locus_tag="BSU_00680"
                     /old_locus_tag="BSU00680"
                     /EC_number="2.4.2.8"
                     /function="16.11: Scavenge (Catabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:3110131, 6408059, 24001521"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 3110131, 6408059,
                     24001521; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="hypoxanthine-guanine phosphoribosyltransferase"
                     /protein_id="NP_387949.1"
                     /db_xref="EnsemblGenomes-Gn:BSU00680"
                     /db_xref="EnsemblGenomes-Tr:CAB11844"
                     /db_xref="GOA:P37472"
                     /db_xref="InterPro:IPR000836"
                     /db_xref="InterPro:IPR005904"
                     /db_xref="InterPro:IPR029057"
                     /db_xref="SubtiList:BG10131"
                     /db_xref="UniProtKB/Swiss-Prot:P37472"
                     /translation="MMKHDIEKVLISEEEIQKKVKELGAELTSEYQDTFPLAIGVLKG
                     ALPFMADLIKHIDTYLEMDFMDVSSYGNSTVSSGEVKIIKDLDTSVEGRDILIIEDII
                     DSGLTLSYLVELFRYRKAKSIKIVTLLDKPSGRKADIKADFVGFEVPDAFVVGYGLDY
                     AERYRNLPYIGVLKPAVYES*"
                     /label="hprT CDS"
     gene            75935..76477
                     /gene="hprT"
                     /locus_tag="BSU_00680"
                     /old_locus_tag="BSU00680"
                     /label="hprT gene"
     upshifts        complement(76340)
                     /Source="Nicolas_upshifts"
                     /id="U68"
                     /multdbtbs="-"
                     /comp="M13"
                     /sig="Sig-"
                     /pcomp="0.988011988011988"
                     /psig="0.002997002997003"
                     /xcortree=41
                     /SigmaFactorBS="aacccactacaaacgcgtcaggaacttcaaaacCGACaaagt
                     ctgctttgatgtCCGCTtttcttccgctcggtttatccaaaagggtaacaatcttaat
                     t"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-10    complement(76342..76346)
                     /Source="Nicolas_upshift_promotors"
                     /id="U68"
                     /multdbtbs="-"
                     /comp="M13"
                     /sig="Sig-"
                     /pcomp="0.988011988011988"
                     /psig="0.002997002997003"
                     /xcortree=41
                     /SigmaFactorBS="aacccactacaaacgcgtcaggaacttcaaaacCGACaaagt
                     ctgctttgatgtCCGCTtttcttccgctcggtttatccaaaagggtaacaatcttaat
                     t"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     promotor_-35    complement(76364..76367)
                     /Source="Nicolas_upshift_promotors"
                     /id="U68"
                     /multdbtbs="-"
                     /comp="M13"
                     /sig="Sig-"
                     /pcomp="0.988011988011988"
                     /psig="0.002997002997003"
                     /xcortree=41
                     /SigmaFactorBS="aacccactacaaacgcgtcaggaacttcaaaacCGACaaagt
                     ctgctttgatgtCCGCTtttcttccgctcggtttatccaaaagggtaacaatcttaat
                     t"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     S_feature       76478..76574
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_76887_76983"
                     /HighExp="Diami, H2O2, dia5, G135, dia15, G150, Paraq,
                     C90, G180, Salt"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA, SigA, SigEF"
                     /TUshortPSig="0.999, 1, 0.842"
                     /TUlongSig="SigB, SigA"
                     /TUlongPSig="1, 0.99"
                     /label="S38"
     CDS             76575..78488
                     /gene="ftsH"
                     /locus_tag="BSU_00690"
                     /old_locus_tag="BSU00690"
                     /EC_number="3.4.24.-"
                     /function="16.9: Replicate"
                     /function="16.13: Shape"
                     /experiment="publication(s) with functional evidences,
                     PMID:9076729, 9084181, 9287010, 9352926, 10851010,
                     10913836, 12533473, 24001521, 22720735"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 9076729, 9084181,
                     9287010, 9352926, 10851010, 10913836, 12533473, 24001521,
                     22720735; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent cytoplasmic membrane protease"
                     /protein_id="NP_387950.1"
                     /db_xref="EnsemblGenomes-Gn:BSU00690"
                     /db_xref="EnsemblGenomes-Tr:CAB11845"
                     /db_xref="GOA:P37476"
                     /db_xref="InterPro:IPR000642"
                     /db_xref="InterPro:IPR003593"
                     /db_xref="InterPro:IPR003959"
                     /db_xref="InterPro:IPR003960"
                     /db_xref="InterPro:IPR005936"
                     /db_xref="InterPro:IPR011546"
                     /db_xref="InterPro:IPR027417"
                     /db_xref="InterPro:IPR037219"
                     /db_xref="SubtiList:BG10132"
                     /db_xref="UniProtKB/Swiss-Prot:P37476"
                     /translation="MNRVFRNTIFYLLILLVVIGVVSYFQTSNPKTENMSYSTFIKNL
                     DDGKVDSVSVQPVRGVYEVKGQLKNYDKDQYFLTHVPEGKGADQIFNALKKTDVKVEP
                     AQETSGWVTFLTTIIPFVIIFILFFFLLNQAQGGGSRVMNFGKSKAKLYTEEKKRVKF
                     KDVAGADEEKQELVEVVEFLKDPRKFAELGARIPKGVLLVGPPGTGKTLLAKACAGEA
                     GVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCLIFIDEIDAVGRQRGAGLGGG
                     HDEREQTLNQLLVEMDGFSANEGIIIIAATNRADILDPALLRPGRFDRQITVDRPDVI
                     GREAVLKVHARNKPLDETVNLKSIAMRTPGFSGADLENLLNEAALVAARQNKKKIDAR
                     DIDEATDRVIAGPAKKSRVISKKERNIVAYHEGGHTVIGLVLDEADMVHKVTIVPRGQ
                     AGGYAVMLPREDRYFQTKPELLDKIVGLLGGRVAEEIIFGEVSTGAHNDFQRATNIAR
                     RMVTEFGMSEKLGPLQFGQSQGGQVFLGRDFNNEQNYSDQIAYEIDQEIQRIIKECYE
                     RAKQILTENRDKLELIAQTLLKVETLDAEQIKHLIDHGTLPERNFSDDEKNDDVKVNI
                     LTKTEEKKDDTKE*"
                     /label="ftsH CDS"
     gene            76575..78488
                     /gene="ftsH"
                     /locus_tag="BSU_00690"
                     /old_locus_tag="BSU00690"
                     /label="ftsH gene"
     downshifts      78486
                     /Source="Nicolas_upshifts"
                     /id="D34"
                     /incds=0
                     /nref=187
                     /ntot=269
                     /MaxReadThrough="5.00908"
                     /MaxDrop="8.91482"
                     /score="38.4132386"
                     /energy="-12.9"
                     /TU="U66,U67"
                     /idTUdmin="U64"
                     /TUdmin=0
                     /isTUend="TRUE"
                     /label="downshifts"
     misc_feature    complement(78525..78529)
                     /Source="Nicolas_upshift_promotors"
                     /id="U69"
                     /multdbtbs="-"
                     /comp="M13"
                     /sig="Sig-"
                     /pcomp="0.955044955044955"
                     /psig="0.000999000999001"
                     /xcortree=66
                     /SigmaFactorBS="aaatcgataccagaattggatgattgtaaaagccgcagctga
                     gccaatcatttacataaaaaaaCTGCCagcgtcagccggcagtttttttagaaagaaa
                     g"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_single_box"
                     /note="Geneious type: promotor_single_box"
     S_feature       78531..78616
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_78940_79025"
                     /HighExp="H2O2, G180, G135, dia15, Paraq, G150, Oxctl,
                     Diami, Cold, LBGexp"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA, SigA"
                     /TUshortPSig="0.999, 1"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S39"
     upshifts        complement(78533)
                     /Source="Nicolas_upshifts"
                     /id="U69"
                     /multdbtbs="-"
                     /comp="M13"
                     /sig="Sig-"
                     /pcomp="0.955044955044955"
                     /psig="0.000999000999001"
                     /xcortree=66
                     /SigmaFactorBS="aaatcgataccagaattggatgattgtaaaagccgcagctga
                     gccaatcatttacataaaaaaaCTGCCagcgtcagccggcagtttttttagaaagaaa
                     g"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    78593..78600
                     /Source="Nicolas_upshift_promotors"
                     /id="U70"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.531468531468531"
                     /psig=1
                     /xcortree=1864
                     /SigmaFactorBS="gcggcttttacaatcatccaattctggtatcgattTGTTTAC
                     AaatgagccgctgaTCGTGTATGGTATTGTAGAAtgtttgtaaaaagtaaagtagaga
                     a"
                     /listShort="S40, coaX, hslO, yacD, cysK"
                     /listLong="pabB, pabA, pabC, sul, folB, folK, yazB, dusB,
                     S42, lysS, S43, rrnJ-16S"
                     /label="promotor_-35"
     promotor_-10    78614..78633
                     /Source="Nicolas_upshift_promotors"
                     /id="U70"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.531468531468531"
                     /psig=1
                     /xcortree=1864
                     /SigmaFactorBS="gcggcttttacaatcatccaattctggtatcgattTGTTTAC
                     AaatgagccgctgaTCGTGTATGGTATTGTAGAAtgtttgtaaaaagtaaagtagaga
                     a"
                     /listShort="S40, coaX, hslO, yacD, cysK"
                     /listLong="pabB, pabA, pabC, sul, folB, folK, yazB, dusB,
                     S42, lysS, S43, rrnJ-16S"
                     /label="promotor_-10"
     S_feature       78618..78682
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_79027_79091"
                     /HighExp="dia5, H2O2, dia15, Paraq, Diami, G180, LBGexp,
                     Oxctl, G135, G150"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA, SigA, SigA"
                     /TUshortPSig="1, 0.999, 1"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S40"
     upshifts        78618
                     /Source="Nicolas_upshifts"
                     /id="U70"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.531468531468531"
                     /psig=1
                     /xcortree=1864
                     /SigmaFactorBS="gcggcttttacaatcatccaattctggtatcgattTGTTTAC
                     AaatgagccgctgaTCGTGTATGGTATTGTAGAAtgtttgtaaaaagtaaagtagaga
                     a"
                     /listShort="S40, coaX, hslO, yacD, cysK"
                     /listLong="pabB, pabA, pabC, sul, folB, folK, yazB, dusB,
                     S42, lysS, S43, rrnJ-16S"
                     /label="upshifts"
     CDS             78683..79459
                     /gene="coaX"
                     /locus_tag="BSU_00700"
                     /old_locus_tag="BSU00700"
                     /EC_number="2.7.1.33"
                     /function="16.2: Construct biomass (Anabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:15795230, 16905099, 24784177"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 15795230, 16905099,
                     24784177; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="pantothenate kinase type III"
                     /protein_id="NP_387951.2"
                     /db_xref="EnsemblGenomes-Gn:BSU00700"
                     /db_xref="EnsemblGenomes-Tr:CAB11846"
                     /db_xref="GOA:P37564"
                     /db_xref="InterPro:IPR004619"
                     /db_xref="SubtiList:BG10133"
                     /db_xref="UniProtKB/Swiss-Prot:P37564"
                     /translation="MLLVIDVGNTNTVLGVYHDGKLEYHWRIETSRHKTEDEFGMILR
                     SLFDHSGLMFEQIDGIIISSVVPPIMFALERMCTKYFHIEPQIVGPGMKTGLNIKYDN
                     PKEVGADRIVNAVAAIHLYGNPLIVVDFGTATTYCYIDENKQYMGGAIAPGITISTEA
                     LYSRAAKLPRIEITRPDNIIGKNTVSAMQSGILFGYVGQVEGIVKRMKWQAKQEPKVI
                     ATGGLAPLIANESDCIDIVDPFLTLKGLELIYERNRVGSV*"
                     /label="coaX CDS"
     gene            78683..79459
                     /gene="coaX"
                     /locus_tag="BSU_00700"
                     /old_locus_tag="BSU00700"
                     /label="coaX gene"
     CDS             79471..80346
                     /gene="hslO"
                     /locus_tag="BSU_00710"
                     /old_locus_tag="BSU00710"
                     /function="16.6: Maintain"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 2a: Function from experimental evidences
                     in other organisms; PubMedId: 11323724, 15023991; Product
                     type f: factor"
                     /codon_start=1
                     /transl_table=11
                     /product="disulfide bond chaperone (heat shock protein
                     HSP33)"
                     /protein_id="NP_387952.1"
                     /db_xref="EnsemblGenomes-Gn:BSU00710"
                     /db_xref="EnsemblGenomes-Tr:CAB11847"
                     /db_xref="GOA:P37565"
                     /db_xref="InterPro:IPR000397"
                     /db_xref="InterPro:IPR016153"
                     /db_xref="InterPro:IPR016154"
                     /db_xref="PDB:1VZY"
                     /db_xref="SubtiList:BG10134"
                     /db_xref="UniProtKB/Swiss-Prot:P37565"
                     /translation="MDYLVKALAYDGKVRAYAARTTDMVNEGQRRHGTWPTASAALGR
                     TMTASLMLGAMLKGDDKLTVKIEGGGPIGAIVADANAKGEVRAYVSNPQVHFDLNEQG
                     KLDVRRAVGTNGTLSVVKDLGLREFFTGQVEIVSGELGDDFTYYLVSSEQVPSSVGVG
                     VLVNPDNTILAAGGFIIQLMPGTDDETITKIEQRLSQVEPISKLIQKGLTPEEILEEV
                     LGEKPEILETMPVRFHCPCSKERFETAILGLGKKEIQDMIEEDGQAEAVCHFCNEKYL
                     FTKEELEGLRDQTTR*"
                     /label="hslO CDS"
     gene            79471..80346
                     /gene="hslO"
                     /locus_tag="BSU_00710"
                     /old_locus_tag="BSU00710"
                     /label="hslO gene"
     CDS             80393..81286
                     /gene="yacD"
                     /locus_tag="BSU_00720"
                     /old_locus_tag="BSU00720"
                     /function="16.1: Circulate"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 15187182, 15856219;
                     Product type f: factor"
                     /codon_start=1
                     /transl_table=11
                     /product="putative protein chaperone accessory
                     lipoproteinfactor"
                     /protein_id="NP_387953.1"
                     /db_xref="EnsemblGenomes-Gn:BSU00720"
                     /db_xref="EnsemblGenomes-Tr:CAB11848"
                     /db_xref="GOA:P37566"
                     /db_xref="InterPro:IPR000297"
                     /db_xref="InterPro:IPR023058"
                     /db_xref="InterPro:IPR027304"
                     /db_xref="SubtiList:BG10135"
                     /db_xref="UniProtKB/Swiss-Prot:P37566"
                     /translation="MKSRTIWTIILGALLVCCIAVAYTLTKSQAGASSSGESIATIGG
                     KSVTREEWLKEMEDQYGKSTLEDMINVRVVEQLAKKNKLKISKSEVDREFLLIKAVNN
                     SFYEDEHTTEKEWKDQIRYNILLEDLLTRDIDISNKELESFYNKNKELYQFDDSYRIR
                     HIVVKDEEEAREVLKELKGGSSFEAVAAERSTDRYTSPYGGDLGFVTEASDNIPSAYI
                     EEAKTLKEDEWSQEPIKVSNGYAIIQLKEKLKARTFSFDEVKDQIRRQIAMDQLGDKA
                     TVKTLWKEADVSWFYGEKSTK*"
                     /label="yacD CDS"
     gene            80393..81286
                     /gene="yacD"
                     /locus_tag="BSU_00720"
                     /old_locus_tag="BSU00720"
                     /label="yacD gene"
     promotor_-35    81016..81021
                     /Source="Nicolas_upshift_promotors"
                     /id="U71"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.995004995004995"
                     /psig="0.995004995004995"
                     /xcortree=1220
                     /SigmaFactorBS="catcaccatacggcggagatttaggttttgtcacagaGGCAT
                     CagacaacattccatcaGCATACATTGAAGAGGCGAaaacactcaaagaggatgaatg
                     g"
                     /listShort="cysK"
                     /listLong="pabB, pabA, pabC, sul, folB, folK, yazB, dusB,
                     S42, lysS"
                     /label="promotor_-35"
     promotor_-10    81038..81056
                     /Source="Nicolas_upshift_promotors"
                     /id="U71"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.995004995004995"
                     /psig="0.995004995004995"
                     /xcortree=1220
                     /SigmaFactorBS="catcaccatacggcggagatttaggttttgtcacagaGGCAT
                     CagacaacattccatcaGCATACATTGAAGAGGCGAaaacactcaaagaggatgaatg
                     g"
                     /listShort="cysK"
                     /listLong="pabB, pabA, pabC, sul, folB, folK, yazB, dusB,
                     S42, lysS"
                     /label="promotor_-10"
     upshifts        81039
                     /Source="Nicolas_upshifts"
                     /id="U71"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.995004995004995"
                     /psig="0.995004995004995"
                     /xcortree=1220
                     /SigmaFactorBS="catcaccatacggcggagatttaggttttgtcacagaGGCAT
                     CagacaacattccatcaGCATACATTGAAGAGGCGAaaacactcaaagaggatgaatg
                     g"
                     /listShort="cysK"
                     /listLong="pabB, pabA, pabC, sul, folB, folK, yazB, dusB,
                     S42, lysS"
                     /label="upshifts"
     promotor_-35    81285..81292
                     /Source="Nicolas_upshift_promotors"
                     /id="U72"
                     /multdbtbs="SigA"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.844155844155844"
                     /psig=1
                     /xcortree=1740
                     /SigmaFactorBS="tcttggttttatggggaaaaaagtactaagtGATTGACAaaa
                     aattttgaaatTGATAGATTATATACATAATaccaatacaaatagtcggaaattgagg
                     t"
                     /listShort="cysK, pabB, pabA, pabC, sul"
                     /listLong="folB, folK, yazB, dusB, S42, lysS, S43,
                     rrnJ-16S"
                     /label="promotor_-35"
     promotor_-10    81307..81326
                     /Source="Nicolas_upshift_promotors"
                     /id="U72"
                     /multdbtbs="SigA"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.844155844155844"
                     /psig=1
                     /xcortree=1740
                     /SigmaFactorBS="tcttggttttatggggaaaaaagtactaagtGATTGACAaaa
                     aattttgaaatTGATAGATTATATACATAATaccaatacaaatagtcggaaattgagg
                     t"
                     /listShort="cysK, pabB, pabA, pabC, sul"
                     /listLong="folB, folK, yazB, dusB, S42, lysS, S43,
                     rrnJ-16S"
                     /label="promotor_-10"
     upshifts        81314
                     /Source="Nicolas_upshifts"
                     /id="U72"
                     /multdbtbs="SigA"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.844155844155844"
                     /psig=1
                     /xcortree=1740
                     /SigmaFactorBS="tcttggttttatggggaaaaaagtactaagtGATTGACAaaa
                     aattttgaaatTGATAGATTATATACATAATaccaatacaaatagtcggaaattgagg
                     t"
                     /listShort="cysK, pabB, pabA, pabC, sul"
                     /listLong="folB, folK, yazB, dusB, S42, lysS, S43,
                     rrnJ-16S"
                     /label="upshifts"
     CDS             81362..82288
                     /gene="cysK"
                     /locus_tag="BSU_00730"
                     /old_locus_tag="BSU00730"
                     /EC_number="2.5.1.47"
                     /EC_number="4.4.1.1"
                     /function="16.3: Control"
                     /function="16.2: Construct biomass (Anabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:11390694, 15760717, 16267287, 16513748, 17056751,
                     18974048"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 11390694, 15760717,
                     16267287, 16513748, 17056751, 18974048; Product type e :
                     enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine synthase"
                     /protein_id="NP_387954.1"
                     /db_xref="EnsemblGenomes-Gn:BSU00730"
                     /db_xref="EnsemblGenomes-Tr:CAB11849"
                     /db_xref="GOA:P37887"
                     /db_xref="InterPro:IPR001216"
                     /db_xref="InterPro:IPR001926"
                     /db_xref="InterPro:IPR005856"
                     /db_xref="InterPro:IPR005859"
                     /db_xref="InterPro:IPR036052"
                     /db_xref="SubtiList:BG10136"
                     /db_xref="UniProtKB/Swiss-Prot:P37887"
                     /translation="MVRVANSITELIGNTPIVKLNRLADENSADVYLKLEYMNPGSSV
                     KDRIGLAMIEAAEKEGKLKAGNTIIEPTSGNTGIGLAMVAAAKGLKAILVMPDTMSME
                     RRNLLRAYGAELVLTPGAEGMKGAIKKAEELAEKHGYFVPQQFNNPSNPEIHRQTTGK
                     EIVEQFGDDQLDAFVAGIGTGGTITGAGEVLKEAYPSIKIYAVEPSDSPVLSGGKPGP
                     HKIQGIGAGFVPDILNTEVYDEIFPVKNEEAFEYARRAAREEGILGGISSGAAIYAAL
                     QVAKKLGKGKKVLAIIPSNGERYLSTPLYQFD*"
                     /label="cysK CDS"
     gene            81362..82288
                     /gene="cysK"
                     /locus_tag="BSU_00730"
                     /old_locus_tag="BSU00730"
                     /label="cysK gene"
     downshifts      82281
                     /Source="Nicolas_upshifts"
                     /id="D35"
                     /incds=0
                     /nref=156
                     /ntot=259
                     /MaxReadThrough="5.90023"
                     /MaxDrop="5.38596"
                     /score="41.7897705"
                     /energy="-11.4"
                     /TU="U72"
                     /idTUdmin="U70"
                     /TUdmin=10
                     /isTUend="TRUE"
                     /label="downshifts"
     promotor_-35    82335..82343
                     /Source="Nicolas_upshift_promotors"
                     /id="U73"
                     /multdbtbs="-"
                     /comp="M2"
                     /sig="SigI"
                     /pcomp="0.787212787212787"
                     /psig="0.787212787212787"
                     /xcortree=1723
                     /SigmaFactorBS="aactcccggttcgccgggagtttttttatatttcgtGCATCA
                     AATatgccatgtctgcGACGAATGTtattcttggaagagaaattcacttttttcacta
                     a"
                     /listShort="pabB"
                     /listLong="pabA, pabC, sul, folB, folK, yazB, dusB, S42,
                     lysS"
                     /label="promotor_-35"
     promotor_-10    82357..82365
                     /Source="Nicolas_upshift_promotors"
                     /id="U73"
                     /multdbtbs="-"
                     /comp="M2"
                     /sig="SigI"
                     /pcomp="0.787212787212787"
                     /psig="0.787212787212787"
                     /xcortree=1723
                     /SigmaFactorBS="aactcccggttcgccgggagtttttttatatttcgtGCATCA
                     AATatgccatgtctgcGACGAATGTtattcttggaagagaaattcacttttttcacta
                     a"
                     /listShort="pabB"
                     /listLong="pabA, pabC, sul, folB, folK, yazB, dusB, S42,
                     lysS"
                     /label="promotor_-10"
     upshifts        82359
                     /Source="Nicolas_upshifts"
                     /id="U73"
                     /multdbtbs="-"
                     /comp="M2"
                     /sig="SigI"
                     /pcomp="0.787212787212787"
                     /psig="0.787212787212787"
                     /xcortree=1723
                     /SigmaFactorBS="aactcccggttcgccgggagtttttttatatttcgtGCATCA
                     AATatgccatgtctgcGACGAATGTtattcttggaagagaaattcacttttttcacta
                     a"
                     /listShort="pabB"
                     /listLong="pabA, pabC, sul, folB, folK, yazB, dusB, S42,
                     lysS"
                     /label="upshifts"
     promotor_-35    82387..82390
                     /Source="Nicolas_upshift_promotors"
                     /id="U74"
                     /multdbtbs="SigA"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.7992007992008"
                     /psig="0.998001998001998"
                     /xcortree=2267
                     /SigmaFactorBS="gcgacgaatgttattcttggaagagaaattcaCTTTtttcac
                     taacaacaTTGCTTTACAATTAAAAACAagtaaaaaagaaaatagaggaatgatacaa
                     a"
                     /listShort="pabB, pabA, pabC, sul, folB, folK, yazB, dusB,
                     S42, lysS"
                     /listLong="S43, rrnJ-16S"
                     /label="promotor_-35"
     promotor_-10    82405..82424
                     /Source="Nicolas_upshift_promotors"
                     /id="U74"
                     /multdbtbs="SigA"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.7992007992008"
                     /psig="0.998001998001998"
                     /xcortree=2267
                     /SigmaFactorBS="gcgacgaatgttattcttggaagagaaattcaCTTTtttcac
                     taacaacaTTGCTTTACAATTAAAAACAagtaaaaaagaaaatagaggaatgatacaa
                     a"
                     /listShort="pabB, pabA, pabC, sul, folB, folK, yazB, dusB,
                     S42, lysS"
                     /listLong="S43, rrnJ-16S"
                     /label="promotor_-10"
     upshifts        82415
                     /Source="Nicolas_upshifts"
                     /id="U74"
                     /multdbtbs="SigA"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.7992007992008"
                     /psig="0.998001998001998"
                     /xcortree=2267
                     /SigmaFactorBS="gcgacgaatgttattcttggaagagaaattcaCTTTtttcac
                     taacaacaTTGCTTTACAATTAAAAACAagtaaaaaagaaaatagaggaatgatacaa
                     a"
                     /listShort="pabB, pabA, pabC, sul, folB, folK, yazB, dusB,
                     S42, lysS"
                     /listLong="S43, rrnJ-16S"
                     /label="upshifts"
     CDS             82455..83867
                     /gene="pabB"
                     /locus_tag="BSU_00740"
                     /old_locus_tag="BSU00740"
                     /EC_number="2.6.1.85"
                     /function="16.2: Construct biomass (Anabolism)"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 2a: Function from experimental evidences
                     in other organisms; PubMedId: 2123867, 9084182, 16605270,
                     17114263, 25288929; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="4-amino-4-deoxychorismate synthase
                     (para-aminobenzoate synthase)"
                     /protein_id="NP_387955.1"
                     /db_xref="EnsemblGenomes-Gn:BSU00740"
                     /db_xref="EnsemblGenomes-Tr:CAB11850"
                     /db_xref="GOA:P28820"
                     /db_xref="InterPro:IPR005801"
                     /db_xref="InterPro:IPR006805"
                     /db_xref="InterPro:IPR015890"
                     /db_xref="InterPro:IPR019999"
                     /db_xref="SubtiList:BG10137"
                     /db_xref="UniProtKB/Swiss-Prot:P28820"
                     /translation="MAQRRPAGKKIPFQKDSFLQQFEKLAQSRKHHVLLESARGGRYS
                     IAGLDPIATVKGKDGITTIKHGDEMLFKEGDPLRAFHSWFKTLETETNHEFPDFQGGA
                     IGFLSYDYARYIENFKMLSLDDLETPDIYFLVFDDIAVYDHQEESLWLITHVNGSDQE
                     TADVKLSELEQMWLTELPAVTSREMKPETAGSFAAPFTEDGFSQAVEKIKQYIASGDV
                     FQVNLSIRQSQSLSVHPYQIYKTLREVNPSPYMAYLETPDFQIICGSPELLVSKKGKL
                     LETRPIAGTRSRGKTNEEDEALANELIHNEKERAEHVMLVDLERNDLGRVSRYGSVRV
                     NEFMAIEKYSHVMHIVSNVQGELQDGYDAVDIIHAVFPGGTITGAPKVRTMEIIEELE
                     PTRRGLYTGSIGWFGYNHDLQFNIVIRTIYATGGQAFMQSGAGVVIDSVPKHEYKESF
                     KKAFAMQRALELSEEETKIR*"
                     /label="pabB CDS"
     gene            82455..83867
                     /gene="pabB"
                     /locus_tag="BSU_00740"
                     /old_locus_tag="BSU00740"
                     /label="pabB gene"
     promotor_-35    83257..83259
                     /Source="Nicolas_upshift_promotors"
                     /id="U75"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.416583416583417"
                     /psig="0.621378621378621"
                     /xcortree=608
                     /SigmaFactorBS="cctgatttccaaatcatttgcggatcgcctgaacTGCttgtc
                     agcaaaaagggcAAGCTATTAGAGACGAGACcgattgcgggcacccgttccagaggga
                     a"
                     /GFF_Attribute="listShort"
                     /listLong="pabA, pabC, sul, folB, folK, yazB, dusB, S42,
                     lysS"
                     /label="promotor_-35"
     promotor_-10    83277..83295
                     /Source="Nicolas_upshift_promotors"
                     /id="U75"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.416583416583417"
                     /psig="0.621378621378621"
                     /xcortree=608
                     /SigmaFactorBS="cctgatttccaaatcatttgcggatcgcctgaacTGCttgtc
                     agcaaaaagggcAAGCTATTAGAGACGAGACcgattgcgggcacccgttccagaggga
                     a"
                     /GFF_Attribute="listShort"
                     /listLong="pabA, pabC, sul, folB, folK, yazB, dusB, S42,
                     lysS"
                     /label="promotor_-10"
     upshifts        83283
                     /Source="Nicolas_upshifts"
                     /id="U75"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.416583416583417"
                     /psig="0.621378621378621"
                     /xcortree=608
                     /SigmaFactorBS="cctgatttccaaatcatttgcggatcgcctgaacTGCttgtc
                     agcaaaaagggcAAGCTATTAGAGACGAGACcgattgcgggcacccgttccagaggga
                     a"
                     /GFF_Attribute="listShort"
                     /listLong="pabA, pabC, sul, folB, folK, yazB, dusB, S42,
                     lysS"
                     /label="upshifts"
     promotor_-35    83624..83631
                     /Source="Nicolas_upshift_promotors"
                     /id="U76"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.57942057942058"
                     /psig="0.998001998001998"
                     /xcortree=2212
                     /SigmaFactorBS="agtaagaacgatggaaattatagaagaACTTGAGCcgacacg
                     ccgagGGCTTTATACTGGATCTATAggatggtttggatataatcacgatctgcagttt
                     a"
                     /listShort="pabA, pabC, sul, folB, folK, yazB, dusB, S42,
                     lysS"
                     /listLong="S43, rrnJ-16S"
                     /label="promotor_-35"
     promotor_-10    83644..83663
                     /Source="Nicolas_upshift_promotors"
                     /id="U76"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.57942057942058"
                     /psig="0.998001998001998"
                     /xcortree=2212
                     /SigmaFactorBS="agtaagaacgatggaaattatagaagaACTTGAGCcgacacg
                     ccgagGGCTTTATACTGGATCTATAggatggtttggatataatcacgatctgcagttt
                     a"
                     /listShort="pabA, pabC, sul, folB, folK, yazB, dusB, S42,
                     lysS"
                     /listLong="S43, rrnJ-16S"
                     /label="promotor_-10"
     upshifts        83657
                     /Source="Nicolas_upshifts"
                     /id="U76"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.57942057942058"
                     /psig="0.998001998001998"
                     /xcortree=2212
                     /SigmaFactorBS="agtaagaacgatggaaattatagaagaACTTGAGCcgacacg
                     ccgagGGCTTTATACTGGATCTATAggatggtttggatataatcacgatctgcagttt
                     a"
                     /listShort="pabA, pabC, sul, folB, folK, yazB, dusB, S42,
                     lysS"
                     /listLong="S43, rrnJ-16S"
                     /label="upshifts"
     CDS             83881..84465
                     /gene="pabA"
                     /locus_tag="BSU_00750"
                     /old_locus_tag="BSU00750"
                     /EC_number="2.6.1.85"
                     /EC_number="4.1.3.27"
                     /function="16.2: Construct biomass (Anabolism)"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 2a: Function from experimental evidences
                     in other organisms; PubMedId: 9098056, 16605270, 17114263,
                     24847778; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="4-amino-4-deoxychorismate synthase;
                     anthranilatesynthase (subunit II)"
                     /protein_id="NP_387956.1"
                     /db_xref="EnsemblGenomes-Gn:BSU00750"
                     /db_xref="EnsemblGenomes-Tr:CAB11851"
                     /db_xref="GOA:P28819"
                     /db_xref="InterPro:IPR006221"
                     /db_xref="InterPro:IPR017926"
                     /db_xref="InterPro:IPR029062"
                     /db_xref="SubtiList:BG10138"
                     /db_xref="UniProtKB/Swiss-Prot:P28819"
                     /translation="MILMIDNYDSFTYNLVQYLGELGEELVVKRNDSITIDEIEELSP
                     DFLMISPGPCSPDEAGISLEAIKHFAGKIPIFGVCLGHQSIAQVFGGDVVRAERLMHG
                     KTSDIEHDGKTIFEGLKNPLVATRYHSLIVKPETLPSCFTVTAQTKEGEIMAIRHNDL
                     PIEGVQFHPESIMTSFGKEMLRNFIETYRKEVIA*"
                     /label="pabA CDS"
     gene            83881..84465
                     /gene="pabA"
                     /locus_tag="BSU_00750"
                     /old_locus_tag="BSU00750"
                     /label="pabA gene"
     CDS             84465..85346
                     /gene="pabC"
                     /locus_tag="BSU_00760"
                     /old_locus_tag="BSU00760"
                     /EC_number="4.1.3.38"
                     /function="16.2: Construct biomass (Anabolism)"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 2a: Function from experimental evidences
                     in other organisms; PubMedId: 10876155, 1644759, 22720735;
                     Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="4-amino-4-deoxychorismate pyruvate-lyase"
                     /protein_id="NP_387957.1"
                     /db_xref="EnsemblGenomes-Gn:BSU00760"
                     /db_xref="EnsemblGenomes-Tr:CAB11852"
                     /db_xref="GOA:P28821"
                     /db_xref="InterPro:IPR001544"
                     /db_xref="InterPro:IPR017824"
                     /db_xref="InterPro:IPR018300"
                     /db_xref="InterPro:IPR036038"
                     /db_xref="SubtiList:BG10139"
                     /db_xref="UniProtKB/Swiss-Prot:P28821"
                     /translation="MIYVNGRYMEEKDAVLSPFDHGFLYGIGVFETFRLYEGCPFLLD
                     WHIERLERALKDLQIEYTVSKHEILEMLDKLLKLNDIKDGNARVRLNISAGISDKGFV
                     AQTYDKPTVLCFVNQLKPESLPLQKEGKVLSIRRNTPEGSFRLKSHHYLNNMYAKREI
                     GNDPRVEGIFLTEDGAVAEGIISNVFWRKGRCIYTPSLDTGILDGVTRRFIIENAKDI
                     GLELKTGRYELEALLTADEAWMTNSVLEIIPFTKIEEVNYGSQSGEATSALQLLYKKE
                     IKNMIHEKGGRAWRSTQ*"
                     /label="pabC CDS"
     gene            84465..85346
                     /gene="pabC"
                     /locus_tag="BSU_00760"
                     /old_locus_tag="BSU00760"
                     /label="pabC gene"
     CDS             85328..86185
                     /gene="folP"
                     /locus_tag="BSU_00770"
                     /old_locus_tag="BSU00770"
                     /EC_number="2.5.1.15"
                     /function="16.2: Construct biomass (Anabolism)"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 2a: Function from experimental evidences
                     in other organisms; PubMedId: 2123867, 11007651; Product
                     type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="dihydropteroate synthase"
                     /protein_id="NP_387958.1"
                     /db_xref="EnsemblGenomes-Gn:BSU00770"
                     /db_xref="EnsemblGenomes-Tr:CAB11853"
                     /db_xref="GOA:P28822"
                     /db_xref="InterPro:IPR000489"
                     /db_xref="InterPro:IPR006390"
                     /db_xref="InterPro:IPR011005"
                     /db_xref="SubtiList:BG10140"
                     /db_xref="UniProtKB/Swiss-Prot:P28822"
                     /translation="MAQHTIDQTQVIHTKPSALSYKEKTLVMGILNVTPDSFSDGGKY
                     DSLDKALLHAKEMIDDGAHIIDIGGESTRPGAECVSEDEEMSRVIPVIERITKELGVP
                     ISVDTYKASVADEAVKAGASIINDIWGAKHDPKMASVAAEHNVPIVLMHNRPERNYND
                     LLPDMLSDLMESVKIAVEAGVDEKNIILDPGIGFAKTYHDNLAVMNKLEIFSGLGYPV
                     LLATSRKRFIGRVLDLPPEERAEGTGATVCLGIQKGCDIVRVHDVKQIARMAKMMDAM
                     LNKGGVHHG*"
                     /label="folP CDS"
     gene            85328..86185
                     /gene="folP"
                     /locus_tag="BSU_00770"
                     /old_locus_tag="BSU00770"
                     /label="folP gene"
     CDS             86178..86540
                     /gene="folB"
                     /locus_tag="BSU_00780"
                     /old_locus_tag="BSU00780"
                     /EC_number="4.1.2.25"
                     /function="16.2: Construct biomass (Anabolism)"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 2a: Function from experimental evidences
                     in other organisms; PubMedId: 16188473, 17176045,
                     17388809; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroneopterin aldolase"
                     /protein_id="NP_387959.1"
                     /db_xref="EnsemblGenomes-Gn:BSU00780"
                     /db_xref="EnsemblGenomes-Tr:CAB11854"
                     /db_xref="GOA:P28823"
                     /db_xref="InterPro:IPR006156"
                     /db_xref="InterPro:IPR006157"
                     /db_xref="SubtiList:BG10141"
                     /db_xref="UniProtKB/Swiss-Prot:P28823"
                     /translation="MDKVYVEGMEFYGYHGVFTEENKLGQRFKVDLTAELDLSKAGQT
                     DDLEQTINYAELYHVCKDIVEGEPVKLVETLAERIAGTVLGKFQPVQQCTVKVIKPDP
                     PIPGHYKSVAIEITRKKS*"
                     /label="folB CDS"
     gene            86178..86540
                     /gene="folB"
                     /locus_tag="BSU_00780"
                     /old_locus_tag="BSU00780"
                     /label="folB gene"
     CDS             86537..87040
                     /gene="folK"
                     /locus_tag="BSU_00790"
                     /old_locus_tag="BSU00790"
                     /EC_number="2.7.6.3"
                     /function="16.2: Construct biomass (Anabolism)"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 2a: Function from experimental evidences
                     in other organisms; PubMedId: 17029412; Product type e :
                     enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="7,8-dihydro-6-hydroxymethylpterin
                     pyrophosphokinase"
                     /protein_id="NP_387960.1"
                     /db_xref="EnsemblGenomes-Gn:BSU00790"
                     /db_xref="EnsemblGenomes-Tr:CAB11855"
                     /db_xref="GOA:P29252"
                     /db_xref="InterPro:IPR000550"
                     /db_xref="InterPro:IPR035907"
                     /db_xref="SubtiList:BG10142"
                     /db_xref="UniProtKB/Swiss-Prot:P29252"
                     /translation="MNNIAYIALGSNIGDRETYLRQAVALLHQHAAVTVTKVSSIYET
                     DPVGYEDQAQFLNMAVEIKTSLNPFELLELTQQIENELGRTREVRWGPRTADLDILLF
                     NRENIETEQLIVPHPRMYERLFVLAPLAEICQQVEKEATSAETDQEGVRVWKQKSGVD
                     EFVHSES*"
                     /label="folK CDS"
     gene            86537..87040
                     /gene="folK"
                     /locus_tag="BSU_00790"
                     /old_locus_tag="BSU00790"
                     /label="folK gene"
     CDS             86992..87201
                     /gene="yazB"
                     /locus_tag="BSU_00800"
                     /old_locus_tag="BSU00800"
                     /function="16.3: Control"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; Product type r: regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="putative transcriptional regulator"
                     /protein_id="NP_387961.1"
                     /db_xref="EnsemblGenomes-Gn:BSU00800"
                     /db_xref="EnsemblGenomes-Tr:CAB11856"
                     /db_xref="GOA:O31417"
                     /db_xref="InterPro:IPR001387"
                     /db_xref="InterPro:IPR010982"
                     /db_xref="SubtiList:BG12701"
                     /db_xref="UniProtKB/Swiss-Prot:O31417"
                     /translation="MEAEIWGRRIRAFRKLKGYTQEGFAKALGISVSILGEIERGNRL
                     PSAAIIQDAADVLNISADELAPPEK*"
                     /label="yazB CDS"
     gene            86992..87201
                     /gene="yazB"
                     /locus_tag="BSU_00800"
                     /old_locus_tag="BSU00800"
                     /label="yazB gene"
     CDS             87225..88226
                     /gene="dusB"
                     /locus_tag="BSU_00810"
                     /old_locus_tag="BSU00810"
                     /EC_number="1.-.-.-"
                     /function="16.6: Maintain"
                     /function="16.2: Construct biomass (Anabolism)"
                     /function="16.3: Control"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 2a: Function from experimental evidences
                     in other organisms; PubMedId: 11983710, 15698474,
                     26112661; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA-dihydrouridine synthase B"
                     /protein_id="NP_387962.1"
                     /db_xref="EnsemblGenomes-Gn:BSU00810"
                     /db_xref="EnsemblGenomes-Tr:CAB11857"
                     /db_xref="GOA:P37567"
                     /db_xref="InterPro:IPR001269"
                     /db_xref="InterPro:IPR004652"
                     /db_xref="InterPro:IPR013785"
                     /db_xref="InterPro:IPR018517"
                     /db_xref="InterPro:IPR024036"
                     /db_xref="InterPro:IPR035587"
                     /db_xref="SubtiList:BG10143"
                     /db_xref="UniProtKB/Swiss-Prot:P37567"
                     /translation="MFKIGDIQLKNRVVLAPMAGVCNSAFRLTVKEFGAGLVCAEMVS
                     DKAILYNNARTMGMLYIDEREKPLSLQIFGGKKETLVEAAKFVDQNTTADIIDINMGC
                     PVPKITKCDAGAKWLLDPDKIYEMVSAVVDAVNKPVTVKMRMGWDEDHIFAVKNAQAV
                     ERAGGKAVALHGRTRVQMYEGTANWDIIKEVKQSVSIPVIGNGDVKTPQDAKRMLDET
                     GVDGVMIGRAALGNPWMIYRTVQYLETGKLKEEPQVREKMAVCKLHLDRLIDLKGENV
                     AVREMRKHAAWYLKGVKGNANVRNEINHCETREEFVQLLDAFTVEVEAKELQNAKVG*
                     "
                     /label="dusB CDS"
     gene            87225..88226
                     /gene="dusB"
                     /locus_tag="BSU_00810"
                     /old_locus_tag="BSU00810"
                     /label="dusB gene"
     S_feature       complement(87641..89157)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_88050_89566_c"
                     /HighExp="LoTm, C30, S6, S8, S5, S7, S3, S4, C90, G135"
                     /AntisenseName="dusB"
                     /AntisenseCor="-0.60218706634778196"
                     /AntisenseRegPval="-27.2"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigEF"
                     /TUshortPSig=1
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S41"
     S_feature       88227..88317
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_88636_88726"
                     /HighExp="H2O2, G180, G150, Paraq, G135, Oxctl, Diami,
                     C30, LBGexp, C90"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA, SigA"
                     /TUshortPSig="0.998, 0.998"
                     /TUlongSig="SigA, SigI, SigA, SigEF, SigA, SigA, SigA"
                     /TUlongPSig="0.621, 0.787, 1, 0.995, 1, 0.999, 1"
                     /label="S42"
     CDS             88318..89817
                     /gene="lysS"
                     /locus_tag="BSU_00820"
                     /old_locus_tag="BSU00820"
                     /EC_number="6.1.1.6"
                     /function="16.2: Construct biomass (Anabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:12682299, 14623972, 20649968"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 12682299, 14623972,
                     20649968; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="lysyl-tRNA synthetase"
                     /protein_id="NP_387963.1"
                     /db_xref="EnsemblGenomes-Gn:BSU00820"
                     /db_xref="EnsemblGenomes-Tr:CAB11858"
                     /db_xref="GOA:P37477"
                     /db_xref="InterPro:IPR002313"
                     /db_xref="InterPro:IPR004364"
                     /db_xref="InterPro:IPR004365"
                     /db_xref="InterPro:IPR006195"
                     /db_xref="InterPro:IPR012340"
                     /db_xref="InterPro:IPR018149"
                     /db_xref="InterPro:IPR034762"
                     /db_xref="SubtiList:BG10144"
                     /db_xref="UniProtKB/Swiss-Prot:P37477"
                     /translation="MSQEEHNHEELNDQLQVRRDKMNQLRDNGIDPFGARFERTHQSQ
                     EVISAYQDLTKEELEEKAIEVTIAGRMMTKRGKGKAGFAHLQDLEGQIQIYVRKDSVG
                     DDQYEIFKSSDLGDLIGVTGKVFKTNVGELSVKATSFELLTKALRPLPDKYHGLKDVE
                     QRYRQRYLDLIVNPDSKHTFITRSKIIQAMRRYLDDHGYLEVETPTMHSIPGGASARP
                     FITHHNALDIPLYMRIAIELHLKRLIVGGLEKVYEIGRVFRNEGVSTRHNPEFTMIEL
                     YEAYADYKDIMSLTENLVAHIAQEVLGTTTIQYGEEQIDLKPEWKRIHMVDAVKEATG
                     VDFWEEVTVEQAREYAKEHEVEIKDSMTVGHIINEFFEQKIEETLIQPTFIYGHPVEI
                     SPLAKKNPEDPRFTDRFELFIVGREHANAFTELNDPIDQRERFEAQLKEREAGNDEAH
                     LMDEDFVEALEYGMPPTGGLGIGIDRLVMLLTNAPSIRDVLLFPQMRQR*"
                     /label="lysS CDS"
     gene            88318..89817
                     /gene="lysS"
                     /locus_tag="BSU_00820"
                     /old_locus_tag="BSU00820"
                     /label="lysS gene"
     promotor_-10    complement(89141..89159)
                     /Source="Nicolas_upshift_promotors"
                     /id="U77"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp=1
                     /psig=1
                     /xcortree=1081
                     /SigmaFactorBS="ttcttgggcgatatgagcgacaaggttttcagttaagCTCAT
                     GatatctttatagtccGCATATGCTTCATATAACTcaatcattgtaaattcagggtta
                     t"
                     /listShort="S41"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(89157)
                     /Source="Nicolas_upshifts"
                     /id="U77"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp=1
                     /psig=1
                     /xcortree=1081
                     /SigmaFactorBS="ttcttgggcgatatgagcgacaaggttttcagttaagCTCAT
                     GatatctttatagtccGCATATGCTTCATATAACTcaatcattgtaaattcagggtta
                     t"
                     /listShort="S41"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(89175..89180)
                     /Source="Nicolas_upshift_promotors"
                     /id="U77"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp=1
                     /psig=1
                     /xcortree=1081
                     /SigmaFactorBS="ttcttgggcgatatgagcgacaaggttttcagttaagCTCAT
                     GatatctttatagtccGCATATGCTTCATATAACTcaatcattgtaaattcagggtta
                     t"
                     /listShort="S41"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     downshifts      89798
                     /Source="Nicolas_upshifts"
                     /id="D36"
                     /incds=0
                     /nref=104
                     /ntot=219
                     /MaxReadThrough="4.49559"
                     /MaxDrop="4.89484"
                     /score="4.33485487"
                     /energy="-18.1"
                     /TU="U76"
                     /idTUdmin="U74"
                     /TUdmin=3
                     /isTUend="TRUE"
                     /label="downshifts"
     promotor_-35    89893..89900
                     /Source="Nicolas_upshift_promotors"
                     /id="U78"
                     /multdbtbs="-"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp="0.999000999001"
                     /psig=1
                     /xcortree=2623
                     /SigmaFactorBS="gatgccgctctttttaaatcccttagtatttcttcaaaaaaa
                     ctATTGCACTattatttactaggTGGTATATTATTATTCGTTGccgctaaacaaggcg
                     a"
                     /listShort="S43, rrnJ-16S, rrnJ-23S, rrnJ-5S, trnJ-Val,
                     trnJ-Thr, trnJ-Lys, trnJ-Leu1, trnJ-Gly, trnJ-Leu2,
                     trnJ-Arg, trnJ-Pro"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     S_feature       89909..90126
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_90318_90535"
                     /HighExp="LBGstat, H2O2, Oxctl, Diami, dia15, Paraq, MG
                     25, Heat, MG 15, UNK1"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig=1
                     /TUlongSig="SigA, SigA, SigA, SigA, SigA, SigA"
                     /TUlongPSig="0.998, 0.998, 1, 1, 0.999, 1"
                     /label="S43"
     upshifts        89909
                     /Source="Nicolas_upshifts"
                     /id="U78"
                     /multdbtbs="-"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp="0.999000999001"
                     /psig=1
                     /xcortree=2623
                     /SigmaFactorBS="gatgccgctctttttaaatcccttagtatttcttcaaaaaaa
                     ctATTGCACTattatttactaggTGGTATATTATTATTCGTTGccgctaaacaaggcg
                     a"
                     /listShort="S43, rrnJ-16S, rrnJ-23S, rrnJ-5S, trnJ-Val,
                     trnJ-Thr, trnJ-Lys, trnJ-Leu1, trnJ-Gly, trnJ-Leu2,
                     trnJ-Arg, trnJ-Pro"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-10    89914..89933
                     /Source="Nicolas_upshift_promotors"
                     /id="U78"
                     /multdbtbs="-"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp="0.999000999001"
                     /psig=1
                     /xcortree=2623
                     /SigmaFactorBS="gatgccgctctttttaaatcccttagtatttcttcaaaaaaa
                     ctATTGCACTattatttactaggTGGTATATTATTATTCGTTGccgctaaacaaggcg
                     a"
                     /listShort="S43, rrnJ-16S, rrnJ-23S, rrnJ-5S, trnJ-Val,
                     trnJ-Thr, trnJ-Lys, trnJ-Leu1, trnJ-Gly, trnJ-Leu2,
                     trnJ-Arg, trnJ-Pro"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     downshifts      complement(89959)
                     /Source="Nicolas_upshifts"
                     /id="D37"
                     /incds=0
                     /nref=3
                     /ntot=51
                     /MaxReadThrough="3.16217"
                     /MaxDrop="5.0092"
                     /score="18.6635354"
                     /energy="-16.9"
                     /TU="NA"
                     /idTUdmin="U77"
                     /TUdmin="-2288"
                     /isTUend="FALSE"
                     /label="downshifts"
     rRNA            90127..91680
                     /gene="rrnJ-16S"
                     /locus_tag="BSU_rRNA_6"
                     /product="ribosomal RNA-16S"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; Product type n: RNA"
                     /function="16.2: Construct biomass (Anabolism)"
                     /label="rrnJ-16S rRNA"
     gene            90127..91680
                     /gene="rrnJ-16S"
                     /locus_tag="BSU_rRNA_6"
                     /label="rrnJ-16S gene"
     rRNA            91845..94772
                     /gene="rrnJ-23S"
                     /locus_tag="BSU_rRNA_7"
                     /product="ribosomal RNA-23S"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; Product type n: RNA"
                     /function="16.2: Construct biomass (Anabolism)"
                     /label="rrnJ-23S rRNA"
     gene            91845..94772
                     /gene="rrnJ-23S"
                     /locus_tag="BSU_rRNA_7"
                     /label="rrnJ-23S gene"
     rRNA            94828..94945
                     /gene="rrnJ-5S"
                     /locus_tag="BSU_rRNA_8"
                     /product="ribosomal RNA-5S"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; Product type n: RNA"
                     /function="16.2: Construct biomass (Anabolism)"
                     /label="rrnJ-5S rRNA"
     gene            94828..94945
                     /gene="rrnJ-5S"
                     /locus_tag="BSU_rRNA_8"
                     /label="rrnJ-5S gene"
     tRNA            94966..95041
                     /gene="trnJ-Val"
                     /locus_tag="BSU_tRNA_12"
                     /product="tRNA-Val"
                     /inference="profile:tRNAscan:1.23"
                     /note="transfer RNA-Val(UAC); Evidence 2a: Function from
                     experimental evidences in other organisms; Product type n:
                     RNA"
                     /function="16.2: Construct biomass (Anabolism)"
                     /label="trnJ-Val tRNA"
     gene            94966..95041
                     /gene="trnJ-Val"
                     /locus_tag="BSU_tRNA_12"
                     /label="trnJ-Val gene"
     tRNA            95046..95121
                     /gene="trnJ-Thr"
                     /locus_tag="BSU_tRNA_13"
                     /product="tRNA-Thr"
                     /inference="profile:tRNAscan:1.23"
                     /note="transfer RNA-Thr(UGU); Evidence 2a: Function from
                     experimental evidences in other organisms; Product type n:
                     RNA"
                     /function="16.2: Construct biomass (Anabolism)"
                     /label="trnJ-Thr tRNA"
     gene            95046..95121
                     /gene="trnJ-Thr"
                     /locus_tag="BSU_tRNA_13"
                     /label="trnJ-Thr gene"
     tRNA            95158..95233
                     /gene="trnJ-Lys"
                     /locus_tag="BSU_tRNA_14"
                     /product="tRNA-Lys"
                     /inference="profile:tRNAscan:1.23"
                     /note="transfer RNA-Lys(UUU); Evidence 2a: Function from
                     experimental evidences in other organisms; Product type n:
                     RNA"
                     /function="16.2: Construct biomass (Anabolism)"
                     /label="trnJ-Lys tRNA"
     gene            95158..95233
                     /gene="trnJ-Lys"
                     /locus_tag="BSU_tRNA_14"
                     /label="trnJ-Lys gene"
     tRNA            95240..95322
                     /gene="trnJ-Leu1"
                     /locus_tag="BSU_tRNA_15"
                     /product="tRNA-Leu"
                     /inference="profile:tRNAscan:1.23"
                     /note="transfer RNA-Leu(UAG); Evidence 2a: Function from
                     experimental evidences in other organisms; Product type n:
                     RNA"
                     /function="16.2: Construct biomass (Anabolism)"
                     /label="trnJ-Leu1 tRNA"
     gene            95240..95322
                     /gene="trnJ-Leu1"
                     /locus_tag="BSU_tRNA_15"
                     /label="trnJ-Leu1 gene"
     tRNA            95363..95437
                     /gene="trnJ-Gly"
                     /locus_tag="BSU_tRNA_16"
                     /product="tRNA-Gly"
                     /inference="profile:tRNAscan:1.23"
                     /note="transfer RNA-Gly(GCC); Evidence 2a: Function from
                     experimental evidences in other organisms; Product type n:
                     RNA"
                     /function="16.2: Construct biomass (Anabolism)"
                     /label="trnJ-Gly tRNA"
     gene            95363..95437
                     /gene="trnJ-Gly"
                     /locus_tag="BSU_tRNA_16"
                     /label="trnJ-Gly gene"
     tRNA            95452..95537
                     /gene="trnJ-Leu2"
                     /locus_tag="BSU_tRNA_17"
                     /product="tRNA-Leu"
                     /inference="profile:tRNAscan:1.23"
                     /note="transfer RNA-Leu(UAA); Evidence 2a: Function from
                     experimental evidences in other organisms; Product type n:
                     RNA"
                     /function="16.2: Construct biomass (Anabolism)"
                     /label="trnJ-Leu2 tRNA"
     gene            95452..95537
                     /gene="trnJ-Leu2"
                     /locus_tag="BSU_tRNA_17"
                     /label="trnJ-Leu2 gene"
     tRNA            95547..95623
                     /gene="trnJ-Arg"
                     /locus_tag="BSU_tRNA_18"
                     /product="tRNA-Arg"
                     /inference="profile:tRNAscan:1.23"
                     /note="arginine transfer RNA(ACG); Evidence 2a: Function
                     from experimental evidences in other organisms; PubMedId:
                     27749819; Product type n : RNA"
                     /function="16.2: Construct biomass (Anabolism)"
                     /label="trnJ-Arg tRNA"
     gene            95547..95623
                     /gene="trnJ-Arg"
                     /locus_tag="BSU_tRNA_18"
                     /label="trnJ-Arg gene"
     tRNA            95651..95727
                     /gene="trnJ-Pro"
                     /locus_tag="BSU_tRNA_19"
                     /product="tRNA-Pro"
                     /inference="profile:tRNAscan:1.23"
                     /note="transfer RNA-Pro(UGG); Evidence 2a: Function from
                     experimental evidences in other organisms; Product type n:
                     RNA"
                     /function="16.2: Construct biomass (Anabolism)"
                     /label="trnJ-Pro tRNA"
     gene            95651..95727
                     /gene="trnJ-Pro"
                     /locus_tag="BSU_tRNA_19"
                     /label="trnJ-Pro gene"
     tRNA            95737..95812
                     /gene="trnJ-Ala"
                     /locus_tag="BSU_tRNA_20"
                     /product="tRNA-Ala"
                     /inference="profile:tRNAscan:1.23"
                     /note="transfer RNA-Ala(UGC); Evidence 2a: Function from
                     experimental evidences in other organisms; Product type n:
                     RNA"
                     /function="16.2: Construct biomass (Anabolism)"
                     /label="trnJ-Ala tRNA"
     gene            95737..95812
                     /gene="trnJ-Ala"
                     /locus_tag="BSU_tRNA_20"
                     /label="trnJ-Ala gene"
     rRNA            95983..97536
                     /gene="rrnW-16S"
                     /locus_tag="BSU_rRNA_9"
                     /product="ribosomal RNA-16S"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; Product type n: RNA"
                     /function="16.2: Construct biomass (Anabolism)"
                     /label="rrnW-16S rRNA"
     gene            95983..97536
                     /gene="rrnW-16S"
                     /locus_tag="BSU_rRNA_9"
                     /label="rrnW-16S gene"
     rRNA            97701..100628
                     /gene="rrnW-23S"
                     /locus_tag="BSU_rRNA_10"
                     /product="ribosomal RNA-23S"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; Product type n: RNA"
                     /function="16.2: Construct biomass (Anabolism)"
                     /label="rrnW-23S rRNA"
     gene            97701..100628
                     /gene="rrnW-23S"
                     /locus_tag="BSU_rRNA_10"
                     /label="rrnW-23S gene"
     rRNA            100684..100802
                     /gene="rrnW-5S"
                     /locus_tag="BSU_rRNA_11"
                     /product="ribosomal RNA-5S"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; Product type n: RNA"
                     /function="16.2: Construct biomass (Anabolism)"
                     /label="rrnW-5S rRNA"
     gene            100684..100802
                     /gene="rrnW-5S"
                     /locus_tag="BSU_rRNA_11"
                     /label="rrnW-5S gene"
     S_feature       100803..100880
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_101212_101289"
                     /HighExp="G135, G180, G150, Cold, Paraq, Oxctl, H2O2, C30,
                     BMM, Lbexp"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="NA"
                     /TUshortPSig="NA"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S44"
     promotor_-35    100850..100853
                     /Source="Nicolas_upshift_promotors"
                     /id="U79"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.37962037962038"
                     /psig="0.947052947052947"
                     /xcortree=1441
                     /SigmaFactorBS="gctgggttttttgtattttggtttattgGTATcataaaattc
                     cacttAACTGTATAATATAATAACTttataccgaattttaaatcagcaatcaggtttt
                     g"
                     /listShort="ctsR, mcsA, mcsB, clpC"
                     /listLong="radA, disA, S45, yacL, ispD, ispF, gltX, S46,
                     cysE, cysS, mrnC, rlmB, yacP, sigH, S47, rpmGB, secE, S48,
                     nusG, S49, rplK, S50, rplA, NA, rplJ, rplL, ybxB, S51,
                     rpoB, rpoC, S52, rplGB, S53, rpsL, rpsG, fusA, S54, tufA,
                     ybaC, S55, rpsJ, rplC, rplD, rplW, rplB, rpsS, rplV, rpsC,
                     rplP, rpmC, rpsQ, rplNA, rplX, rplE, rpsNA, rpsH, rplF,
                     rplR, rpsE, rpmD, rplO, secY, adk, mapA, ybzG, infA, rpmJ,
                     rpsM, rpsK, S56, rpoA, rplQ, S57, ybxA, ybaE, ybaF, truA,
                     NA, rplM, rpsI, S59, ybaJ"
                     /label="promotor_-35"
     promotor_-10    100869..100888
                     /Source="Nicolas_upshift_promotors"
                     /id="U79"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.37962037962038"
                     /psig="0.947052947052947"
                     /xcortree=1441
                     /SigmaFactorBS="gctgggttttttgtattttggtttattgGTATcataaaattc
                     cacttAACTGTATAATATAATAACTttataccgaattttaaatcagcaatcaggtttt
                     g"
                     /listShort="ctsR, mcsA, mcsB, clpC"
                     /listLong="radA, disA, S45, yacL, ispD, ispF, gltX, S46,
                     cysE, cysS, mrnC, rlmB, yacP, sigH, S47, rpmGB, secE, S48,
                     nusG, S49, rplK, S50, rplA, NA, rplJ, rplL, ybxB, S51,
                     rpoB, rpoC, S52, rplGB, S53, rpsL, rpsG, fusA, S54, tufA,
                     ybaC, S55, rpsJ, rplC, rplD, rplW, rplB, rpsS, rplV, rpsC,
                     rplP, rpmC, rpsQ, rplNA, rplX, rplE, rpsNA, rpsH, rplF,
                     rplR, rpsE, rpmD, rplO, secY, adk, mapA, ybzG, infA, rpmJ,
                     rpsM, rpsK, S56, rpoA, rplQ, S57, ybxA, ybaE, ybaF, truA,
                     NA, rplM, rpsI, S59, ybaJ"
                     /label="promotor_-10"
     upshifts        100882
                     /Source="Nicolas_upshifts"
                     /id="U79"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.37962037962038"
                     /psig="0.947052947052947"
                     /xcortree=1441
                     /SigmaFactorBS="gctgggttttttgtattttggtttattgGTATcataaaattc
                     cacttAACTGTATAATATAATAACTttataccgaattttaaatcagcaatcaggtttt
                     g"
                     /listShort="ctsR, mcsA, mcsB, clpC"
                     /listLong="radA, disA, S45, yacL, ispD, ispF, gltX, S46,
                     cysE, cysS, mrnC, rlmB, yacP, sigH, S47, rpmGB, secE, S48,
                     nusG, S49, rplK, S50, rplA, NA, rplJ, rplL, ybxB, S51,
                     rpoB, rpoC, S52, rplGB, S53, rpsL, rpsG, fusA, S54, tufA,
                     ybaC, S55, rpsJ, rplC, rplD, rplW, rplB, rpsS, rplV, rpsC,
                     rplP, rpmC, rpsQ, rplNA, rplX, rplE, rpsNA, rpsH, rplF,
                     rplR, rpsE, rpmD, rplO, secY, adk, mapA, ybzG, infA, rpmJ,
                     rpsM, rpsK, S56, rpoA, rplQ, S57, ybxA, ybaE, ybaF, truA,
                     NA, rplM, rpsI, S59, ybaJ"
                     /label="upshifts"
     promotor_-35    100916..100922
                     /Source="Nicolas_upshift_promotors"
                     /id="U80"
                     /multdbtbs="SigB"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp=1
                     /psig=1
                     /xcortree=150
                     /SigmaFactorBS="ctttataccgaattttaaatcagcaatcaGGTTTTGtggacc
                     gggaaaaTGGAAATAATGAAGGATAGAgcgagaaagttgaaaattctcgagaaacggc
                     t"
                     /listShort="ctsR, mcsA, mcsB, clpC, radA, disA, S45, yacL,
                     ispD, ispF"
                     /listLong="gltX, S46, cysE, cysS, mrnC, rlmB, yacP, sigH,
                     S47, rpmGB, secE, S48, nusG, S49, rplK, S50, rplA, NA,
                     rplJ, rplL, ybxB, S51, rpoB, rpoC, S52, rplGB, S53, rpsL,
                     rpsG, fusA, S54, tufA, ybaC"
                     /label="promotor_-35"
     promotor_-10    100936..100955
                     /Source="Nicolas_upshift_promotors"
                     /id="U80"
                     /multdbtbs="SigB"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp=1
                     /psig=1
                     /xcortree=150
                     /SigmaFactorBS="ctttataccgaattttaaatcagcaatcaGGTTTTGtggacc
                     gggaaaaTGGAAATAATGAAGGATAGAgcgagaaagttgaaaattctcgagaaacggc
                     t"
                     /listShort="ctsR, mcsA, mcsB, clpC, radA, disA, S45, yacL,
                     ispD, ispF"
                     /listLong="gltX, S46, cysE, cysS, mrnC, rlmB, yacP, sigH,
                     S47, rpmGB, secE, S48, nusG, S49, rplK, S50, rplA, NA,
                     rplJ, rplL, ybxB, S51, rpoB, rpoC, S52, rplGB, S53, rpsL,
                     rpsG, fusA, S54, tufA, ybaC"
                     /label="promotor_-10"
     upshifts        100947
                     /Source="Nicolas_upshifts"
                     /id="U80"
                     /multdbtbs="SigB"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp=1
                     /psig=1
                     /xcortree=150
                     /SigmaFactorBS="ctttataccgaattttaaatcagcaatcaGGTTTTGtggacc
                     gggaaaaTGGAAATAATGAAGGATAGAgcgagaaagttgaaaattctcgagaaacggc
                     t"
                     /listShort="ctsR, mcsA, mcsB, clpC, radA, disA, S45, yacL,
                     ispD, ispF"
                     /listLong="gltX, S46, cysE, cysS, mrnC, rlmB, yacP, sigH,
                     S47, rpmGB, secE, S48, nusG, S49, rplK, S50, rplA, NA,
                     rplJ, rplL, ybxB, S51, rpoB, rpoC, S52, rplGB, S53, rpsL,
                     rpsG, fusA, S54, tufA, ybaC"
                     /label="upshifts"
     promotor_-35    100962..100969
                     /Source="Nicolas_upshift_promotors"
                     /id="U81"
                     /multdbtbs="SigA"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.736263736263736"
                     /psig=1
                     /xcortree=2024
                     /SigmaFactorBS="atggaaataatgaaggatagagcgagaAAGTTGAAaattctc
                     gagaaaCGGCTTATAGTAAGATTAAAgtcaaatatagtcaaagtcagtaaaggagggg
                     g"
                     /listShort="ctsR, mcsA, mcsB, clpC, radA, disA, S45, yacL,
                     ispD, ispF"
                     /listLong="gltX, S46, cysE, cysS, mrnC, rlmB, yacP, sigH,
                     S47, rpmGB, secE, S48, nusG, S49, rplK, S50, rplA, NA,
                     rplJ, rplL, ybxB, S51, rpoB, rpoC, S52, rplGB, S53, rpsL,
                     rpsG, fusA, S54, tufA, ybaC, S55, rpsJ, rplC, rplD, rplW,
                     rplB, rpsS, rplV, rpsC, rplP, rpmC, rpsQ, rplNA, rplX,
                     rplE, rpsNA, rpsH, rplF, rplR, rpsE, rpmD, rplO, secY,
                     adk, mapA, ybzG, infA, rpmJ, rpsM, rpsK, S56, rpoA, rplQ,
                     S57, ybxA, ybaE, ybaF, truA, NA, rplM, rpsI, S59, ybaJ"
                     /label="promotor_-35"
     promotor_-10    100983..101002
                     /Source="Nicolas_upshift_promotors"
                     /id="U81"
                     /multdbtbs="SigA"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.736263736263736"
                     /psig=1
                     /xcortree=2024
                     /SigmaFactorBS="atggaaataatgaaggatagagcgagaAAGTTGAAaattctc
                     gagaaaCGGCTTATAGTAAGATTAAAgtcaaatatagtcaaagtcagtaaaggagggg
                     g"
                     /listShort="ctsR, mcsA, mcsB, clpC, radA, disA, S45, yacL,
                     ispD, ispF"
                     /listLong="gltX, S46, cysE, cysS, mrnC, rlmB, yacP, sigH,
                     S47, rpmGB, secE, S48, nusG, S49, rplK, S50, rplA, NA,
                     rplJ, rplL, ybxB, S51, rpoB, rpoC, S52, rplGB, S53, rpsL,
                     rpsG, fusA, S54, tufA, ybaC, S55, rpsJ, rplC, rplD, rplW,
                     rplB, rpsS, rplV, rpsC, rplP, rpmC, rpsQ, rplNA, rplX,
                     rplE, rpsNA, rpsH, rplF, rplR, rpsE, rpmD, rplO, secY,
                     adk, mapA, ybzG, infA, rpmJ, rpsM, rpsK, S56, rpoA, rplQ,
                     S57, ybxA, ybaE, ybaF, truA, NA, rplM, rpsI, S59, ybaJ"
                     /label="promotor_-10"
     upshifts        100995
                     /Source="Nicolas_upshifts"
                     /id="U81"
                     /multdbtbs="SigA"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.736263736263736"
                     /psig=1
                     /xcortree=2024
                     /SigmaFactorBS="atggaaataatgaaggatagagcgagaAAGTTGAAaattctc
                     gagaaaCGGCTTATAGTAAGATTAAAgtcaaatatagtcaaagtcagtaaaggagggg
                     g"
                     /listShort="ctsR, mcsA, mcsB, clpC, radA, disA, S45, yacL,
                     ispD, ispF"
                     /listLong="gltX, S46, cysE, cysS, mrnC, rlmB, yacP, sigH,
                     S47, rpmGB, secE, S48, nusG, S49, rplK, S50, rplA, NA,
                     rplJ, rplL, ybxB, S51, rpoB, rpoC, S52, rplGB, S53, rpsL,
                     rpsG, fusA, S54, tufA, ybaC, S55, rpsJ, rplC, rplD, rplW,
                     rplB, rpsS, rplV, rpsC, rplP, rpmC, rpsQ, rplNA, rplX,
                     rplE, rpsNA, rpsH, rplF, rplR, rpsE, rpmD, rplO, secY,
                     adk, mapA, ybzG, infA, rpmJ, rpsM, rpsK, S56, rpoA, rplQ,
                     S57, ybxA, ybaE, ybaF, truA, NA, rplM, rpsI, S59, ybaJ"
                     /label="upshifts"
     CDS             101040..101504
                     /gene="ctsR"
                     /locus_tag="BSU_00830"
                     /old_locus_tag="BSU00830"
                     /function="16.3: Control"
                     /experiment="publication(s) with functional evidences,
                     PMID:2120829, 9852015, 11069659, 12618461, 16163393,
                     20852588, 24465625, 27388279"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 2120829, 9852015,
                     11069659, 12618461, 16163393, 20852588, 24465625,
                     27388279; Product type r: regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator of class III stress
                     genes"
                     /protein_id="NP_387964.1"
                     /db_xref="EnsemblGenomes-Gn:BSU00830"
                     /db_xref="EnsemblGenomes-Tr:CAB11859"
                     /db_xref="GOA:P37568"
                     /db_xref="InterPro:IPR008463"
                     /db_xref="SubtiList:BG10145"
                     /db_xref="UniProtKB/Swiss-Prot:P37568"
                     /translation="MGHNISDIIEQYLKRVLDQNGKEILEIKRSEIADKFQCVPSQIN
                     YVINTRFTSERGYIVESKRGGGGYIRIIKIKMNNEVVLINNIISQINTHLSQAASDDI
                     ILRLLEDKVISEREAKMMVSVMDRSVLHIDLPERDELRARMMKAMLTSLKLK*"
                     /label="ctsR CDS"
     gene            101040..101504
                     /gene="ctsR"
                     /locus_tag="BSU_00830"
                     /old_locus_tag="BSU00830"
                     /label="ctsR gene"
     misc_feature    complement(101151..101155)
                     /Source="Nicolas_upshift_promotors"
                     /id="U82"
                     /multdbtbs="-"
                     /comp="M13"
                     /sig="Sig-"
                     /pcomp="0.811188811188811"
                     /psig="0.0769230769230769"
                     /xcortree=50
                     /SigmaFactorBS="caacaatatatcctctttcgcttgtaaatctggtgttgatga
                     cataatttatttgggaaggaACGCAttgaaatttatctgcaatttcacttcgtttaat
                     c"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_single_box"
                     /note="Geneious type: promotor_single_box"
     upshifts        complement(101157)
                     /Source="Nicolas_upshifts"
                     /id="U82"
                     /multdbtbs="-"
                     /comp="M13"
                     /sig="Sig-"
                     /pcomp="0.811188811188811"
                     /psig="0.0769230769230769"
                     /xcortree=50
                     /SigmaFactorBS="caacaatatatcctctttcgcttgtaaatctggtgttgatga
                     cataatttatttgggaaggaACGCAttgaaatttatctgcaatttcacttcgtttaat
                     c"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             101518..102075
                     /gene="mcsA"
                     /locus_tag="BSU_00840"
                     /old_locus_tag="BSU00840"
                     /function="16.3: Control"
                     /experiment="publication(s) with functional evidences,
                     PMID:16163393, 19189946, 24947607"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 16163393, 19189946,
                     24947607; Product type f: factor"
                     /codon_start=1
                     /transl_table=11
                     /product="activator of protein kinase McsB"
                     /protein_id="NP_387965.1"
                     /db_xref="EnsemblGenomes-Gn:BSU00840"
                     /db_xref="EnsemblGenomes-Tr:CAB11860"
                     /db_xref="GOA:P37569"
                     /db_xref="InterPro:IPR001943"
                     /db_xref="InterPro:IPR025542"
                     /db_xref="InterPro:IPR029037"
                     /db_xref="InterPro:IPR036876"
                     /db_xref="SubtiList:BG10146"
                     /db_xref="UniProtKB/Swiss-Prot:P37569"
                     /translation="MICQECHERPATFHFTKVVNGEKIEVHICEQCAKENSDSYGISA
                     NQGFSIHNLLSGLLNMDSSFQNAGTQMFSHSEQISACPKCGMTFQQFRKIGRFGCSEC
                     YKTFHSNITPILRKVHSGNTVHAGKIPKRIGGNLHVRRQIDMLKKELESLIHQEEFEN
                     AAHVRDQIRLLEQSLKSTDSEEEQE*"
                     /label="mcsA CDS"
     gene            101518..102075
                     /gene="mcsA"
                     /locus_tag="BSU_00840"
                     /old_locus_tag="BSU00840"
                     /label="mcsA gene"
     CDS             102075..103166
                     /gene="mcsB"
                     /locus_tag="BSU_00850"
                     /old_locus_tag="BSU00850"
                     /EC_number="2.7.3.3"
                     /function="16.3: Control"
                     /experiment="publication(s) with functional evidences,
                     PMID:16163393, 17380125, 19189946, 21622759, 25610436,
                     27749819"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 16163393, 17380125,
                     19189946, 21622759, 25610436, 27749819; Product type e :
                     enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="protein arginine kinase"
                     /protein_id="NP_387966.1"
                     /db_xref="EnsemblGenomes-Gn:BSU00850"
                     /db_xref="EnsemblGenomes-Tr:CAB11861"
                     /db_xref="GOA:P37570"
                     /db_xref="InterPro:IPR000749"
                     /db_xref="InterPro:IPR014746"
                     /db_xref="InterPro:IPR022414"
                     /db_xref="InterPro:IPR022415"
                     /db_xref="InterPro:IPR023660"
                     /db_xref="SubtiList:BG10147"
                     /db_xref="UniProtKB/Swiss-Prot:P37570"
                     /translation="MSLKHFIQDALSSWMKQKGPESDIVLSSRIRLARNFEHIRFPTR
                     YSNEEASSIIQQFEDQFSEQEIPGIGKFVLIRMNDAQPLEKRVLVEKHLISPNLTESP
                     FGGCLLSENEEVSVMLNEEDHIRIQCLFPGFQLLEAMKAANQVDDWIEEKVDYAFNEQ
                     RGYLTSCPTNVGTGLRASVMMHLPALVLTRQINRIIPAINQLGLVVRGIYGEGSEAVG
                     NIFQISNQITLGKSEQDIVEDLNSVAAQLIEQERSAREAIYQTSKIELEDRVYRSYGV
                     LSNCRMIESKETAKCLSDVRLGIDLGIIKGLSSNILNELMILTQPGFLQQYSGGALRP
                     NERDIRRAALIRERLHLEMNGKRQEDESI*"
                     /label="mcsB CDS"
     gene            102075..103166
                     /gene="mcsB"
                     /locus_tag="BSU_00850"
                     /old_locus_tag="BSU00850"
                     /label="mcsB gene"
     CDS             103163..105595
                     /gene="clpC"
                     /locus_tag="BSU_00860"
                     /old_locus_tag="BSU00860"
                     /function="16.6: Maintain"
                     /function="16.3: Control"
                     /experiment="publication(s) with functional evidences,
                     PMID:12354604, 15529410, 16525504, 26735940, 27749819"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 12354604, 15529410,
                     16525504, 26735940, 27749819; Product type f: factor"
                     /codon_start=1
                     /transl_table=11
                     /product="class III stress response-related ATPase, AAA+
                     superfamily"
                     /protein_id="NP_387967.1"
                     /db_xref="EnsemblGenomes-Gn:BSU00860"
                     /db_xref="EnsemblGenomes-Tr:CAB11862"
                     /db_xref="GOA:P37571"
                     /db_xref="InterPro:IPR001270"
                     /db_xref="InterPro:IPR001943"
                     /db_xref="InterPro:IPR003593"
                     /db_xref="InterPro:IPR003959"
                     /db_xref="InterPro:IPR004176"
                     /db_xref="InterPro:IPR018368"
                     /db_xref="InterPro:IPR019489"
                     /db_xref="InterPro:IPR027417"
                     /db_xref="InterPro:IPR028299"
                     /db_xref="InterPro:IPR036628"
                     /db_xref="PDB:2K77"
                     /db_xref="PDB:2Y1Q"
                     /db_xref="PDB:2Y1R"
                     /db_xref="PDB:3J3R"
                     /db_xref="PDB:3J3S"
                     /db_xref="PDB:3J3T"
                     /db_xref="PDB:3J3U"
                     /db_xref="PDB:3PXG"
                     /db_xref="PDB:3PXI"
                     /db_xref="PDB:5HBN"
                     /db_xref="SubtiList:BG10148"
                     /db_xref="UniProtKB/Swiss-Prot:P37571"
                     /translation="MMFGRFTERAQKVLALAQEEALRLGHNNIGTEHILLGLVREGEG
                     IAAKALQALGLGSEKIQKEVESLIGRGQEMSQTIHYTPRAKKVIELSMDEARKLGHSY
                     VGTEHILLGLIREGEGVAARVLNNLGVSLNKARQQVLQLLGSNETGSSAAGTNSNANT
                     PTLDSLARDLTAIAKEDSLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIA
                     EGLAQQIINNEVPEILRDKRVMTLDMGTVVAGTKYRGEFEDRLKKVMDEIRQAGNIIL
                     FIDELHTLIGAGGAEGAIDASNILKPSLARGELQCIGATTLDEYRKYIEKDAALERRF
                     QPIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPDKAI
                     DLIDEAGSKVRLRSFTTPPNLKELEQKLDEVRKEKDAAVQSQEFEKAASLRDTEQRLR
                     EQVEDTKKSWKEKQGQENSEVTVDDIAMVVSSWTGVPVSKIAQTETDKLLNMENILHS
                     RVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGDE
                     ESMIRIDMSEYMEKHSTSRLVGSPPGYVGYDEGGQLTEKVRRKPYSVVLLDEIEKAHP
                     DVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNVGASELKRNKYVGFNVQDETQNH
                     KDMKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHLTEIVSLMSDQLTKRLKEQDLS
                     IELTDAAKAKVAEEGVDLEYGARPLRRAIQKHVEDRLSEELLRGNIHKGQHIVLDVED
                     GEFVVKTTAKTN*"
                     /label="clpC CDS"
     gene            103163..105595
                     /gene="clpC"
                     /locus_tag="BSU_00860"
                     /old_locus_tag="BSU00860"
                     /label="clpC gene"
     downshifts      105590
                     /Source="Nicolas_upshifts"
                     /id="D38"
                     /incds=0
                     /nref=57
                     /ntot=245
                     /MaxReadThrough="6.69446"
                     /MaxDrop="4.4703"
                     /score="-8.32149463"
                     /energy="-11.7"
                     /TU="U80,U81"
                     /idTUdmin="U79"
                     /TUdmin="-1"
                     /isTUend="TRUE"
                     /label="downshifts"
     CDS             105687..107063
                     /gene="radA"
                     /locus_tag="BSU_00870"
                     /old_locus_tag="BSU00870"
                     /EC_number="2.1.1.63"
                     /function="16.6: Maintain"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 2b: Function from indirect experimental
                     evidences (e.g. phenotypes); PubMedId: 10931349, 11810266,
                     15317759, 25616256; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA repair protein; 6-O-methylguanine-DNA
                     methyltransferase"
                     /protein_id="NP_387968.1"
                     /db_xref="EnsemblGenomes-Gn:BSU00870"
                     /db_xref="EnsemblGenomes-Tr:CAB11863"
                     /db_xref="GOA:P37572"
                     /db_xref="InterPro:IPR003593"
                     /db_xref="InterPro:IPR004504"
                     /db_xref="InterPro:IPR014721"
                     /db_xref="InterPro:IPR020568"
                     /db_xref="InterPro:IPR020588"
                     /db_xref="InterPro:IPR027417"
                     /db_xref="SubtiList:BG10149"
                     /db_xref="UniProtKB/Swiss-Prot:P37572"
                     /translation="MAKTKSKFICQSCGYESPKWMGKCPGCGAWNTMVEEMIKKAPAN
                     RRAAFSHSVQTVQKPSPITSIETSEEPRVKTQLGEFNRVLGGGVVKGSLVLIGGDPGI
                     GKSTLLLQVSAQLSGSSNSVLYISGEESVKQTKLRADRLGINNPSLHVLSETDMEYIS
                     SAIQEMNPSFVVVDSIQTVYQSDITSAPGSVSQVRECTAELMKIAKTKGIPIFIVGHV
                     TKEGSIAGPRLLEHMVDTVLYFEGERHHTFRILRAVKNRFGSTNEMGIFEMREEGLTE
                     VLNPSEIFLEERSAGSAGSSITASMEGTRPILVEIQALISPTSFGNPRRMATGIDHNR
                     VSLLMAVLEKRVGLLLQNQDAYLKVAGGVKLDEPAIDLAIVISIASSFRDTPPNPADC
                     FIGEVGLTGEVRRVSRIEQRVKEAAKLGFKRMIIPAANLDGWTKPKGIEVIGVANVAE
                     ALRTSLGG*"
                     /label="radA CDS"
     gene            105687..107063
                     /gene="radA"
                     /locus_tag="BSU_00870"
                     /old_locus_tag="BSU00870"
                     /label="radA gene"
     promotor_-35    106142..106151
                     /Source="Nicolas_upshift_promotors"
                     /id="U83"
                     /multdbtbs="-"
                     /comp="M9"
                     /sig="SigWXY"
                     /pcomp=1
                     /psig=1
                     /xcortree=1648
                     /SigmaFactorBS="ctcggcattaataatccgtcactgcatgttttatcTGAAACC
                     GATatggagtatattTCGTCTGCTATACAAGagatgaatccatcgtttgtcgttgttg
                     a"
                     /listShort="disA, S45, yacL, ispD, ispF, gltX, S46, cysE,
                     cysS, mrnC, rlmB, yacP"
                     /listLong="sigH, S47, rpmGB, secE, S48, nusG, S49, rplK,
                     S50, rplA, NA, rplJ, rplL, ybxB, S51, rpoB, rpoC, S52,
                     rplGB, S53, rpsL, rpsG, fusA, S54, tufA, ybaC, S55, rpsJ,
                     rplC, rplD, rplW, rplB, rpsS, rplV, rpsC, rplP, rpmC,
                     rpsQ, rplNA, rplX, rplE, rpsNA, rpsH, rplF, rplR, rpsE,
                     rpmD, rplO, secY, adk, mapA, ybzG, infA, rpmJ, rpsM, rpsK,
                     S56, rpoA, rplQ, S57, ybxA, ybaE, ybaF, truA, NA, rplM,
                     rpsI, S59, ybaJ"
                     /label="promotor_-35"
     promotor_-10    106164..106179
                     /Source="Nicolas_upshift_promotors"
                     /id="U83"
                     /multdbtbs="-"
                     /comp="M9"
                     /sig="SigWXY"
                     /pcomp=1
                     /psig=1
                     /xcortree=1648
                     /SigmaFactorBS="ctcggcattaataatccgtcactgcatgttttatcTGAAACC
                     GATatggagtatattTCGTCTGCTATACAAGagatgaatccatcgtttgtcgttgttg
                     a"
                     /listShort="disA, S45, yacL, ispD, ispF, gltX, S46, cysE,
                     cysS, mrnC, rlmB, yacP"
                     /listLong="sigH, S47, rpmGB, secE, S48, nusG, S49, rplK,
                     S50, rplA, NA, rplJ, rplL, ybxB, S51, rpoB, rpoC, S52,
                     rplGB, S53, rpsL, rpsG, fusA, S54, tufA, ybaC, S55, rpsJ,
                     rplC, rplD, rplW, rplB, rpsS, rplV, rpsC, rplP, rpmC,
                     rpsQ, rplNA, rplX, rplE, rpsNA, rpsH, rplF, rplR, rpsE,
                     rpmD, rplO, secY, adk, mapA, ybzG, infA, rpmJ, rpsM, rpsK,
                     S56, rpoA, rplQ, S57, ybxA, ybaE, ybaF, truA, NA, rplM,
                     rpsI, S59, ybaJ"
                     /label="promotor_-10"
     upshifts        106167
                     /Source="Nicolas_upshifts"
                     /id="U83"
                     /multdbtbs="-"
                     /comp="M9"
                     /sig="SigWXY"
                     /pcomp=1
                     /psig=1
                     /xcortree=1648
                     /SigmaFactorBS="ctcggcattaataatccgtcactgcatgttttatcTGAAACC
                     GATatggagtatattTCGTCTGCTATACAAGagatgaatccatcgtttgtcgttgttg
                     a"
                     /listShort="disA, S45, yacL, ispD, ispF, gltX, S46, cysE,
                     cysS, mrnC, rlmB, yacP"
                     /listLong="sigH, S47, rpmGB, secE, S48, nusG, S49, rplK,
                     S50, rplA, NA, rplJ, rplL, ybxB, S51, rpoB, rpoC, S52,
                     rplGB, S53, rpsL, rpsG, fusA, S54, tufA, ybaC, S55, rpsJ,
                     rplC, rplD, rplW, rplB, rpsS, rplV, rpsC, rplP, rpmC,
                     rpsQ, rplNA, rplX, rplE, rpsNA, rpsH, rplF, rplR, rpsE,
                     rpmD, rplO, secY, adk, mapA, ybzG, infA, rpmJ, rpsM, rpsK,
                     S56, rpoA, rplQ, S57, ybxA, ybaE, ybaF, truA, NA, rplM,
                     rpsI, S59, ybaJ"
                     /label="upshifts"
     CDS             107067..108149
                     /gene="disA"
                     /locus_tag="BSU_00880"
                     /old_locus_tag="BSU00880"
                     /function="16.3: Control"
                     /function="16.6: Maintain"
                     /experiment="publication(s) with functional evidences,
                     PMID:16713562, 21566650, 24939848, 25616256, 27074767,
                     27150552, 28511132, 28961460"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 16713562, 21566650,
                     24939848, 25616256, 27074767, 27150552, 28511132,
                     28961460; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="diadenylate cyclase; DNA integrity scanning
                     protein; cell cycle checkpoint DNA scanning protein"
                     /protein_id="NP_387969.1"
                     /db_xref="EnsemblGenomes-Gn:BSU00880"
                     /db_xref="EnsemblGenomes-Tr:CAB11864"
                     /db_xref="GOA:P37573"
                     /db_xref="InterPro:IPR003390"
                     /db_xref="InterPro:IPR010994"
                     /db_xref="InterPro:IPR018906"
                     /db_xref="InterPro:IPR023763"
                     /db_xref="InterPro:IPR036888"
                     /db_xref="SubtiList:BG10150"
                     /db_xref="UniProtKB/Swiss-Prot:P37573"
                     /translation="MEKEKKGAKHELDLSSILQFVAPGTPLRAGMENVLRANTGGLIV
                     VGYNDKVKEVVDGGFHINTAFSPAHLYELAKMDGAIILSDSGQKILYANTQLMPDATI
                     SSSETGMRHRTAERVAKQTGCLVIAISERRNVITLYQENMKYTLKDIGFILTKANQAI
                     QTLEKYKTILDKTINALNALEFEELVTFSDVLSVMHRYEMVLRIKNEINMYIKELGTE
                     GHLIKLQVIELITDMEEEAALFIKDYVKEKIKDPFVLLKELQDMSSYDLLDDSIVYKL
                     LGYPASTNLDDYVLPRGYRLLNKIPRLPMPIVENVVEAFGVLPRIIEASAEELDEVEG
                     IGEVRAQKIKKGLKRLQEKHYLDRQL*"
                     /label="disA CDS"
     gene            107067..108149
                     /gene="disA"
                     /locus_tag="BSU_00880"
                     /old_locus_tag="BSU00880"
                     /label="disA gene"
     S_feature       108150..108264
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_108559_108673"
                     /HighExp="Etha, Salt, Heat, dia15, Diami, M9-stat, B60,
                     T-0.40H, T-1.10H, HiTm"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigWXY, SigA, SigB"
                     /TUshortPSig="1, 1, 1"
                     /TUlongSig="SigA"
                     /TUlongPSig="0.947"
                     /label="S45"
     CDS             108265..109365
                     /gene="yacL"
                     /locus_tag="BSU_00890"
                     /old_locus_tag="BSU00890"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 26999498; Product type
                     m: membrane component"
                     /codon_start=1
                     /transl_table=11
                     /product="putative membrane protein possibly involved in
                     RNA binding"
                     /protein_id="NP_387970.1"
                     /db_xref="EnsemblGenomes-Gn:BSU00890"
                     /db_xref="EnsemblGenomes-Tr:CAB11865"
                     /db_xref="GOA:Q06754"
                     /db_xref="InterPro:IPR002716"
                     /db_xref="InterPro:IPR002792"
                     /db_xref="InterPro:IPR029060"
                     /db_xref="SubtiList:BG10151"
                     /db_xref="UniProtKB/Swiss-Prot:Q06754"
                     /translation="MLKRIVQAFFIIFGGVVGIFLIPELFVLLNIQDIPLITNAYTSA
                     AIGAIIFFLISIWGTEYVVNWVKWIEDSLLKAPVPDLLFGSLGLVFGLIIAYLIVNVI
                     PLDNIPYRIFSTIIPVFLAFFLGYLGFQVGFKKKDELISLFSISARMQKKKGTADEEH
                     EVQDKKLKILDTSVIIDGRIADICQTGFLEGVIVIPQFVLEELQHIADSSDVLKRNRG
                     RRGLDILNRIQKELDIEVEIYEGDFEDIQEVDSKLVKLAKLTSGVVVTNDFNLNKVCE
                     LQKVAVLNINDLANAVKPVVLPGEEMNVQVIKDGKEHNQGVAYLDDGTMIVVEEGRNY
                     IGKHIDVLVTSVLQTAAGRMIFAKPKLLEKAL*"
                     /label="yacL CDS"
     gene            108265..109365
                     /gene="yacL"
                     /locus_tag="BSU_00890"
                     /old_locus_tag="BSU00890"
                     /label="yacL gene"
     downshifts      complement(109187)
                     /Source="Nicolas_upshifts"
                     /id="D39"
                     /incds=1
                     /nref=1
                     /ntot=103
                     /MaxReadThrough="0.39171"
                     /MaxDrop="2.87304"
                     /score="-9.71423487"
                     /energy="-11.8"
                     /TU="NA"
                     /idTUdmin="U82"
                     /TUdmin="-8228"
                     /isTUend="FALSE"
                     /label="downshifts"
     CDS             109380..110078
                     /gene="ispD"
                     /locus_tag="BSU_00900"
                     /old_locus_tag="BSU00900"
                     /EC_number="2.7.7.60"
                     /function="16.2: Construct biomass (Anabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:12682299, 15044829, 15379557, 16533036, 17081012,
                     17458547, 23840410, 27821871"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 12682299, 15044829,
                     15379557, 16533036, 17081012, 17458547, 23840410,
                     27821871; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="2-C-methyl-D-erythritol 4-phosphate
                     cytidylyltransferase, nonmevalonate isoprenoid pathway"
                     /protein_id="NP_387971.1"
                     /db_xref="EnsemblGenomes-Gn:BSU00900"
                     /db_xref="EnsemblGenomes-Tr:CAB11866"
                     /db_xref="GOA:Q06755"
                     /db_xref="InterPro:IPR001228"
                     /db_xref="InterPro:IPR018294"
                     /db_xref="InterPro:IPR029044"
                     /db_xref="InterPro:IPR034683"
                     /db_xref="PDB:5DDT"
                     /db_xref="PDB:5DDV"
                     /db_xref="PDB:5HS2"
                     /db_xref="SubtiList:BG10152"
                     /db_xref="UniProtKB/Swiss-Prot:Q06755"
                     /translation="MSYDVVIPAAGQGKRMKAGRNKLFIELKGDPVIIHTLRVFDSHR
                     QCDKIILVINEQEREHFQQLLSDYPFQTSIELVAGGDERQHSVYKGLKAVKQEKIVLV
                     HDGARPFIKHEQIDELIAEAEQTGAAILAVPVKDTIKRVQDLQVSETIERSSLWAVQT
                     PQAFRLSLLMKAHAEAERKGFLGTDDASLVEQMEGGSVRVVEGSYTNIKLTTPDDLTS
                     AEAIMESESGNKHV*"
                     /label="ispD CDS"
     gene            109380..110078
                     /gene="ispD"
                     /locus_tag="BSU_00900"
                     /old_locus_tag="BSU00900"
                     /label="ispD gene"
     CDS             110071..110547
                     /gene="ispF"
                     /locus_tag="BSU_00910"
                     /old_locus_tag="BSU00910"
                     /EC_number="4.6.1.12"
                     /function="16.2: Construct biomass (Anabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:9622350, 11997478, 12270818, 12682299, 17458547,
                     23840410"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 9622350, 11997478,
                     12270818, 12682299, 17458547, 23840410; Product type e :
                     enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="2-C-methyl-D-erythritol-2,4-cyclodiphosphate
                     synthase"
                     /protein_id="NP_387972.1"
                     /db_xref="EnsemblGenomes-Gn:BSU00910"
                     /db_xref="EnsemblGenomes-Tr:CAB11867"
                     /db_xref="GOA:Q06756"
                     /db_xref="InterPro:IPR003526"
                     /db_xref="InterPro:IPR020555"
                     /db_xref="InterPro:IPR036571"
                     /db_xref="PDB:5IWX"
                     /db_xref="PDB:5IWY"
                     /db_xref="SubtiList:BG10153"
                     /db_xref="UniProtKB/Swiss-Prot:Q06756"
                     /translation="MFRIGQGFDVHQLVEGRPLIIGGIEIPYEKGLLGHSDADVLLHT
                     VADACLGAVGEGDIGKHFPDTDPEFKDADSFKLLQHVWGIVKQKGYVLGNIDCTIIAQ
                     KPKMLPYIEDMRKRIAEGLEADVSQVNVKATTTEKLGFTGRAEGIAAQATVLIQKG*"
                     /label="ispF CDS"
     gene            110071..110547
                     /gene="ispF"
                     /locus_tag="BSU_00910"
                     /old_locus_tag="BSU00910"
                     /label="ispF gene"
     promotor_-35    110551..110558
                     /Source="Nicolas_upshift_promotors"
                     /id="U84"
                     /multdbtbs="SigA"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.606393606393606"
                     /psig="0.999000999001"
                     /xcortree=2679
                     /SigmaFactorBS="cagtactgatacaaaaaggctaacttGTTTTGATgccgggtc
                     tatttGGTGGTAGAATAGATTCATAcatttttgcctgaggccatacatgacatgaaag
                     g"
                     /listShort="gltX, S46, cysE, cysS, mrnC, rlmB, yacP, sigH,
                     S47, rpmGB, secE, S48, nusG"
                     /listLong="S49, rplK, S50, rplA, NA, rplJ, rplL, ybxB,
                     S51, rpoB, rpoC, S52, rplGB, S53, rpsL, rpsG, fusA, S54,
                     tufA, ybaC, S55, rpsJ, rplC, rplD, rplW, rplB, rpsS, rplV,
                     rpsC, rplP, rpmC, rpsQ, rplNA, rplX, rplE, rpsNA, rpsH,
                     rplF, rplR, rpsE, rpmD, rplO, secY, adk, mapA, ybzG, infA,
                     rpmJ, rpsM, rpsK, S56, rpoA, rplQ, S57, ybxA, ybaE, ybaF,
                     truA, NA, rplM, rpsI, S59, ybaJ"
                     /label="promotor_-35"
     promotor_-10    110572..110591
                     /Source="Nicolas_upshift_promotors"
                     /id="U84"
                     /multdbtbs="SigA"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.606393606393606"
                     /psig="0.999000999001"
                     /xcortree=2679
                     /SigmaFactorBS="cagtactgatacaaaaaggctaacttGTTTTGATgccgggtc
                     tatttGGTGGTAGAATAGATTCATAcatttttgcctgaggccatacatgacatgaaag
                     g"
                     /listShort="gltX, S46, cysE, cysS, mrnC, rlmB, yacP, sigH,
                     S47, rpmGB, secE, S48, nusG"
                     /listLong="S49, rplK, S50, rplA, NA, rplJ, rplL, ybxB,
                     S51, rpoB, rpoC, S52, rplGB, S53, rpsL, rpsG, fusA, S54,
                     tufA, ybaC, S55, rpsJ, rplC, rplD, rplW, rplB, rpsS, rplV,
                     rpsC, rplP, rpmC, rpsQ, rplNA, rplX, rplE, rpsNA, rpsH,
                     rplF, rplR, rpsE, rpmD, rplO, secY, adk, mapA, ybzG, infA,
                     rpmJ, rpsM, rpsK, S56, rpoA, rplQ, S57, ybxA, ybaE, ybaF,
                     truA, NA, rplM, rpsI, S59, ybaJ"
                     /label="promotor_-10"
     upshifts        110585
                     /Source="Nicolas_upshifts"
                     /id="U84"
                     /multdbtbs="SigA"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.606393606393606"
                     /psig="0.999000999001"
                     /xcortree=2679
                     /SigmaFactorBS="cagtactgatacaaaaaggctaacttGTTTTGATgccgggtc
                     tatttGGTGGTAGAATAGATTCATAcatttttgcctgaggccatacatgacatgaaag
                     g"
                     /listShort="gltX, S46, cysE, cysS, mrnC, rlmB, yacP, sigH,
                     S47, rpmGB, secE, S48, nusG"
                     /listLong="S49, rplK, S50, rplA, NA, rplJ, rplL, ybxB,
                     S51, rpoB, rpoC, S52, rplGB, S53, rpsL, rpsG, fusA, S54,
                     tufA, ybaC, S55, rpsJ, rplC, rplD, rplW, rplB, rpsS, rplV,
                     rpsC, rplP, rpmC, rpsQ, rplNA, rplX, rplE, rpsNA, rpsH,
                     rplF, rplR, rpsE, rpmD, rplO, secY, adk, mapA, ybzG, infA,
                     rpmJ, rpsM, rpsK, S56, rpoA, rplQ, S57, ybxA, ybaE, ybaF,
                     truA, NA, rplM, rpsI, S59, ybaJ"
                     /label="upshifts"
     CDS             110638..112089
                     /gene="gltX"
                     /locus_tag="BSU_00920"
                     /old_locus_tag="BSU00920"
                     /EC_number="6.1.1.24"
                     /EC_number="6.1.1.17"
                     /function="16.2: Construct biomass (Anabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:2120226, 3079749, 9342321, 10024179, 10546897,
                     12682299, 14741355"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 2120226, 3079749,
                     9342321, 10024179, 10546897, 12682299, 14741355; Product
                     type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamyl-tRNA synthetase"
                     /protein_id="NP_387973.1"
                     /db_xref="EnsemblGenomes-Gn:BSU00920"
                     /db_xref="EnsemblGenomes-Tr:CAB11868"
                     /db_xref="GOA:P22250"
                     /db_xref="InterPro:IPR000924"
                     /db_xref="InterPro:IPR001412"
                     /db_xref="InterPro:IPR004527"
                     /db_xref="InterPro:IPR008925"
                     /db_xref="InterPro:IPR014729"
                     /db_xref="InterPro:IPR020058"
                     /db_xref="InterPro:IPR020061"
                     /db_xref="InterPro:IPR020751"
                     /db_xref="InterPro:IPR020752"
                     /db_xref="InterPro:IPR033910"
                     /db_xref="SubtiList:BG10154"
                     /db_xref="UniProtKB/Swiss-Prot:P22250"
                     /translation="MGNEVRVRYAPSPTGHLHIGNARTALFNYLFARNQGGKFIIRVE
                     DTDKKRNIEGGEQSQLNYLKWLGIDWDESVDVGGEYGPYRQSERNDIYKVYYEELLEK
                     GLAYKCYCTEEELEKEREEQIARGEMPRYSGKHRDLTQEEQEKFIAEGRKPSIRFRVP
                     EGKVIAFNDIVKGEISFESDGIGDFVIVKKDGTPTYNFAVAIDDYLMKMTHVLRGEDH
                     ISNTPKQIMIYQAFGWDIPQFGHMTLIVNESRKKLSKRDESIIQFIEQYKELGYLPEA
                     LFNFIGLLGWSPVGEEELFTKEQFIEIFDVNRLSKSPALFDMHKLKWVNNQYVKKLDL
                     DQVVELTLPHLQKAGKVGTELSAEEQEWVRKLISLYHEQLSYGAEIVELTDLFFTDEI
                     EYNQEAKAVLEEEQVPEVLSTFAAKLEELEEFTPDNIKASIKAVQKETGHKGKKLFMP
                     IRVAVTGQTHGPELPQSIELIGKETAIQRLKNI*"
                     /label="gltX CDS"
     gene            110638..112089
                     /gene="gltX"
                     /locus_tag="BSU_00920"
                     /old_locus_tag="BSU00920"
                     /label="gltX gene"
     promotor_-35    111567..111576
                     /Source="Nicolas_upshift_promotors"
                     /id="U85"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp=1
                     /psig=1
                     /xcortree=1307
                     /SigmaFactorBS="agcagtttattgaaatttttgatgtaaatcgtttatcTAAAT
                     CACCAgctttgtttgataTGCATAAGCTAAAATGGGTTaacaaccaatatgtgaagaa
                     g"
                     /listShort="S46, cysE, cysS, mrnC, rlmB, yacP"
                     /listLong="sigH, S47, rpmGB, secE, S48, nusG, S49, rplK,
                     S50, rplA, NA, rplJ, rplL, ybxB, S51, rpoB, rpoC, S52,
                     rplGB, S53, rpsL, rpsG, fusA, S54, tufA"
                     /label="promotor_-35"
     promotor_-10    111590..111609
                     /Source="Nicolas_upshift_promotors"
                     /id="U85"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp=1
                     /psig=1
                     /xcortree=1307
                     /SigmaFactorBS="agcagtttattgaaatttttgatgtaaatcgtttatcTAAAT
                     CACCAgctttgtttgataTGCATAAGCTAAAATGGGTTaacaaccaatatgtgaagaa
                     g"
                     /listShort="S46, cysE, cysS, mrnC, rlmB, yacP"
                     /listLong="sigH, S47, rpmGB, secE, S48, nusG, S49, rplK,
                     S50, rplA, NA, rplJ, rplL, ybxB, S51, rpoB, rpoC, S52,
                     rplGB, S53, rpsL, rpsG, fusA, S54, tufA"
                     /label="promotor_-10"
     upshifts        111590
                     /Source="Nicolas_upshifts"
                     /id="U85"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp=1
                     /psig=1
                     /xcortree=1307
                     /SigmaFactorBS="agcagtttattgaaatttttgatgtaaatcgtttatcTAAAT
                     CACCAgctttgtttgataTGCATAAGCTAAAATGGGTTaacaaccaatatgtgaagaa
                     g"
                     /listShort="S46, cysE, cysS, mrnC, rlmB, yacP"
                     /listLong="sigH, S47, rpmGB, secE, S48, nusG, S49, rplK,
                     S50, rplA, NA, rplJ, rplL, ybxB, S51, rpoB, rpoC, S52,
                     rplGB, S53, rpsL, rpsG, fusA, S54, tufA"
                     /label="upshifts"
     S_feature       112090..112390
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_112499_112799"
                     /HighExp="S6, S8, S7, Diami, C90, LBGexp, G135, H2O2,
                     dia5, HiTm"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="0.17844199999999999"
                     /TUshortSig="SigK, SigA, SigWXY"
                     /TUshortPSig="1, 0.999, 1"
                     /TUlongSig="SigA, SigB, SigA"
                     /TUlongPSig="1, 1, 0.947"
                     /label="S46"
     CDS             112391..113044
                     /gene="cysE"
                     /locus_tag="BSU_00930"
                     /old_locus_tag="BSU00930"
                     /EC_number="2.3.1.30"
                     /function="16.2: Construct biomass (Anabolism)"
                     /function="16.3: Control"
                     /experiment="publication(s) with functional evidences,
                     PMID:7510287, 10737181, 10939241, 17056751, 18974048,
                     25731080"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 7510287, 10737181,
                     10939241, 17056751, 18974048, 25731080; Product type e :
                     enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="serine O-acetyltransferase"
                     /protein_id="NP_387974.1"
                     /db_xref="EnsemblGenomes-Gn:BSU00930"
                     /db_xref="EnsemblGenomes-Tr:CAB11869"
                     /db_xref="GOA:Q06750"
                     /db_xref="InterPro:IPR001451"
                     /db_xref="InterPro:IPR005881"
                     /db_xref="InterPro:IPR010493"
                     /db_xref="InterPro:IPR011004"
                     /db_xref="InterPro:IPR018357"
                     /db_xref="SubtiList:BG10155"
                     /db_xref="UniProtKB/Swiss-Prot:Q06750"
                     /translation="MFFRMLKEDIDTVFDQDPAARSYFEVILTYSGLHAIWAHRIAHA
                     LYKRKFYFLARLISQVSRFFTGIEIHPGATIGRRFFIDHGMGVVIGETCEIGNNVTVF
                     QGVTLGGTGKEKGKRHPTIKDDALIATGAKVLGSITVGEGSKIGAGSVVLHDVPDFST
                     VVGIPGRVVVQNGKKVRRDLNHQDLPDPVADRFKSLEQQILELKAELEDRKERINQK*
                     "
                     /label="cysE CDS"
     gene            112391..113044
                     /gene="cysE"
                     /locus_tag="BSU_00930"
                     /old_locus_tag="BSU00930"
                     /label="cysE gene"
     CDS             113041..114441
                     /gene="cysS"
                     /locus_tag="BSU_00940"
                     /old_locus_tag="BSU00940"
                     /EC_number="6.1.1.16"
                     /function="16.2: Construct biomass (Anabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:10024179, 10546897, 10931887, 12682299, 29079736"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 10024179, 10546897,
                     10931887, 12682299, 29079736; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="dual cysteinyl-tRNA synthetase; cysteine
                     persulfide synthase"
                     /protein_id="NP_387975.1"
                     /db_xref="EnsemblGenomes-Gn:BSU00940"
                     /db_xref="EnsemblGenomes-Tr:CAB11870"
                     /db_xref="GOA:Q06752"
                     /db_xref="InterPro:IPR009080"
                     /db_xref="InterPro:IPR014729"
                     /db_xref="InterPro:IPR015273"
                     /db_xref="InterPro:IPR015803"
                     /db_xref="InterPro:IPR024909"
                     /db_xref="InterPro:IPR032678"
                     /db_xref="SubtiList:BG10156"
                     /db_xref="UniProtKB/Swiss-Prot:Q06752"
                     /translation="MTITLYNTLTRQKETFVPLEEGKVKMYVCGPTVYNYIHIGNARP
                     AIVYDTVRNYLEYKGYDVQYVSNFTDVDDKLIKAANELGEDVPTISERFIKAYFEDVG
                     ALGCRKADLHPRVMENMDAIIEFVDQLVKKGYAYESEGDVYFKTRAFEGYGKLSQQSI
                     DELRSGARIRVGEKKEDALDFALWKAAKEGEISWDSPWGKGRPGWHIECSAMVKKYLG
                     DQIDIHAGGQDLTFPHHENEIAQSEALTGKTFAKYWLHNGYINIDNEKMSKSLGNFVL
                     VHDIIKQHDPQLLRFFMLSVHYRHPINYSEELLENTKSAFSRLKTAYSNLQHRLNSST
                     NLTEDDDQWLEKVEEHRKAFEEEMDDDFNTANAISVLFDLAKHANYYLQKDHTADHVI
                     TAFIEMFDRIVSVLGFSLGEQELLDQEIEDLIEKRNEARRNRDFALSDQIRDQLKSMN
                     IILEDTAQGTRWKRGE*"
                     /label="cysS CDS"
     gene            113041..114441
                     /gene="cysS"
                     /locus_tag="BSU_00940"
                     /old_locus_tag="BSU00940"
                     /label="cysS gene"
     CDS             114445..114876
                     /gene="mrnC"
                     /locus_tag="BSU_00950"
                     /old_locus_tag="BSU00950"
                     /function="16.6: Maintain"
                     /experiment="publication(s) with functional evidences,
                     PMID:16014871, 25634891, 27924926"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 16014871, 25634891,
                     27924926; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease for 23S RNA maturation, mini-RNase
                     III"
                     /protein_id="NP_387976.1"
                     /db_xref="EnsemblGenomes-Gn:BSU00950"
                     /db_xref="EnsemblGenomes-Tr:CAB11871"
                     /db_xref="GOA:O31418"
                     /db_xref="InterPro:IPR000999"
                     /db_xref="InterPro:IPR008226"
                     /db_xref="InterPro:IPR036389"
                     /db_xref="PDB:4OUN"
                     /db_xref="SubtiList:BG12702"
                     /db_xref="UniProtKB/Swiss-Prot:O31418"
                     /translation="MLEFDTIKDSKQLNGLALAYIGDAIFEVYVRHHLLKQGFTKPND
                     LHKKSSRIVSAKSQAEILFFLQNQSFFTEEEEAVLKRGRNAKSGTTPKNTDVQTYRYS
                     TAFEALLGYLFLEKKEERLSQLVAEAIQFGTSGRKTNESAT*"
                     /label="mrnC CDS"
     gene            114445..114876
                     /gene="mrnC"
                     /locus_tag="BSU_00950"
                     /old_locus_tag="BSU00950"
                     /label="mrnC gene"
     CDS             114860..115609
                     /gene="rlmB"
                     /locus_tag="BSU_00960"
                     /old_locus_tag="BSU00960"
                     /EC_number="2.1.1.185"
                     /function="16.2: Construct biomass (Anabolism)"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 2a: Function from experimental evidences
                     in other organisms; PubMedId: 11698387, 12377117,
                     16014871; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA (Gm2251)-methyltransferase"
                     /protein_id="NP_387977.1"
                     /db_xref="EnsemblGenomes-Gn:BSU00960"
                     /db_xref="EnsemblGenomes-Tr:CAB11872"
                     /db_xref="GOA:Q06753"
                     /db_xref="InterPro:IPR001537"
                     /db_xref="InterPro:IPR004441"
                     /db_xref="InterPro:IPR013123"
                     /db_xref="InterPro:IPR029026"
                     /db_xref="InterPro:IPR029028"
                     /db_xref="InterPro:IPR029064"
                     /db_xref="SubtiList:BG10157"
                     /db_xref="UniProtKB/Swiss-Prot:Q06753"
                     /translation="MSQQHDYVIGKNAVIETLKSDRKLYKLWMAENTVKGQAQQVIEL
                     AKKQGITIQYVPRKKLDQMVTGQHQGVVAQVAAYEYAELDDLYKAAEEKNEQPFFLIL
                     DELEDPHNLGSIMRTADAVGAHGIVIPKRRAVGLTTTVAKASTGAIEHIPVARVTNLA
                     RTLEEMKERGIWVVGTDASAREDFRNMDGNMPLALVIGSEGKGMGRLVKEKCDFLIKL
                     PMAGKVTSLNASVAAGLLMYEVYRKRNPVGE*"
                     /label="rlmB CDS"
     gene            114860..115609
                     /gene="rlmB"
                     /locus_tag="BSU_00960"
                     /old_locus_tag="BSU00960"
                     /label="rlmB gene"
     CDS             115616..116128
                     /gene="raeA"
                     /locus_tag="BSU_00970"
                     /old_locus_tag="BSU00970"
                     /function="16.11: Scavenge (Catabolism)"
                     /function="16.6: Maintain"
                     /experiment="publication(s) with functional evidences,
                     PMID:17114934, 23355615, 28363943"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 17114934, 23355615,
                     28363943; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome-dependent mRNA endonuclease"
                     /protein_id="NP_387978.1"
                     /db_xref="EnsemblGenomes-Gn:BSU00970"
                     /db_xref="EnsemblGenomes-Tr:CAB11873"
                     /db_xref="InterPro:IPR010298"
                     /db_xref="PDB:5MQ8"
                     /db_xref="PDB:5MQ9"
                     /db_xref="SubtiList:BG10158"
                     /db_xref="UniProtKB/Swiss-Prot:P37574"
                     /translation="MDILLVDGYNMIGAWPQLKDLKANSFEEARDVLIQKMAEYQSYT
                     GNRVIVVFDAHLVKGLEKKQTNHRVEVIFTKENETADERIEKLAQALNNIATQIHVAT
                     SDYTEQWAIFGQGALRKSARELLREVETIERRIERRVRKITSEKPAGKIALSEEVLKT
                     FEKWRRGDLD*"
                     /label="raeA CDS"
     gene            115616..116128
                     /gene="raeA"
                     /locus_tag="BSU_00970"
                     /old_locus_tag="BSU00970"
                     /label="raeA gene"
     promotor_-35    116127..116134
                     /Source="Nicolas_upshift_promotors"
                     /id="U86"
                     /multdbtbs="SigA"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.71028971028971"
                     /psig=1
                     /xcortree=3212
                     /SigmaFactorBS="aaacgtttgaaaagtggaggcggggagacttagattAAGTTG
                     ACgcttttttgcccaaTACTGTATAATATTTCTATCtacgtgcgccggggggatcgga
                     g"
                     /listShort="sigH, S47, rpmGB, secE, S48, nusG"
                     /listLong="S49, rplK, S50, rplA, NA, rplJ, rplL, ybxB,
                     S51, rpoB, rpoC, S52, rplGB, S53, rpsL, rpsG, fusA, S54,
                     tufA, ybaC, S55, rpsJ, rplC, rplD, rplW, rplB, rpsS, rplV,
                     rpsC, rplP, rpmC, rpsQ, rplNA, rplX, rplE, rpsNA, rpsH,
                     rplF, rplR, rpsE, rpmD, rplO, secY, adk, mapA, ybzG, infA,
                     rpmJ, rpsM, rpsK, S56, rpoA, rplQ, S57, ybxA, ybaE, ybaF,
                     truA, NA, rplM, rpsI, S59, ybaJ"
                     /label="promotor_-35"
     promotor_-10    116149..116168
                     /Source="Nicolas_upshift_promotors"
                     /id="U86"
                     /multdbtbs="SigA"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.71028971028971"
                     /psig=1
                     /xcortree=3212
                     /SigmaFactorBS="aaacgtttgaaaagtggaggcggggagacttagattAAGTTG
                     ACgcttttttgcccaaTACTGTATAATATTTCTATCtacgtgcgccggggggatcgga
                     g"
                     /listShort="sigH, S47, rpmGB, secE, S48, nusG"
                     /listLong="S49, rplK, S50, rplA, NA, rplJ, rplL, ybxB,
                     S51, rpoB, rpoC, S52, rplGB, S53, rpsL, rpsG, fusA, S54,
                     tufA, ybaC, S55, rpsJ, rplC, rplD, rplW, rplB, rpsS, rplV,
                     rpsC, rplP, rpmC, rpsQ, rplNA, rplX, rplE, rpsNA, rpsH,
                     rplF, rplR, rpsE, rpmD, rplO, secY, adk, mapA, ybzG, infA,
                     rpmJ, rpsM, rpsK, S56, rpoA, rplQ, S57, ybxA, ybaE, ybaF,
                     truA, NA, rplM, rpsI, S59, ybaJ"
                     /label="promotor_-10"
     upshifts        116151
                     /Source="Nicolas_upshifts"
                     /id="U86"
                     /multdbtbs="SigA"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.71028971028971"
                     /psig=1
                     /xcortree=3212
                     /SigmaFactorBS="aaacgtttgaaaagtggaggcggggagacttagattAAGTTG
                     ACgcttttttgcccaaTACTGTATAATATTTCTATCtacgtgcgccggggggatcgga
                     g"
                     /listShort="sigH, S47, rpmGB, secE, S48, nusG"
                     /listLong="S49, rplK, S50, rplA, NA, rplJ, rplL, ybxB,
                     S51, rpoB, rpoC, S52, rplGB, S53, rpsL, rpsG, fusA, S54,
                     tufA, ybaC, S55, rpsJ, rplC, rplD, rplW, rplB, rpsS, rplV,
                     rpsC, rplP, rpmC, rpsQ, rplNA, rplX, rplE, rpsNA, rpsH,
                     rplF, rplR, rpsE, rpmD, rplO, secY, adk, mapA, ybzG, infA,
                     rpmJ, rpsM, rpsK, S56, rpoA, rplQ, S57, ybxA, ybaE, ybaF,
                     truA, NA, rplM, rpsI, S59, ybaJ"
                     /label="upshifts"
     CDS             116191..116847
                     /gene="sigH"
                     /locus_tag="BSU_00980"
                     /old_locus_tag="BSU00980"
                     /function="16.3: Control"
                     /experiment="publication(s) with functional evidences,
                     PMID:12169614, 16339734, 25288929, 26712348"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 12169614, 16339734,
                     25288929, 26712348; Product type f: factor"
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase sigma-30 factor (sigma(H))"
                     /protein_id="NP_387979.1"
                     /db_xref="EnsemblGenomes-Gn:BSU00980"
                     /db_xref="EnsemblGenomes-Tr:CAB11874"
                     /db_xref="GOA:P17869"
                     /db_xref="InterPro:IPR000792"
                     /db_xref="InterPro:IPR000943"
                     /db_xref="InterPro:IPR007627"
                     /db_xref="InterPro:IPR013249"
                     /db_xref="InterPro:IPR013324"
                     /db_xref="InterPro:IPR013325"
                     /db_xref="InterPro:IPR014218"
                     /db_xref="InterPro:IPR014284"
                     /db_xref="InterPro:IPR016371"
                     /db_xref="InterPro:IPR036388"
                     /db_xref="SubtiList:BG10159"
                     /db_xref="UniProtKB/Swiss-Prot:P17869"
                     /translation="MNLQNNKGKFNKEQFCQLEDEQVIEKVHVGDSDALDYLITKYRN
                     FVRAKARSYFLIGADREDIVQEGMIGLYKSIRDFKEDKLTSFKAFAELCITRQIITAI
                     KTATRQKHIPLNSYASLDKPIFDEESDRTLLDVISGAKTLNPEEMIINQEEFDDIEMK
                     MGELLSDLERKVLVLYLDGRSYQEISDELNRHVKSIDNALQRVKRKLEKYLEIREISL
                     *"
                     /label="sigH CDS"
     gene            116191..116847
                     /gene="sigH"
                     /locus_tag="BSU_00980"
                     /old_locus_tag="BSU00980"
                     /label="sigH gene"
     downshifts      complement(116645)
                     /Source="Nicolas_upshifts"
                     /id="D40"
                     /incds=1
                     /nref=1
                     /ntot=107
                     /MaxReadThrough="2.38622"
                     /MaxDrop="2.50464"
                     /score="-2.56993398"
                     /energy="-10.3"
                     /TU="NA"
                     /idTUdmin="U87"
                     /TUdmin=836
                     /isTUend="FALSE"
                     /label="downshifts"
     S_feature       116848..116939
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_117257_117348"
                     /HighExp="T4.0H, T3.30H, T3.0H, T2.30H, S1, S2, T5.0H,
                     HiOs, T2.0H, T1.30H"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA, SigA"
                     /TUshortPSig="1, 0.999"
                     /TUlongSig="SigK, SigWXY, SigA, SigB, SigA"
                     /TUlongPSig="1, 1, 1, 1, 0.947"
                     /label="S47"
     CDS             116940..117089
                     /gene="rpmGB"
                     /locus_tag="BSU_00990"
                     /old_locus_tag="BSU00990"
                     /function="16.2: Construct biomass (Anabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:12682299, 14586115, 19648245, 23002217, 27561249"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 12682299, 14586115,
                     19648245, 23002217, 27561249; Product type f: factor"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosomal protein L33"
                     /protein_id="NP_387980.1"
                     /db_xref="EnsemblGenomes-Gn:BSU00990"
                     /db_xref="EnsemblGenomes-Tr:CAB11875"
                     /db_xref="GOA:Q06798"
                     /db_xref="InterPro:IPR001705"
                     /db_xref="InterPro:IPR011332"
                     /db_xref="InterPro:IPR018264"
                     /db_xref="SubtiList:BG10160"
                     /db_xref="UniProtKB/Swiss-Prot:Q06798"
                     /translation="MRKKITLACKTCGNRNYTTMKSSASAAERLEVKKYCSTCNSHTA
                     HLETK*"
                     /label="rpmGB CDS"
     gene            116940..117089
                     /gene="rpmGB"
                     /locus_tag="BSU_00990"
                     /old_locus_tag="BSU00990"
                     /label="rpmGB gene"
     CDS             117123..117302
                     /gene="secE"
                     /locus_tag="BSU_01000"
                     /old_locus_tag="BSU01000"
                     /function="16.1: Circulate"
                     /experiment="publication(s) with functional evidences,
                     PMID:11976315, 12682299, 16242710, 22304380, 22720735"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 11976315, 12682299,
                     16242710, 22304380, 22720735; Product type t :
                     transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit"
                     /protein_id="NP_387981.1"
                     /db_xref="EnsemblGenomes-Gn:BSU01000"
                     /db_xref="EnsemblGenomes-Tr:CAB11876"
                     /db_xref="GOA:Q06799"
                     /db_xref="InterPro:IPR001901"
                     /db_xref="InterPro:IPR005807"
                     /db_xref="InterPro:IPR022943"
                     /db_xref="SubtiList:BG10161"
                     /db_xref="UniProtKB/Swiss-Prot:Q06799"
                     /translation="MRIMKFFKDVGKEMKKVSWPKGKELTRYTITVISTVIFFVIFFA
                     LLDTGISQLIRLIVE*"
                     /label="secE CDS"
     gene            117123..117302
                     /gene="secE"
                     /locus_tag="BSU_01000"
                     /old_locus_tag="BSU01000"
                     /label="secE gene"
     S_feature       117303..117480
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_117712_117889"
                     /HighExp="Cold, G180, G150, H2O2, LoTm, Oxctl, G135,
                     Paraq, LBGexp, Lbexp"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA, SigA"
                     /TUshortPSig="1, 0.999"
                     /TUlongSig="SigK, SigWXY, SigA, SigB, SigA"
                     /TUlongPSig="1, 1, 1, 1, 0.947"
                     /label="S48"
     downshifts      complement(117474)
                     /Source="Nicolas_upshifts"
                     /id="D41"
                     /incds=0
                     /nref=37
                     /ntot=175
                     /MaxReadThrough="1.57397"
                     /MaxDrop="4.03552"
                     /score="-2.56993398"
                     /energy="-10.3"
                     /TU="NA"
                     /idTUdmin="U87"
                     /TUdmin=7
                     /isTUend="TRUE"
                     /label="downshifts"
     CDS             117481..118014
                     /gene="nusG"
                     /locus_tag="BSU_01010"
                     /old_locus_tag="BSU01010"
                     /function="16.3: Control"
                     /function="16.2: Construct biomass (Anabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:11101662, 16014871, 16707701, 18852477, 26742846,
                     28507243"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 11101662, 16014871,
                     16707701, 18852477, 26742846, 28507243; Product type f :
                     factor"
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase elongation pause factor"
                     /protein_id="NP_387982.1"
                     /db_xref="EnsemblGenomes-Gn:BSU01010"
                     /db_xref="EnsemblGenomes-Tr:CAB11877"
                     /db_xref="GOA:Q06795"
                     /db_xref="InterPro:IPR001062"
                     /db_xref="InterPro:IPR005824"
                     /db_xref="InterPro:IPR006645"
                     /db_xref="InterPro:IPR008991"
                     /db_xref="InterPro:IPR014722"
                     /db_xref="InterPro:IPR015869"
                     /db_xref="InterPro:IPR036735"
                     /db_xref="SubtiList:BG10162"
                     /db_xref="UniProtKB/Swiss-Prot:Q06795"
                     /translation="MEKNWYVVHTYSGYENKVKANLEKRVESMGMQDKIFRVVVPEEE
                     ETDIKNGKKKVVKKKVFPGYVLVEIVMTDDSWYVVRNTPGVTGFVGSAGSGSKPTPLL
                     PGEAETILKRMGMDERKTDIDFELKETVKVIDGPFANFTGSIEEIDYDKSKVKVFVNM
                     FGRETPVELEFTQIDKL*"
                     /label="nusG CDS"
     gene            117481..118014
                     /gene="nusG"
                     /locus_tag="BSU_01010"
                     /old_locus_tag="BSU01010"
                     /label="nusG gene"
     upshifts        complement(117569)
                     /Source="Nicolas_upshifts"
                     /id="U87"
                     /multdbtbs="-"
                     /comp="M13"
                     /sig="Sig-"
                     /pcomp="0.98001998001998"
                     /psig="0.002997002997003"
                     /xcortree=29
                     /SigmaFactorBS="tttttgatatccgtttcttcttcttcgggtacgACTACAcgg
                     aaaattttatcCTGCAtccccattgattcaacacgcttttccaagttggcttttactt
                     t"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-10    complement(117572..117576)
                     /Source="Nicolas_upshift_promotors"
                     /id="U87"
                     /multdbtbs="-"
                     /comp="M13"
                     /sig="Sig-"
                     /pcomp="0.98001998001998"
                     /psig="0.002997002997003"
                     /xcortree=29
                     /SigmaFactorBS="tttttgatatccgtttcttcttcttcgggtacgACTACAcgg
                     aaaattttatcCTGCAtccccattgattcaacacgcttttccaagttggcttttactt
                     t"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     promotor_-35    complement(117591..117596)
                     /Source="Nicolas_upshift_promotors"
                     /id="U87"
                     /multdbtbs="-"
                     /comp="M13"
                     /sig="Sig-"
                     /pcomp="0.98001998001998"
                     /psig="0.002997002997003"
                     /xcortree=29
                     /SigmaFactorBS="tttttgatatccgtttcttcttcttcgggtacgACTACAcgg
                     aaaattttatcCTGCAtccccattgattcaacacgcttttccaagttggcttttactt
                     t"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-35    118025..118032
                     /Source="Nicolas_upshift_promotors"
                     /id="U88"
                     /multdbtbs="-"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp="0.787212787212787"
                     /psig=1
                     /xcortree=2652
                     /SigmaFactorBS="agctggaatttacccaaatcgataaattgtaatgtgaaaaaa
                     CTTGAAATtgctatatataaaTGATAATATAGCAAAGGTACgtcttggacttatccaa
                     g"
                     /listShort="S49, rplK, S50, rplA, NA, rplJ, rplL, ybxB,
                     S51, rpoB, rpoC, S52, rplGB, S53, rpsL, rpsG, fusA, S54,
                     tufA, ybaC"
                     /listLong="S55, rpsJ, rplC, rplD, rplW, rplB, rpsS, rplV,
                     rpsC, rplP, rpmC, rpsQ, rplNA, rplX, rplE, rpsNA, rpsH,
                     rplF, rplR, rpsE, rpmD, rplO, secY, adk, mapA, ybzG, infA,
                     rpmJ, rpsM, rpsK, S56, rpoA, rplQ, S57, ybxA, ybaE, ybaF,
                     truA, NA, rplM, rpsI, S59, ybaJ"
                     /label="promotor_-35"
     S_feature       118043..118181
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_118452_118590"
                     /HighExp="T-1.40H, ferm, T-3.40H, T-5.40H, BI, B36, LoTm,
                     SMM, T-2.40H, nit"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig=1
                     /TUlongSig="SigA, SigK, SigA, SigWXY, SigA, SigB, SigA"
                     /TUlongPSig="1, 1, 0.999, 1, 1, 1, 0.947"
                     /label="S49"
     upshifts        118043
                     /Source="Nicolas_upshifts"
                     /id="U88"
                     /multdbtbs="-"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp="0.787212787212787"
                     /psig=1
                     /xcortree=2652
                     /SigmaFactorBS="agctggaatttacccaaatcgataaattgtaatgtgaaaaaa
                     CTTGAAATtgctatatataaaTGATAATATAGCAAAGGTACgtcttggacttatccaa
                     g"
                     /listShort="S49, rplK, S50, rplA, NA, rplJ, rplL, ybxB,
                     S51, rpoB, rpoC, S52, rplGB, S53, rpsL, rpsG, fusA, S54,
                     tufA, ybaC"
                     /listLong="S55, rpsJ, rplC, rplD, rplW, rplB, rpsS, rplV,
                     rpsC, rplP, rpmC, rpsQ, rplNA, rplX, rplE, rpsNA, rpsH,
                     rplF, rplR, rpsE, rpmD, rplO, secY, adk, mapA, ybzG, infA,
                     rpmJ, rpsM, rpsK, S56, rpoA, rplQ, S57, ybxA, ybaE, ybaF,
                     truA, NA, rplM, rpsI, S59, ybaJ"
                     /label="upshifts"
     promotor_-10    118046..118065
                     /Source="Nicolas_upshift_promotors"
                     /id="U88"
                     /multdbtbs="-"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp="0.787212787212787"
                     /psig=1
                     /xcortree=2652
                     /SigmaFactorBS="agctggaatttacccaaatcgataaattgtaatgtgaaaaaa
                     CTTGAAATtgctatatataaaTGATAATATAGCAAAGGTACgtcttggacttatccaa
                     g"
                     /listShort="S49, rplK, S50, rplA, NA, rplJ, rplL, ybxB,
                     S51, rpoB, rpoC, S52, rplGB, S53, rpsL, rpsG, fusA, S54,
                     tufA, ybaC"
                     /listLong="S55, rpsJ, rplC, rplD, rplW, rplB, rpsS, rplV,
                     rpsC, rplP, rpmC, rpsQ, rplNA, rplX, rplE, rpsNA, rpsH,
                     rplF, rplR, rpsE, rpmD, rplO, secY, adk, mapA, ybzG, infA,
                     rpmJ, rpsM, rpsK, S56, rpoA, rplQ, S57, ybxA, ybaE, ybaF,
                     truA, NA, rplM, rpsI, S59, ybaJ"
                     /label="promotor_-10"
     CDS             118182..118607
                     /gene="rplK"
                     /locus_tag="BSU_01020"
                     /old_locus_tag="BSU01020"
                     /function="16.2: Construct biomass (Anabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:11244072, 19653700, 20441189"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 11244072, 19653700,
                     20441189; Product type s: structure"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosomal protein L11 (BL11)"
                     /protein_id="NP_387983.2"
                     /db_xref="EnsemblGenomes-Gn:BSU01020"
                     /db_xref="EnsemblGenomes-Tr:CAB11878"
                     /db_xref="GOA:Q06796"
                     /db_xref="InterPro:IPR000911"
                     /db_xref="InterPro:IPR006519"
                     /db_xref="InterPro:IPR020783"
                     /db_xref="InterPro:IPR020784"
                     /db_xref="InterPro:IPR020785"
                     /db_xref="InterPro:IPR036769"
                     /db_xref="InterPro:IPR036796"
                     /db_xref="PDB:3J3V"
                     /db_xref="PDB:3J3W"
                     /db_xref="PDB:3J9W"
                     /db_xref="SubtiList:BG10163"
                     /db_xref="UniProtKB/Swiss-Prot:Q06796"
                     /translation="MAKKVVKVVKLQIPAGKANPAPPVGPALGQAGVNIMGFCKEFNA
                     RTADQAGLIIPVEISVYEDRSFTFITKTPPAAVLLKKAAGIESGSGEPNRNKVATVKR
                     DKVREIAETKMPDLNAADVEAAMRMVEGTARSMGIVIED*"
                     /label="rplK CDS"
     gene            118182..118607
                     /gene="rplK"
                     /locus_tag="BSU_01020"
                     /old_locus_tag="BSU01020"
                     /label="rplK gene"
     S_feature       118608..118701
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_119017_119110"
                     /HighExp="HPh, LPh, Lbexp, G180, LBGexp, G150, Heat, Cold,
                     Fru, Oxctl"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig=1
                     /TUlongSig="SigA, SigK, SigA, SigWXY, SigA, SigB, SigA"
                     /TUlongPSig="1, 1, 0.999, 1, 1, 1, 0.947"
                     /label="S50"
     CDS             118702..119400
                     /gene="rplA"
                     /locus_tag="BSU_01030"
                     /old_locus_tag="BSU01030"
                     /function="16.2: Construct biomass (Anabolism)"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 2a: Function from experimental evidences
                     in other organisms; PubMedId: 12682299, 16352840,
                     17981968, 22720735; Product type s: structure"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosomal protein L1 (BL1)"
                     /protein_id="NP_387984.2"
                     /db_xref="EnsemblGenomes-Gn:BSU01030"
                     /db_xref="EnsemblGenomes-Tr:CAB11879"
                     /db_xref="GOA:Q06797"
                     /db_xref="InterPro:IPR002143"
                     /db_xref="InterPro:IPR005878"
                     /db_xref="InterPro:IPR016095"
                     /db_xref="InterPro:IPR023673"
                     /db_xref="InterPro:IPR023674"
                     /db_xref="InterPro:IPR028364"
                     /db_xref="PDB:3J3V"
                     /db_xref="PDB:3J3W"
                     /db_xref="SubtiList:BG10164"
                     /db_xref="UniProtKB/Swiss-Prot:Q06797"
                     /translation="MAKKGKKYVEAAKLVDRSKAYDVSEAVALVKKTNTAKFDATVEV
                     AFRLGVDPRKNDQQIRGAVVLPNGTGKTQRVLVFAKGEKAKEAEAAGADFVGDTDYIN
                     KIQQGWFDFDVIVATPDMMGEVGKIGRVLGPKGLMPNPKTGTVTFEVEKAIGEIKAGK
                     VEYRVDKAGNIHVPIGKVSFEDEKLVENFTTMYDTILKAKPAAAKGVYVKNVAVTSTM
                     GPGVKVDSSTFNVK*"
                     /label="rplA CDS"
     gene            118702..119400
                     /gene="rplA"
                     /locus_tag="BSU_01030"
                     /old_locus_tag="BSU01030"
                     /label="rplA gene"
     downshifts      complement(119374)
                     /Source="Nicolas_upshifts"
                     /id="D42"
                     /incds=0
                     /nref=3
                     /ntot=95
                     /MaxReadThrough="3.54108"
                     /MaxDrop="3.36566"
                     /score="-2.56993398"
                     /energy="-10.3"
                     /TU="NA"
                     /idTUdmin="U89"
                     /TUdmin=0
                     /isTUend="TRUE"
                     /label="downshifts"
     misc_RNA        119446..119586
                     /gene="ldlJ"
                     /locus_tag="BSU_misc_RNA_3"
                     /product="L10_leader"
                     /experiment="publication(s) with functional evidences,
                     PMID:26101249"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 26101249; Product type n:
                     RNA"
                     /label="ldlJ RNA"
     gene            119446..119586
                     /gene="ldlJ"
                     /locus_tag="BSU_misc_RNA_3"
                     /label="ldlJ gene"
     upshifts        complement(119462)
                     /Source="Nicolas_upshifts"
                     /id="U89"
                     /multdbtbs="-"
                     /comp="M13"
                     /sig="Sig-"
                     /pcomp="0.603396603396603"
                     /psig="0.248751248751249"
                     /xcortree=60
                     /SigmaFactorBS="gctgtgataatatacacctcggtaggataattaagcggttag
                     gcccctactgtCTACGgtataaatgatattctattttacaacattttgaataatatca
                     g"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     misc_feature    complement(119465..119469)
                     /Source="Nicolas_upshift_promotors"
                     /id="U89"
                     /multdbtbs="-"
                     /comp="M13"
                     /sig="Sig-"
                     /pcomp="0.603396603396603"
                     /psig="0.248751248751249"
                     /xcortree=60
                     /SigmaFactorBS="gctgtgataatatacacctcggtaggataattaagcggttag
                     gcccctactgtCTACGgtataaatgatattctattttacaacattttgaataatatca
                     g"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_single_box"
                     /note="Geneious type: promotor_single_box"
     downshifts      119518
                     /Source="Nicolas_upshifts"
                     /id="D43"
                     /incds=1
                     /nref=1
                     /ntot=19
                     /MaxReadThrough="9.14839"
                     /MaxDrop="2.9211"
                     /score="20.0562348"
                     /energy="-13.2"
                     /TU="U88"
                     /idTUdmin="U84"
                     /TUdmin=1497
                     /isTUend="FALSE"
                     /label="downshifts"
     CDS             119652..120152
                     /gene="rplJ"
                     /locus_tag="BSU_01040"
                     /old_locus_tag="BSU01040"
                     /function="16.2: Construct biomass (Anabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:9810686, 11341315, 12682299, 18247578, 26101249,
                     22720735"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 9810686, 11341315,
                     12682299, 18247578, 26101249, 22720735; Product type s :
                     structure"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosomal protein L10 (BL5)"
                     /protein_id="NP_387985.2"
                     /db_xref="EnsemblGenomes-Gn:BSU01040"
                     /db_xref="EnsemblGenomes-Tr:CAB11880"
                     /db_xref="GOA:P42923"
                     /db_xref="InterPro:IPR001790"
                     /db_xref="InterPro:IPR002363"
                     /db_xref="InterPro:IPR022973"
                     /db_xref="PDB:3J9W"
                     /db_xref="PDB:5NJT"
                     /db_xref="SubtiList:BG11220"
                     /db_xref="UniProtKB/Swiss-Prot:P42923"
                     /translation="MSSAIETKKVVVEEIASKLKESKSTIIVDYRGLNVSEVTELRKQ
                     LREANVEFKVYKNTMTRRAVEQAELNGLNDFLTGPNAIAFSTEDVVAPAKVLNDFAKN
                     HEALEIKAGVIEGKVSTVEEVKALAELPSREGLLSMLLSVLQAPVRNLALAAKAVAEQ
                     KEEQGA*"
                     /label="rplJ CDS"
     gene            119652..120152
                     /gene="rplJ"
                     /locus_tag="BSU_01040"
                     /old_locus_tag="BSU01040"
                     /label="rplJ gene"
     CDS             120198..120569
                     /gene="rplL"
                     /locus_tag="BSU_01050"
                     /old_locus_tag="BSU01050"
                     /function="16.2: Construct biomass (Anabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:12682299, 6771249, 8755892, 26101249"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 12682299, 6771249,
                     8755892, 26101249; Product type s: structure"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosomal protein L12 (BL9)"
                     /protein_id="NP_387986.1"
                     /db_xref="EnsemblGenomes-Gn:BSU01050"
                     /db_xref="EnsemblGenomes-Tr:CAB11881"
                     /db_xref="GOA:P02394"
                     /db_xref="InterPro:IPR000206"
                     /db_xref="InterPro:IPR008932"
                     /db_xref="InterPro:IPR013823"
                     /db_xref="InterPro:IPR014719"
                     /db_xref="InterPro:IPR036235"
                     /db_xref="SubtiList:BG10726"
                     /db_xref="UniProtKB/Swiss-Prot:P02394"
                     /translation="MALNIEEIIASVKEATVLELNDLVKAIEEEFGVTAAAPVAVAGG
                     AAAGGAAEEQSEFDLILAGAGSQKIKVIKVVREITGLGLKEAKELVDNTPKPLKEGIA
                     KEEAEELKAKLEEVGASVEVK*"
                     /label="rplL CDS"
     gene            120198..120569
                     /gene="rplL"
                     /locus_tag="BSU_01050"
                     /old_locus_tag="BSU01050"
                     /label="rplL gene"
     downshifts      120485
                     /Source="Nicolas_upshifts"
                     /id="D44"
                     /incds=1
                     /nref=5
                     /ntot=149
                     /MaxReadThrough="8.89506"
                     /MaxDrop="4.0945"
                     /score="20.6066659"
                     /energy="-11.7"
                     /TU="U88"
                     /idTUdmin="U84"
                     /TUdmin=2464
                     /isTUend="FALSE"
                     /label="downshifts"
     downshifts      120558
                     /Source="Nicolas_upshifts"
                     /id="D45"
                     /incds=0
                     /nref=25
                     /ntot=157
                     /MaxReadThrough="7.44654"
                     /MaxDrop="4.0033"
                     /score="20.6066659"
                     /energy="-11.7"
                     /TU="U88"
                     /idTUdmin="U84"
                     /TUdmin=2537
                     /isTUend="FALSE"
                     /label="downshifts"
     CDS             120659..121264
                     /gene="rlmG"
                     /locus_tag="BSU_01060"
                     /old_locus_tag="BSU01060"
                     /EC_number="2.1.1.174"
                     /function="16.6: Maintain"
                     /function="16.8: Protect"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 2a: Function from experimental evidences
                     in other organisms; PubMedId: 17010380; Product type e :
                     enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA m2G1835 methyltransferase"
                     /protein_id="NP_387987.1"
                     /db_xref="EnsemblGenomes-Gn:BSU01060"
                     /db_xref="EnsemblGenomes-Tr:CAB11882"
                     /db_xref="GOA:P37872"
                     /db_xref="InterPro:IPR007848"
                     /db_xref="InterPro:IPR029063"
                     /db_xref="SubtiList:BG10727"
                     /db_xref="UniProtKB/Swiss-Prot:P37872"
                     /translation="MSEHYYSEKPSVKSNKQTWSFRLRNKDFTFTSDSGVFSKKEVDF
                     GSRLLIDSFEEPEVEGGILDVGCGYGPIGLSLASDFKDRTIHMIDVNERAVELSNENA
                     EQNGITNVKIYQSDLFSNVDSAQTFASILTNPPIRAGKKVVHAIFEKSAEHLKASGEL
                     WIVIQKKQGAPSAIEKLEELFDEVSVVQKKKGYYIIKAKKV*"
                     /label="rlmG CDS"
     gene            120659..121264
                     /gene="rlmG"
                     /locus_tag="BSU_01060"
                     /old_locus_tag="BSU01060"
                     /label="rlmG gene"
     promotor_-35    121259..121263
                     /Source="Nicolas_upshift_promotors"
                     /id="U90"
                     /multdbtbs="SigA"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.586413586413586"
                     /psig="0.997002997002997"
                     /xcortree=2493
                     /SigmaFactorBS="gttcaaaaaaagaaaggctattatatcataaaagcaaaaaaa
                     GTTTGactcggtattttaacTATGTTAATATTGTAAAATGccaatgtatatattttgc
                     t"
                     /listShort="S51, rpoB, rpoC, S52, rplGB, S53, rpsL, rpsG,
                     fusA, S54, tufA, ybaC"
                     /listLong="S55, rpsJ, rplC, rplD, rplW, rplB, rpsS, rplV,
                     rpsC, rplP, rpmC, rpsQ, rplNA, rplX, rplE, rpsNA, rpsH,
                     rplF, rplR, rpsE, rpmD, rplO, secY, adk, mapA, ybzG, infA,
                     rpmJ, rpsM, rpsK, S56, rpoA, rplQ, S57, ybxA, ybaE, ybaF,
                     truA, NA, rplM, rpsI, S59, ybaJ"
                     /label="promotor_-35"
     S_feature       121277..121509
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_121686_121918"
                     /HighExp="G180, G150, H2O2, G135, Cold, T-5.40H, LoTm,
                     T-3.40H, Oxctl, Salt"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA, SigA"
                     /TUshortPSig="0.997, 1"
                     /TUlongSig="SigA, SigK, SigA, SigWXY, SigA, SigB, SigA"
                     /TUlongPSig="1, 1, 0.999, 1, 1, 1, 0.947"
                     /label="S51"
     upshifts        121277
                     /Source="Nicolas_upshifts"
                     /id="U90"
                     /multdbtbs="SigA"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.586413586413586"
                     /psig="0.997002997002997"
                     /xcortree=2493
                     /SigmaFactorBS="gttcaaaaaaagaaaggctattatatcataaaagcaaaaaaa
                     GTTTGactcggtattttaacTATGTTAATATTGTAAAATGccaatgtatatattttgc
                     t"
                     /listShort="S51, rpoB, rpoC, S52, rplGB, S53, rpsL, rpsG,
                     fusA, S54, tufA, ybaC"
                     /listLong="S55, rpsJ, rplC, rplD, rplW, rplB, rpsS, rplV,
                     rpsC, rplP, rpmC, rpsQ, rplNA, rplX, rplE, rpsNA, rpsH,
                     rplF, rplR, rpsE, rpmD, rplO, secY, adk, mapA, ybzG, infA,
                     rpmJ, rpsM, rpsK, S56, rpoA, rplQ, S57, ybxA, ybaE, ybaF,
                     truA, NA, rplM, rpsI, S59, ybaJ"
                     /label="upshifts"
     promotor_-10    121279..121298
                     /Source="Nicolas_upshift_promotors"
                     /id="U90"
                     /multdbtbs="SigA"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.586413586413586"
                     /psig="0.997002997002997"
                     /xcortree=2493
                     /SigmaFactorBS="gttcaaaaaaagaaaggctattatatcataaaagcaaaaaaa
                     GTTTGactcggtattttaacTATGTTAATATTGTAAAATGccaatgtatatattttgc
                     t"
                     /listShort="S51, rpoB, rpoC, S52, rplGB, S53, rpsL, rpsG,
                     fusA, S54, tufA, ybaC"
                     /listLong="S55, rpsJ, rplC, rplD, rplW, rplB, rpsS, rplV,
                     rpsC, rplP, rpmC, rpsQ, rplNA, rplX, rplE, rpsNA, rpsH,
                     rplF, rplR, rpsE, rpmD, rplO, secY, adk, mapA, ybzG, infA,
                     rpmJ, rpsM, rpsK, S56, rpoA, rplQ, S57, ybxA, ybaE, ybaF,
                     truA, NA, rplM, rpsI, S59, ybaJ"
                     /label="promotor_-10"
     CDS             121510..125091
                     /gene="rpoB"
                     /locus_tag="BSU_01070"
                     /old_locus_tag="BSU01070"
                     /EC_number="2.7.7.6"
                     /function="16.2: Construct biomass (Anabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:10049799, 10744988, 12455702, 12682299, 15060052,
                     28163698"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 10049799, 10744988,
                     12455702, 12682299, 15060052, 28163698; Product type e :
                     enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase (beta subunit)"
                     /protein_id="NP_387988.2"
                     /db_xref="EnsemblGenomes-Gn:BSU01070"
                     /db_xref="EnsemblGenomes-Tr:CAB11883"
                     /db_xref="GOA:P37870"
                     /db_xref="InterPro:IPR007120"
                     /db_xref="InterPro:IPR007121"
                     /db_xref="InterPro:IPR007641"
                     /db_xref="InterPro:IPR007642"
                     /db_xref="InterPro:IPR007644"
                     /db_xref="InterPro:IPR007645"
                     /db_xref="InterPro:IPR010243"
                     /db_xref="InterPro:IPR015712"
                     /db_xref="InterPro:IPR019462"
                     /db_xref="PDB:2LY7"
                     /db_xref="SubtiList:BG10728"
                     /db_xref="UniProtKB/Swiss-Prot:P37870"
                     /translation="MTGQLVQYGRHRQRRSYARISEVLELPNLIEIQTSSYQWFLDEG
                     LREMFQDISPIEDFTGNLSLEFIDYSLGEPKYPVEESKERDVTYSAPLRVKVRLINKE
                     TGEVKDQDVFMGDFPIMTDTGTFIINGAERVIVSQLVRSPSVYFSGKVDKNGKKGFTA
                     TVIPNRGAWLEYETDAKDVVYVRIDRTRKLPVTVLLRALGFGSDQEILDLIGENEYLR
                     NTLDKDNTENSDKALLEIYERLRPGEPPTVENAKSLLDSRFFDPKRYDLANVGRYKIN
                     KKLHIKNRLFNQRLAETLVDPETGEILAEKGQILDRRTLDKVLPYLENGIGFRKLYPN
                     GGVVEDEVTLQSIKIFAPTDQEGEQVINVIGNAYIEEEIKNITPADIISSISYFFNLL
                     HGVGDTDDIDHLGNRRLRSVGELLQNQFRIGLSRMERVVRERMSIQDTNTITPQQLIN
                     IRPVIASIKEFFGSSQLSQFMDQTNPLAELTHKRRLSALGPGGLTRERAGMEVRDVHY
                     SHYGRMCPIETPEGPNIGLINSLSSYAKVNRFGFIETPYRRVDPETGKVTGRIDYLTA
                     DEEDNYVVAQANARLDDEGAFIDDSIVARFRGENTVVSRNRVDYMDVSPKQVVSAATA
                     CIPFLENDDSNRALMGANMQRQAVPLMQPEAPFVGTGMEYVSGKDSGAAVICKHPGIV
                     ERVEAKNVWVRRYEEVDGQKVKGNLDKYSLLKFVRSNQGTCYNQRPIVSVGDEVVKGE
                     ILADGPSMELGELALGRNVMVGFMTWDGYNYEDAIIMSERLVKDDVYTSIHIEEYESE
                     ARDTKLGPEEITRDIPNVGEDALRNLDDRGIIRIGAEVKDGDLLVGKVTPKGVTELTA
                     EERLLHAIFGEKAREVRDTSLRVPHGGGGIIHDVKVFNREDGDELPPGVNQLVRVYIV
                     QKRKISEGDKMAGRHGNKGVISKILPEEDMPYLPDGTPIDIMLNPLGVPSRMNIGQVL
                     ELHMGMAARYLGIHIASPVFDGAREEDVWETLEEAGMSRDAKTVLYDGRTGEPFDNRV
                     SVGIMYMIKLAHMVDDKLHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGA
                     AYTLQEILTVKSDDVVGRVKTYEAIVKGDNVPEPGVPESFKVLIKELQSLGMDVKILS
                     GDEEEIEMRDLEDEEDAKQADGLALSGDEEPEETASADVERDVVTKE*"
                     /label="rpoB CDS"
     gene            121510..125091
                     /gene="rpoB"
                     /locus_tag="BSU_01070"
                     /old_locus_tag="BSU01070"
                     /label="rpoB gene"
     promotor_-10    complement(123095..123114)
                     /Source="Nicolas_upshift_promotors"
                     /id="U91"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp="0.997002997002997"
                     /psig="0.997002997002997"
                     /xcortree=1252
                     /SigmaFactorBS="acgcggcgatatggcgtttcaATAAAGCCAAaacggtttact
                     ttTGCATAAGATGATAGTGAGTtgatcaaaccgatgttcgggccctcaggcgtttcaa
                     t"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(123098)
                     /Source="Nicolas_upshifts"
                     /id="U91"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp="0.997002997002997"
                     /psig="0.997002997002997"
                     /xcortree=1252
                     /SigmaFactorBS="acgcggcgatatggcgtttcaATAAAGCCAAaacggtttact
                     ttTGCATAAGATGATAGTGAGTtgatcaaaccgatgttcgggccctcaggcgtttcaa
                     t"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(123128..123137)
                     /Source="Nicolas_upshift_promotors"
                     /id="U91"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp="0.997002997002997"
                     /psig="0.997002997002997"
                     /xcortree=1252
                     /SigmaFactorBS="acgcggcgatatggcgtttcaATAAAGCCAAaacggtttact
                     ttTGCATAAGATGATAGTGAGTtgatcaaaccgatgttcgggccctcaggcgtttcaa
                     t"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    complement(123966..123970)
                     /Source="Nicolas_upshift_promotors"
                     /id="U92"
                     /multdbtbs="-"
                     /comp="M13"
                     /sig="Sig-"
                     /pcomp="0.96103896103896"
                     /psig=0
                     /xcortree=63
                     /SigmaFactorBS="agatctccgtcttttacttctgccccaatacggatgattcCG
                     CGGTCatcaagattgcgaaGCGCAtcttcaccgacgtttggaatatcgcgagtgattt
                     c"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(123971)
                     /Source="Nicolas_upshifts"
                     /id="U92"
                     /multdbtbs="-"
                     /comp="M13"
                     /sig="Sig-"
                     /pcomp="0.96103896103896"
                     /psig=0
                     /xcortree=63
                     /SigmaFactorBS="agatctccgtcttttacttctgccccaatacggatgattcCG
                     CGGTCatcaagattgcgaaGCGCAtcttcaccgacgtttggaatatcgcgagtgattt
                     c"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(123985..123991)
                     /Source="Nicolas_upshift_promotors"
                     /id="U92"
                     /multdbtbs="-"
                     /comp="M13"
                     /sig="Sig-"
                     /pcomp="0.96103896103896"
                     /psig=0
                     /xcortree=63
                     /SigmaFactorBS="agatctccgtcttttacttctgccccaatacggatgattcCG
                     CGGTCatcaagattgcgaaGCGCAtcttcaccgacgtttggaatatcgcgagtgattt
                     c"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             125153..128752
                     /gene="rpoC"
                     /locus_tag="BSU_01080"
                     /old_locus_tag="BSU01080"
                     /EC_number="2.7.7.6"
                     /function="16.2: Construct biomass (Anabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:10672039, 10675340, 10910724, 11029421, 9795209,
                     10438769, 23070162, 22720735"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 10672039, 10675340,
                     10910724, 11029421, 9795209, 10438769, 23070162, 22720735;
                     Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase (beta' subunit)"
                     /protein_id="NP_387989.2"
                     /db_xref="EnsemblGenomes-Gn:BSU01080"
                     /db_xref="EnsemblGenomes-Tr:CAB11884"
                     /db_xref="GOA:P37871"
                     /db_xref="InterPro:IPR000722"
                     /db_xref="InterPro:IPR006592"
                     /db_xref="InterPro:IPR007066"
                     /db_xref="InterPro:IPR007080"
                     /db_xref="InterPro:IPR007081"
                     /db_xref="InterPro:IPR007083"
                     /db_xref="InterPro:IPR012754"
                     /db_xref="SubtiList:BG10729"
                     /db_xref="UniProtKB/Swiss-Prot:P37871"
                     /translation="MLDVNNFEYMNIGLASPDKIRSWSFGEVKKPETINYRTLKPEKD
                     GLFCERIFGPTKDWECHCGKYKRVRYKGVVCDRCGVEVTRAKVRRERMGHIELAAPVS
                     HIWYFKGIPSRMGLVLDMSPRALEEVIYFASYVVTDPANTPLEKKQLLSEKEYRAYLD
                     KYGNKFQASMGAEAIHKLLQDIDLVKEVDMLKEELKTSQGQRRTRAIKRLEVLEAFRN
                     SGNKPSWMILDVLPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLGA
                     PSIIVQNEKRMLQEAVDALIDNGRRGRPVTGPGNRPLKSLSHMLKGKQGRFRQNLLGK
                     RVDYSGRSVIVVGPHLKMYQCGLPKEMALELFKPFVMKELVEKGLAHNIKSAKRKIER
                     VQPEVWDVLESVIKEHPVLLNRAPTLHRLGIQAFEPTLVEGRAIRLHPLVCTAYNADF
                     DGDQMAVHVPLSAEAQAEARILMLAAQNILNPKDGKPVVTPSQDMVLGNYYLTLERAG
                     AVGEGMVFKNTDEALLAYQNGYVHLHTRVAVAANSLKNVTFTEEQRSKLLITTVGKLV
                     FNEILPESFPYMNEPTKSNIEEKTPDRFFLEKGADVKAVIAQQPINAPFKKGILGKII
                     AEIFKRFHITETSKMLDRMKNLGFKYSTKAGITVGVSDIVVLDDKQEILEEAQSKVDN
                     VMKQFRRGLITEEERYERVISIWSAAKDVIQGKLMKSLDELNPIYMMSDSGARGNASN
                     FTQLAGMRGLMANPAGRIIELPIKSSFREGLTVLEYFISTHGARKGLADTALKTADSG
                     YLTRRLVDVAQDVIIRETDCGTDRGILAKPLKEGTETIERLEERLIGRFARKQVKHPE
                     TGEVLVNENELIDEDKALEIVEAGIEEVWIRSAFTCNTPHGVCKRCYGRNLATGSDVE
                     VGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGDDITQGLPRIQELFEARNPKGQATIT
                     EIDGTVVEINEVRDKQQEIVVQGAVETRSYTAPYNSRLKVAEGDKITRGQVLTEGSID
                     PKELLKVTDLTTVQEYLLHEVQKVYRMQGVEIGDKHVEVMVRQMLRKVRVIDAGDTDV
                     LPGTLLDIHQFTEANKKVLLEGNRPATGRPVLLGITKASLETDSFLSAASFQETTRVL
                     TDAAIKGKRDELLGLKENVIIGKLVPAGTGMMKYRKVKPVSNVQPTDDMVPVE*"
                     /label="rpoC CDS"
     gene            125153..128752
                     /gene="rpoC"
                     /locus_tag="BSU_01080"
                     /old_locus_tag="BSU01080"
                     /label="rpoC gene"
     downshifts      complement(128217)
                     /Source="Nicolas_upshifts"
                     /id="D46"
                     /incds=1
                     /nref=1
                     /ntot=76
                     /MaxReadThrough="3.40002"
                     /MaxDrop="2.38911"
                     /score="-2.05539956"
                     /energy="-7.5"
                     /TU="U93"
                     /idTUdmin="U93"
                     /TUdmin="-132"
                     /isTUend="FALSE"
                     /label="downshifts"
     upshifts        complement(128371)
                     /Source="Nicolas_upshifts"
                     /id="U93"
                     /multdbtbs="-"
                     /comp="M13"
                     /sig="Sig-"
                     /pcomp="0.952047952047952"
                     /psig="0.000999000999001"
                     /xcortree=64
                     /SigmaFactorBS="caatgtacctggaagcacatcagtgtcaccggcatcaatcaC
                     Gcgtactttgcgaagcatctggcgaaccattacttctacgtgtttatcaccgatttca
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     misc_feature    complement(128389..128390)
                     /Source="Nicolas_upshift_promotors"
                     /id="U93"
                     /multdbtbs="-"
                     /comp="M13"
                     /sig="Sig-"
                     /pcomp="0.952047952047952"
                     /psig="0.000999000999001"
                     /xcortree=64
                     /SigmaFactorBS="caatgtacctggaagcacatcagtgtcaccggcatcaatcaC
                     Gcgtactttgcgaagcatctggcgaaccattacttctacgtgtttatcaccgatttca
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_single_box"
                     /note="Geneious type: promotor_single_box"
     downshifts      complement(128701)
                     /Source="Nicolas_upshifts"
                     /id="D47"
                     /incds=0
                     /nref=98
                     /ntot=210
                     /MaxReadThrough="1.61828"
                     /MaxDrop="4.90549"
                     /score="-2.05539956"
                     /energy="-7.5"
                     /TU="NA"
                     /idTUdmin="U95"
                     /TUdmin=0
                     /isTUend="TRUE"
                     /label="downshifts"
     S_feature       128753..128874
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_129162_129283"
                     /HighExp="LoTm, HiOs, S3, SMMPr, Heat, S1, BC, Glu, S4, MG
                     45"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA, SigA"
                     /TUshortPSig="0.997, 1"
                     /TUlongSig="SigA, SigK, SigA, SigWXY, SigA, SigB, SigA"
                     /TUlongPSig="1, 1, 0.999, 1, 1, 1, 0.947"
                     /label="S52"
     promotor_-35    128856..128863
                     /Source="Nicolas_upshift_promotors"
                     /id="U94"
                     /multdbtbs="-"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp="0.781218781218781"
                     /psig=1
                     /xcortree=2650
                     /SigmaFactorBS="cactctatgagaagaacgaatctaaaaaatgtcataccttGT
                     TGACATtcgtctcctagaaTGATAATATAACCAAGGTGCtcgaaataaacctgttact
                     t"
                     /listShort="rplGB, S53, rpsL, rpsG, fusA, S54, tufA, ybaC"
                     /listLong="S55, rpsJ, rplC, rplD, rplW, rplB, rpsS, rplV,
                     rpsC, rplP, rpmC, rpsQ, rplNA, rplX, rplE, rpsNA, rpsH,
                     rplF, rplR, rpsE, rpmD, rplO, secY, adk, mapA, ybzG, infA,
                     rpmJ, rpsM, rpsK, S56, rpoA, rplQ, S57, ybxA, ybaE, ybaF,
                     truA, NA, rplM, rpsI, S59, ybaJ"
                     /label="promotor_-35"
     upshifts        128876
                     /Source="Nicolas_upshifts"
                     /id="U94"
                     /multdbtbs="-"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp="0.781218781218781"
                     /psig=1
                     /xcortree=2650
                     /SigmaFactorBS="cactctatgagaagaacgaatctaaaaaatgtcataccttGT
                     TGACATtcgtctcctagaaTGATAATATAACCAAGGTGCtcgaaataaacctgttact
                     t"
                     /listShort="rplGB, S53, rpsL, rpsG, fusA, S54, tufA, ybaC"
                     /listLong="S55, rpsJ, rplC, rplD, rplW, rplB, rpsS, rplV,
                     rpsC, rplP, rpmC, rpsQ, rplNA, rplX, rplE, rpsNA, rpsH,
                     rplF, rplR, rpsE, rpmD, rplO, secY, adk, mapA, ybzG, infA,
                     rpmJ, rpsM, rpsK, S56, rpoA, rplQ, S57, ybxA, ybaE, ybaF,
                     truA, NA, rplM, rpsI, S59, ybaJ"
                     /label="upshifts"
     promotor_-10    128877..128896
                     /Source="Nicolas_upshift_promotors"
                     /id="U94"
                     /multdbtbs="-"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp="0.781218781218781"
                     /psig=1
                     /xcortree=2650
                     /SigmaFactorBS="cactctatgagaagaacgaatctaaaaaatgtcataccttGT
                     TGACATtcgtctcctagaaTGATAATATAACCAAGGTGCtcgaaataaacctgttact
                     t"
                     /listShort="rplGB, S53, rpsL, rpsG, fusA, S54, tufA, ybaC"
                     /listLong="S55, rpsJ, rplC, rplD, rplW, rplB, rpsS, rplV,
                     rpsC, rplP, rpmC, rpsQ, rplNA, rplX, rplE, rpsNA, rpsH,
                     rplF, rplR, rpsE, rpmD, rplO, secY, adk, mapA, ybzG, infA,
                     rpmJ, rpsM, rpsK, S56, rpoA, rplQ, S57, ybxA, ybaE, ybaF,
                     truA, NA, rplM, rpsI, S59, ybaJ"
                     /label="promotor_-10"
     misc_feature    complement(128894..128898)
                     /Source="Nicolas_upshift_promotors"
                     /id="U95"
                     /multdbtbs="-"
                     /comp="M13"
                     /sig="Sig-"
                     /pcomp="0.909090909090909"
                     /psig="0.023976023976024"
                     /xcortree=67
                     /SigmaFactorBS="ggcctgtgatactttatcataagacataaacatatcctccaa
                     agtaacaggtttatttcGAGCAccttggttatattatcattctaggagacgaatgtca
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_single_box"
                     /note="Geneious type: promotor_single_box"
     upshifts        complement(128897)
                     /Source="Nicolas_upshifts"
                     /id="U95"
                     /multdbtbs="-"
                     /comp="M13"
                     /sig="Sig-"
                     /pcomp="0.909090909090909"
                     /psig="0.023976023976024"
                     /xcortree=67
                     /SigmaFactorBS="ggcctgtgatactttatcataagacataaacatatcctccaa
                     agtaacaggtttatttcGAGCAccttggttatattatcattctaggagacgaatgtca
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             128931..129179
                     /gene="rulS"
                     /locus_tag="BSU_01090"
                     /old_locus_tag="BSU01090"
                     /function="16.8: Protect"
                     /function="16.13: Shape"
                     /function="16.2: Construct biomass (Anabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:11574053, 11948165, 17468242, 7657605, 22355167,
                     23249744, 24204571, 22720735"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 11574053, 11948165,
                     17468242, 7657605, 22355167, 23249744, 24204571, 22720735;
                     Product type s: structure"
                     /codon_start=1
                     /transl_table=11
                     /product="K-turn RNA binding protein; alternative
                     ribosomal protein L7A"
                     /protein_id="NP_387990.1"
                     /db_xref="EnsemblGenomes-Gn:BSU01090"
                     /db_xref="EnsemblGenomes-Tr:CAB11885"
                     /db_xref="GOA:P46350"
                     /db_xref="InterPro:IPR000948"
                     /db_xref="InterPro:IPR004038"
                     /db_xref="InterPro:IPR023460"
                     /db_xref="InterPro:IPR029064"
                     /db_xref="PDB:3V7E"
                     /db_xref="PDB:4LCK"
                     /db_xref="PDB:4TZP"
                     /db_xref="PDB:4TZV"
                     /db_xref="PDB:4TZW"
                     /db_xref="PDB:4TZZ"
                     /db_xref="SubtiList:BG11365"
                     /db_xref="UniProtKB/Swiss-Prot:P46350"
                     /translation="MSYDKVSQAKSIIIGTKQTVKALKRGSVKEVVVAKDADPILTSS
                     VVSLAEDQGISVSMVESMKKLGKACGIEVGAAAVAIIL*"
                     /label="rulS CDS"
     gene            128931..129179
                     /gene="rulS"
                     /locus_tag="BSU_01090"
                     /old_locus_tag="BSU01090"
                     /label="rulS gene"
     S_feature       129180..129292
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_129589_129701"
                     /HighExp="T-3.40H, M/G, T-1.40H, T-5.40H, Salt, Mal,
                     T-0.40H, G/S, M9-exp, Diami"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA, SigA, SigA"
                     /TUshortPSig="1, 0.997, 1"
                     /TUlongSig="SigA, SigK, SigA, SigWXY, SigA, SigB, SigA"
                     /TUlongPSig="1, 1, 0.999, 1, 1, 1, 0.947"
                     /label="S53"
     CDS             129293..129709
                     /gene="rpsL"
                     /locus_tag="BSU_01100"
                     /old_locus_tag="BSU01100"
                     /function="16.2: Construct biomass (Anabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:11489846, 12682299, 16484214, 18252828, 19383706,
                     20007320"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 11489846, 12682299,
                     16484214, 18252828, 19383706, 20007320; Product type s :
                     structure"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosomal protein S12 (BS12)"
                     /protein_id="NP_387991.2"
                     /db_xref="EnsemblGenomes-Gn:BSU01100"
                     /db_xref="EnsemblGenomes-Tr:CAB11886"
                     /db_xref="GOA:P21472"
                     /db_xref="InterPro:IPR005679"
                     /db_xref="InterPro:IPR006032"
                     /db_xref="InterPro:IPR012340"
                     /db_xref="PDB:3J9W"
                     /db_xref="PDB:5NJT"
                     /db_xref="SubtiList:BG19009"
                     /db_xref="UniProtKB/Swiss-Prot:P21472"
                     /translation="MPTINQLIRKGRVSKVENSKSPALNKGYNSFKKEHTNVSSPQKR
                     GVCTRVGTMTPKKPNSALRKYARVRLTNGIEVTAYIPGIGHNLQEHSVVLIRGGRVKD
                     LPGVRYHIVRGALDTAGVENRAQGRSKYGTKKPKAK*"
                     /label="rpsL CDS"
     gene            129293..129709
                     /gene="rpsL"
                     /locus_tag="BSU_01100"
                     /old_locus_tag="BSU01100"
                     /label="rpsL gene"
     CDS             129751..130221
                     /gene="rpsG"
                     /locus_tag="BSU_01110"
                     /old_locus_tag="BSU01110"
                     /function="16.2: Construct biomass (Anabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:8722036, 12682299, 19653700"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 8722036, 12682299,
                     19653700; Product type s: structure"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosomal protein S7 (BS7)"
                     /protein_id="NP_387992.2"
                     /db_xref="EnsemblGenomes-Gn:BSU01110"
                     /db_xref="EnsemblGenomes-Tr:CAB11887"
                     /db_xref="GOA:P21469"
                     /db_xref="InterPro:IPR000235"
                     /db_xref="InterPro:IPR005717"
                     /db_xref="InterPro:IPR020606"
                     /db_xref="InterPro:IPR023798"
                     /db_xref="InterPro:IPR036823"
                     /db_xref="PDB:3J9W"
                     /db_xref="PDB:5NJT"
                     /db_xref="SubtiList:BG19006"
                     /db_xref="UniProtKB/Swiss-Prot:P21469"
                     /translation="MPRKGPVAKRDVLPDPIYNSKLVSRLINKMMIDGKKGKSQTILY
                     KSFDIIKERTGNDAMEVFEQALKNIMPVLEVKARRVGGANYQVPVEVRPERRTTLGLR
                     WLVNYARLRGEKTMEERLANEILDAANNTGAAVKKREDTHKMAEANKAFAHYRW*"
                     /label="rpsG CDS"
     gene            129751..130221
                     /gene="rpsG"
                     /locus_tag="BSU_01110"
                     /old_locus_tag="BSU01110"
                     /label="rpsG gene"
     CDS             130275..132353
                     /gene="fusA"
                     /locus_tag="BSU_01120"
                     /old_locus_tag="BSU01120"
                     /function="16.2: Construct biomass (Anabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:815236, 815243, 1556067, 4629789, 19366171, 22720735"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 815236, 815243, 1556067,
                     4629789, 19366171, 22720735; Product type e : enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor G"
                     /protein_id="NP_387993.2"
                     /db_xref="EnsemblGenomes-Gn:BSU01120"
                     /db_xref="EnsemblGenomes-Tr:CAB11888"
                     /db_xref="GOA:P80868"
                     /db_xref="InterPro:IPR000640"
                     /db_xref="InterPro:IPR000795"
                     /db_xref="InterPro:IPR004161"
                     /db_xref="InterPro:IPR004540"
                     /db_xref="InterPro:IPR005225"
                     /db_xref="InterPro:IPR005517"
                     /db_xref="InterPro:IPR009000"
                     /db_xref="InterPro:IPR009022"
                     /db_xref="InterPro:IPR014721"
                     /db_xref="InterPro:IPR020568"
                     /db_xref="InterPro:IPR027417"
                     /db_xref="InterPro:IPR031157"
                     /db_xref="InterPro:IPR035647"
                     /db_xref="InterPro:IPR035649"
                     /db_xref="PDB:5VH6"
                     /db_xref="SubtiList:BG11939"
                     /db_xref="UniProtKB/Swiss-Prot:P80868"
                     /translation="MAREFSLEKTRNIGIMAHIDAGKTTTTERILFYTGRIHKIGETH
                     EGASQMDWMEQEQERGITITSAATTAQWKGYRVNIIDTPGHVDFTVEVERSLRVLDGA
                     VAVLDAQSGVEPQTETVWRQATTYGVPRIVFVNKMDKIGADFLYSVGTLRDRLQANAH
                     AIQLPIGAEDNFEGIIDLVENVAYFYEDDLGTRSDAKEIPEEYKEQAEELRNSLIEAV
                     CELDEELMDKYLEGEEITIDELKAGIRKGTLNVEFYPVLVGSAFKNKGVQLVLDAVLD
                     YLPAPTDVAAIKGTRPDTNEEIERHSSDEEPFSALAFKVMTDPYVGKLTFFRVYSGTL
                     DSGSYVKNSTKGKRERVGRILQMHANSREEISTVYAGDIAAAVGLKDTTTGDTLCDEK
                     DLVILESMEFPEPVIDVAIEPKSKADQDKMGIALAKLAEEDPTFRTQTNPETGQTIIS
                     GMGELHLDIIVDRMKREFKVEANVGAPQVAYRETFRTGAKVEGKFVRQSGGRGQFGHV
                     WIEFEPNEEGAGFEFENAIVGGVVPREYIPAVQAGLEDALENGVLAGFPLIDIKAKLF
                     DGSYHDVDSNEMAFKVAASMALKNAVSKCNPVLLEPIMKVEVVIPEEYMGDIMGDITS
                     RRGRVEGMEARGNAQVVRAMVPLAEMFGYATALRSNTQGRGTFTMHMDHYEEVPKSVA
                     EEIIKKNKGE*"
                     /label="fusA CDS"
     gene            130275..132353
                     /gene="fusA"
                     /locus_tag="BSU_01120"
                     /old_locus_tag="BSU01120"
                     /label="fusA gene"
     S_feature       132354..132472
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_132763_132881"
                     /HighExp="T-5.40H, T-4.40H, UNK1, SMM, HiTm, T-3.40H,
                     T-2.40H, SMMPr, MG 90, MG 15"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA, SigA, SigA"
                     /TUshortPSig="1, 0.997, 1"
                     /TUlongSig="SigA, SigK, SigA, SigWXY, SigA, SigB, SigA"
                     /TUlongPSig="1, 1, 0.999, 1, 1, 1, 0.947"
                     /label="S54"
     CDS             132473..133663
                     /gene="tufA"
                     /locus_tag="BSU_01130"
                     /old_locus_tag="BSU01130"
                     /function="16.2: Construct biomass (Anabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:10774755, 12682299, 7706132, 20133608, 22938038,
                     22720735"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 10774755, 12682299,
                     7706132, 20133608, 22938038, 22720735; Product type f :
                     factor"
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor Tu"
                     /protein_id="NP_387994.1"
                     /db_xref="EnsemblGenomes-Gn:BSU01130"
                     /db_xref="EnsemblGenomes-Tr:CAB11889"
                     /db_xref="GOA:P33166"
                     /db_xref="InterPro:IPR000795"
                     /db_xref="InterPro:IPR004160"
                     /db_xref="InterPro:IPR004161"
                     /db_xref="InterPro:IPR004541"
                     /db_xref="InterPro:IPR005225"
                     /db_xref="InterPro:IPR009000"
                     /db_xref="InterPro:IPR009001"
                     /db_xref="InterPro:IPR027417"
                     /db_xref="InterPro:IPR031157"
                     /db_xref="InterPro:IPR033720"
                     /db_xref="SubtiList:BG11056"
                     /db_xref="UniProtKB/Swiss-Prot:P33166"
                     /translation="MAKEKFDRSKSHANIGTIGHVDHGKTTLTAAITTVLHKKSGKGT
                     AMAYDQIDGAPEERERGITISTAHVEYETETRHYAHVDCPGHADYVKNMITGAAQMDG
                     AILVVSAADGPMPQTREHILLSKNVGVPYIVVFLNKCDMVDDEELLELVEMEVRDLLS
                     EYDFPGDDVPVVKGSALKALEGDAEWEAKIFELMDAVDEYIPTPERDTEKPFMMPVED
                     VFSITGRGTVATGRVERGQVKVGDEVEIIGLQEENKKTTVTGVEMFRKLLDYAEAGDN
                     IGALLRGVSREEIQRGQVLAKPGTITPHSKFKAEVYVLSKEEGGRHTPFFSNYRPQFY
                     FRTTDVTGIIHLPEGVEMVMPGDNTEMNVELISTIAIEEGTRFSIREGGRTVGSGVVS
                     TITE*"
                     /label="tufA CDS"
     gene            132473..133663
                     /gene="tufA"
                     /locus_tag="BSU_01130"
                     /old_locus_tag="BSU01130"
                     /label="tufA gene"
     downshifts      133658
                     /Source="Nicolas_upshifts"
                     /id="D48"
                     /incds=0
                     /nref=258
                     /ntot=269
                     /MaxReadThrough="4.84568"
                     /MaxDrop="8.56168"
                     /score="39.3984056"
                     /energy="-12.9"
                     /TU="U88,U90,U94"
                     /idTUdmin="U88"
                     /TUdmin="-1081"
                     /isTUend="FALSE"
                     /label="downshifts"
     misc_feature    complement(133689..133692)
                     /Source="Nicolas_upshift_promotors"
                     /id="U96"
                     /multdbtbs="-"
                     /comp="M13"
                     /sig="Sig-"
                     /pcomp="0.917082917082917"
                     /psig="0.001998001998002"
                     /xcortree=68
                     /SigmaFactorBS="acccctcgaatatgatagatcctattatacaagaaaaagata
                     agcaaacaaaaaacgagacCCACaggggtctcgtttaaaaccatactattactcagtg
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_single_box"
                     /note="Geneious type: promotor_single_box"
     upshifts        complement(133693)
                     /Source="Nicolas_upshifts"
                     /id="U96"
                     /multdbtbs="-"
                     /comp="M13"
                     /sig="Sig-"
                     /pcomp="0.917082917082917"
                     /psig="0.001998001998002"
                     /xcortree=68
                     /SigmaFactorBS="acccctcgaatatgatagatcctattatacaagaaaaagata
                     agcaaacaaaaaacgagacCCACaggggtctcgtttaaaaccatactattactcagtg
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     misc_feature    133719..133738
                     /Source="Nicolas_upshift_promotors"
                     /id="U97"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.846153846153846"
                     /psig=1
                     /xcortree=1878
                     /SigmaFactorBS="tatggttttaaacgagacccctgtgggtctcgttttttgttt
                     gcttatctttTTCTTGTATAATAGGATCTAtcatattcgaggggttaatatttatgat
                     t"
                     /listShort="ybaC"
                     /listLong="S55, rpsJ, rplC, rplD, rplW, rplB, rpsS, rplV,
                     rpsC, rplP, rpmC, rpsQ, rplNA, rplX, rplE, rpsNA, rpsH,
                     rplF, rplR, rpsE, rpmD, rplO, secY, adk, mapA, ybzG, infA,
                     rpmJ, rpsM, rpsK, S56, rpoA, rplQ, S57, ybxA, ybaE, ybaF,
                     truA, NA, rplM, rpsI, S59, ybaJ"
                     /label="promotor_single_box"
                     /note="Geneious type: promotor_single_box"
     upshifts        133727
                     /Source="Nicolas_upshifts"
                     /id="U97"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.846153846153846"
                     /psig=1
                     /xcortree=1878
                     /SigmaFactorBS="tatggttttaaacgagacccctgtgggtctcgttttttgttt
                     gcttatctttTTCTTGTATAATAGGATCTAtcatattcgaggggttaatatttatgat
                     t"
                     /listShort="ybaC"
                     /listLong="S55, rpsJ, rplC, rplD, rplW, rplB, rpsS, rplV,
                     rpsC, rplP, rpmC, rpsQ, rplNA, rplX, rplE, rpsNA, rpsH,
                     rplF, rplR, rpsE, rpmD, rplO, secY, adk, mapA, ybzG, infA,
                     rpmJ, rpsM, rpsK, S56, rpoA, rplQ, S57, ybxA, ybaE, ybaF,
                     truA, NA, rplM, rpsI, S59, ybaJ"
                     /label="upshifts"
     CDS             133762..134718
                     /gene="ybaC"
                     /locus_tag="BSU_01140"
                     /old_locus_tag="BSU01140"
                     /EC_number="3.4.11.5"
                     /function="16.11: Scavenge (Catabolism)"
                     /function="16.6: Maintain"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative proline iminopeptidase"
                     /protein_id="NP_387995.2"
                     /db_xref="EnsemblGenomes-Gn:BSU01140"
                     /db_xref="EnsemblGenomes-Tr:CAB11890"
                     /db_xref="GOA:P70981"
                     /db_xref="InterPro:IPR002410"
                     /db_xref="InterPro:IPR022742"
                     /db_xref="InterPro:IPR029058"
                     /db_xref="SubtiList:BG11988"
                     /db_xref="UniProtKB/Swiss-Prot:P70981"
                     /translation="MIPEKKSIAIMKELSIGNTKQMLMINGVDVKNPLLLFLHGGPGT
                     PQIGYVRHYQKELEQYFTVVHWDQRGSGLSYSKRISHHSMTINHFIKDTIQVTQWLLA
                     HFSKSKLYLAGHSWGSILALHVLQQRPDLFYTYYGISQVVNPQDEESTAYQHIREISE
                     SKKASILSFLTRFIGAPPWKQDIQHLIYRFCVELTRGGFTHRHRQSLAVLFQMLTGNE
                     YGVRNMHSFLNGLRFSKKHLTDELYRFNAFTSVPSIKVPCVFISGKHDLIVPAEISKQ
                     YYQELEAPEKRWFQFENSAHTPHIEEPSLFANTLSRHARHHL*"
                     /label="ybaC CDS"
     gene            133762..134718
                     /gene="ybaC"
                     /locus_tag="BSU_01140"
                     /old_locus_tag="BSU01140"
                     /label="ybaC gene"
     promotor_-35    134725..134732
                     /Source="Nicolas_upshift_promotors"
                     /id="U98"
                     /multdbtbs="-"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp="0.633366633366633"
                     /psig=1
                     /xcortree=2656
                     /SigmaFactorBS="gcacgacaccatttatgatagatcCTTGATAAataagaaaaa
                     cccCTGTATAATAAAAAAAGTGTgcaaatcatgcatattttaaataagtcttgcaaca
                     t"
                     /listShort="S55, rpsJ, rplC, rplD, rplW, rplB, rpsS, rplV,
                     rpsC, rplP, rpmC, rpsQ, rplNA, rplX, rplE, rpsNA, rpsH,
                     rplF, rplR, rpsE, rpmD, rplO, secY, adk, mapA, ybzG, infA,
                     rpmJ, rpsM, rpsK, S56, rpoA, rplQ, S57, ybxA, ybaE, ybaF,
                     truA, NA, rplM, rpsI, S59, ybaJ"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    134746..134765
                     /Source="Nicolas_upshift_promotors"
                     /id="U98"
                     /multdbtbs="-"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp="0.633366633366633"
                     /psig=1
                     /xcortree=2656
                     /SigmaFactorBS="gcacgacaccatttatgatagatcCTTGATAAataagaaaaa
                     cccCTGTATAATAAAAAAAGTGTgcaaatcatgcatattttaaataagtcttgcaaca
                     t"
                     /listShort="S55, rpsJ, rplC, rplD, rplW, rplB, rpsS, rplV,
                     rpsC, rplP, rpmC, rpsQ, rplNA, rplX, rplE, rpsNA, rpsH,
                     rplF, rplR, rpsE, rpmD, rplO, secY, adk, mapA, ybzG, infA,
                     rpmJ, rpsM, rpsK, S56, rpoA, rplQ, S57, ybxA, ybaE, ybaF,
                     truA, NA, rplM, rpsI, S59, ybaJ"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     S_feature       134761..134954
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_135170_135363"
                     /HighExp="T-1.40H, T-2.40H, T-1.10H, SMM, T-3.40H,
                     T-4.40H, BI, BMM, H2O2, nit"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig=1
                     /TUlongSig="SigA, SigA, SigA, SigA, SigA, SigA, SigWXY,
                     SigA, SigA"
                     /TUlongPSig="1, 1, 0.997, 1, 1, 0.999, 1, 1, 0.947"
                     /label="S55"
     upshifts        134761
                     /Source="Nicolas_upshifts"
                     /id="U98"
                     /multdbtbs="-"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp="0.633366633366633"
                     /psig=1
                     /xcortree=2656
                     /SigmaFactorBS="gcacgacaccatttatgatagatcCTTGATAAataagaaaaa
                     cccCTGTATAATAAAAAAAGTGTgcaaatcatgcatattttaaataagtcttgcaaca
                     t"
                     /listShort="S55, rpsJ, rplC, rplD, rplW, rplB, rpsS, rplV,
                     rpsC, rplP, rpmC, rpsQ, rplNA, rplX, rplE, rpsNA, rpsH,
                     rplF, rplR, rpsE, rpmD, rplO, secY, adk, mapA, ybzG, infA,
                     rpmJ, rpsM, rpsK, S56, rpoA, rplQ, S57, ybxA, ybaE, ybaF,
                     truA, NA, rplM, rpsI, S59, ybaJ"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             134955..135263
                     /gene="rpsJ"
                     /locus_tag="BSU_01150"
                     /old_locus_tag="BSU01150"
                     /function="16.2: Construct biomass (Anabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:12682299, 27964882"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 12682299, 27964882;
                     Product type s: structure"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosomal protein S10 (BS13); transcription
                     antitermination factor"
                     /protein_id="NP_387996.1"
                     /db_xref="EnsemblGenomes-Gn:BSU01150"
                     /db_xref="EnsemblGenomes-Tr:CAB11891"
                     /db_xref="GOA:P21471"
                     /db_xref="InterPro:IPR001848"
                     /db_xref="InterPro:IPR018268"
                     /db_xref="InterPro:IPR027486"
                     /db_xref="InterPro:IPR036838"
                     /db_xref="PDB:3J9W"
                     /db_xref="PDB:5NJT"
                     /db_xref="SubtiList:BG19008"
                     /db_xref="UniProtKB/Swiss-Prot:P21471"
                     /translation="MAKQKIRIRLKAYDHRILDQSAEKIVETAKRSGASVSGPIPLPT
                     EKSVYTILRAVHKYKDSREQFEMRTHKRLIDIVNPTPQTVDALMRLDLPSGVDIEIKL
                     *"
                     /label="rpsJ CDS"
     gene            134955..135263
                     /gene="rpsJ"
                     /locus_tag="BSU_01150"
                     /old_locus_tag="BSU01150"
                     /label="rpsJ gene"
     CDS             135303..135932
                     /gene="rplC"
                     /locus_tag="BSU_01160"
                     /old_locus_tag="BSU01160"
                     /function="16.2: Construct biomass (Anabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:12682299, 17981968, 19154332, 23759864"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 12682299, 17981968,
                     19154332, 23759864; Product type s: structure"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosomal protein L3 (BL3)"
                     /protein_id="NP_387997.1"
                     /db_xref="EnsemblGenomes-Gn:BSU01160"
                     /db_xref="EnsemblGenomes-Tr:CAB11892"
                     /db_xref="GOA:P42920"
                     /db_xref="InterPro:IPR000597"
                     /db_xref="InterPro:IPR009000"
                     /db_xref="InterPro:IPR019926"
                     /db_xref="InterPro:IPR019927"
                     /db_xref="PDB:3J3V"
                     /db_xref="PDB:3J3W"
                     /db_xref="PDB:3J9W"
                     /db_xref="PDB:5NJT"
                     /db_xref="SubtiList:BG11218"
                     /db_xref="UniProtKB/Swiss-Prot:P42920"
                     /translation="MTKGILGRKIGMTQVFAENGDLIPVTVIEAAPNVVLQKKTAEND
                     GYEAIQLGFDDKREKLSNKPEKGHVAKAETAPKRFVKELRGVEMDAYEVGQEVKVEIF
                     SAGEIVDVTGVSKGKGFQGAIKRHGQSRGPMSHGSRYHRRPGSMGPVDPNRVFKGKLL
                     PGRMGGEQITVQNLEIVKVDAERNLLLIKGNVPGAKKSLITVKSAVKSK*"
                     /label="rplC CDS"
     gene            135303..135932
                     /gene="rplC"
                     /locus_tag="BSU_01160"
                     /old_locus_tag="BSU01160"
                     /label="rplC gene"
     CDS             135960..136583
                     /gene="rplD"
                     /locus_tag="BSU_01170"
                     /old_locus_tag="BSU01170"
                     /function="16.2: Construct biomass (Anabolism)"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 2a: Function from experimental evidences
                     in other organisms; PubMedId: 10898684, 12682299,
                     22720735; Product type s: structure"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosomal protein L4"
                     /protein_id="NP_387998.1"
                     /db_xref="EnsemblGenomes-Gn:BSU01170"
                     /db_xref="EnsemblGenomes-Tr:CAB11893"
                     /db_xref="GOA:P42921"
                     /db_xref="InterPro:IPR002136"
                     /db_xref="InterPro:IPR013005"
                     /db_xref="InterPro:IPR023574"
                     /db_xref="PDB:3J3V"
                     /db_xref="PDB:3J3W"
                     /db_xref="PDB:3J9W"
                     /db_xref="PDB:5NJT"
                     /db_xref="SubtiList:BG11219"
                     /db_xref="UniProtKB/Swiss-Prot:P42921"
                     /translation="MPKVALYNQNGSTAGDIELNASVFGIEPNESVVFDAILMQRASL
                     RQGTHKVKNRSEVRGGGRKPWRQKGTGRARQGSIRSPQWRGGGVVFGPTPRSYSYKLP
                     KKVRRLAIKSVLSSKVIDNNIIVLEDLTLDTAKTKEMAAILKGLSVEKKALIVTADAN
                     EAVALSARNIPGVTVVEANGINVLDVVNHEKLLITKAAVEKVEEVLA*"
                     /label="rplD CDS"
     gene            135960..136583
                     /gene="rplD"
                     /locus_tag="BSU_01170"
                     /old_locus_tag="BSU01170"
                     /label="rplD gene"
     CDS             136583..136870
                     /gene="rplW"
                     /locus_tag="BSU_01180"
                     /old_locus_tag="BSU01180"
                     /function="16.2: Construct biomass (Anabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:12682299, 17981968, 23002217"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 12682299, 17981968,
                     23002217; Product type s: structure"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosomal protein L23"
                     /protein_id="NP_387999.2"
                     /db_xref="EnsemblGenomes-Gn:BSU01180"
                     /db_xref="EnsemblGenomes-Tr:CAB11894"
                     /db_xref="GOA:P42924"
                     /db_xref="InterPro:IPR001014"
                     /db_xref="InterPro:IPR012678"
                     /db_xref="InterPro:IPR013025"
                     /db_xref="PDB:3J3V"
                     /db_xref="PDB:3J3W"
                     /db_xref="PDB:3J9W"
                     /db_xref="PDB:5NJT"
                     /db_xref="SubtiList:BG11221"
                     /db_xref="UniProtKB/Swiss-Prot:P42924"
                     /translation="MKDPRDVLKRPVITERSADLMTEKKYTFEVDVRANKTEVKDAVE
                     SIFGVKVDKVNIMNYKGKSKRVGRYTGMTSRRRKAIVKLTADSKEIEIFEA*"
                     /label="rplW CDS"
     gene            136583..136870
                     /gene="rplW"
                     /locus_tag="BSU_01180"
                     /old_locus_tag="BSU01180"
                     /label="rplW gene"
     CDS             136902..137735
                     /gene="rplB"
                     /locus_tag="BSU_01190"
                     /old_locus_tag="BSU01190"
                     /function="16.2: Construct biomass (Anabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:12682299, 23249812, 24637032"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 12682299, 23249812,
                     24637032; Product type s: structure"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosomal protein L2 (BL2)"
                     /protein_id="NP_388000.2"
                     /db_xref="EnsemblGenomes-Gn:BSU01190"
                     /db_xref="EnsemblGenomes-Tr:CAB11895"
                     /db_xref="GOA:P42919"
                     /db_xref="InterPro:IPR002171"
                     /db_xref="InterPro:IPR005880"
                     /db_xref="InterPro:IPR008991"
                     /db_xref="InterPro:IPR012340"
                     /db_xref="InterPro:IPR014722"
                     /db_xref="InterPro:IPR014726"
                     /db_xref="InterPro:IPR022666"
                     /db_xref="InterPro:IPR022669"
                     /db_xref="InterPro:IPR022671"
                     /db_xref="PDB:3J3V"
                     /db_xref="PDB:3J3W"
                     /db_xref="PDB:3J9W"
                     /db_xref="PDB:5NJT"
                     /db_xref="SubtiList:BG11217"
                     /db_xref="UniProtKB/Swiss-Prot:P42919"
                     /translation="MAIKKYKPTSNGRRGMTTSDFAEITTDKPEKSLLAPLHKKGGRN
                     NQGKLTVRHQGGGHKRQYRVIDFKRDKDGIPGRVATVEYDPNRSANIALINYADGEKR
                     YILAPKGIQVGTEIMSGPEADIKVGNALPLINIPVGTVVHNIELKPGKGGQLVRSAGT
                     SAQVLGKEGKYVLVRLNSGEVRMILSACRASIGQVGNEQHELINIGKAGRSRWKGIRP
                     TVRGSVMNPNDHPHGGGEGRAPIGRKSPMSPWGKPTLGFKTRKKKNKSDKFIVRRRKN
                     K*"
                     /label="rplB CDS"
     gene            136902..137735
                     /gene="rplB"
                     /locus_tag="BSU_01190"
                     /old_locus_tag="BSU01190"
                     /label="rplB gene"
     downshifts      complement(137038)
                     /Source="Nicolas_upshifts"
                     /id="D49"
                     /incds=1
                     /nref=1
                     /ntot=47
                     /MaxReadThrough="3.39972"
                     /MaxDrop="4.09052"
                     /score="-4.16840603"
                     /energy="-12.8"
                     /TU="NA"
                     /idTUdmin="U99"
                     /TUdmin=1342
                     /isTUend="FALSE"
                     /label="downshifts"
     CDS             137793..138071
                     /gene="rpsS"
                     /locus_tag="BSU_01200"
                     /old_locus_tag="BSU01200"
                     /function="16.2: Construct biomass (Anabolism)"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 2a: Function from experimental evidences
                     in other organisms; PubMedId: 12682299; Product type s :
                     structure"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosomal protein S19 (BS19)"
                     /protein_id="NP_388001.1"
                     /db_xref="EnsemblGenomes-Gn:BSU01200"
                     /db_xref="EnsemblGenomes-Tr:CAB11896"
                     /db_xref="GOA:P21476"
                     /db_xref="InterPro:IPR002222"
                     /db_xref="InterPro:IPR005732"
                     /db_xref="InterPro:IPR020934"
                     /db_xref="InterPro:IPR023575"
                     /db_xref="PDB:3J9W"
                     /db_xref="PDB:5NJT"
                     /db_xref="SubtiList:BG19011"
                     /db_xref="UniProtKB/Swiss-Prot:P21476"
                     /translation="MARSLKKGPFVDGHLMTKIEKLNETDKKQVVKTWSRRSTIFPQF
                     IGHTIAVYDGRKHVPVFISEDMVGHKLGEFAPTRTYKGHASDDKKTRR*"
                     /label="rpsS CDS"
     gene            137793..138071
                     /gene="rpsS"
                     /locus_tag="BSU_01200"
                     /old_locus_tag="BSU01200"
                     /label="rpsS gene"
     CDS             138088..138429
                     /gene="rplV"
                     /locus_tag="BSU_01210"
                     /old_locus_tag="BSU01210"
                     /function="16.2: Construct biomass (Anabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:7928988, 12682299, 23002217"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 7928988, 12682299,
                     23002217; Product type s: structure"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosomal protein L22 (BL17)"
                     /protein_id="NP_388002.1"
                     /db_xref="EnsemblGenomes-Gn:BSU01210"
                     /db_xref="EnsemblGenomes-Tr:CAB11897"
                     /db_xref="GOA:P42060"
                     /db_xref="InterPro:IPR001063"
                     /db_xref="InterPro:IPR005727"
                     /db_xref="InterPro:IPR018260"
                     /db_xref="InterPro:IPR036394"
                     /db_xref="PDB:3J3V"
                     /db_xref="PDB:3J3W"
                     /db_xref="PDB:3J9W"
                     /db_xref="PDB:5NJT"
                     /db_xref="SubtiList:BG11078"
                     /db_xref="UniProtKB/Swiss-Prot:P42060"
                     /translation="MQAKAVARTVRIAPRKARLVMDLIRGKQVGEAVSILNLTPRAAS
                     PIIEKVLKSAIANAEHNYEMDANNLVISQAFVDEGPTLKRFRPRAMGRASQINKRTSH
                     ITIVVSEKKEG*"
                     /label="rplV CDS"
     gene            138088..138429
                     /gene="rplV"
                     /locus_tag="BSU_01210"
                     /old_locus_tag="BSU01210"
                     /label="rplV gene"
     CDS             138433..139089
                     /gene="rpsC"
                     /locus_tag="BSU_01220"
                     /old_locus_tag="BSU01220"
                     /function="16.2: Construct biomass (Anabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:12682299"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 12682299; Product type s:
                     structure"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosomal protein S3 (BS3)"
                     /protein_id="NP_388003.2"
                     /db_xref="EnsemblGenomes-Gn:BSU01220"
                     /db_xref="EnsemblGenomes-Tr:CAB11898"
                     /db_xref="GOA:P21465"
                     /db_xref="InterPro:IPR001351"
                     /db_xref="InterPro:IPR004044"
                     /db_xref="InterPro:IPR004087"
                     /db_xref="InterPro:IPR005704"
                     /db_xref="InterPro:IPR009019"
                     /db_xref="InterPro:IPR015946"
                     /db_xref="InterPro:IPR018280"
                     /db_xref="InterPro:IPR036419"
                     /db_xref="PDB:3J9W"
                     /db_xref="PDB:5NJT"
                     /db_xref="SubtiList:BG19005"
                     /db_xref="UniProtKB/Swiss-Prot:P21465"
                     /translation="MGQKVNPVGLRIGVIRDWESKWYAGKDYADFLHEDLKIREYISK
                     RLSDASVSKVEIERAANRVNITIHTAKPGMVIGKGGSEVEALRKALNSLTGKRVHINI
                     LEIKRADLDAQLVADNIARQLENRVSFRRAQKQQIQRTMRAGAQGVKTMVSGRLGGAD
                     IARSEYYSEGTVPLHTLRADIDYATSEADTTYGKLGVKVWIYRGEVLPTKKKNEEGGK
                     *"
                     /label="rpsC CDS"
     gene            138433..139089
                     /gene="rpsC"
                     /locus_tag="BSU_01220"
                     /old_locus_tag="BSU01220"
                     /label="rpsC gene"
     downshifts      complement(138446)
                     /Source="Nicolas_upshifts"
                     /id="D50"
                     /incds=0
                     /nref=1
                     /ntot=62
                     /MaxReadThrough="3.68388"
                     /MaxDrop="2.1922"
                     /score="-4.16840603"
                     /energy="-12.8"
                     /TU="U99"
                     /idTUdmin="U99"
                     /TUdmin="-66"
                     /isTUend="FALSE"
                     /label="downshifts"
     promotor_-10    complement(138527..138531)
                     /Source="Nicolas_upshift_promotors"
                     /id="U99"
                     /multdbtbs="-"
                     /comp="M13"
                     /sig="Sig-"
                     /pcomp="0.972027972027972"
                     /psig="0.00999000999001"
                     /xcortree=77
                     /SigmaFactorBS="tactttagaaacagaagcgtcagaaaggcgtttgctaatgta
                     ttCACgaatttttaaatcttcGTGCAggaagtcagcgtaatctttaccagcgtaccac
                     t"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(138534)
                     /Source="Nicolas_upshifts"
                     /id="U99"
                     /multdbtbs="-"
                     /comp="M13"
                     /sig="Sig-"
                     /pcomp="0.972027972027972"
                     /psig="0.00999000999001"
                     /xcortree=77
                     /SigmaFactorBS="tactttagaaacagaagcgtcagaaaggcgtttgctaatgta
                     ttCACgaatttttaaatcttcGTGCAggaagtcagcgtaatctttaccagcgtaccac
                     t"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(138548..138550)
                     /Source="Nicolas_upshift_promotors"
                     /id="U99"
                     /multdbtbs="-"
                     /comp="M13"
                     /sig="Sig-"
                     /pcomp="0.972027972027972"
                     /psig="0.00999000999001"
                     /xcortree=77
                     /SigmaFactorBS="tactttagaaacagaagcgtcagaaaggcgtttgctaatgta
                     ttCACgaatttttaaatcttcGTGCAggaagtcagcgtaatctttaccagcgtaccac
                     t"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             139091..139525
                     /gene="rplP"
                     /locus_tag="BSU_01230"
                     /old_locus_tag="BSU01230"
                     /function="16.2: Construct biomass (Anabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:12682299, 16390447, 24335279"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 12682299, 16390447,
                     24335279; Product type s: structure"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosomal protein L16"
                     /protein_id="NP_388004.1"
                     /db_xref="EnsemblGenomes-Gn:BSU01230"
                     /db_xref="EnsemblGenomes-Tr:CAB11899"
                     /db_xref="GOA:P14577"
                     /db_xref="InterPro:IPR000114"
                     /db_xref="InterPro:IPR016180"
                     /db_xref="InterPro:IPR020798"
                     /db_xref="InterPro:IPR036920"
                     /db_xref="PDB:3J9W"
                     /db_xref="PDB:5NJT"
                     /db_xref="SubtiList:BG10755"
                     /db_xref="UniProtKB/Swiss-Prot:P14577"
                     /translation="MLLPKRVKYRREHRGKMRGRAKGGTEVHFGEFGIQALEASWITN
                     RQIEAARIAMTRYMKRGGKVWIKIFPSKPYTAKPLEVRMGSGKGAPEGWVAVVKPGKV
                     LFEISGVSEEVAREALRLASHKLPIKTKFVKREEIGGESNES*"
                     /label="rplP CDS"
     gene            139091..139525
                     /gene="rplP"
                     /locus_tag="BSU_01230"
                     /old_locus_tag="BSU01230"
                     /label="rplP gene"
     CDS             139515..139715
                     /gene="rpmC"
                     /locus_tag="BSU_01240"
                     /old_locus_tag="BSU01240"
                     /function="16.2: Construct biomass (Anabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:12682299, 23002217"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 12682299, 23002217;
                     Product type s: structure"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosomal protein L29"
                     /protein_id="NP_388005.1"
                     /db_xref="EnsemblGenomes-Gn:BSU01240"
                     /db_xref="EnsemblGenomes-Tr:CAB11900"
                     /db_xref="GOA:P12873"
                     /db_xref="InterPro:IPR001854"
                     /db_xref="InterPro:IPR018254"
                     /db_xref="InterPro:IPR036049"
                     /db_xref="PDB:3J3V"
                     /db_xref="PDB:3J3W"
                     /db_xref="PDB:3J9W"
                     /db_xref="PDB:5NJT"
                     /db_xref="SubtiList:BG10756"
                     /db_xref="UniProtKB/Swiss-Prot:P12873"
                     /translation="MKANEIRDLTTAEIEQKVKSLKEELFNLRFQLATGQLENTARIR
                     EVRKAIARMKTVIREREIAANK*"
                     /label="rpmC CDS"
     gene            139515..139715
                     /gene="rpmC"
                     /locus_tag="BSU_01240"
                     /old_locus_tag="BSU01240"
                     /label="rpmC gene"
     CDS             139738..140001
                     /gene="rpsQ"
                     /locus_tag="BSU_01250"
                     /old_locus_tag="BSU01250"
                     /function="16.2: Construct biomass (Anabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:12682299"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 12682299; Product type s:
                     structure"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosomal protein S17 (BS16)"
                     /protein_id="NP_388006.1"
                     /db_xref="EnsemblGenomes-Gn:BSU01250"
                     /db_xref="EnsemblGenomes-Tr:CAB11901"
                     /db_xref="GOA:P12874"
                     /db_xref="InterPro:IPR000266"
                     /db_xref="InterPro:IPR012340"
                     /db_xref="InterPro:IPR019979"
                     /db_xref="InterPro:IPR019984"
                     /db_xref="PDB:3J9W"
                     /db_xref="PDB:5NJT"
                     /db_xref="SubtiList:BG10757"
                     /db_xref="UniProtKB/Swiss-Prot:P12874"
                     /translation="MSERNQRKVYQGRVVSDKMDKTITVVVETYKKHTLYGKRVKYSK
                     KFKAHDENNQAKIGDIVKIMETRPLSATKRFRLVEVVEEAVII*"
                     /label="rpsQ CDS"
     gene            139738..140001
                     /gene="rpsQ"
                     /locus_tag="BSU_01250"
                     /old_locus_tag="BSU01250"
                     /label="rpsQ gene"
     CDS             140042..140410
                     /gene="rplNA"
                     /locus_tag="BSU_01260"
                     /old_locus_tag="BSU01260"
                     /function="16.2: Construct biomass (Anabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:8722036, 8805509, 12682299, 22829778"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 8722036, 8805509,
                     12682299, 22829778; Product type s: structure"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosomal protein L14"
                     /protein_id="NP_388007.1"
                     /db_xref="EnsemblGenomes-Gn:BSU01260"
                     /db_xref="EnsemblGenomes-Tr:CAB11902"
                     /db_xref="GOA:P12875"
                     /db_xref="InterPro:IPR000218"
                     /db_xref="InterPro:IPR005745"
                     /db_xref="InterPro:IPR019972"
                     /db_xref="InterPro:IPR036853"
                     /db_xref="PDB:3J3V"
                     /db_xref="PDB:3J3W"
                     /db_xref="PDB:3J9W"
                     /db_xref="PDB:5NJT"
                     /db_xref="SubtiList:BG10758"
                     /db_xref="UniProtKB/Swiss-Prot:P12875"
                     /translation="MIQQETRLKVADNSGAREVLTIKVLGGSGRKTANIGDVIVCTVK
                     QATPGGVVKKGEVVKAVIVRTKSGARRSDGSYISFDENACVIIRDDKSPRGTRIFGPV
                     ARELRENNFMKIVSLAPEVI*"
                     /label="rplNA CDS"
     gene            140042..140410
                     /gene="rplNA"
                     /locus_tag="BSU_01260"
                     /old_locus_tag="BSU01260"
                     /label="rplNA gene"
     CDS             140448..140759
                     /gene="rplX"
                     /locus_tag="BSU_01270"
                     /old_locus_tag="BSU01270"
                     /function="16.2: Construct biomass (Anabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:11278078, 12682299"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 11278078, 12682299;
                     Product type s: structure"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosomal protein L24 (BL23)"
                     /protein_id="NP_388008.1"
                     /db_xref="EnsemblGenomes-Gn:BSU01270"
                     /db_xref="EnsemblGenomes-Tr:CAB11903"
                     /db_xref="GOA:P0CI78"
                     /db_xref="InterPro:IPR003256"
                     /db_xref="InterPro:IPR005824"
                     /db_xref="InterPro:IPR005825"
                     /db_xref="InterPro:IPR008991"
                     /db_xref="InterPro:IPR014722"
                     /db_xref="PDB:3J3V"
                     /db_xref="PDB:3J3W"
                     /db_xref="PDB:3J9W"
                     /db_xref="PDB:5NJT"
                     /db_xref="SubtiList:BG10759"
                     /db_xref="UniProtKB/Swiss-Prot:P0CI78"
                     /translation="MHVKKGDKVMVISGKDKGKQGTILAAFPKKDRVLVEGVNMVKKH
                     SKPTQANPQGGISNQEAPIHVSNVMPLDPKTGEVTRVGYKVEDGKKVRVAKKSGQVLD
                     K*"
                     /label="rplX CDS"
     gene            140448..140759
                     /gene="rplX"
                     /locus_tag="BSU_01270"
                     /old_locus_tag="BSU01270"
                     /label="rplX gene"
     CDS             140786..141325
                     /gene="rplE"
                     /locus_tag="BSU_01280"
                     /old_locus_tag="BSU01280"
                     /function="16.2: Construct biomass (Anabolism)"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 2a: Function from experimental evidences
                     in other organisms; PubMedId: 12682299; Product type s :
                     structure"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosomal protein L5 (BL6)"
                     /protein_id="NP_388009.1"
                     /db_xref="EnsemblGenomes-Gn:BSU01280"
                     /db_xref="EnsemblGenomes-Tr:CAB11904"
                     /db_xref="GOA:P12877"
                     /db_xref="InterPro:IPR002132"
                     /db_xref="InterPro:IPR020929"
                     /db_xref="InterPro:IPR020930"
                     /db_xref="InterPro:IPR022803"
                     /db_xref="InterPro:IPR031309"
                     /db_xref="InterPro:IPR031310"
                     /db_xref="PDB:3J3V"
                     /db_xref="PDB:3J9W"
                     /db_xref="PDB:5NJT"
                     /db_xref="SubtiList:BG10760"
                     /db_xref="UniProtKB/Swiss-Prot:P12877"
                     /translation="MNRLKEKYNKEIAPALMTKFNYDSVMQVPKIEKIVINMGVGDAV
                     QNAKAIDSAVEELTFIAGQKPVVTRAKKSIAGFRLREGMPIGAKVTLRGERMYDFLDK
                     LISVSLPRVRDFRGVSKKSFDGRGNYTLGIKEQLIFPEIDYDKVTKVRGMDIVIVTTA
                     NTDEEARELLTQVGMPFQK*"
                     /label="rplE CDS"
     gene            140786..141325
                     /gene="rplE"
                     /locus_tag="BSU_01280"
                     /old_locus_tag="BSU01280"
                     /label="rplE gene"
     CDS             141348..141533
                     /gene="rpsNA"
                     /locus_tag="BSU_01290"
                     /old_locus_tag="BSU01290"
                     /function="16.2: Construct biomass (Anabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:12682299, 17163968, 19648245, 20208344, 27561249"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 12682299, 17163968,
                     19648245, 20208344, 27561249; Product type s: structure"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosomal protein S14"
                     /protein_id="NP_388010.1"
                     /db_xref="EnsemblGenomes-Gn:BSU01290"
                     /db_xref="EnsemblGenomes-Tr:CAB11905"
                     /db_xref="GOA:P12878"
                     /db_xref="InterPro:IPR001209"
                     /db_xref="InterPro:IPR018271"
                     /db_xref="InterPro:IPR023053"
                     /db_xref="PDB:3J9W"
                     /db_xref="PDB:5NJT"
                     /db_xref="SubtiList:BG10761"
                     /db_xref="UniProtKB/Swiss-Prot:P12878"
                     /translation="MAKKSMIAKQQRTPKFKVQEYTRCERCGRPHSVIRKFKLCRICF
                     RELAYKGQIPGVKKASW*"
                     /label="rpsNA CDS"
     gene            141348..141533
                     /gene="rpsNA"
                     /locus_tag="BSU_01290"
                     /old_locus_tag="BSU01290"
                     /label="rpsNA gene"
     CDS             141565..141963
                     /gene="rpsH"
                     /locus_tag="BSU_01300"
                     /old_locus_tag="BSU01300"
                     /function="16.2: Construct biomass (Anabolism)"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 2a: Function from experimental evidences
                     in other organisms; PubMedId: 12682299; Product type s :
                     structure"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosomal protein S8 (BS8)"
                     /protein_id="NP_388011.2"
                     /db_xref="EnsemblGenomes-Gn:BSU01300"
                     /db_xref="EnsemblGenomes-Tr:CAB11906"
                     /db_xref="GOA:P12879"
                     /db_xref="InterPro:IPR000630"
                     /db_xref="InterPro:IPR035987"
                     /db_xref="PDB:3J9W"
                     /db_xref="PDB:5NJT"
                     /db_xref="SubtiList:BG10762"
                     /db_xref="UniProtKB/Swiss-Prot:P12879"
                     /translation="MVMTDPIADMLTRIRNANMVRHEKLEIPASKLKREIAEILKREG
                     FIRDVEFVEDSKQGIIRVFLKYGQNNERVITGLKRISKPGLRVYAKSNEVPRVLNGLG
                     IAIISTSQGVLTDKEARAKQAGGEVLAYVW*"
                     /label="rpsH CDS"
     gene            141565..141963
                     /gene="rpsH"
                     /locus_tag="BSU_01300"
                     /old_locus_tag="BSU01300"
                     /label="rpsH gene"
     downshifts      complement(141966)
                     /Source="Nicolas_upshifts"
                     /id="D51"
                     /incds=0
                     /nref=1
                     /ntot=74
                     /MaxReadThrough="2.68318"
                     /MaxDrop="2.55712"
                     /score="5.40276403"
                     /energy="-15.9"
                     /TU="NA"
                     /idTUdmin="U99"
                     /TUdmin="-3586"
                     /isTUend="FALSE"
                     /label="downshifts"
     CDS             141993..142532
                     /gene="rplF"
                     /locus_tag="BSU_01310"
                     /old_locus_tag="BSU01310"
                     /function="16.2: Construct biomass (Anabolism)"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 2a: Function from experimental evidences
                     in other organisms; PubMedId: 12682299, 25330043; Product
                     type s: structure"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosomal protein L6 (BL8)"
                     /protein_id="NP_388012.1"
                     /db_xref="EnsemblGenomes-Gn:BSU01310"
                     /db_xref="EnsemblGenomes-Tr:CAB11907"
                     /db_xref="GOA:P46898"
                     /db_xref="InterPro:IPR000702"
                     /db_xref="InterPro:IPR002358"
                     /db_xref="InterPro:IPR019906"
                     /db_xref="InterPro:IPR020040"
                     /db_xref="InterPro:IPR036789"
                     /db_xref="PDB:3J3V"
                     /db_xref="PDB:3J3W"
                     /db_xref="PDB:3J9W"
                     /db_xref="PDB:5NJT"
                     /db_xref="SubtiList:BG11408"
                     /db_xref="UniProtKB/Swiss-Prot:P46898"
                     /translation="MSRVGKKLLEIPSDVTVTLNDNNTVAVKGPKGELTRTFHPDMEI
                     KVEDNVLTVARPSDQKEHRALHGTTRSLLGNMVEGVSKGFERGLELVGVGYRASKSGN
                     KLVLNVGYSHPVEIVPEEGIEIEVPSQTKVVVKGTDKERVGAIAANIRAVRSPEPYKG
                     KGIRYEGEVVRRKEGKSAK*"
                     /label="rplF CDS"
     gene            141993..142532
                     /gene="rplF"
                     /locus_tag="BSU_01310"
                     /old_locus_tag="BSU01310"
                     /label="rplF gene"
     CDS             142565..142927
                     /gene="rplR"
                     /locus_tag="BSU_01320"
                     /old_locus_tag="BSU01320"
                     /function="16.2: Construct biomass (Anabolism)"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 2a: Function from experimental evidences
                     in other organisms; PubMedId: 12682299; Product type s :
                     structure"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosomal protein L18"
                     /protein_id="NP_388013.2"
                     /db_xref="EnsemblGenomes-Gn:BSU01320"
                     /db_xref="EnsemblGenomes-Tr:CAB11908"
                     /db_xref="GOA:P46899"
                     /db_xref="InterPro:IPR004389"
                     /db_xref="InterPro:IPR005484"
                     /db_xref="PDB:3J3V"
                     /db_xref="PDB:3J9W"
                     /db_xref="PDB:5NJT"
                     /db_xref="SubtiList:BG11409"
                     /db_xref="UniProtKB/Swiss-Prot:P46899"
                     /translation="MITKTSKNAARLKRHARVRAKLSGTAERPRLNVFRSNKHIYAQI
                     IDDVNGVTLASASTLDKDLNVESTGDTSAATKVGELVAKRAAEKGISDVVFDRGGYLY
                     HGRVKALADAAREAGLKF*"
                     /label="rplR CDS"
     gene            142565..142927
                     /gene="rplR"
                     /locus_tag="BSU_01320"
                     /old_locus_tag="BSU01320"
                     /label="rplR gene"
     CDS             142952..143452
                     /gene="rpsE"
                     /locus_tag="BSU_01330"
                     /old_locus_tag="BSU01330"
                     /function="16.2: Construct biomass (Anabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:6211592, 12682299"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 6211592, 12682299;
                     Product type s: structure"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosomal protein S5"
                     /protein_id="NP_388014.1"
                     /db_xref="EnsemblGenomes-Gn:BSU01330"
                     /db_xref="EnsemblGenomes-Tr:CAB11909"
                     /db_xref="GOA:P21467"
                     /db_xref="InterPro:IPR000851"
                     /db_xref="InterPro:IPR005324"
                     /db_xref="InterPro:IPR005712"
                     /db_xref="InterPro:IPR013810"
                     /db_xref="InterPro:IPR014721"
                     /db_xref="InterPro:IPR018192"
                     /db_xref="InterPro:IPR020568"
                     /db_xref="PDB:3J9W"
                     /db_xref="PDB:5NJT"
                     /db_xref="SubtiList:BG10442"
                     /db_xref="UniProtKB/Swiss-Prot:P21467"
                     /translation="MRRIDPSKLELEERLVTVNRVAKVVKGGRRFRFAALVVVGDKNG
                     HVGFGTGKAQEVPEAIRKAVEDAKKNLIEVPMVGTTIPHEIIGRFGAGNILLKPASEG
                     TGVIAGGPVRAVLELAGVADILSKSLGSNTPINMIRATLQGLSELKRAEDVAKLRGKS
                     VEELLG*"
                     /label="rpsE CDS"
     gene            142952..143452
                     /gene="rpsE"
                     /locus_tag="BSU_01330"
                     /old_locus_tag="BSU01330"
                     /label="rpsE gene"
     CDS             143466..143645
                     /gene="rpmD"
                     /locus_tag="BSU_01340"
                     /old_locus_tag="BSU01340"
                     /function="16.2: Construct biomass (Anabolism)"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 2a: Function from experimental evidences
                     in other organisms; PubMedId: 12682299; Product type s :
                     structure"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosomal protein L30 (BL27)"
                     /protein_id="NP_388015.1"
                     /db_xref="EnsemblGenomes-Gn:BSU01340"
                     /db_xref="EnsemblGenomes-Tr:CAB11910"
                     /db_xref="GOA:P19947"
                     /db_xref="InterPro:IPR005996"
                     /db_xref="InterPro:IPR016082"
                     /db_xref="InterPro:IPR018038"
                     /db_xref="InterPro:IPR036919"
                     /db_xref="PDB:3J3V"
                     /db_xref="PDB:3J9W"
                     /db_xref="PDB:5NJT"
                     /db_xref="SubtiList:BG10443"
                     /db_xref="UniProtKB/Swiss-Prot:P19947"
                     /translation="MAKLEITLKRSVIGRPEDQRVTVRTLGLKKTNQTVVHEDNAAIR
                     GMINKVSHLVSVKEQ*"
                     /label="rpmD CDS"
     gene            143466..143645
                     /gene="rpmD"
                     /locus_tag="BSU_01340"
                     /old_locus_tag="BSU01340"
                     /label="rpmD gene"
     CDS             143676..144116
                     /gene="rplO"
                     /locus_tag="BSU_01350"
                     /old_locus_tag="BSU01350"
                     /function="16.2: Construct biomass (Anabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:12682299, 15855514, 23002217"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 12682299, 15855514,
                     23002217; Product type s: structure"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosomal protein L15"
                     /protein_id="NP_388016.1"
                     /db_xref="EnsemblGenomes-Gn:BSU01350"
                     /db_xref="EnsemblGenomes-Tr:CAB11911"
                     /db_xref="GOA:P19946"
                     /db_xref="InterPro:IPR001196"
                     /db_xref="InterPro:IPR005749"
                     /db_xref="InterPro:IPR021131"
                     /db_xref="InterPro:IPR030878"
                     /db_xref="InterPro:IPR036227"
                     /db_xref="PDB:3J3V"
                     /db_xref="PDB:3J3W"
                     /db_xref="PDB:3J9W"
                     /db_xref="PDB:5NJT"
                     /db_xref="SubtiList:BG10444"
                     /db_xref="UniProtKB/Swiss-Prot:P19946"
                     /translation="MKLHELKPSEGSRKTRNRVGRGIGSGNGKTAGKGHKGQNARSGG
                     GVRPGFEGGQMPLFQRLPKRGFTNINRKEYAVVNLDKLNGFAEGTEVTPELLLETGVI
                     SKLNAGVKILGNGKLEKKLTVKANKFSASAKEAVEAAGGTAEVI*"
                     /label="rplO CDS"
     gene            143676..144116
                     /gene="rplO"
                     /locus_tag="BSU_01350"
                     /old_locus_tag="BSU01350"
                     /label="rplO gene"
     CDS             144118..145413
                     /gene="secY"
                     /locus_tag="BSU_01360"
                     /old_locus_tag="BSU01360"
                     /function="16.1: Circulate"
                     /function="16.2: Construct biomass (Anabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:9917412, 15341641, 15849754, 16850406, 23852076,
                     22720735, 27336478"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 9917412, 15341641,
                     15849754, 16850406, 23852076, 22720735, 27336478; Product
                     type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit"
                     /protein_id="NP_388017.1"
                     /db_xref="EnsemblGenomes-Gn:BSU01360"
                     /db_xref="EnsemblGenomes-Tr:CAB11912"
                     /db_xref="GOA:P16336"
                     /db_xref="InterPro:IPR002208"
                     /db_xref="InterPro:IPR023201"
                     /db_xref="InterPro:IPR026593"
                     /db_xref="InterPro:IPR030659"
                     /db_xref="SubtiList:BG10445"
                     /db_xref="UniProtKB/Swiss-Prot:P16336"
                     /translation="MFKTISNFMRVSDIRNKIIFTLLMLIVFRIGAFIPVPYVNAEAL
                     QAQSQMGVFDLLNTFGGGALYQFSIFAMGITPYITASIIIQLLQMDVVPKFTEWSKQG
                     EVGRRKLAQFTRYFTIVLGFIQALGMSYGFNNLANGMLIEKSGVSTYLIIALVLTGGT
                     AFLMWLGEQITSHGVGNGISIIIFAGIVSSIPKTIGQIYETQFVGSNDQLFIHIVKVA
                     LLVIAILAVIVGVIFIQQAVRKIAIQYAKGTGRSPAGGGQSTHLPLKVNPAGVIPVIF
                     AVAFLITPRTIASFFGTNDVTKWIQNNFDNTHPVGMAIYVALIIAFTYFYAFVQVNPE
                     QMADNLKKQGGYIPGVRPGKMTQDRITSILYRLTFVGSIFLAVISILPIFFIQFAGLP
                     QSAQIGGTSLLIVVGVALETMKQLESQLVKRNYRGFMKN*"
                     /label="secY CDS"
     gene            144118..145413
                     /gene="secY"
                     /locus_tag="BSU_01360"
                     /old_locus_tag="BSU01360"
                     /label="secY gene"
     CDS             145468..146121
                     /gene="adk"
                     /locus_tag="BSU_01370"
                     /old_locus_tag="BSU01370"
                     /EC_number="2.7.4.3"
                     /function="16.2: Construct biomass (Anabolism)"
                     /function="16.7: Manage energy"
                     /experiment="publication(s) with functional evidences,
                     PMID:8061005, 8288548, 9056261, 9715904, 11106368,
                     16452168"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 8061005, 8288548,
                     9056261, 9715904, 11106368, 16452168; Product type e :
                     enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="adenylate kinase"
                     /protein_id="NP_388018.1"
                     /db_xref="EnsemblGenomes-Gn:BSU01370"
                     /db_xref="EnsemblGenomes-Tr:CAB11913"
                     /db_xref="GOA:P16304"
                     /db_xref="InterPro:IPR000850"
                     /db_xref="InterPro:IPR006259"
                     /db_xref="InterPro:IPR007862"
                     /db_xref="InterPro:IPR027417"
                     /db_xref="InterPro:IPR033690"
                     /db_xref="PDB:1P3J"
                     /db_xref="PDB:2EU8"
                     /db_xref="PDB:2OO7"
                     /db_xref="PDB:2ORI"
                     /db_xref="PDB:2OSB"
                     /db_xref="PDB:2P3S"
                     /db_xref="PDB:2QAJ"
                     /db_xref="PDB:3DKV"
                     /db_xref="PDB:3DL0"
                     /db_xref="PDB:4MKF"
                     /db_xref="PDB:4MKG"
                     /db_xref="PDB:4MKH"
                     /db_xref="PDB:4QBF"
                     /db_xref="PDB:4QBG"
                     /db_xref="PDB:4TYP"
                     /db_xref="PDB:4TYQ"
                     /db_xref="SubtiList:BG10446"
                     /db_xref="UniProtKB/Swiss-Prot:P16304"
                     /translation="MNLVLMGLPGAGKGTQGERIVEDYGIPHISTGDMFRAAMKEETP
                     LGLEAKSYIDKGELVPDEVTIGIVKERLGKDDCERGFLLDGFPRTVAQAEALEEILEE
                     YGKPIDYVINIEVDKDVLMERLTGRRICSVCGTTYHLVFNPPKTPGICDKDGGELYQR
                     ADDNEETVSKRLEVNMKQTQPLLDFYSEKGYLANVNGQQDIQDVYADVKDLLGGLKK*
                     "
                     /label="adk CDS"
     gene            145468..146121
                     /gene="adk"
                     /locus_tag="BSU_01370"
                     /old_locus_tag="BSU01370"
                     /label="adk gene"
     CDS             146118..146864
                     /gene="mapA"
                     /locus_tag="BSU_01380"
                     /old_locus_tag="BSU01380"
                     /EC_number="3.4.11.18"
                     /function="16.11: Scavenge (Catabolism)"
                     /function="16.6: Maintain"
                     /function="16.2: Construct biomass (Anabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:16207374, 22720735"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 16207374, 22720735;
                     Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="methionine aminopeptidase"
                     /protein_id="NP_388019.1"
                     /db_xref="EnsemblGenomes-Gn:BSU01380"
                     /db_xref="EnsemblGenomes-Tr:CAB11914"
                     /db_xref="GOA:P19994"
                     /db_xref="InterPro:IPR000994"
                     /db_xref="InterPro:IPR001714"
                     /db_xref="InterPro:IPR002467"
                     /db_xref="InterPro:IPR036005"
                     /db_xref="SubtiList:BG10447"
                     /db_xref="UniProtKB/Swiss-Prot:P19994"
                     /translation="MIICKTPRELGIMREAGRIVALTHEELKKHIKPGISTKELDQIA
                     ERFIKKQGAIPSFKGYNGFRGSICVSVNEELVHGIPGSRVLKDGDIISIDIGAKLNGY
                     HGDSAWTYPVGNISDDDKKLLEVTEESLYKGLQEAKPGERLSNISHAIQTYVENEQFS
                     VVREYVGHGVGQDLHEDPQIPHYGPPNKGPRLKPGMVLAIEPMVNAGSRYVKTLADNW
                     TVVTVDGKKCAHFEHTIAITETGFDILTRV*"
                     /label="mapA CDS"
     gene            146118..146864
                     /gene="mapA"
                     /locus_tag="BSU_01380"
                     /old_locus_tag="BSU01380"
                     /label="mapA gene"
     CDS             146903..147127
                     /gene="ybzG"
                     /locus_tag="BSU_01389"
                     /old_locus_tag="BSU01389"
                     /function="16.2: Construct biomass (Anabolism)"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 17157877; Product type
                     f: factor"
                     /codon_start=1
                     /transl_table=11
                     /product="putative ribosome binding protein"
                     /protein_id="YP_003097669.1"
                     /db_xref="EnsemblGenomes-Gn:BSU01389"
                     /db_xref="EnsemblGenomes-Tr:CAX52539"
                     /db_xref="UniProtKB/Swiss-Prot:C0H3S8"
                     /translation="MIGQKAWVNIGKTEFILLLVVGILTIINVLTADGEKRTFHSPKK
                     KNINHLTLYDCVSPEVQNSINETGRVTNFF*"
                     /label="ybzG CDS"
     gene            146903..147127
                     /gene="ybzG"
                     /locus_tag="BSU_01389"
                     /old_locus_tag="BSU01389"
                     /label="ybzG gene"
     CDS             147176..147394
                     /gene="infA"
                     /locus_tag="BSU_01390"
                     /old_locus_tag="BSU01390"
                     /function="16.3: Control"
                     /function="16.2: Construct biomass (Anabolism)"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 2a: Function from experimental evidences
                     in other organisms; PubMedId: 9868784, 20477873, 22720735;
                     Product type f: factor"
                     /codon_start=1
                     /transl_table=11
                     /product="initiation factor IF-I"
                     /protein_id="NP_388020.1"
                     /db_xref="EnsemblGenomes-Gn:BSU01390"
                     /db_xref="EnsemblGenomes-Tr:CAB11915"
                     /db_xref="GOA:P20458"
                     /db_xref="InterPro:IPR004368"
                     /db_xref="InterPro:IPR006196"
                     /db_xref="InterPro:IPR012340"
                     /db_xref="InterPro:IPR022967"
                     /db_xref="SubtiList:BG11043"
                     /db_xref="UniProtKB/Swiss-Prot:P20458"
                     /translation="MAKDDVIEVEGTIVETLPNAMFKVELENGHTVLAHVSGKIRMHF
                     IRILPGDKVTVELSPYDLTRGRITYRYK*"
                     /label="infA CDS"
     gene            147176..147394
                     /gene="infA"
                     /locus_tag="BSU_01390"
                     /old_locus_tag="BSU01390"
                     /label="infA gene"
     CDS             147428..147541
                     /gene="rpmJ"
                     /locus_tag="BSU_01400"
                     /old_locus_tag="BSU01400"
                     /function="16.2: Construct biomass (Anabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:1783905, 23002217, 24335279"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 1783905, 23002217,
                     24335279; Product type f: factor"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosomal protein L36 (ribosomal protein B)"
                     /protein_id="NP_388021.1"
                     /db_xref="EnsemblGenomes-Gn:BSU01400"
                     /db_xref="EnsemblGenomes-Tr:CAB11916"
                     /db_xref="GOA:P20278"
                     /db_xref="InterPro:IPR000473"
                     /db_xref="InterPro:IPR035977"
                     /db_xref="PDB:3J9W"
                     /db_xref="PDB:5NJT"
                     /db_xref="SubtiList:BG11042"
                     /db_xref="UniProtKB/Swiss-Prot:P20278"
                     /translation="MKVRPSVKPICEKCKVIRRKGKVMVICENPKHKQKQG*"
                     /label="rpmJ CDS"
     gene            147428..147541
                     /gene="rpmJ"
                     /locus_tag="BSU_01400"
                     /old_locus_tag="BSU01400"
                     /label="rpmJ gene"
     CDS             147564..147929
                     /gene="rpsM"
                     /locus_tag="BSU_01410"
                     /old_locus_tag="BSU01410"
                     /function="16.2: Construct biomass (Anabolism)"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 2a: Function from experimental evidences
                     in other organisms; PubMedId: 12682299, 22720735; Product
                     type s: structure"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosomal protein S13"
                     /protein_id="NP_388022.2"
                     /db_xref="EnsemblGenomes-Gn:BSU01410"
                     /db_xref="EnsemblGenomes-Tr:CAB11917"
                     /db_xref="GOA:P20282"
                     /db_xref="InterPro:IPR001892"
                     /db_xref="InterPro:IPR010979"
                     /db_xref="InterPro:IPR018269"
                     /db_xref="InterPro:IPR019980"
                     /db_xref="InterPro:IPR027437"
                     /db_xref="PDB:3J9W"
                     /db_xref="PDB:5NJT"
                     /db_xref="SubtiList:BG10730"
                     /db_xref="UniProtKB/Swiss-Prot:P20282"
                     /translation="MARIAGVDIPRDKRVVISLTYIFGIGRTTAQQVLKEAGVSEDTR
                     VRDLTEEELGKIRDIIDKLKVEGDLRREVSLNIKRLIEIGSYRGIRHRRGLPVRGQNS
                     KNNARTRKGPRRTVANKKK*"
                     /label="rpsM CDS"
     gene            147564..147929
                     /gene="rpsM"
                     /locus_tag="BSU_01410"
                     /old_locus_tag="BSU01410"
                     /label="rpsM gene"
     CDS             147950..148345
                     /gene="rpsK"
                     /locus_tag="BSU_01420"
                     /old_locus_tag="BSU01420"
                     /function="16.2: Construct biomass (Anabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:10217780, 12682299, 22720735"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 10217780, 12682299,
                     22720735; Product type s: structure"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosomal protein S11 (BS11)"
                     /protein_id="NP_388023.1"
                     /db_xref="EnsemblGenomes-Gn:BSU01420"
                     /db_xref="EnsemblGenomes-Tr:CAB11918"
                     /db_xref="GOA:P04969"
                     /db_xref="InterPro:IPR001971"
                     /db_xref="InterPro:IPR018102"
                     /db_xref="InterPro:IPR019981"
                     /db_xref="InterPro:IPR036967"
                     /db_xref="PDB:3J9W"
                     /db_xref="PDB:5NJT"
                     /db_xref="SubtiList:BG10731"
                     /db_xref="UniProtKB/Swiss-Prot:P04969"
                     /translation="MAAARKSNTRKRRVKKNIESGIAHIRSTFNNTIVTITDTHGNAI
                     SWSSAGALGFRGSRKSTPFAAQMAAETAAKGSIEHGLKTLEVTVKGPGSGREAAIRAL
                     QAAGLEVTAIRDVTPVPHNGCRPPKRRRV*"
                     /label="rpsK CDS"
     gene            147950..148345
                     /gene="rpsK"
                     /locus_tag="BSU_01420"
                     /old_locus_tag="BSU01420"
                     /label="rpsK gene"
     S_feature       148346..148521
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_148755_148930"
                     /HighExp="G135, dia5, Lbexp, S0, aero, dia0, T-4.40H,
                     G150, Paraq, C30"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig=1
                     /TUlongSig="SigA, SigA, SigA, SigA, SigA, SigA, SigWXY,
                     SigA, SigA"
                     /TUlongPSig="1, 1, 0.997, 1, 1, 0.999, 1, 1, 0.947"
                     /label="S56"
     CDS             148522..149466
                     /gene="rpoA"
                     /locus_tag="BSU_01430"
                     /old_locus_tag="BSU01430"
                     /EC_number="2.7.7.6"
                     /function="16.2: Construct biomass (Anabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:1484484, 6811591, 9594570, 10972808, 12682299,
                     22720735"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 1484484, 6811591,
                     9594570, 10972808, 12682299, 22720735; Product type e :
                     enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase (alpha subunit)"
                     /protein_id="NP_388024.1"
                     /db_xref="EnsemblGenomes-Gn:BSU01430"
                     /db_xref="EnsemblGenomes-Tr:CAB11919"
                     /db_xref="GOA:P20429"
                     /db_xref="InterPro:IPR011260"
                     /db_xref="InterPro:IPR011262"
                     /db_xref="InterPro:IPR011263"
                     /db_xref="InterPro:IPR011773"
                     /db_xref="InterPro:IPR036603"
                     /db_xref="InterPro:IPR036643"
                     /db_xref="PDB:1Z3E"
                     /db_xref="PDB:3GFK"
                     /db_xref="PDB:3IHQ"
                     /db_xref="SubtiList:BG10732"
                     /db_xref="UniProtKB/Swiss-Prot:P20429"
                     /translation="MIEIEKPKIETVEISDDAKFGKFVVEPLERGYGTTLGNSLRRIL
                     LSSLPGAAVTSIQIDGVLHEFSTIEGVVEDVTTIILHIKKLALKIYSDEEKTLEIDVQ
                     GEGTVTAADITHDSDVEILNPDLHIATLGENASFRVRLTAQRGRGYTPADANKRDDQP
                     IGVIPIDSIYTPVSRVSYQVENTRVGQVANYDKLTLDVWTDGSTGPKEAIALGSKILT
                     EHLNIFVGLTDEAQHAEIMVEKEEDQKEKVLEMTIEELDLSVRSYNCLKRAGINTVQE
                     LANKTEEDMMKVRNLGRKSLEEVKAKLEELGLGLRKDD*"
                     /label="rpoA CDS"
     gene            148522..149466
                     /gene="rpoA"
                     /locus_tag="BSU_01430"
                     /old_locus_tag="BSU01430"
                     /label="rpoA gene"
     CDS             149544..149906
                     /gene="rplQ"
                     /locus_tag="BSU_01440"
                     /old_locus_tag="BSU01440"
                     /function="16.2: Construct biomass (Anabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:6801428, 10717392, 12682299"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 6801428, 10717392,
                     12682299; Product type s: structure"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosomal protein L17 (BL15)"
                     /protein_id="NP_388025.1"
                     /db_xref="EnsemblGenomes-Gn:BSU01440"
                     /db_xref="EnsemblGenomes-Tr:CAB11920"
                     /db_xref="GOA:P20277"
                     /db_xref="InterPro:IPR000456"
                     /db_xref="InterPro:IPR036373"
                     /db_xref="PDB:3J3V"
                     /db_xref="PDB:3J3W"
                     /db_xref="PDB:3J9W"
                     /db_xref="PDB:5NJT"
                     /db_xref="SubtiList:BG11041"
                     /db_xref="UniProtKB/Swiss-Prot:P20277"
                     /translation="MSYRKLGRTSAQRKAMLRDLTTDLIINERIETTETRAKELRSVV
                     EKMITLGKRGDLHARRQAAAYIRNEVANEENNQDALQKLFSDIATRYEERQGGYTRIM
                     KLGPRRGDGAPMAIIELV*"
                     /label="rplQ CDS"
     gene            149544..149906
                     /gene="rplQ"
                     /locus_tag="BSU_01440"
                     /old_locus_tag="BSU01440"
                     /label="rplQ gene"
     downshifts      149908
                     /Source="Nicolas_upshifts"
                     /id="D52"
                     /incds=0
                     /nref=171
                     /ntot=259
                     /MaxReadThrough="7.50771"
                     /MaxDrop="5.4374"
                     /score="2.32634618"
                     /energy="-10.5"
                     /TU="U98"
                     /idTUdmin="U98"
                     /TUdmin="-5577"
                     /isTUend="FALSE"
                     /label="downshifts"
     S_feature       149953..150033
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_150362_150442"
                     /HighExp="Cold, G180, G135, G150, H2O2, S0, C30, Oxctl,
                     Paraq, Lbexp"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig=1
                     /TUlongSig="SigA, SigA, SigA, SigA, SigA, SigA, SigWXY,
                     SigA, SigA"
                     /TUlongPSig="1, 1, 0.997, 1, 1, 0.999, 1, 1, 0.947"
                     /label="S57"
     CDS             150034..150879
                     /gene="ecfA"
                     /locus_tag="BSU_01450"
                     /old_locus_tag="BSU01450"
                     /function="16.1: Circulate"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 2a: Function from experimental evidences
                     in other organisms; PubMedId: 12110480, 21135102,
                     26052893; Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="energizing coupling factor of ABC influx
                     transporter (ATP-binding protein)"
                     /protein_id="NP_388026.2"
                     /db_xref="EnsemblGenomes-Gn:BSU01450"
                     /db_xref="EnsemblGenomes-Tr:CAB11921"
                     /db_xref="GOA:P40735"
                     /db_xref="InterPro:IPR003439"
                     /db_xref="InterPro:IPR003593"
                     /db_xref="InterPro:IPR015856"
                     /db_xref="InterPro:IPR017871"
                     /db_xref="InterPro:IPR027417"
                     /db_xref="InterPro:IPR030947"
                     /db_xref="SubtiList:BG11067"
                     /db_xref="UniProtKB/Swiss-Prot:P40735"
                     /translation="MNQNQLISVEDIVFRYRKDAERRALDGVSLQVYEGEWLAIVGHN
                     GSGKSTLARALNGLILPESGDIEVAGIQLTEESVWEVRKKIGMVFQNPDNQFVGTTVR
                     DDVAFGLENNGVPREEMIERVDWAVKQVNMQDFLDQEPHHLSGGQKQRVAIAGVIAAR
                     PDIIILDEATSMLDPIGREEVLETVRHLKEQGMATVISITHDLNEAAKADRIIVMNGG
                     KKYAEGPPEEIFKLNKELVRIGLDLPFSFQLSQLLRENGLALEENHLTQEGLVKELWT
                     LQSKM*"
                     /label="ecfA CDS"
     gene            150034..150879
                     /gene="ecfA"
                     /locus_tag="BSU_01450"
                     /old_locus_tag="BSU01450"
                     /label="ecfA gene"
     CDS             150894..151724
                     /gene="ecfAB"
                     /locus_tag="BSU_01460"
                     /old_locus_tag="BSU01460"
                     /function="16.1: Circulate"
                     /function="16.8: Protect"
                     /experiment="publication(s) with functional evidences,
                     PMID:12110480, 21135102, 26052893"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 12110480, 21135102,
                     26052893; Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="energizing coupling factor of ABC influx
                     transporter (ATP-binding protein)"
                     /protein_id="NP_388027.1"
                     /db_xref="EnsemblGenomes-Gn:BSU01460"
                     /db_xref="EnsemblGenomes-Tr:CAB11922"
                     /db_xref="GOA:P70970"
                     /db_xref="InterPro:IPR003439"
                     /db_xref="InterPro:IPR003593"
                     /db_xref="InterPro:IPR015856"
                     /db_xref="InterPro:IPR017871"
                     /db_xref="InterPro:IPR027417"
                     /db_xref="InterPro:IPR030946"
                     /db_xref="SubtiList:BG11989"
                     /db_xref="UniProtKB/Swiss-Prot:P70970"
                     /translation="MKTPFERLALYDINASIKEGSYVAVIGHTGSGKSTLLQHLNGLL
                     KPTKGQISLGSTVIQAGKKNKDLKKLRKKVGIVFQFPEHQLFEETVLKDISFGPMNFG
                     VKKEDAEQKAREMLQLVGLSEELLDRSPFELSGGQMRRVAIAGVLAMDPEVLVLDEPT
                     AGLDPRGRKEIMDMFYELHQRGNLTTILVTHSMEDAAAYADEMIVMHKGTIQASGSPR
                     DLFLKGEEMAGWGLDLPETIKFQRHLEAALGVRFNEPMLTIEDAAAEIRALFQGEKTL
                     *"
                     /label="ecfAB CDS"
     gene            150894..151724
                     /gene="ecfAB"
                     /locus_tag="BSU_01460"
                     /old_locus_tag="BSU01460"
                     /label="ecfAB gene"
     CDS             151721..152518
                     /gene="ecfT"
                     /locus_tag="BSU_01470"
                     /old_locus_tag="BSU01470"
                     /function="16.1: Circulate"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 2a: Function from experimental evidences
                     in other organisms; PubMedId: 15849754, 16850406,
                     18931129, 21135102, 26052893; Product type t :
                     transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="component of the influx ECF transporters"
                     /protein_id="NP_388028.2"
                     /db_xref="EnsemblGenomes-Gn:BSU01470"
                     /db_xref="EnsemblGenomes-Tr:CAB11923"
                     /db_xref="GOA:P70972"
                     /db_xref="InterPro:IPR003339"
                     /db_xref="InterPro:IPR024919"
                     /db_xref="SubtiList:BG11990"
                     /db_xref="UniProtKB/Swiss-Prot:P70972"
                     /translation="MMDSMIIGKYVPGTSLVHRLDPRTKLITIFLFVCIVFLANNVQT
                     YALLGLFTIGVVSLTRVPFSFLMKGLKPIIWIVLFTFLLHILMTHEGPIIFQIGFFKV
                     YEGGLVQGIFISLRFVYLILITTLLTLTTTPIEITDGMEQLLNPLKKLKLPVHELALM
                     MSISLRFIPTLMEETDKIMKAQMARGVDFTSGPVKERVKAIVPLLVPLFVSAFKRAEE
                     LAVAMEARGYQGGEGRTKYRKLVWTGKDTSVIVSLIVLAALLFFLRA*"
                     /label="ecfT CDS"
     gene            151721..152518
                     /gene="ecfT"
                     /locus_tag="BSU_01470"
                     /old_locus_tag="BSU01470"
                     /label="ecfT gene"
     CDS             152528..153271
                     /gene="truA"
                     /locus_tag="BSU_01480"
                     /old_locus_tag="BSU01480"
                     /EC_number="5.4.99.12"
                     /function="16.6: Maintain"
                     /function="16.2: Construct biomass (Anabolism)"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 2a: Function from experimental evidences
                     in other organisms; PubMedId: 10529181, 15353568,
                     17114947, 17466622; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA pseudouridine (38-40) synthase"
                     /protein_id="NP_388029.2"
                     /db_xref="EnsemblGenomes-Gn:BSU01480"
                     /db_xref="EnsemblGenomes-Tr:CAB11924"
                     /db_xref="GOA:P70973"
                     /db_xref="InterPro:IPR001406"
                     /db_xref="InterPro:IPR020095"
                     /db_xref="InterPro:IPR020097"
                     /db_xref="InterPro:IPR020103"
                     /db_xref="SubtiList:BG11992"
                     /db_xref="UniProtKB/Swiss-Prot:P70973"
                     /translation="MRLKCTISYDGHLFNGYQVQPGKRTVQDELEKALAVLHKSKDRI
                     PVVSSGRTDSGVHAAGQVIHFDTPLSIPAERWPYALNALLPDDIAVKQAEIADDGFHA
                     RFSAVKKEYRYFVYTEKHPDVFKRHYAYHFSYRLNVQDMREAAKHLIGTHDFTSFCAA
                     KTEVQDKVRTIYELDWTETADGLQMRITGSGFLYNMVRIIAGTLLDAGIGKISPDEVK
                     SMLEAKDREAAGRTAPGHGLYLWNVYYDN*"
                     /label="truA CDS"
     gene            152528..153271
                     /gene="truA"
                     /locus_tag="BSU_01480"
                     /old_locus_tag="BSU01480"
                     /label="truA gene"
     S_feature       complement(152630..153098)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_153039_153507_c"
                     /HighExp="S6, S8, S7, C30, G135, BT, S5, C90, M/G, Pyr"
                     /AntisenseName="truA"
                     /AntisenseCor="-0.30232258010971202"
                     /AntisenseRegPval="-6.4"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigK"
                     /TUshortPSig=1
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S58"
     promotor_-35    152763..152768
                     /Source="Nicolas_upshift_promotors"
                     /id="U100"
                     /multdbtbs="-"
                     /comp="M10"
                     /sig="Sig-"
                     /pcomp="0.478521478521479"
                     /psig="0.478521478521479"
                     /xcortree=2469
                     /SigmaFactorBS="cggctgagagatggccatatgCCTTAAatgcactgcttccgG
                     ACGATATCGCAGTCAAAcaggcagaaattgcggatgatgggttccatgcacgatttag
                     c"
                     /listShort="NA, rplM, rpsI, S59, ybaJ"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    152783..152800
                     /Source="Nicolas_upshift_promotors"
                     /id="U100"
                     /multdbtbs="-"
                     /comp="M10"
                     /sig="Sig-"
                     /pcomp="0.478521478521479"
                     /psig="0.478521478521479"
                     /xcortree=2469
                     /SigmaFactorBS="cggctgagagatggccatatgCCTTAAatgcactgcttccgG
                     ACGATATCGCAGTCAAAcaggcagaaattgcggatgatgggttccatgcacgatttag
                     c"
                     /listShort="NA, rplM, rpsI, S59, ybaJ"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        152802
                     /Source="Nicolas_upshifts"
                     /id="U100"
                     /multdbtbs="-"
                     /comp="M10"
                     /sig="Sig-"
                     /pcomp="0.478521478521479"
                     /psig="0.478521478521479"
                     /xcortree=2469
                     /SigmaFactorBS="cggctgagagatggccatatgCCTTAAatgcactgcttccgG
                     ACGATATCGCAGTCAAAcaggcagaaattgcggatgatgggttccatgcacgatttag
                     c"
                     /listShort="NA, rplM, rpsI, S59, ybaJ"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-10    complement(153098..153117)
                     /Source="Nicolas_upshift_promotors"
                     /id="U101"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp=1
                     /psig=1
                     /xcortree=1250
                     /SigmaFactorBS="ttcacctcatcgggagaaatttttccaatacctgcatcaagC
                     AAAGTACCCgcaataattctgACCATATTATATAAGAAACCgctgcctgtgatccgca
                     t"
                     /listShort="S58"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(153120)
                     /Source="Nicolas_upshifts"
                     /id="U101"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp=1
                     /psig=1
                     /xcortree=1250
                     /SigmaFactorBS="ttcacctcatcgggagaaatttttccaatacctgcatcaagC
                     AAAGTACCCgcaataattctgACCATATTATATAAGAAACCgctgcctgtgatccgca
                     t"
                     /listShort="S58"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(153130..153139)
                     /Source="Nicolas_upshift_promotors"
                     /id="U101"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp=1
                     /psig=1
                     /xcortree=1250
                     /SigmaFactorBS="ttcacctcatcgggagaaatttttccaatacctgcatcaagC
                     AAAGTACCCgcaataattctgACCATATTATATAAGAAACCgctgcctgtgatccgca
                     t"
                     /listShort="S58"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-35    153291..153297
                     /Source="Nicolas_upshift_promotors"
                     /id="U102"
                     /multdbtbs="-"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp="0.754245754245754"
                     /psig=1
                     /xcortree=2644
                     /SigmaFactorBS="ttactatgacaactaaaccaggtgtataatattttCTTGACA
                     gagtctgcataaagTTATAAGATATCATATGGTAtgtatttcaaccccacgataagcc
                     c"
                     /listShort="NA, rplM, rpsI, S59, ybaJ"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    153312..153331
                     /Source="Nicolas_upshift_promotors"
                     /id="U102"
                     /multdbtbs="-"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp="0.754245754245754"
                     /psig=1
                     /xcortree=2644
                     /SigmaFactorBS="ttactatgacaactaaaccaggtgtataatattttCTTGACA
                     gagtctgcataaagTTATAAGATATCATATGGTAtgtatttcaaccccacgataagcc
                     c"
                     /listShort="NA, rplM, rpsI, S59, ybaJ"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        153316
                     /Source="Nicolas_upshifts"
                     /id="U102"
                     /multdbtbs="-"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp="0.754245754245754"
                     /psig=1
                     /xcortree=2644
                     /SigmaFactorBS="ttactatgacaactaaaccaggtgtataatattttCTTGACA
                     gagtctgcataaagTTATAAGATATCATATGGTAtgtatttcaaccccacgataagcc
                     c"
                     /listShort="NA, rplM, rpsI, S59, ybaJ"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     misc_RNA        153328..153384
                     /gene="ldlM"
                     /locus_tag="BSU_misc_RNA_4"
                     /product="putative L13_leader"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; Product type n: RNA"
                     /label="ldlM RNA"
     gene            153328..153384
                     /gene="ldlM"
                     /locus_tag="BSU_misc_RNA_4"
                     /label="ldlM gene"
     CDS             153433..153870
                     /gene="rplM"
                     /locus_tag="BSU_01490"
                     /old_locus_tag="BSU01490"
                     /function="16.2: Construct biomass (Anabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:10781545, 12682299, 23504016, 22720735"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 10781545, 12682299,
                     23504016, 22720735; Product type s: structure"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosomal protein L13"
                     /protein_id="NP_388030.2"
                     /db_xref="EnsemblGenomes-Gn:BSU01490"
                     /db_xref="EnsemblGenomes-Tr:CAB11925"
                     /db_xref="GOA:P70974"
                     /db_xref="InterPro:IPR005822"
                     /db_xref="InterPro:IPR005823"
                     /db_xref="InterPro:IPR023563"
                     /db_xref="InterPro:IPR036899"
                     /db_xref="PDB:3J3V"
                     /db_xref="PDB:3J3W"
                     /db_xref="PDB:3J9W"
                     /db_xref="PDB:5NJT"
                     /db_xref="SubtiList:BG11970"
                     /db_xref="UniProtKB/Swiss-Prot:P70974"
                     /translation="MRTTPMANASTIERKWLVVDAAGKTLGRLSSEVAAILRGKHKPT
                     YTPHVDTGDHVIIINAEKIELTGKKLTDKIYYRHTQHPGGLKSRTALEMRTNYPEKML
                     ELAIKGMLPKGSLGRQMFKKLNVYRGSEHPHEAQKPEVYELRG*"
                     /label="rplM CDS"
     gene            153433..153870
                     /gene="rplM"
                     /locus_tag="BSU_01490"
                     /old_locus_tag="BSU01490"
                     /label="rplM gene"
     CDS             153891..154283
                     /gene="rpsI"
                     /locus_tag="BSU_01500"
                     /old_locus_tag="BSU01500"
                     /function="16.2: Construct biomass (Anabolism)"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 2a: Function from experimental evidences
                     in other organisms; PubMedId: 12682299, 19653700,
                     22720735; Product type s: structure"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosomal protein S9"
                     /protein_id="NP_388031.1"
                     /db_xref="EnsemblGenomes-Gn:BSU01500"
                     /db_xref="EnsemblGenomes-Tr:CAB11926"
                     /db_xref="GOA:P21470"
                     /db_xref="InterPro:IPR000754"
                     /db_xref="InterPro:IPR014721"
                     /db_xref="InterPro:IPR020568"
                     /db_xref="InterPro:IPR020574"
                     /db_xref="InterPro:IPR023035"
                     /db_xref="PDB:3J9W"
                     /db_xref="PDB:5NJT"
                     /db_xref="SubtiList:BG19007"
                     /db_xref="UniProtKB/Swiss-Prot:P21470"
                     /translation="MAQVQYYGTGRRKSSVARVRLVPGEGRIVVNNREISEHIPSAAL
                     IEDIKQPLTLTETAGTYDVLVNVHGGGLSGQAGAIRHGIARALLEADPEYRTTLKRAG
                     LLTRDARMKERKKYGLKGARRAPQFSKR*"
                     /label="rpsI CDS"
     gene            153891..154283
                     /gene="rpsI"
                     /locus_tag="BSU_01500"
                     /old_locus_tag="BSU01500"
                     /label="rpsI gene"
     downshifts      154258
                     /Source="Nicolas_upshifts"
                     /id="D53"
                     /incds=0
                     /nref=262
                     /ntot=282
                     /MaxReadThrough="4.65387"
                     /MaxDrop="8.11906"
                     /score="30.5093496"
                     /energy="-13.3"
                     /TU="U98,U100,U102"
                     /idTUdmin="U98"
                     /TUdmin="-1227"
                     /isTUend="FALSE"
                     /label="downshifts"
     promotor_-35    154400..154407
                     /Source="Nicolas_upshift_promotors"
                     /id="U103"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.97002997002997"
                     /psig="0.999000999001"
                     /xcortree=2051
                     /SigmaFactorBS="ctgaatggacgcttgacggggttaagcaaatTGTTTGTTtat
                     aaacggtctcTTTGTAATAATCATGGTAGAtttcattcttattcaattggaagttcgg
                     t"
                     /listShort="S59, ybaJ"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    154421..154440
                     /Source="Nicolas_upshift_promotors"
                     /id="U103"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.97002997002997"
                     /psig="0.999000999001"
                     /xcortree=2051
                     /SigmaFactorBS="ctgaatggacgcttgacggggttaagcaaatTGTTTGTTtat
                     aaacggtctcTTTGTAATAATCATGGTAGAtttcattcttattcaattggaagttcgg
                     t"
                     /listShort="S59, ybaJ"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     S_feature       154429..154710
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_154838_155119"
                     /HighExp="H2O2, G180, G135, Paraq, Diami, dia15, Oxctl,
                     Cold, Heat, G150"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA, SigA, Sig-, SigA"
                     /TUshortPSig="0.999, 1, 0.479, 1"
                     /TUlongSig="SigA, SigA, SigA, SigA, SigA, SigA, SigWXY,
                     SigA, SigA"
                     /TUlongPSig="1, 1, 0.997, 1, 1, 0.999, 1, 1, 0.947"
                     /label="S59"
     upshifts        154429
                     /Source="Nicolas_upshifts"
                     /id="U103"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.97002997002997"
                     /psig="0.999000999001"
                     /xcortree=2051
                     /SigmaFactorBS="ctgaatggacgcttgacggggttaagcaaatTGTTTGTTtat
                     aaacggtctcTTTGTAATAATCATGGTAGAtttcattcttattcaattggaagttcgg
                     t"
                     /listShort="S59, ybaJ"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     misc_feature    154709..154728
                     /Source="Nicolas_upshift_promotors"
                     /id="U104"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.625374625374625"
                     /psig="0.804195804195804"
                     /xcortree=3216
                     /SigmaFactorBS="gtttttatgaacttttttctaaatatgcaaagggaaagcgat
                     atcaatctagaaataTTTGTTATACTCTATACATTaaagtaaggagaagattcatgaa
                     t"
                     /listShort="ybaJ"
                     /GFF_Attribute="listLong"
                     /label="promotor_single_box"
                     /note="Geneious type: promotor_single_box"
     upshifts        154712
                     /Source="Nicolas_upshifts"
                     /id="U104"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.625374625374625"
                     /psig="0.804195804195804"
                     /xcortree=3216
                     /SigmaFactorBS="gtttttatgaacttttttctaaatatgcaaagggaaagcgat
                     atcaatctagaaataTTTGTTATACTCTATACATTaaagtaaggagaagattcatgaa
                     t"
                     /listShort="ybaJ"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             154747..155514
                     /gene="ybaJ"
                     /locus_tag="BSU_01510"
                     /old_locus_tag="BSU01510"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 26582911; Product type
                     e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative methyltransferase"
                     /protein_id="NP_388032.2"
                     /db_xref="EnsemblGenomes-Gn:BSU01510"
                     /db_xref="EnsemblGenomes-Tr:CAB11927"
                     /db_xref="GOA:P70976"
                     /db_xref="InterPro:IPR013216"
                     /db_xref="InterPro:IPR029063"
                     /db_xref="SubtiList:BG11994"
                     /db_xref="UniProtKB/Swiss-Prot:P70976"
                     /translation="MNALVAHNSKAWDKKVETGNEWTVAVEQQVIEQAKKGNWDIRVT
                     PMKDVPKDWFPPIKGLKVLCLASGGGQQGPVLAAAGADVTVLDNSEKQLNQDRMIAER
                     DGLTIHTVKGSMDDLSVFNDESFDVIVHPVANVFVENVLPVWKEAYRVLKRNGILISG
                     FVNPVVFLFDTELEQQGVLKVKHSIPYADPEDLPKHKVKKLIENNEALEFGHSLEDQI
                     KGQIDAGFIVTGFYEDKGGFVLDQYIHTYSATRSVKV*"
                     /label="ybaJ CDS"
     gene            154747..155514
                     /gene="ybaJ"
                     /locus_tag="BSU_01510"
                     /old_locus_tag="BSU01510"
                     /label="ybaJ gene"
     downshifts      155505
                     /Source="Nicolas_upshifts"
                     /id="D54"
                     /incds=0
                     /nref=215
                     /ntot=251
                     /MaxReadThrough="2.69346"
                     /MaxDrop="6.09641"
                     /score="4.42269359"
                     /energy="-10.3"
                     /TU="NA"
                     /idTUdmin="U100"
                     /TUdmin="-2"
                     /isTUend="TRUE"
                     /label="downshifts"
     promotor_-35    155644..155650
                     /Source="Nicolas_upshift_promotors"
                     /id="U105"
                     /multdbtbs="SigG"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp="0.999000999001"
                     /psig="0.999000999001"
                     /xcortree=864
                     /SigmaFactorBS="ccttcatttgggcgaatttccaaccgaattcgGGCATTGttt
                     catcatccaaaCCTCAAAATAATcggtaaaaggagagtgaatttatatggcagaagta
                     c"
                     /listShort="ybaK, cwlD"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    155665..155676
                     /Source="Nicolas_upshift_promotors"
                     /id="U105"
                     /multdbtbs="SigG"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp="0.999000999001"
                     /psig="0.999000999001"
                     /xcortree=864
                     /SigmaFactorBS="ccttcatttgggcgaatttccaaccgaattcgGGCATTGttt
                     catcatccaaaCCTCAAAATAATcggtaaaaggagagtgaatttatatggcagaagta
                     c"
                     /listShort="ybaK, cwlD"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        155672
                     /Source="Nicolas_upshifts"
                     /id="U105"
                     /multdbtbs="SigG"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp="0.999000999001"
                     /psig="0.999000999001"
                     /xcortree=864
                     /SigmaFactorBS="ccttcatttgggcgaatttccaaccgaattcgGGCATTGttt
                     catcatccaaaCCTCAAAATAATcggtaaaaggagagtgaatttatatggcagaagta
                     c"
                     /listShort="ybaK, cwlD"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             155700..156143
                     /gene="ybaK"
                     /locus_tag="BSU_01520"
                     /old_locus_tag="BSU01520"
                     /function="16.8: Protect"
                     /function="16.6: Maintain"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms; PubMedId: 14679227, 16267290"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved protein of unknown function"
                     /protein_id="NP_388033.1"
                     /db_xref="EnsemblGenomes-Gn:BSU01520"
                     /db_xref="EnsemblGenomes-Tr:CAB11928"
                     /db_xref="GOA:P50862"
                     /db_xref="InterPro:IPR019667"
                     /db_xref="SubtiList:BG11503"
                     /db_xref="UniProtKB/Swiss-Prot:P50862"
                     /translation="MAEVLSFMDVKRQKDFELEKNLLKELSLRQIIQSVKDCLEPLFP
                     FLHDERDIITEGCIDFAIEAYLLGGRFGIFGYYGESMQSISARSAREEEELRMEFFDY
                     LYNWIHEQYATFDKNTVYEAARKFIKDWWTAGFVQREKQCKLRMR*"
                     /label="ybaK CDS"
     gene            155700..156143
                     /gene="ybaK"
                     /locus_tag="BSU_01520"
                     /old_locus_tag="BSU01520"
                     /label="ybaK gene"
     promotor_-35    156143..156148
                     /Source="Nicolas_upshift_promotors"
                     /id="U106"
                     /multdbtbs="SigE"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp=1
                     /psig=1
                     /xcortree=973
                     /SigmaFactorBS="gttcaaagagaaaaacagtgtaagcttcgcatgcggtaATCA
                     TAtttcccgaccctgtcCCATAGTTATGTAATAACGgacaagcgggaggggaagggat
                     g"
                     /listShort="cwlD"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    156164..156182
                     /Source="Nicolas_upshift_promotors"
                     /id="U106"
                     /multdbtbs="SigE"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp=1
                     /psig=1
                     /xcortree=973
                     /SigmaFactorBS="gttcaaagagaaaaacagtgtaagcttcgcatgcggtaATCA
                     TAtttcccgaccctgtcCCATAGTTATGTAATAACGgacaagcgggaggggaagggat
                     g"
                     /listShort="cwlD"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        156165
                     /Source="Nicolas_upshifts"
                     /id="U106"
                     /multdbtbs="SigE"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp=1
                     /psig=1
                     /xcortree=973
                     /SigmaFactorBS="gttcaaagagaaaaacagtgtaagcttcgcatgcggtaATCA
                     TAtttcccgaccctgtcCCATAGTTATGTAATAACGgacaagcgggaggggaagggat
                     g"
                     /listShort="cwlD"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             156203..156916
                     /gene="cwlD"
                     /locus_tag="BSU_01530"
                     /old_locus_tag="BSU01530"
                     /EC_number="3.5.1.28"
                     /function="16.13: Shape"
                     /function="16.8: Protect"
                     /function="16.6: Maintain"
                     /experiment="publication(s) with functional evidences,
                     PMID:14679227, 16267290"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 14679227, 16267290;
                     Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylmuramoyl-L-alanine amidase"
                     /protein_id="NP_388034.1"
                     /db_xref="EnsemblGenomes-Gn:BSU01530"
                     /db_xref="EnsemblGenomes-Tr:CAB11929"
                     /db_xref="GOA:P50864"
                     /db_xref="InterPro:IPR002508"
                     /db_xref="InterPro:IPR014234"
                     /db_xref="SubtiList:BG11514"
                     /db_xref="UniProtKB/Swiss-Prot:P50864"
                     /translation="MRKKLKWLSFLLGFIILLFLFKYQFSNNDSWKPWSLPLSGKIIY
                     LDPGHGGPDGGAVGGKLLEKDVTLEVAFRVRDYLQEQGALVIMTRESDTDLAPEGTKG
                     YSRRKAEDLRQRVKLINHSEAELYISIHLNAIPSQKWSGAQSFYYGKYAENEKVAKYI
                     QDELRRNLENTTRKAKRIHGIYLMQNVTKPGALIEVGFLSNPSEATLLGKPKYQDKVA
                     SSIYKGILRYFTEKGDPPE*"
                     /label="cwlD CDS"
     gene            156203..156916
                     /gene="cwlD"
                     /locus_tag="BSU_01530"
                     /old_locus_tag="BSU01530"
                     /label="cwlD gene"
     upshifts        156961
                     /Source="Nicolas_upshifts"
                     /id="U107"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.965034965034965"
                     /psig="0.998001998001998"
                     /xcortree=3187
                     /SigmaFactorBS="agaccctccggagtaatggagggttttcttgtggttctaagc
                     ataagacacccgccatttatgTATGATATAATAATAATTGTaaacgaatacacaaaag
                     g"
                     /listShort="salA, S61, kbaA, S63, S64, rrnI-16S"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     misc_feature    156964..156983
                     /Source="Nicolas_upshift_promotors"
                     /id="U107"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.965034965034965"
                     /psig="0.998001998001998"
                     /xcortree=3187
                     /SigmaFactorBS="agaccctccggagtaatggagggttttcttgtggttctaagc
                     ataagacacccgccatttatgTATGATATAATAATAATTGTaaacgaatacacaaaag
                     g"
                     /listShort="salA, S61, kbaA, S63, S64, rrnI-16S"
                     /GFF_Attribute="listLong"
                     /label="promotor_single_box"
                     /note="Geneious type: promotor_single_box"
     CDS             157012..158070
                     /gene="salA"
                     /locus_tag="BSU_01540"
                     /old_locus_tag="BSU01540"
                     /function="16.8: Protect"
                     /experiment="publication(s) with functional evidences,
                     PMID:11790741, 15126467, 26094643"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 11790741, 15126467,
                     26094643; Product type r: regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphorylation-dependent (Y327)
                     transcriptionalregulator"
                     /protein_id="NP_388035.1"
                     /db_xref="EnsemblGenomes-Gn:BSU01540"
                     /db_xref="EnsemblGenomes-Tr:CAB11930"
                     /db_xref="GOA:P50863"
                     /db_xref="InterPro:IPR000808"
                     /db_xref="InterPro:IPR019591"
                     /db_xref="InterPro:IPR027417"
                     /db_xref="InterPro:IPR033756"
                     /db_xref="InterPro:IPR034904"
                     /db_xref="SubtiList:BG11494"
                     /db_xref="UniProtKB/Swiss-Prot:P50863"
                     /translation="MIREDEVRKLVGEMREPFLQRPLGELDAVKEIKIKPEKRHISVK
                     VALAKTGTAEQMQIQQEIVNVLKGAGAETVGLRFEELPEETVAKFRAPSAEKKTLLNM
                     DNPPVFLAVASGKGGVGKSTVSVNLAISLARLGKKVGLIDADIYGFSVPDMMGITVRP
                     TIEGEKLLPVERFGVKVMSMGFFVEENAPVVWRGPMLGKMLNNFFHEVEWGEVDYIVL
                     DLPPGTGDVALDVHTMLPSCKEIIVSTPHPTAAFVAARAGSMAIKTDHEVVGVIENMA
                     YYESAKTGEREYVFGKGGGDKLAEELNVPLLGRIPLKQPDWDKDQFAPSVYDENHPIG
                     EIYQDIAKKIDAKMSVQV*"
                     /label="salA CDS"
     gene            157012..158070
                     /gene="salA"
                     /locus_tag="BSU_01540"
                     /old_locus_tag="BSU01540"
                     /label="salA gene"
     S_feature       complement(157641..158105)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_158050_158514_c"
                     /HighExp="S8, S7, S6, S5, C30, S4, C90, nit, ferm, Gly"
                     /AntisenseName="salA"
                     /AntisenseCor="-0.104183954485248"
                     /AntisenseRegPval="-1.1000000000000001"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigGF"
                     /TUshortPSig="0.996"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S60"
     downshifts      158056
                     /Source="Nicolas_upshifts"
                     /id="D55"
                     /incds=0
                     /nref=29
                     /ntot=155
                     /MaxReadThrough="5.44939"
                     /MaxDrop="4.18382"
                     /score="-4.46878413"
                     /energy="-9.1"
                     /TU="U107"
                     /idTUdmin="U106"
                     /TUdmin=1185
                     /isTUend="FALSE"
                     /label="downshifts"
     S_feature       158101..158772
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_158510_159181"
                     /HighExp="Lbtran, H2O2, Cold, Lbstat, dia5, M40t45, M0t90,
                     M40t90, T0.30H, S1"
                     /AntisenseName="gerD"
                     /AntisenseCor="-0.24235509346425901"
                     /AntisenseRegPval="-4.2"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.998"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S61"
     CDS             complement(158106..158663)
                     /gene="gerD"
                     /locus_tag="BSU_01550"
                     /old_locus_tag="BSU01550"
                     /function="16.13: Shape"
                     /function="16.3: Control"
                     /experiment="publication(s) with functional evidences,
                     PMID:17122337, 10618233, 10376819, 24530795"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 17122337, 10618233,
                     10376819, 24530795; Product type f: factor"
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein factor mediating clustering of
                     germination proteins"
                     /protein_id="NP_388036.1"
                     /db_xref="EnsemblGenomes-Gn:BSU01550"
                     /db_xref="EnsemblGenomes-Tr:CAB11931"
                     /db_xref="GOA:P16450"
                     /db_xref="SubtiList:BG10644"
                     /db_xref="UniProtKB/Swiss-Prot:P16450"
                     /translation="MSKAKTLLMSCFLLLSVTACAPKDQAADMDYDQTKKMVVDILKT
                     DDGKKAIKELLNDDAMNEALVIDQDAIKGTIEKTLTSKKGEEFWKNIFEDTDFAEGFA
                     KTLQTEHEKVIKKLMKDPDYQKMLMSVMQDPGMDKKYSQLAKSQEFRSYLEEVINETL
                     SSPLYKKQFEDELKKAAKDTAKESE*"
                     /label="gerD CDS"
     gene            complement(158106..158663)
                     /gene="gerD"
                     /locus_tag="BSU_01550"
                     /old_locus_tag="BSU01550"
                     /label="gerD gene"
     promotor_-10    complement(158695..158706)
                     /Source="Nicolas_upshift_promotors"
                     /id="U108"
                     /multdbtbs="SigG"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp="0.996003996003996"
                     /psig="0.996003996003996"
                     /xcortree=925
                     /SigmaFactorBS="tattcatcccctcaaaaatcgcgaacagcgatattttgttaT
                     GTATAAttccaaacagatgAATCATATTAAAggtaagacaagtatgtgaaaggagctt
                     a"
                     /listShort="gerD, S60"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(158707)
                     /Source="Nicolas_upshifts"
                     /id="U108"
                     /multdbtbs="SigG"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp="0.996003996003996"
                     /psig="0.996003996003996"
                     /xcortree=925
                     /SigmaFactorBS="tattcatcccctcaaaaatcgcgaacagcgatattttgttaT
                     GTATAAttccaaacagatgAATCATATTAAAggtaagacaagtatgtgaaaggagctt
                     a"
                     /listShort="gerD, S60"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(158720..158726)
                     /Source="Nicolas_upshift_promotors"
                     /id="U108"
                     /multdbtbs="SigG"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp="0.996003996003996"
                     /psig="0.996003996003996"
                     /xcortree=925
                     /SigmaFactorBS="tattcatcccctcaaaaatcgcgaacagcgatattttgttaT
                     GTATAAttccaaacagatgAATCATATTAAAggtaagacaagtatgtgaaaggagctt
                     a"
                     /listShort="gerD, S60"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     S_feature       complement(158740..159369)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_159149_159778_c"
                     /HighExp="S3, T5.0H, S4, S8, M9-stat, T4.0H, T3.30H, S7,
                     T3.0H, S6"
                     /AntisenseName="kbaA"
                     /AntisenseCor="7.9344921760152495E-2"
                     /AntisenseRegPval="-0.7"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigEF"
                     /TUshortPSig=1
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S62"
     CDS             158773..159369
                     /gene="kbaA"
                     /locus_tag="BSU_01560"
                     /old_locus_tag="BSU01560"
                     /function="16.3: Control"
                     /experiment="publication(s) with functional evidences,
                     PMID:8576055, 15849754, 16850406"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 8576055, 15849754,
                     16850406; Product type r: regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="inner membrane protein involved in activation
                     ofthe KinB signaling pathway to sporulation"
                     /protein_id="NP_388037.1"
                     /db_xref="EnsemblGenomes-Gn:BSU01560"
                     /db_xref="EnsemblGenomes-Tr:CAB11932"
                     /db_xref="GOA:P16449"
                     /db_xref="InterPro:IPR024164"
                     /db_xref="SubtiList:BG10643"
                     /db_xref="UniProtKB/Swiss-Prot:P16449"
                     /translation="MKSRGLVRFFFSILAVGALITSIVGFALKWGEYRGLFLTFEAGQ
                     IFSVLFWFIGVGMIFSVISQMGFFVFLTVHRFALEILRSSSLWNLLQLFFILFVAFDL
                     MYVRFLFFGESGESLAGYAWLPVFLLIFGVITAYIKQKQSSKKTFVSSLFLMVVITAL
                     EWFPALRVNDEDWLYLMLFPLMACNAFQLLMLPKFAAK*"
                     /label="kbaA CDS"
     gene            158773..159369
                     /gene="kbaA"
                     /locus_tag="BSU_01560"
                     /old_locus_tag="BSU01560"
                     /label="kbaA gene"
     S_feature       159370..160264
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_159779_160673"
                     /HighExp="Lbstat, Lbtran, M0t90, M40t90, H2O2, BC, Glucon,
                     S7, M40t45, S1"
                     /AntisenseName="ybaN"
                     /AntisenseCor="-2.6735901031407501E-2"
                     /AntisenseRegPval="-0.2"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.998"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S63"
     CDS             complement(159370..160134)
                     /gene="pdaB"
                     /locus_tag="BSU_01570"
                     /old_locus_tag="BSU01570"
                     /function="16.8: Protect"
                     /function="16.13: Shape"
                     /experiment="publication(s) with functional evidences,
                     PMID:12662922, 15547282, 15598884"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 12662922, 15547282,
                     15598884; Product type cp: cell process"
                     /codon_start=1
                     /transl_table=11
                     /product="polysaccharide deacetylase involved in
                     sporulation"
                     /protein_id="NP_388038.1"
                     /db_xref="EnsemblGenomes-Gn:BSU01570"
                     /db_xref="EnsemblGenomes-Tr:CAB11933"
                     /db_xref="GOA:P50865"
                     /db_xref="InterPro:IPR002509"
                     /db_xref="InterPro:IPR011330"
                     /db_xref="InterPro:IPR014132"
                     /db_xref="SubtiList:BG11416"
                     /db_xref="UniProtKB/Swiss-Prot:P50865"
                     /translation="MNHFYVWHIKRVKQLIIILIAAFAAASFFYIQRAVPLPVFSTDT
                     GPKAIYKGETDSKDISLTFDISWGDERAEPILNTLKANGIKNATFFLSASWAERHPDT
                     VARIVKDGHQIGSMGYAYKNYANLESSEIKKDMNRAQTAFEKLGVKDIQLLRPPTGQF
                     NKNVLKVAKQYNYTVVHYSVNSQDWTNPGVEKIIDNVTKQVSGGDIILLHASDSAKQT
                     EEALPDIIHQLKEKGLKNVTVGDLIANSDAKSAEVK*"
                     /label="pdaB CDS"
     gene            complement(159370..160134)
                     /gene="pdaB"
                     /locus_tag="BSU_01570"
                     /old_locus_tag="BSU01570"
                     /label="pdaB gene"
     promotor_-10    complement(160165..160183)
                     /Source="Nicolas_upshift_promotors"
                     /id="U109"
                     /multdbtbs="SigE"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp=1
                     /psig=1
                     /xcortree=979
                     /SigmaFactorBS="caacacccaatttaggctgtatgtgaagagacattttatcgG
                     TTATAttcaattgtccatgcTCATAAGATGTAAAACAAGaatgatggacaagataagg
                     a"
                     /listShort="ybaN, S62"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(160185)
                     /Source="Nicolas_upshifts"
                     /id="U109"
                     /multdbtbs="SigE"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp=1
                     /psig=1
                     /xcortree=979
                     /SigmaFactorBS="caacacccaatttaggctgtatgtgaagagacattttatcgG
                     TTATAttcaattgtccatgcTCATAAGATGTAAAACAAGaatgatggacaagataagg
                     a"
                     /listShort="ybaN, S62"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(160199..160204)
                     /Source="Nicolas_upshift_promotors"
                     /id="U109"
                     /multdbtbs="SigE"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp=1
                     /psig=1
                     /xcortree=979
                     /SigmaFactorBS="caacacccaatttaggctgtatgtgaagagacattttatcgG
                     TTATAttcaattgtccatgcTCATAAGATGTAAAACAAGaatgatggacaagataagg
                     a"
                     /listShort="ybaN, S62"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-35    160242..160249
                     /Source="Nicolas_upshift_promotors"
                     /id="U110"
                     /multdbtbs="-"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp=1
                     /psig=1
                     /xcortree=2624
                     /SigmaFactorBS="gataaaatgtctcttcacatacagcctaaattgggtGTTGAC
                     CTtttgataatatccgTGATATATTATTATTCGTCGctgataaacagctgacatcaac
                     t"
                     /listShort="S64, rrnI-16S, rrnI-23S, rrnI-5S, trnI-Asn,
                     trnI-Thr, trnI-Gly, trnI-Arg, trnI-Pro, trnI-Ala,
                     rrnH-16S, rrnH-23S, rrnH-5S, rrnG-16S"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    160264..160283
                     /Source="Nicolas_upshift_promotors"
                     /id="U110"
                     /multdbtbs="-"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp=1
                     /psig=1
                     /xcortree=2624
                     /SigmaFactorBS="gataaaatgtctcttcacatacagcctaaattgggtGTTGAC
                     CTtttgataatatccgTGATATATTATTATTCGTCGctgataaacagctgacatcaac
                     t"
                     /listShort="S64, rrnI-16S, rrnI-23S, rrnI-5S, trnI-Asn,
                     trnI-Thr, trnI-Gly, trnI-Arg, trnI-Pro, trnI-Ala,
                     rrnH-16S, rrnH-23S, rrnH-5S, rrnG-16S"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     S_feature       160266..160483
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_160675_160892"
                     /HighExp="Diami, LBGstat, UNK1, H2O2, MG 15, Oxctl,
                     MG-0.1, BMM, T-1.10H, Paraq"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA, SigA"
                     /TUshortPSig="1, 0.998"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S64"
     upshifts        160266
                     /Source="Nicolas_upshifts"
                     /id="U110"
                     /multdbtbs="-"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp=1
                     /psig=1
                     /xcortree=2624
                     /SigmaFactorBS="gataaaatgtctcttcacatacagcctaaattgggtGTTGAC
                     CTtttgataatatccgTGATATATTATTATTCGTCGctgataaacagctgacatcaac
                     t"
                     /listShort="S64, rrnI-16S, rrnI-23S, rrnI-5S, trnI-Asn,
                     trnI-Thr, trnI-Gly, trnI-Arg, trnI-Pro, trnI-Ala,
                     rrnH-16S, rrnH-23S, rrnH-5S, rrnG-16S"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     rRNA            160484..162037
                     /gene="rrnI-16S"
                     /locus_tag="BSU_rRNA_23"
                     /product="ribosomal RNA-16S"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; Product type n: RNA"
                     /function="16.2: Construct biomass (Anabolism)"
                     /label="rrnI-16S rRNA"
     gene            160484..162037
                     /gene="rrnI-16S"
                     /locus_tag="BSU_rRNA_23"
                     /modified_by="User"
                     /label="rrnI-16S gene"
     Polymorphism    join(160830,160832)
                     /Source="geneious"
                     /ID="SNP_BsDelta6_161240_161239"
                     /Polymorphism_Type="Insertion"
                     /note="SNP between marked nucleotides"
                     /strain="Bacillus subtilis Delta6"
                     /Length=0
                     /Amino_Acid_Change
                     /CDS_Position
                     /Change="C"
                     /Codon_Change
                     /Coverage=45
                     /locus_tag
                     /Protein_Effect
                     /Reference_Frequency
                     /Reference_Nucleotides
                     /Variant_Nucleotides="C"
                     /Variant_P_Value="4.2e-57"
                     /Variant_Raw_Frequency=41
                     /comment="rrnI-16S rRNA"
                     /modified_by="User"
                     /
                     /label="Polymorphism_Delta6"
     rRNA            162202..165129
                     /gene="rrnI-23S"
                     /locus_tag="BSU_rRNA_14"
                     /product="ribosomal RNA-23S"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; Product type n: RNA"
                     /function="16.2: Construct biomass (Anabolism)"
                     /label="rrnI-23S rRNA"
     gene            162202..165129
                     /gene="rrnI-23S"
                     /locus_tag="BSU_rRNA_14"
                     /label="rrnI-23S gene"
     rRNA            165185..165301
                     /gene="rrnI-5S"
                     /locus_tag="BSU_rRNA_15"
                     /product="ribosomal RNA-5S"
                     /note="Evidence 2a: Function from experimental evidences
                     in other organisms; Product type n: RNA"
                     /function="16.2: Construct biomass (Anabolism)"
                     /label="rrnI-5S rRNA"
     gene            165185..165301
                     /gene="rrnI-5S"
                     /locus_tag="BSU_rRNA_15"
                     /label="rrnI-5S gene"
     Polymorphism    join(165341,165342)
                     /Source="geneious"
                     /ID="SNP_BsDelta6_165748_165749"
                     /Polymorphism_Type="Deletion"
                     /note="SNP between marked nucleotides"
                     /strain="Bacillus subtilis Delta6"
                     /Length=2
                     /Amino_Acid_Change
                     /CDS_Position
                     /Change="-TC"
                     /Codon_Change
                     /Coverage="172 -> 174"
                     /locus_tag
                     /Protein_Effect
                     /Reference_Frequency
                     /Reference_Nucleotides="TC"
                     /Variant_Nucleotides
                     /Variant_P_Value="1.5e-307"
                     /Variant_Raw_Frequency=152
                     /comment="BSU_tRNA_23_Asn"
                     /modified_by="User"
                     /
                     /label="Polymorphism_Delta6"
     Polymorphism    join(165342,165344)
                     /Source="geneious"
                     /ID="SNP_BsDelta6_165751_165751"
                     /Polymorphism_Type="SNP (transition)"
                     /note="SNP between marked nucleotides"
                     /strain="Bacillus subtilis Delta6"
                     /Length=1
                     /Amino_Acid_Change
                     /CDS_Position
                     /Change="C -> T"
                     /Codon_Change
                     /Coverage=172
                     /locus_tag
                     /Protein_Effect
                     /Reference_Frequency="1.2%"
                     /Reference_Nucleotides="C"
                     /Variant_Nucleotides="T"
                     /Variant_P_Value=0
                     /Variant_Raw_Frequency=168
                     /comment="BSU_tRNA_23_Asn"
                     /modified_by="User"
                     /
                     /label="Polymorphism_Delta6"
     tRNA            165346..165417
                     /gene="trnI-Asn"
                     /locus_tag="BSU_tRNA_23"
                     /product="tRNA-Asn"
                     /inference="profile:tRNAscan:1.23"
                     /note="transfer RNA-Asn(GUU); Evidence 2a: Function from
                     experimental evidences in other organisms; Product type n:
                     RNA"
                     /function="16.2: Construct biomass (Anabolism)"
                     /label="trnI-Asn tRNA"
     gene            165346..165417
                     /gene="trnI-Asn"
                     /locus_tag="BSU_tRNA_23"
                     /label="trnI-Asn gene"
     Polymorphism    join(165417,165419)
                     /Source="geneious"
                     /ID="SNP_BsDelta6_165826_165825"
                     /Polymorphism_Type="Insertion"
                     /note="SNP between marked nucleotides"
                     /strain="Bacillus subtilis Delta6"
                     /Length=0
                     /Amino_Acid_Change
                     /CDS_Position
                     /Change="C"
                     /Codon_Change
                     /Coverage=163
                     /locus_tag
                     /Protein_Effect
                     /Reference_Frequency
                     /Reference_Nucleotides
                     /Variant_Nucleotides="C"
                     /Variant_P_Value=0
                     /Variant_Raw_Frequency=160
                     /comment="BSU_tRNA_23_Asn"
                     /modified_by="User"
                     /
                     /label="Polymorphism_Delta6"
     tRNA            165423..165495
                     /gene="trnI-Thr"
                     /locus_tag="BSU_tRNA_24"
                     /product="tRNA-Thr"
                     /inference="profile:tRNAscan:1.23"
                     /note="transfer RNA-Thr(GGU); Evidence 2a: Function from
                     experimental evidences in other organisms; Product type n:
                     RNA"
                     /function="16.2: Construct biomass (Anabolism)"
                     /label="trnI-Thr tRNA"
     gene            165423..165495
                     /gene="trnI-Thr"
                     /locus_tag="BSU_tRNA_24"
                     /label="trnI-Thr gene"
     tRNA            165552..165626
                     /gene="trnI-Gly"
                     /locus_tag="BSU_tRNA_25"
                     /product="tRNA-Gly"
                     /inference="profile:tRNAscan:1.23"
                     /note="transfer RNA-Gly(GCC); Evidence 2a: Function from
                     experimental evidences in other organisms; Product type n:
                     RNA"
                     /function="16.2: Construct biomass (Anabolism)"
                     /label="trnI-Gly tRNA"
     gene            165552..165626
                     /gene="trnI-Gly"
                     /locus_tag="BSU_tRNA_25"
                     /label="trnI-Gly gene"
     Polymorphism    join(165630,165632)
                     /Source="geneious"
                     /ID="SNP_BsDelta6_166038_166037"
                     /Polymorphism_Type="Insertion"
                     /note="SNP between marked nucleotides"
                     /strain="Bacillus subtilis Delta6"
                     /Length=0
                     /Amino_Acid_Change
                     /CDS_Position
                     /Change="T"
                     /Codon_Change
                     /Coverage=154
                     /locus_tag
                     /Protein_Effect
                     /Reference_Frequency
                     /Reference_Nucleotides
                     /Variant_Nucleotides="T"
                     /Variant_P_Value=0
                     /Variant_Raw_Frequency=148
                     /comment="-"
                     /modified_by="User"
                     /
                     /label="Polymorphism_Delta6"
     tRNA            165658..165734
                     /gene="trnI-Arg"
                     /locus_tag="BSU_tRNA_26"
                     /product="tRNA-Arg"
                     /inference="profile:tRNAscan:1.23"
                     /note="transfer RNA-Arg(AGC); Evidence 2a: Function from
                     experimental evidences in other organisms; Product type n:
                     RNA"
                     /function="16.2: Construct biomass (Anabolism)"
                     /label="trnI-Arg tRNA"
     gene            165658..165734
                     /gene="trnI-Arg"
                     /locus_tag="BSU_tRNA_26"
                     /label="trnI-Arg gene"
     tRNA            165762..165838
                     /gene="trnI-Pro"
                     /locus_tag="BSU_tRNA_27"
                     /product="tRNA-Pro"
                     /inference="profile:tRNAscan:1.23"
                     /note="Evidence 2a: Function from experimental evidences
                     in other organisms; Product type n: RNA"
                     /function="16.2: Construct biomass (Anabolism)"
                     /label="trnI-Pro tRNA"
     gene            165762..165838
                     /gene="trnI-Pro"
                     /locus_tag="BSU_tRNA_27"
                     /label="trnI-Pro gene"
     tRNA            165847..165922
                     /gene="trnI-Ala"
                     /locus_tag="BSU_tRNA_28"
                     /product="tRNA-Ala"
                     /inference="profile:tRNAscan:1.23"
                     /note="transfer RNA-Ala(UGC); Evidence 2a: Function from
                     experimental evidences in other organisms; Product type n:
                     RNA"
                     /function="16.2: Construct biomass (Anabolism)"
                     /label="trnI-Ala tRNA"
     gene            165847..165922
                     /gene="trnI-Ala"
                     /locus_tag="BSU_tRNA_28"
                     /label="trnI-Ala gene"
     Polymorphism    join(165937,165938)
                     /Source="geneious"
                     /ID="SNP_BsDelta6_166344_166344"
                     /Polymorphism_Type="Deletion"
                     /note="SNP between marked nucleotides"
                     /strain="Bacillus subtilis Delta6"
                     /Length=1
                     /Amino_Acid_Change
                     /CDS_Position
                     /Change="-G"
                     /Codon_Change
                     /Coverage=132
                     /locus_tag
                     /Protein_Effect
                     /Reference_Frequency
                     /Reference_Nucleotides="G"
                     /Variant_Nucleotides
                     /Variant_P_Value="4.9e-75"
                     /Variant_Raw_Frequency=130
                     /comment="-"
                     /modified_by="User"
                     /
                     /label="Polymorphism_Delta6"
     rRNA            166093..167646
                     /gene="rrnH-16S"
                     /locus_tag="BSU_rRNA_16"
                     /product="ribosomal RNA-16S"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; Product type n: RNA"
                     /function="16.2: Construct biomass (Anabolism)"
                     /label="rrnH-16S rRNA"
     gene            166093..167646
                     /gene="rrnH-16S"
                     /locus_tag="BSU_rRNA_16"
                     /label="rrnH-16S gene"
     rRNA            167811..170738
                     /gene="rrnH-23S"
                     /locus_tag="BSU_rRNA_29"
                     /product="ribosomal RNA-23S"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; Product type n: RNA"
                     /function="16.2: Construct biomass (Anabolism)"
                     /label="rrnH-23S rRNA"
     gene            167811..170738
                     /gene="rrnH-23S"
                     /locus_tag="BSU_rRNA_29"
                     /label="rrnH-23S gene"
     rRNA            170794..170911
                     /gene="rrnH-5S"
                     /locus_tag="BSU_rRNA_24"
                     /product="ribosomal RNA-5S"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; Product type n: RNA"
                     /function="16.2: Construct biomass (Anabolism)"
                     /label="rrnH-5S rRNA"
     gene            170794..170911
                     /gene="rrnH-5S"
                     /locus_tag="BSU_rRNA_24"
                     /label="rrnH-5S gene"
     rRNA            171095..172648
                     /gene="rrnG-16S"
                     /locus_tag="BSU_rRNA_25"
                     /product="ribosomal RNA-16S"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; Product type n: RNA"
                     /function="16.2: Construct biomass (Anabolism)"
                     /label="rrnG-16S rRNA"
     gene            171095..172648
                     /gene="rrnG-16S"
                     /locus_tag="BSU_rRNA_25"
                     /label="rrnG-16S gene"
     rRNA            172813..175740
                     /gene="rrnG-23S"
                     /locus_tag="BSU_rRNA_27"
                     /product="ribosomal RNA-23S"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; Product type n: RNA"
                     /function="16.2: Construct biomass (Anabolism)"
                     /label="rrnG-23S rRNA"
     gene            172813..175740
                     /gene="rrnG-23S"
                     /locus_tag="BSU_rRNA_27"
                     /label="rrnG-23S gene"
     rRNA            175796..175914
                     /gene="rrnG-5S"
                     /locus_tag="BSU_rRNA_28"
                     /product="ribosomal RNA-5S"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; Product type n: RNA"
                     /function="16.2: Construct biomass (Anabolism)"
                     /label="rrnG-5S rRNA"
     gene            175796..175914
                     /gene="rrnG-5S"
                     /locus_tag="BSU_rRNA_28"
                     /label="rrnG-5S gene"
     S_feature       175915..176523
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_176316_176924"
                     /HighExp="G180, G135, C30, Oxctl, Paraq, Cold, G150, H2O2,
                     Heat, LBGstat"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="NA"
                     /TUshortPSig="NA"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S65"
     promotor_-35    176491..176495
                     /Source="Nicolas_upshift_promotors"
                     /id="U111"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.95104895104895"
                     /psig=1
                     /xcortree=2510
                     /SigmaFactorBS="tgagccatttttttcttcagcaatcaTCTTGcgtaattgata
                     aaaaTTTATTATGATACTCTTTGTatgacaactccttgcctcaatacaatatactcaa
                     c"
                     /listShort="S66, ybaR"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    176511..176530
                     /Source="Nicolas_upshift_promotors"
                     /id="U111"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.95104895104895"
                     /psig=1
                     /xcortree=2510
                     /SigmaFactorBS="tgagccatttttttcttcagcaatcaTCTTGcgtaattgata
                     aaaaTTTATTATGATACTCTTTGTatgacaactccttgcctcaatacaatatactcaa
                     c"
                     /listShort="S66, ybaR"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     S_feature       176525..176681
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_176926_177082"
                     /HighExp="LBGstat, G180, G135, dia15, C30, Oxctl, LPhT,
                     G150, Heat, H2O2"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig=1
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S66"
     upshifts        176525
                     /Source="Nicolas_upshifts"
                     /id="U111"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.95104895104895"
                     /psig=1
                     /xcortree=2510
                     /SigmaFactorBS="tgagccatttttttcttcagcaatcaTCTTGcgtaattgata
                     aaaaTTTATTATGATACTCTTTGTatgacaactccttgcctcaatacaatatactcaa
                     c"
                     /listShort="S66, ybaR"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             176682..178118
                     /gene="ybaR"
                     /locus_tag="BSU_01580"
                     /old_locus_tag="BSU01580"
                     /function="16.1: Circulate"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 15849754, 16850406;
                     Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="putative permease"
                     /protein_id="NP_388039.1"
                     /db_xref="EnsemblGenomes-Gn:BSU01580"
                     /db_xref="EnsemblGenomes-Tr:CAB11934"
                     /db_xref="GOA:P55189"
                     /db_xref="InterPro:IPR001902"
                     /db_xref="InterPro:IPR002645"
                     /db_xref="InterPro:IPR011547"
                     /db_xref="InterPro:IPR018045"
                     /db_xref="InterPro:IPR036513"
                     /db_xref="SubtiList:BG11562"
                     /db_xref="UniProtKB/Swiss-Prot:P55189"
                     /translation="MNNSFTLKQQWFGNIRKDILAGILVALALIPEAIGFSIIAGVDP
                     MVGLYASFCIAIIISIFGGRPGMISAATGSMAVVMVSLVADHGLQYLFAATILTGIIQ
                     VILGISKIARLMKFIPRSVMIGFVNALAILIFSAQLPQFEGASWSMYAMLAGSLVIIY
                     VLPRFTTAVPSPLVAIIVMTIIAVTFHVDVRTVGDMGNISSSLPHFLIPDVPFTFETL
                     QIIFPYSIALAFVGLLESLLTAQIIDEMTDTDSDKNKESRGQGIANIVTGFFGGMAGC
                     AMIGQSVINTKAGGRGRLSAFVAGAFLMFLIAVLSHVVVKIPMAALVAVMVMVSVGTF
                     DWSSLKGLKKAPLTDSIVMVVTVVTVVVTDDLSKGVFVGVLLSAVFFVAKISKLKIVS
                     HAEDQKLRTYQVKGQIFFASVTDLTNAFIYQEDIERVVIDLTEAHVWDDSGAAALDKI
                     VAKFKEQGIEAELKGLNKASKSLMKQMA*"
                     /label="ybaR CDS"
     gene            176682..178118
                     /gene="ybaR"
                     /locus_tag="BSU_01580"
                     /old_locus_tag="BSU01580"
                     /label="ybaR gene"
     downshifts      178107
                     /Source="Nicolas_upshifts"
                     /id="D56"
                     /incds=0
                     /nref=144
                     /ntot=228
                     /MaxReadThrough="2.81758"
                     /MaxDrop="4.71162"
                     /score="18.4600501"
                     /energy="-12"
                     /TU="NA"
                     /idTUdmin="U111"
                     /TUdmin="-2"
                     /isTUend="TRUE"
                     /label="downshifts"
     promotor_-35    178161..178166
                     /Source="Nicolas_upshift_promotors"
                     /id="U112"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.653346653346653"
                     /psig="0.707292707292707"
                     /xcortree=1448
                     /SigmaFactorBS="aatgagatctgggcttttttatatAACATAcacttaagcagc
                     ATTGATATAATAGAGAGAAGagaaattttaaataggggacttgcatatgatgcttcag
                     a"
                     /listShort="ybaS"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    178179..178198
                     /Source="Nicolas_upshift_promotors"
                     /id="U112"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.653346653346653"
                     /psig="0.707292707292707"
                     /xcortree=1448
                     /SigmaFactorBS="aatgagatctgggcttttttatatAACATAcacttaagcagc
                     ATTGATATAATAGAGAGAAGagaaattttaaataggggacttgcatatgatgcttcag
                     a"
                     /listShort="ybaS"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        178197
                     /Source="Nicolas_upshifts"
                     /id="U112"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.653346653346653"
                     /psig="0.707292707292707"
                     /xcortree=1448
                     /SigmaFactorBS="aatgagatctgggcttttttatatAACATAcacttaagcagc
                     ATTGATATAATAGAGAGAAGagaaattttaaataggggacttgcatatgatgcttcag
                     a"
                     /listShort="ybaS"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             178264..179184
                     /gene="ybaS"
                     /locus_tag="BSU_01590"
                     /old_locus_tag="BSU01590"
                     /function="7: Transport and binding proteins"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 15849754, 16850406;
                     Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="putative sodium dependent transporter"
                     /protein_id="NP_388040.2"
                     /db_xref="EnsemblGenomes-Gn:BSU01590"
                     /db_xref="EnsemblGenomes-Tr:CAB11935"
                     /db_xref="GOA:P55190"
                     /db_xref="InterPro:IPR002657"
                     /db_xref="InterPro:IPR004710"
                     /db_xref="SubtiList:BG11563"
                     /db_xref="UniProtKB/Swiss-Prot:P55190"
                     /translation="MPLLTPTSVVLGVLLSQFLNGYEWAVPWIFAFITFAGSLSANFQ
                     SLRHALSHPLPMILALFVLHIFMPLFAWGSGHLIFKGDPLTITGLTLAVVIPTGITSL
                     IWAAMYKGNVGLTLSIILVDTVLSPLIVPLSLSLLAGAQVHMDVWGMMKGLIVMVVIP
                     SFLGMLFNQMSSPERTAFVSSALSPFSKLCLMAVIAINSSAIAPYFKSIDLRFAGIAV
                     TVFFIALTGYAAAWLIGKMMKRRQEEIVSLIFTGGMRNISAGAVLAVTFFPSQVAVPV
                     VIGMLFQQILAALFGYMLNRFELKPMLQKA*"
                     /label="ybaS CDS"
     gene            178264..179184
                     /gene="ybaS"
                     /locus_tag="BSU_01590"
                     /old_locus_tag="BSU01590"
                     /label="ybaS gene"
     downshifts      179165
                     /Source="Nicolas_upshifts"
                     /id="D57"
                     /incds=0
                     /nref=33
                     /ntot=224
                     /MaxReadThrough="1.3063"
                     /MaxDrop="3.58628"
                     /score="13.3102824"
                     /energy="-10.5"
                     /TU="NA"
                     /idTUdmin="U112"
                     /TUdmin=0
                     /isTUend="TRUE"
                     /label="downshifts"
     CDS             complement(179194..179946)
                     /gene="eesA"
                     /locus_tag="BSU_01600"
                     /old_locus_tag="BSU01600"
                     /function="16.1: Circulate"
                     /experiment="publication(s) with functional evidences,
                     PMID:12354229, 2974033, 17725565, 22210890, 28283524"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 12354229, 2974033,
                     17725565, 22210890, 28283524; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="iron-chelator (enterobactin family) esterase"
                     /protein_id="NP_388041.2"
                     /db_xref="EnsemblGenomes-Gn:BSU01600"
                     /db_xref="EnsemblGenomes-Tr:CAB11936"
                     /db_xref="GOA:P55192"
                     /db_xref="InterPro:IPR000801"
                     /db_xref="InterPro:IPR029058"
                     /db_xref="SubtiList:BG11565"
                     /db_xref="UniProtKB/Swiss-Prot:P55192"
                     /translation="MKGSLSEHKAGNRRFTLYLPPSYSTDSGGFPAVYVQDGSSLFQN
                     QIELLESAFQQQRLPELVLIGIEPENRLDEYTPWPAASLSDRFTDFGGMGYHYLSDIT
                     NQFIPLIEENWNVTREPQSRGMIGASLGGLISMFAILKYPSMFGKIGSISGSYWYENA
                     AETIHISSLKPGTARVFMSIGSEEGREKQSIQRHMLKKTKQVHQSLKEKGFTEDQLCL
                     SIEKGAVHHHKYFCKQFINALEWLYGKNRSTL*"
                     /label="eesA CDS"
     gene            complement(179194..179946)
                     /gene="eesA"
                     /locus_tag="BSU_01600"
                     /old_locus_tag="BSU01600"
                     /label="eesA gene"
     downshifts      complement(179218)
                     /Source="Nicolas_upshifts"
                     /id="D58"
                     /incds=0
                     /nref=15
                     /ntot=115
                     /MaxReadThrough="0.3819"
                     /MaxDrop="4.57603"
                     /score="25.9728338"
                     /energy="-10.5"
                     /TU="NA"
                     /idTUdmin="U114"
                     /TUdmin=1
                     /isTUend="TRUE"
                     /label="downshifts"
     CDS             complement(179943..180953)
                     /gene="feuC"
                     /locus_tag="BSU_01610"
                     /old_locus_tag="BSU01610"
                     /function="16.1: Circulate"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 1c: Function from experimental evidences
                     in the studied genus; PubMedId: 2651410, 15849754,
                     16850406, 27375568; Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="iron-uptake protein"
                     /protein_id="NP_388042.2"
                     /db_xref="EnsemblGenomes-Gn:BSU01610"
                     /db_xref="EnsemblGenomes-Tr:CAB11937"
                     /db_xref="GOA:P40411"
                     /db_xref="InterPro:IPR000522"
                     /db_xref="InterPro:IPR035568"
                     /db_xref="SubtiList:BG10837"
                     /db_xref="UniProtKB/Swiss-Prot:P40411"
                     /translation="MAKKYALFIALILVVSYFSLTSGSFSVRPAELLSTLFQIDPNPQ
                     YEILLFDLRLPRVVMAAIIGLGLGIAGAVIQAITRNGLADPGILGINAGAGAGIVAFM
                     LLFQGQKEVTSIAAAMGMPLFGLIGGLIAAILIYIFAWHRGNLDSGRIILVGIAINSG
                     FSALSLFLSLKMDPQDYQMAMVWKNGSIWSANWTYITAVLPWMLLFIPILIGKSRLLD
                     TIRFDEDTVRSLGISSNKEKTILLVACVAIISACVSVAGSMAFVGLIAPHISRRLAGV
                     EHRYILPLSGLIGMLLVISADFAGKLFFQPAEVPAGIILAILGVPYFLYLLFKQKKGE
                     NA*"
                     /label="feuC CDS"
     gene            complement(179943..180953)
                     /gene="feuC"
                     /locus_tag="BSU_01610"
                     /old_locus_tag="BSU01610"
                     /label="feuC gene"
     CDS             complement(180946..181950)
                     /gene="feuB"
                     /locus_tag="BSU_01620"
                     /old_locus_tag="BSU01620"
                     /function="16.1: Circulate"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 2a: Function from experimental evidences
                     in other organisms; PubMedId: 2651410, 15849754, 16850406,
                     17725565; Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="ferri-bacillibactin permease"
                     /protein_id="NP_388043.1"
                     /db_xref="EnsemblGenomes-Gn:BSU01620"
                     /db_xref="EnsemblGenomes-Tr:CAB11938"
                     /db_xref="GOA:P40410"
                     /db_xref="InterPro:IPR000522"
                     /db_xref="InterPro:IPR035568"
                     /db_xref="SubtiList:BG10836"
                     /db_xref="UniProtKB/Swiss-Prot:P40410"
                     /translation="MYSKQWTRIILITSPFAIALSLLLSILYGAKHLSTDIVFTSLIH
                     FDPGNTDHQIIWHSRIPRAAGALLIGAALAVSGALMQGITRNYLASPSIMGVSDGSAF
                     IITLCMVLLPQSSSIEMMIYSFIGSALGAVLVFGLAAMMPNGFTPVQLAIIGTVTSML
                     LSSLSAAMSIYFQISQDLSFWYSARLHQMSPDFLKLAAPFFLIGIIMAISLSKKVTAV
                     SLGDDISKSLGQKKKTIKIMAMLSVIILTGSAVALAGKIAFVGLVVPHITRFLVGSDY
                     SRLIPCSCILGGIFLTLCDLASRFINYPFETPIEVVTSIIGVPFFLYLIKRKGGEQNG
                     *"
                     /label="feuB CDS"
     gene            complement(180946..181950)
                     /gene="feuB"
                     /locus_tag="BSU_01620"
                     /old_locus_tag="BSU01620"
                     /label="feuB gene"
     CDS             complement(181969..182922)
                     /gene="feuA"
                     /locus_tag="BSU_01630"
                     /old_locus_tag="BSU01630"
                     /function="16.1: Circulate"
                     /experiment="publication(s) with functional evidences,
                     PMID:8388528, 16889643, 17725565, 21802011, 22303020,
                     25355936"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 8388528, 16889643,
                     17725565, 21802011, 22303020, 25355936; Product type lp :
                     lipoprotein"
                     /codon_start=1
                     /transl_table=11
                     /product="ferri-bacillibactin-binding lipoprotein"
                     /protein_id="NP_388044.1"
                     /db_xref="EnsemblGenomes-Gn:BSU01630"
                     /db_xref="EnsemblGenomes-Tr:CAB11939"
                     /db_xref="GOA:P40409"
                     /db_xref="InterPro:IPR002491"
                     /db_xref="PDB:2PHZ"
                     /db_xref="PDB:2WHY"
                     /db_xref="PDB:2WI8"
                     /db_xref="PDB:2XUZ"
                     /db_xref="PDB:2XV1"
                     /db_xref="SubtiList:BG10835"
                     /db_xref="UniProtKB/Swiss-Prot:P40409"
                     /translation="MKKISLTLLILLLALTAAACGSKNESTASKASGTASEKKKIEYL
                     DKTYEVTVPTDKIAITGSVESMEDAKLLDVHPQGAISFSGKFPDMFKDITDKAEPTGE
                     KMEPNIEKILEMKPDVILASTKFPEKTLQKISTAGTTIPVSHISSNWKENMMLLAQLT
                     GKEKKAKKIIADYEQDLKEIKTKINDKAKDSKALVIRIRQGNIYIYPEQVYFNSTLYG
                     DLGLKAPNEVKAAKAQELSSLEKLSEMNPDHIFVQFSDDENADKPDALKDLEKNPIWK
                     SLKAVKEDHVYVNSVDPLAQGGTAWSKVRFLKAAAEKLTQN*"
                     /label="feuA CDS"
     gene            complement(181969..182922)
                     /gene="feuA"
                     /locus_tag="BSU_01630"
                     /old_locus_tag="BSU01630"
                     /label="feuA gene"
     promotor_-35    182282..182288
                     /Source="Nicolas_upshift_promotors"
                     /id="U113"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp="0.999000999001"
                     /psig="0.999000999001"
                     /xcortree=157
                     /SigmaFactorBS="gccttaaggcctaaatcaccgtatagtgtgGAGTTGAaatac
                     acctgttcaGGGTAAATGTAAATGTTGCcttgtctgattctgatgacaagcgcttttg
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    182303..182321
                     /Source="Nicolas_upshift_promotors"
                     /id="U113"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp="0.999000999001"
                     /psig="0.999000999001"
                     /xcortree=157
                     /SigmaFactorBS="gccttaaggcctaaatcaccgtatagtgtgGAGTTGAaatac
                     acctgttcaGGGTAAATGTAAATGTTGCcttgtctgattctgatgacaagcgcttttg
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        182312
                     /Source="Nicolas_upshifts"
                     /id="U113"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp="0.999000999001"
                     /psig="0.999000999001"
                     /xcortree=157
                     /SigmaFactorBS="gccttaaggcctaaatcaccgtatagtgtgGAGTTGAaatac
                     acctgttcaGGGTAAATGTAAATGTTGCcttgtctgattctgatgacaagcgcttttg
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     misc_feature    complement(182953..182972)
                     /Source="Nicolas_upshift_promotors"
                     /id="U114"
                     /multdbtbs="SigA"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.52947052947053"
                     /psig="0.984015984015984"
                     /xcortree=2097
                     /SigmaFactorBS="gtccatgataaatcaggaatttgtccatggtgttatatctgt
                     tcattcTCTATAATTCCAATTGATAAtagttatcaattgaacaggaggctctatagat
                     g"
                     /listShort="feuA, feuB, feuC, ybbA"
                     /GFF_Attribute="listLong"
                     /label="promotor_single_box"
                     /note="Geneious type: promotor_single_box"
     upshifts        complement(182960)
                     /Source="Nicolas_upshifts"
                     /id="U114"
                     /multdbtbs="SigA"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.52947052947053"
                     /psig="0.984015984015984"
                     /xcortree=2097
                     /SigmaFactorBS="gtccatgataaatcaggaatttgtccatggtgttatatctgt
                     tcattcTCTATAATTCCAATTGATAAtagttatcaattgaacaggaggctctatagat
                     g"
                     /listShort="feuA, feuB, feuC, ybbA"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             complement(183013..184602)
                     /gene="btr"
                     /locus_tag="BSU_01640"
                     /old_locus_tag="BSU01640"
                     /function="16.3: Control"
                     /experiment="publication(s) with functional evidences,
                     PMID:16889643, 17725565, 17962296, 22210890"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 16889643, 17725565,
                     17962296, 22210890; Product type r: regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional activator (AraC/XylS family) of
                     synthesis and uptake of the siderophore bacillibactin"
                     /protein_id="NP_388045.1"
                     /db_xref="EnsemblGenomes-Gn:BSU01640"
                     /db_xref="EnsemblGenomes-Tr:CAB11940"
                     /db_xref="GOA:P40408"
                     /db_xref="InterPro:IPR002491"
                     /db_xref="InterPro:IPR009057"
                     /db_xref="InterPro:IPR018060"
                     /db_xref="InterPro:IPR018062"
                     /db_xref="InterPro:IPR020449"
                     /db_xref="SubtiList:BG10834"
                     /db_xref="UniProtKB/Swiss-Prot:P40408"
                     /translation="MQNAVIYQPVQIEYLKKTSDLFSEQQLADSFVLIFHLKGNGYIS
                     IGTNTNPLQKKTLYVCPPNETFGFTPAADGHIDACIIRLLSYIKETGQDIFTPCTESE
                     LAKLKLMNVSHIENLAVRLQELAALWNESSQLSQLKCVIEVQSLIYDLFTASLSDQTD
                     THSAIEKTKHYIETHADTKITLAQLSQMAGISAKHYSESFKKWTGQSVTEFITKTRIT
                     KAKRLMAKSNCKLKEIAHQTGYQDEFYFSRIFKKYTGCSPTSYMKKRRKKIAAYGRGT
                     MGHLIPLHHIPFAAALHPKWTSYYYQHYSTDIPVQLSAYRFNEKWEENLYTLSQAEPD
                     VIVSMDSISPEEQDRLNRIAEVMYLPSEESWRTHFLQTASFLKEESEAEKWLADYDQQ
                     TTAAKKTLQHVQGLRFLFLRLHKQNFYLAHNRSVREVFFGDLGFSSATTADTPSEQAI
                     SLENIANYQADCMMLFLFKEPETIAYYQQLQQTEAWQNLSAVRDNRVYLLSLDPWNEY
                     SACGHERIVQQTVSLLSGDCP*"
                     /label="btr CDS"
     gene            complement(183013..184602)
                     /gene="btr"
                     /locus_tag="BSU_01640"
                     /old_locus_tag="BSU01640"
                     /label="btr gene"
     promotor_-10    complement(184643..184662)
                     /Source="Nicolas_upshift_promotors"
                     /id="U115"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.506493506493506"
                     /psig=1
                     /xcortree=2112
                     /SigmaFactorBS="tttttttcatgctaaaaacccacccgctttaTATAGGAAaac
                     tttcatttattTGGTACAATTTTTATTGAAAatgattatcaattgaaagcttctgaaa
                     a"
                     /listShort="ybbB, feuA, feuB, feuC, ybbA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(184655)
                     /Source="Nicolas_upshifts"
                     /id="U115"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.506493506493506"
                     /psig=1
                     /xcortree=2112
                     /SigmaFactorBS="tttttttcatgctaaaaacccacccgctttaTATAGGAAaac
                     tttcatttattTGGTACAATTTTTATTGAAAatgattatcaattgaaagcttctgaaa
                     a"
                     /listShort="ybbB, feuA, feuB, feuC, ybbA"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(184677..184684)
                     /Source="Nicolas_upshift_promotors"
                     /id="U115"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.506493506493506"
                     /psig=1
                     /xcortree=2112
                     /SigmaFactorBS="tttttttcatgctaaaaacccacccgctttaTATAGGAAaac
                     tttcatttattTGGTACAATTTTTATTGAAAatgattatcaattgaaagcttctgaaa
                     a"
                     /listShort="ybbB, feuA, feuB, feuC, ybbA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     downshifts      complement(184764)
                     /Source="Nicolas_upshifts"
                     /id="D59"
                     /incds=0
                     /nref=19
                     /ntot=58
                     /MaxReadThrough="1.28464"
                     /MaxDrop="7.13916"
                     /score="9.64466628"
                     /energy="-10.1"
                     /TU="NA"
                     /idTUdmin="U116"
                     /TUdmin=0
                     /isTUend="TRUE"
                     /label="downshifts"
     CDS             complement(184793..186037)
                     /gene="ybbC"
                     /locus_tag="BSU_01650"
                     /old_locus_tag="BSU01650"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved protein of unknown function"
                     /protein_id="NP_388046.1"
                     /db_xref="EnsemblGenomes-Gn:BSU01650"
                     /db_xref="EnsemblGenomes-Tr:CAB11941"
                     /db_xref="InterPro:IPR008302"
                     /db_xref="SubtiList:BG10833"
                     /db_xref="UniProtKB/Swiss-Prot:P40407"
                     /translation="MRKTIFAFLTGLMMFGTITAASASPDSKNQTAKKPKVQTGIDTL
                     LPDYKKQLKGKRIGLITNPAGVNTSLKSSVDILYENPDIKLTALFGPEHGVRGDAQAG
                     DEVGSYIDEKTGVPVYSLYGKTKKPTPEMLKNVDILMFDIQDVGTRFYTYIYTMAYAM
                     EAAKENGIPFMVLDRPNPQGGNHIEGPILEPEYASFVGLYPIPLKHGMTIGELASLFN
                     KEFSIDADLTVVKMKHWKRKMDFDDTRLPFVLPSPNMPTVESTFVYPATGLIEGTNIS
                     EGRGTTKPFELIGAPFIKSTELEETLNSLHLPGVTFRAASFTPTFSKHQGTLCHGVQL
                     YVTDRDKFEAVKTGLSVIKTIHDLYPEDFEFLSTGSFDKLAGNGWIRTKIENGTSVEN
                     IINSYEKTLQQFSKTRKKYLIY*"
                     /label="ybbC CDS"
     gene            complement(184793..186037)
                     /gene="ybbC"
                     /locus_tag="BSU_01650"
                     /old_locus_tag="BSU01650"
                     /label="ybbC gene"
     downshifts      complement(184814)
                     /Source="Nicolas_upshifts"
                     /id="D60"
                     /incds=0
                     /nref=11
                     /ntot=122
                     /MaxReadThrough="7.66074"
                     /MaxDrop="4.10379"
                     /score="9.64466628"
                     /energy="-10.1"
                     /TU="U116"
                     /idTUdmin="U116"
                     /TUdmin="-50"
                     /isTUend="FALSE"
                     /label="downshifts"
     CDS             complement(186051..187979)
                     /gene="nagZ"
                     /locus_tag="BSU_01660"
                     /old_locus_tag="BSU01660"
                     /EC_number="3.2.1.52"
                     /function="16.11: Scavenge (Catabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:8063094, 20400549, 20826810, 23177201, 26963691"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 8063094, 20400549,
                     20826810, 23177201, 26963691; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylglucosaminidase lipoprotein"
                     /protein_id="NP_388047.1"
                     /db_xref="EnsemblGenomes-Gn:BSU01660"
                     /db_xref="EnsemblGenomes-Tr:CAB11942"
                     /db_xref="GOA:P40406"
                     /db_xref="InterPro:IPR001764"
                     /db_xref="InterPro:IPR002772"
                     /db_xref="InterPro:IPR017853"
                     /db_xref="InterPro:IPR019800"
                     /db_xref="InterPro:IPR036881"
                     /db_xref="InterPro:IPR036962"
                     /db_xref="PDB:3BMX"
                     /db_xref="PDB:3LK6"
                     /db_xref="PDB:3NVD"
                     /db_xref="PDB:4GYJ"
                     /db_xref="PDB:4GYK"
                     /db_xref="SubtiList:BG10832"
                     /db_xref="UniProtKB/Swiss-Prot:P40406"
                     /translation="MRPVFPLILSAVLFLSCFFGARQTEASASKRAIDANQIVNRMSL
                     DEKLGQMLMPDFRNWQKEGESSPQALTKMNDEVASLVKKYQFGGIILFAENVKTTKQT
                     VQLTDDYQKASPKIPLMLSIDQEGGIVTRLGEGTNFPGNMALGAARSRINAYQTGSII
                     GKELSALGINTDFSPVVDINNNPDNPVIGVRSFSSNRELTSRLGLYTMKGLQRQDIAS
                     ALKHFPGHGDTDVDSHYGLPLVSHGQERLREVELYPFQKAIDAGADMVMTAHVQFPAF
                     DDTTYKSKLDGSDILVPATLSKKVMTGLLRQEMGFNGVIVTDALNMKAIADHFGQEEA
                     VVMAVKAGVDIALMPASVTSLKEEQKFARVIQALKEAVKNGDIPEQQINNSVERIISL
                     KIKRGMYPARNSDSTKEKIAKAKKIVGSKQHLKAEKKLAEKAVTVLKNEQHTLPFKPK
                     KGSRILIVAPYEEQTASIEQTIHDLIKRKKIKPVSLSKMNFASQVFKTEHEKQVKEAD
                     YIITGSYVVKNDPVVNDGVIDDTISDSSKWATVFPRAVMKAALQHNKPFVLMSLRNPY
                     DAANFEEAKALIAVYGFKGYANGRYLQPNIPAGVMAIFGQAKPKGTLPVDIPSVTKPG
                     NTLYPLGYGLNIKTGRPL*"
                     /label="nagZ CDS"
     gene            complement(186051..187979)
                     /gene="nagZ"
                     /locus_tag="BSU_01660"
                     /old_locus_tag="BSU01660"
                     /label="nagZ gene"
     CDS             complement(188007..189332)
                     /gene="amiE"
                     /locus_tag="BSU_01670"
                     /old_locus_tag="BSU01670"
                     /function="16.13: Shape"
                     /experiment="publication(s) with functional evidences,
                     PMID:16452451, 20400549"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 16452451, 20400549;
                     Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="amidase hydrolyzing N-acetylmuramyl-L-Ala bond
                     of MurNAc peptides"
                     /protein_id="NP_388048.2"
                     /db_xref="EnsemblGenomes-Gn:BSU01670"
                     /db_xref="EnsemblGenomes-Tr:CAB11943"
                     /db_xref="InterPro:IPR001466"
                     /db_xref="InterPro:IPR012338"
                     /db_xref="InterPro:IPR022849"
                     /db_xref="SubtiList:BG11566"
                     /db_xref="UniProtKB/Swiss-Prot:O05213"
                     /translation="MKTKTLFIFSAILTLSIFAPNETFAQTAGNLIEPKIINAETAQF
                     STKKLRKVDQMIERDIAAGFPGAVLVVVKDGRIIKKAAYGYSKKYEGSELLRRPAKMK
                     TRTMFDLASNTKMYATNFALQRLVSQGKLDVYEKVSAYLPGFKDQPGDLIKGKDKIRV
                     IDVLQHQSGLPSSFYFYTPEKAGKYYSQERDKTIEYLTKIPLDYQTGTKHVYSDIGYM
                     LLGCIVEKLTGKPLDVYTEQELYKPLRLKHTLYNPLQKGFKPKQFAATERMGNTRDGV
                     IQFPNIRTNTLQGEVHDEKAFYSMDGVSGHAGLFSNADDMAILLQVMLNKGSYRNISL
                     FDQKTADLFTAPSATDPTFALGWRRNGSKSMEWMFGPHASENAYGHTGWTGTVTIIDP
                     AYNLGIALLTNKKHTPVIDPEENPNVFEGDQFPTGSYGSVITAIYEAME*"
                     /label="amiE CDS"
     gene            complement(188007..189332)
                     /gene="amiE"
                     /locus_tag="BSU_01670"
                     /old_locus_tag="BSU01670"
                     /label="amiE gene"
     CDS             complement(189389..190756)
                     /gene="murP"
                     /locus_tag="BSU_01680"
                     /old_locus_tag="BSU01680"
                     /EC_number="2.7.1.192"
                     /function="16.1: Circulate"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 2a: Function from experimental evidences
                     in other organisms; PubMedId: 15060041, 15849754,
                     16850406, 10627040, 20400549, 22960854; Product type t :
                     transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylmuramic acid PTS permease-MurP subunit"
                     /protein_id="NP_388049.3"
                     /db_xref="EnsemblGenomes-Gn:BSU01680"
                     /db_xref="EnsemblGenomes-Tr:CAB11944"
                     /db_xref="GOA:Q797S1"
                     /db_xref="InterPro:IPR001996"
                     /db_xref="InterPro:IPR003352"
                     /db_xref="InterPro:IPR013013"
                     /db_xref="InterPro:IPR018113"
                     /db_xref="InterPro:IPR036878"
                     /db_xref="SubtiList:BG11567"
                     /db_xref="UniProtKB/Swiss-Prot:Q797S1"
                     /translation="MSKENNYHHLAQKILELCGGKSNISSYTHCMTRLRITPYDESKA
                     DAQALRKLDGVLGVVEAETLQIILGTGVVNHVTAAFSKLVSAEEGADVKEAAAKKKAD
                     INRKNATPFKLFLRKIASIFIPLIPALVASGLITGITKAIIQAGWLSADSQIAIILTV
                     IGSGLFTYLGILVGINASKEFGGTPALGALAGILIINPEIAKISLFGEELLPGRGGLI
                     GVLFAAIFIAYTEQFIRRFIPQSLDIIVTPTVSLLITGIVTYVVFMPLGGFISDAITS
                     GLLSILDIGGIAAGFILGATFLPLVVTGLHQGLTPVHMELINSIGNDPLLPILAMGGA
                     GQVGAAFAVFVKTKKTTLRKAIAGGLPSGLLGIGEPLIFGVTLPLGRPFLTACLGAGI
                     GGAFQAYFQVATIAIGVSGLPLSFLVLPSQIILYIVGLFISYAAGFLLTYAFGYKDEM
                     ASQFD*"
                     /label="murP CDS"
     gene            complement(189389..190756)
                     /gene="murP"
                     /locus_tag="BSU_01680"
                     /old_locus_tag="BSU01680"
                     /label="murP gene"
     CDS             complement(190782..191633)
                     /gene="murR"
                     /locus_tag="BSU_01690"
                     /old_locus_tag="BSU01690"
                     /function="16.3: Control"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 2a: Function from experimental evidences
                     in other organisms; PubMedId: 20400549; Product type r :
                     regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator MurR-N-acetylmuramic
                     acid"
                     /protein_id="NP_388050.1"
                     /db_xref="EnsemblGenomes-Gn:BSU01690"
                     /db_xref="EnsemblGenomes-Tr:CAB11945"
                     /db_xref="GOA:Q45581"
                     /db_xref="InterPro:IPR000281"
                     /db_xref="InterPro:IPR001347"
                     /db_xref="InterPro:IPR009057"
                     /db_xref="InterPro:IPR035472"
                     /db_xref="InterPro:IPR036388"
                     /db_xref="PDB:2O3F"
                     /db_xref="SubtiList:BG11569"
                     /db_xref="UniProtKB/Swiss-Prot:Q45581"
                     /translation="MATGGLAIIQSMKHKLPPSERKLADYILAHPHKAIESTVNEISA
                     LANSSDAAVIRLCKSLGLKGFQDLKMRVAGDLAKPTFQGYRDIVPHEPLPSISEKTAG
                     NAIQAIQDTSDLMDYKELERAVSLLLKAHTVHFIGLGASGIVAKDAQQKWLRIHKQAT
                     AFTDTHLVASLIANADKDDIVFAISFSGETQEIVELFAMAKEKGITTISLTQFSQTSV
                     SALADVPLYTAHSNEALIRSAATSSRLAQLFIIDVLFLGMAAEQYETTTGYIDKTRAA
                     IQSMRIK*"
                     /label="murR CDS"
     gene            complement(190782..191633)
                     /gene="murR"
                     /locus_tag="BSU_01690"
                     /old_locus_tag="BSU01690"
                     /label="murR gene"
     CDS             complement(191650..192564)
                     /gene="murQ"
                     /locus_tag="BSU_01700"
                     /old_locus_tag="BSU01700"
                     /EC_number="4.2.1.126"
                     /function="16.13: Shape"
                     /function="16.11: Scavenge (Catabolism)"
                     /function="16.6: Maintain"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 2a: Function from experimental evidences
                     in other organisms; PubMedId: 15983044, 20400549,
                     16452451; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="D-lactyl ether N-acetylmuramic-6-phosphate acid
                     etherase"
                     /protein_id="NP_388051.1"
                     /db_xref="EnsemblGenomes-Gn:BSU01700"
                     /db_xref="EnsemblGenomes-Tr:CAB11946"
                     /db_xref="GOA:Q45582"
                     /db_xref="InterPro:IPR001347"
                     /db_xref="InterPro:IPR005486"
                     /db_xref="InterPro:IPR005488"
                     /db_xref="SubtiList:BG11570"
                     /db_xref="UniProtKB/Swiss-Prot:Q45582"
                     /translation="MSEPLNLHRLTTESRNSQTVEIHKANTLGILKMINNEDMKVAAA
                     VQEVLPDIKTAVDCAYESFQNGGRLIYTGAGTSGRLGVMDAVECPPTYSVSPDQVIGI
                     MAGGPEAFLQAAEGIEDSEEAGAEDLRNIQLTSNDTVIAIAASGRTPYAAGALRYARK
                     VGAHTIALTCNENSAISKDADHSIEVVVGPEAITGSTRMKAATAHKMILNMISTAVMV
                     KIGKVYENLMVDVNVSNKKLKERAISIIQSLTNASYDTARYTLEQADHHVKTAIVMLK
                     TSTDQKQAQTLLDEANGFIDKAIEHYHP*"
                     /label="murQ CDS"
     gene            complement(191650..192564)
                     /gene="murQ"
                     /locus_tag="BSU_01700"
                     /old_locus_tag="BSU01700"
                     /label="murQ gene"
     promotor_-10    complement(192595..192613)
                     /Source="Nicolas_upshift_promotors"
                     /id="U116"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.25974025974026"
                     /psig="0.681318681318681"
                     /xcortree=765
                     /SigmaFactorBS="agtgaaataaaatttcaaaaatttaaaaacatAGTTGAAAta
                     tcataacagaaatGAATATACTGAATATTGAGatatatcattttaaaacagggggcat
                     c"
                     /listShort="murQ, ybbH, ybbF, ybbE, ybbD, ybbC"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(192608)
                     /Source="Nicolas_upshifts"
                     /id="U116"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.25974025974026"
                     /psig="0.681318681318681"
                     /xcortree=765
                     /SigmaFactorBS="agtgaaataaaatttcaaaaatttaaaaacatAGTTGAAAta
                     tcataacagaaatGAATATACTGAATATTGAGatatatcattttaaaacagggggcat
                     c"
                     /listShort="murQ, ybbH, ybbF, ybbE, ybbD, ybbC"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(192629..192636)
                     /Source="Nicolas_upshift_promotors"
                     /id="U116"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.25974025974026"
                     /psig="0.681318681318681"
                     /xcortree=765
                     /SigmaFactorBS="agtgaaataaaatttcaaaaatttaaaaacatAGTTGAAAta
                     tcataacagaaatGAATATACTGAATATTGAGatatatcattttaaaacagggggcat
                     c"
                     /listShort="murQ, ybbH, ybbF, ybbE, ybbD, ybbC"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             complement(192674..193156)
                     /gene="ybbJ"
                     /locus_tag="BSU_01710"
                     /old_locus_tag="BSU01710"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative acyltransferase"
                     /protein_id="NP_388052.2"
                     /db_xref="EnsemblGenomes-Gn:BSU01710"
                     /db_xref="EnsemblGenomes-Tr:CAB11947"
                     /db_xref="GOA:Q45583"
                     /db_xref="InterPro:IPR000182"
                     /db_xref="InterPro:IPR016181"
                     /db_xref="SubtiList:BG11571"
                     /db_xref="UniProtKB/Swiss-Prot:Q45583"
                     /translation="MTQDISLSFYKPEHLPELQSFTLTNDDKRFTSLPKEVLSQALGI
                     QDRYPVVILKDDLPVGFFILHASKETLASYSNNPFALLLSSLSLTAVHHGKGYAKKAM
                     LLLPAFVSGYFPWCDEIILAVNHLNIRAKHLYMKSGFLDKGRRRIGPLGEQLILHHFL
                     *"
                     /label="ybbJ CDS"
     gene            complement(192674..193156)
                     /gene="ybbJ"
                     /locus_tag="BSU_01710"
                     /old_locus_tag="BSU01710"
                     /label="ybbJ gene"
     CDS             complement(193169..193624)
                     /gene="ybbK"
                     /locus_tag="BSU_01720"
                     /old_locus_tag="BSU01720"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved protein of unknown function"
                     /protein_id="NP_388053.2"
                     /db_xref="EnsemblGenomes-Gn:BSU01720"
                     /db_xref="EnsemblGenomes-Tr:CAB11948"
                     /db_xref="InterPro:IPR007553"
                     /db_xref="SubtiList:BG11572"
                     /db_xref="UniProtKB/Swiss-Prot:Q45584"
                     /translation="MILVSSCLGGIECRYNGSHAASEKIRKLVDEKKAVMACPELLGG
                     FSTPREPAEIIGGTGEDVLNGTAKIVTASGEDVTELYMEGAAKTLAYAKEINASAVIL
                     KENSPSCGSGFIYNGTFSGKKITGSGVTAALLKQAGYRVISENELNDIL*"
                     /label="ybbK CDS"
     gene            complement(193169..193624)
                     /gene="ybbK"
                     /locus_tag="BSU_01720"
                     /old_locus_tag="BSU01720"
                     /label="ybbK gene"
     promotor_-10    complement(193650..193669)
                     /Source="Nicolas_upshift_promotors"
                     /id="U117"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.7002997002997"
                     /psig="0.992007992007992"
                     /xcortree=3038
                     /SigmaFactorBS="ttttttattttcaaactttttaactccttttttaactgaaaa
                     agccTCccaactaaagccatTTATTTTATGATAGAGACAAgcaaagcaagagaggaga
                     a"
                     /listShort="ybbK, ybbJ, murQ, ybbH, ybbF"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(193671)
                     /Source="Nicolas_upshifts"
                     /id="U117"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.7002997002997"
                     /psig="0.992007992007992"
                     /xcortree=3038
                     /SigmaFactorBS="ttttttattttcaaactttttaactccttttttaactgaaaa
                     agccTCccaactaaagccatTTATTTTATGATAGAGACAAgcaaagcaagagaggaga
                     a"
                     /listShort="ybbK, ybbJ, murQ, ybbH, ybbF"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(193684..193685)
                     /Source="Nicolas_upshift_promotors"
                     /id="U117"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.7002997002997"
                     /psig="0.992007992007992"
                     /xcortree=3038
                     /SigmaFactorBS="ttttttattttcaaactttttaactccttttttaactgaaaa
                     agccTCccaactaaagccatTTATTTTATGATAGAGACAAgcaaagcaagagaggaga
                     a"
                     /listShort="ybbK, ybbJ, murQ, ybbH, ybbF"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-35    193744..193751
                     /Source="Nicolas_upshift_promotors"
                     /id="U118"
                     /multdbtbs="-"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp="0.853146853146853"
                     /psig=1
                     /xcortree=2416
                     /SigmaFactorBS="tttgaaaataaaaaatttaattttcctCTTTACAAacagggg
                     gtgacctGTATATAATAACTTTTGTCAgctcgacgagaacacaacggcccgttggtca
                     a"
                     /listShort="trnSL-Glu2, trnSL-Val1, trnSL-Thr1,
                     trnSL-Tyr1, trnSL-Gln2, S67"
                     /listLong="sigW, rsiW, S68, ybbP, ybbR, glmM, NA, S69,
                     glmS"
                     /label="promotor_-35"
     promotor_-10    193766..193785
                     /Source="Nicolas_upshift_promotors"
                     /id="U118"
                     /multdbtbs="-"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp="0.853146853146853"
                     /psig=1
                     /xcortree=2416
                     /SigmaFactorBS="tttgaaaataaaaaatttaattttcctCTTTACAAacagggg
                     gtgacctGTATATAATAACTTTTGTCAgctcgacgagaacacaacggcccgttggtca
                     a"
                     /listShort="trnSL-Glu2, trnSL-Val1, trnSL-Thr1,
                     trnSL-Tyr1, trnSL-Gln2, S67"
                     /listLong="sigW, rsiW, S68, ybbP, ybbR, glmM, NA, S69,
                     glmS"
                     /label="promotor_-10"
     upshifts        193777
                     /Source="Nicolas_upshifts"
                     /id="U118"
                     /multdbtbs="-"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp="0.853146853146853"
                     /psig=1
                     /xcortree=2416
                     /SigmaFactorBS="tttgaaaataaaaaatttaattttcctCTTTACAAacagggg
                     gtgacctGTATATAATAACTTTTGTCAgctcgacgagaacacaacggcccgttggtca
                     a"
                     /listShort="trnSL-Glu2, trnSL-Val1, trnSL-Thr1,
                     trnSL-Tyr1, trnSL-Gln2, S67"
                     /listLong="sigW, rsiW, S68, ybbP, ybbR, glmM, NA, S69,
                     glmS"
                     /label="upshifts"
     tRNA            193804..193878
                     /gene="trnSL-Glu2"
                     /locus_tag="BSU_tRNA_75"
                     /product="tRNA-Glu"
                     /inference="profile:tRNAscan:1.23"
                     /note="transfer RNA-Glu(UUC); Evidence 2a: Function from
                     experimental evidences in other organisms; Product type n:
                     RNA"
                     /function="16.2: Construct biomass (Anabolism)"
                     /label="trnSL-Glu2 tRNA"
     gene            193804..193878
                     /gene="trnSL-Glu2"
                     /locus_tag="BSU_tRNA_75"
                     /label="trnSL-Glu2 gene"
     tRNA            193882..193957
                     /gene="trnSL-Val1"
                     /locus_tag="BSU_tRNA_78"
                     /product="tRNA-Val"
                     /inference="profile:tRNAscan:1.23"
                     /note="transfer RNA-Val(UAC); Evidence 2a: Function from
                     experimental evidences in other organisms; Product type n:
                     RNA"
                     /function="16.2: Construct biomass (Anabolism)"
                     /label="trnSL-Val1 tRNA"
     gene            193882..193957
                     /gene="trnSL-Val1"
                     /locus_tag="BSU_tRNA_78"
                     /label="trnSL-Val1 gene"
     tRNA            193962..194034
                     /gene="trnSL-Thr1"
                     /locus_tag="BSU_tRNA_76"
                     /product="tRNA-Thr"
                     /inference="profile:tRNAscan:1.23"
                     /note="transfer RNA-Thr(UGU); Evidence 2a: Function from
                     experimental evidences in other organisms; Product type n:
                     RNA"
                     /function="16.2: Construct biomass (Anabolism)"
                     /label="trnSL-Thr1 tRNA"
     gene            193962..194034
                     /gene="trnSL-Thr1"
                     /locus_tag="BSU_tRNA_76"
                     /label="trnSL-Thr1 gene"
     tRNA            194057..194141
                     /gene="trnSL-Tyr1"
                     /locus_tag="BSU_tRNA_77"
                     /product="tRNA-Tyr"
                     /inference="profile:tRNAscan:1.23"
                     /note="transfer RNA-Tyr(GAU); Evidence 2a: Function from
                     experimental evidences in other organisms; Product type n:
                     RNA"
                     /function="16.2: Construct biomass (Anabolism)"
                     /label="trnSL-Tyr1 tRNA"
     gene            194057..194141
                     /gene="trnSL-Tyr1"
                     /locus_tag="BSU_tRNA_77"
                     /label="trnSL-Tyr1 gene"
     tRNA            194146..194220
                     /gene="trnSL-Gln2"
                     /locus_tag="BSU_tRNA_74"
                     /product="tRNA-Gln"
                     /inference="profile:tRNAscan:1.23"
                     /note="transfer RNA-Gln(UUG); Evidence 2a: Function from
                     experimental evidences in other organisms; Product type n:
                     RNA"
                     /function="16.2: Construct biomass (Anabolism)"
                     /label="trnSL-Gln2 tRNA"
     gene            194146..194220
                     /gene="trnSL-Gln2"
                     /locus_tag="BSU_tRNA_74"
                     /label="trnSL-Gln2 gene"
     downshifts      194223
                     /Source="Nicolas_upshifts"
                     /id="D61"
                     /incds=0
                     /nref=10
                     /ntot=91
                     /MaxReadThrough="4.25215"
                     /MaxDrop="3.84626"
                     /score="25.5087424"
                     /energy="-11.4"
                     /TU="U118"
                     /idTUdmin="U118"
                     /TUdmin="-176"
                     /isTUend="FALSE"
                     /label="downshifts"
     S_feature       194268..194385
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_194669_194786"
                     /HighExp="Paraq, BMM, H2O2, Heat, G180, G135, Oxctl, G150,
                     C30, Lbexp"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig=1
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S67"
     promotor_-35    194386..194395
                     /Source="Nicolas_upshift_promotors"
                     /id="U119"
                     /multdbtbs="SigW"
                     /comp="M9"
                     /sig="SigWXY"
                     /pcomp=1
                     /psig=1
                     /xcortree=1680
                     /SigmaFactorBS="ttcacgaattaccatctacaccctgccaaaaatttgataaac
                     ttattttataaaaaaatTGAAACCTTTtgaaacgaagcTCGTATACATACAGACcggt
                     g"
                     /listShort="sigW, rsiW"
                     /listLong="S68, ybbP, ybbR, glmM, NA, S69, glmS"
                     /label="promotor_-35"
     upshifts        194387
                     /Source="Nicolas_upshifts"
                     /id="U119"
                     /multdbtbs="SigW"
                     /comp="M9"
                     /sig="SigWXY"
                     /pcomp=1
                     /psig=1
                     /xcortree=1680
                     /SigmaFactorBS="ttcacgaattaccatctacaccctgccaaaaatttgataaac
                     ttattttataaaaaaatTGAAACCTTTtgaaacgaagcTCGTATACATACAGACcggt
                     g"
                     /listShort="sigW, rsiW"
                     /listLong="S68, ybbP, ybbR, glmM, NA, S69, glmS"
                     /label="upshifts"
     promotor_-10    194407..194422
                     /Source="Nicolas_upshift_promotors"
                     /id="U119"
                     /multdbtbs="SigW"
                     /comp="M9"
                     /sig="SigWXY"
                     /pcomp=1
                     /psig=1
                     /xcortree=1680
                     /SigmaFactorBS="ttcacgaattaccatctacaccctgccaaaaatttgataaac
                     ttattttataaaaaaatTGAAACCTTTtgaaacgaagcTCGTATACATACAGACcggt
                     g"
                     /listShort="sigW, rsiW"
                     /listLong="S68, ybbP, ybbR, glmM, NA, S69, glmS"
                     /label="promotor_-10"
     CDS             194448..195011
                     /gene="sigW"
                     /locus_tag="BSU_01730"
                     /old_locus_tag="BSU01730"
                     /function="16.3: Control"
                     /experiment="publication(s) with functional evidences,
                     PMID:11866510, 15130127, 16629676, 21542858, 28319136,
                     22720735"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 11866510, 15130127,
                     16629676, 21542858, 28319136, 22720735; Product type r :
                     regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase ECF(extracytoplasmic
                     function)-type sigma factor W"
                     /protein_id="NP_388054.1"
                     /db_xref="EnsemblGenomes-Gn:BSU01730"
                     /db_xref="EnsemblGenomes-Tr:CAB11949"
                     /db_xref="GOA:Q45585"
                     /db_xref="InterPro:IPR000838"
                     /db_xref="InterPro:IPR007627"
                     /db_xref="InterPro:IPR013249"
                     /db_xref="InterPro:IPR013324"
                     /db_xref="InterPro:IPR013325"
                     /db_xref="InterPro:IPR014284"
                     /db_xref="InterPro:IPR014294"
                     /db_xref="InterPro:IPR036388"
                     /db_xref="PDB:5WUQ"
                     /db_xref="PDB:5WUR"
                     /db_xref="SubtiList:BG11573"
                     /db_xref="UniProtKB/Swiss-Prot:Q45585"
                     /translation="MEMMIKKRIKQVKKGDQDAFADIVDIYKDKIYQLCYRMLGNVHE
                     AEDIAQEAFIRAYVNIDSFDINRKFSTWLYRIATNLTIDRIRKKKPDYYLDAEVAGTE
                     GLTMYSQIVADGVLPEDAVVSLELSNTIQQKILKLPDKYRTVIVLKYIDELSLIEIGE
                     ILNIPVGTVKTRIHRGREALRKQLRDL*"
                     /label="sigW CDS"
     gene            194448..195011
                     /gene="sigW"
                     /locus_tag="BSU_01730"
                     /old_locus_tag="BSU01730"
                     /label="sigW gene"
     CDS             195025..195651
                     /gene="rsiW"
                     /locus_tag="BSU_01740"
                     /old_locus_tag="BSU01740"
                     /function="16.3: Control"
                     /experiment="publication(s) with functional evidences,
                     PMID:15130127, 28319136, 22720735"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 15130127, 28319136,
                     22720735; Product type r: regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="anti-sigma(W) factor"
                     /protein_id="NP_388055.1"
                     /db_xref="EnsemblGenomes-Gn:BSU01740"
                     /db_xref="EnsemblGenomes-Tr:CAB11950"
                     /db_xref="GOA:Q45588"
                     /db_xref="InterPro:IPR027383"
                     /db_xref="PDB:5WUQ"
                     /db_xref="PDB:5WUR"
                     /db_xref="SubtiList:BG11574"
                     /db_xref="UniProtKB/Swiss-Prot:Q45588"
                     /translation="MSCPEQIVQLMHMHLDGDILPKDEHVLNEHLETCEKCRKHFYEM
                     EKSIALVRSTSHVEAPADFTANVMAKLPKEKKRASVKRWFRTHPVIAAAAVFIILMGG
                     GFFNSWHNDHNFSVSKQPNLVVHNHTVTVPEGETVKGDVTVKNGKLIIKGKIDGDVTV
                     VNGEKYMASAGQVTGQIEEINQLFDWTWYKMKSAGKSVLDAFNPNGEE*"
                     /label="rsiW CDS"
     gene            195025..195651
                     /gene="rsiW"
                     /locus_tag="BSU_01740"
                     /old_locus_tag="BSU01740"
                     /label="rsiW gene"
     downshifts      complement(195443)
                     /Source="Nicolas_upshifts"
                     /id="D62"
                     /incds=1
                     /nref=2
                     /ntot=181
                     /MaxReadThrough="1.52124"
                     /MaxDrop="3.24828"
                     /score="0.305471631"
                     /energy="-6.9"
                     /TU="NA"
                     /idTUdmin="U120"
                     /TUdmin=0
                     /isTUend="TRUE"
                     /label="downshifts"
     promotor_no_box complement(195601..195701)
                     /Source="Nicolas_upshift_promotors"
                     /id="U120"
                     /multdbtbs="-"
                     /comp="M13"
                     /sig="Sig-"
                     /pcomp="0.95904095904096"
                     /psig="0.002997002997003"
                     /xcortree=56
                     /SigmaFactorBS="tgtgccagccctctcagcccgcaaaaaaagagcaaagcggct
                     aacgcgctttactcttctccgttcggattgaatgcatcgagtacacttttccccgcag
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_no_box"
     downshifts      195631
                     /Source="Nicolas_upshifts"
                     /id="D63"
                     /incds=0
                     /nref=251
                     /ntot=269
                     /MaxReadThrough="4.26924"
                     /MaxDrop="8.34597"
                     /score="7.39786279"
                     /energy="-10.8"
                     /TU="U119"
                     /idTUdmin="U119"
                     /TUdmin="-88"
                     /isTUend="FALSE"
                     /label="downshifts"
     upshifts        complement(195641)
                     /Source="Nicolas_upshifts"
                     /id="U120"
                     /multdbtbs="-"
                     /comp="M13"
                     /sig="Sig-"
                     /pcomp="0.95904095904096"
                     /psig="0.002997002997003"
                     /xcortree=56
                     /SigmaFactorBS="tgtgccagccctctcagcccgcaaaaaaagagcaaagcggct
                     aacgcgctttactcttctccgttcggattgaatgcatcgagtacacttttccccgcag
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    195700..195707
                     /Source="Nicolas_upshift_promotors"
                     /id="U121"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.73026973026973"
                     /psig=1
                     /xcortree=1886
                     /SigmaFactorBS="tctttttttgcgggctgagagggctggcaCATTTCACttgct
                     aaatcgaaaTGTGGTATAATGGGCTCGCTatgtaaagtacatatgcgtaacacgtaaa
                     a"
                     /listShort="S68, ybbP, ybbR, glmM"
                     /listLong="NA, S69, glmS"
                     /label="promotor_-35"
     promotor_-10    195722..195741
                     /Source="Nicolas_upshift_promotors"
                     /id="U121"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.73026973026973"
                     /psig=1
                     /xcortree=1886
                     /SigmaFactorBS="tctttttttgcgggctgagagggctggcaCATTTCACttgct
                     aaatcgaaaTGTGGTATAATGGGCTCGCTatgtaaagtacatatgcgtaacacgtaaa
                     a"
                     /listShort="S68, ybbP, ybbR, glmM"
                     /listLong="NA, S69, glmS"
                     /label="promotor_-10"
     S_feature       195731..195811
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_196132_196212"
                     /HighExp="dia5, Diami, H2O2, dia15, G135, Cold, G180,
                     Paraq, G150, Oxctl"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig=1
                     /TUlongSig="SigWXY, SigA"
                     /TUlongPSig="1, 1"
                     /label="S68"
     upshifts        195731
                     /Source="Nicolas_upshifts"
                     /id="U121"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.73026973026973"
                     /psig=1
                     /xcortree=1886
                     /SigmaFactorBS="tctttttttgcgggctgagagggctggcaCATTTCACttgct
                     aaatcgaaaTGTGGTATAATGGGCTCGCTatgtaaagtacatatgcgtaacacgtaaa
                     a"
                     /listShort="S68, ybbP, ybbR, glmM"
                     /listLong="NA, S69, glmS"
                     /label="upshifts"
     CDS             195812..196633
                     /gene="cdaA"
                     /locus_tag="BSU_01750"
                     /old_locus_tag="BSU01750"
                     /EC_number="2.7.7.85"
                     /function="16.13: Shape"
                     /function="16.3: Control"
                     /function="16.6: Maintain"
                     /experiment="publication(s) with functional evidences,
                     PMID:19901023, 21566650, 23192352, 25605729, 25616256,
                     26240071, 28420751"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 19901023, 21566650,
                     23192352, 25605729, 25616256, 26240071, 28420751; Product
                     type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="diadenylate cyclase"
                     /protein_id="NP_388056.2"
                     /db_xref="EnsemblGenomes-Gn:BSU01750"
                     /db_xref="EnsemblGenomes-Tr:CAB11951"
                     /db_xref="GOA:Q45589"
                     /db_xref="InterPro:IPR003390"
                     /db_xref="InterPro:IPR014046"
                     /db_xref="InterPro:IPR034701"
                     /db_xref="InterPro:IPR036888"
                     /db_xref="SubtiList:BG11577"
                     /db_xref="UniProtKB/Swiss-Prot:Q45589"
                     /translation="MAFEDIPFLQYLGNAVDILLVWYVIYKLIMVIRGTKAVQLLKGI
                     VVIVLVRMASQYLGLSTLQWLMDQAITWGFLAIIIIFQPELRRALEQLGRGRFFSRSG
                     TPVEEAQQKTIEAITKAINYMAKRRIGALLTIERDTGMGDYIETGIPLNAKVSSELLI
                     NIFIPNTPLHDGAVIMKNNEIAAAACYLPLSESPFISKELGTRHRAAVGISEVTDSLT
                     IIVSEETGGVSVAKNGDLHRELTEEALKEMLEAEFKKNTRDTSSNRWYWRGKKNG*"
                     /label="cdaA CDS"
     gene            195812..196633
                     /gene="cdaA"
                     /locus_tag="BSU_01750"
                     /old_locus_tag="BSU01750"
                     /label="cdaA gene"
     CDS             196626..198077
                     /gene="cdaR"
                     /locus_tag="BSU_01760"
                     /old_locus_tag="BSU01760"
                     /experiment="publication(s) with functional evidences,
                     PMID:16236721, 17406245, 20094656, 21154411, 22720735,
                     23192352, 27074767"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 16236721, 17406245,
                     20094656, 21154411, 22720735, 23192352, 27074767; Product
                     type r: regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="regulator of diadenylate cyclase activity"
                     /protein_id="NP_388057.2"
                     /db_xref="EnsemblGenomes-Gn:BSU01760"
                     /db_xref="EnsemblGenomes-Tr:CAB11952"
                     /db_xref="GOA:O34659"
                     /db_xref="InterPro:IPR012505"
                     /db_xref="InterPro:IPR015943"
                     /db_xref="SubtiList:BG12703"
                     /db_xref="UniProtKB/Swiss-Prot:O34659"
                     /translation="MDKFLNNRWAVKIIALLFALLLYVAVNSNQAPTPKKPGESFFPT
                     STTDEATLTDIPVKAYYDDENYVVTGVPQTVNVTIKGSTSAVKKARQTKNFEIYADME
                     HLKTGTHKVELKAKNVSDGLTISINPSVTTVTIQERTTKSFPVEVEYYNKSKMKKGYS
                     PEQPIVSPKNVQITGSKNVIDNISLVKASVNLENADETIEKEAKVTVYDKDGNALPVD
                     VEPSVIKITVPVTSPSKKVPFKIERTGSLPDGVSIANIESSPSEVTVYGSQDVLDSLE
                     FIDGVSLDLSKINKDSDIEADIPLPDGVKKISPSKVTLHIEVDSEADQKFENVPIKTV
                     GLSSSQNIEFLDPESQAIDVTAKGSPTNINKLKKSDIELYVNVSDLEDGEHSVKLEVN
                     GPQNVTWSLGRKNAKIKLTSKKSNTSTNDNSSNTSGNQDTDKQTNDQKNNQQEDTKNT
                     DKNNNDQNQDGNKDQNQDQDEDESTANSQSSSE*"
                     /label="cdaR CDS"
     gene            196626..198077
                     /gene="cdaR"
                     /locus_tag="BSU_01760"
                     /old_locus_tag="BSU01760"
                     /label="cdaR gene"
     CDS             198096..199442
                     /gene="glmM"
                     /locus_tag="BSU_01770"
                     /old_locus_tag="BSU01770"
                     /EC_number="5.4.2.10"
                     /function="16.13: Shape"
                     /function="16.2: Construct biomass (Anabolism)"
                     /function="16.6: Maintain"
                     /experiment="publication(s) with functional evidences,
                     PMID:10671448, 10913078, 12089032, 21154411, 26240071,
                     27074767"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 10671448, 10913078,
                     12089032, 21154411, 26240071, 27074767; Product type e :
                     enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglucosamine mutase"
                     /protein_id="NP_388058.1"
                     /db_xref="EnsemblGenomes-Gn:BSU01770"
                     /db_xref="EnsemblGenomes-Tr:CAB11953"
                     /db_xref="GOA:O34824"
                     /db_xref="InterPro:IPR005841"
                     /db_xref="InterPro:IPR005843"
                     /db_xref="InterPro:IPR005844"
                     /db_xref="InterPro:IPR005845"
                     /db_xref="InterPro:IPR005846"
                     /db_xref="InterPro:IPR006352"
                     /db_xref="InterPro:IPR016055"
                     /db_xref="InterPro:IPR016066"
                     /db_xref="InterPro:IPR036900"
                     /db_xref="SubtiList:BG12704"
                     /db_xref="UniProtKB/Swiss-Prot:O34824"
                     /translation="MGKYFGTDGVRGVANSELTPELAFKVGRFGGYVLTKDKQRPKVL
                     IGRDTRISGHMLEGALVAGLLSIGAEVMRLGVISTPGVSYLTKAMDAEAGVMISASHN
                     PVQDNGIKFFGGDGFKLSDEQEAEIERLMDEPEDKLPRPVGADLGLVNDYFEGGQKYL
                     QFLKQTADEDFTGIHVALDCANGATSSLATHLFADLDADVSTMGTSPNGLNINDGVGS
                     THPEALSAFVKEKNADLGLAFDGDGDRLIAVDEKGNIVDGDQIMYICSKHLKSEGRLK
                     DDTVVSTVMSNLGFYKALEKEGIKSVQTAVGDRYVVEAMKKDGYNVGGEQSGHLIFLD
                     YNTTGDGLLSAIMLMNTLKATGKPLSELAAEMQKFPQLLVNVRVTDKYKVEENEKVKA
                     VISEVEKEMNGDGRILVRPSGTEPLVRVMAEAKTKELCDEYVNRIVEVVRSEMGLE*"
                     /label="glmM CDS"
     gene            198096..199442
                     /gene="glmM"
                     /locus_tag="BSU_01770"
                     /old_locus_tag="BSU01770"
                     /label="glmM gene"
     downshifts      199437
                     /Source="Nicolas_upshifts"
                     /id="D64"
                     /incds=0
                     /nref=126
                     /ntot=216
                     /MaxReadThrough="5.32721"
                     /MaxDrop="5.02497"
                     /score="13.5044076"
                     /energy="-17.5"
                     /TU="U121"
                     /idTUdmin="U121"
                     /TUdmin="-110"
                     /isTUend="FALSE"
                     /label="downshifts"
     promotor_-35    199461..199469
                     /Source="Nicolas_upshift_promotors"
                     /id="U122"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp="0.754245754245754"
                     /psig="0.754245754245754"
                     /xcortree=649
                     /SigmaFactorBS="tccggtcagaaatgggattagagtaacgaagtctattatcag
                     agAGTGAACAAgacaagcgaggttTACATAAGATAATTGTGAGAcatacggcaaagtt
                     g"
                     /listShort="NA, S69, glmS"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     upshifts        199477
                     /Source="Nicolas_upshifts"
                     /id="U122"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp="0.754245754245754"
                     /psig="0.754245754245754"
                     /xcortree=649
                     /SigmaFactorBS="tccggtcagaaatgggattagagtaacgaagtctattatcag
                     agAGTGAACAAgacaagcgaggttTACATAAGATAATTGTGAGAcatacggcaaagtt
                     g"
                     /listShort="NA, S69, glmS"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-10    199483..199502
                     /Source="Nicolas_upshift_promotors"
                     /id="U122"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp="0.754245754245754"
                     /psig="0.754245754245754"
                     /xcortree=649
                     /SigmaFactorBS="tccggtcagaaatgggattagagtaacgaagtctattatcag
                     agAGTGAACAAgacaagcgaggttTACATAAGATAATTGTGAGAcatacggcaaagtt
                     g"
                     /listShort="NA, S69, glmS"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     promotor_-35    199529..199534
                     /Source="Nicolas_upshift_promotors"
                     /id="U123"
                     /multdbtbs="-"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp="0.623376623376623"
                     /psig="0.999000999001"
                     /xcortree=1722
                     /SigmaFactorBS="tgtgagacatacggcaaagttgcttaaaaaacaATTGACcgt
                     ttatgccacatgTTGTAAAATCAAGCTTGTCTtgttcttattttctcaataggaaaag
                     a"
                     /listShort="NA, S69, glmS"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    199550..199569
                     /Source="Nicolas_upshift_promotors"
                     /id="U123"
                     /multdbtbs="-"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp="0.623376623376623"
                     /psig="0.999000999001"
                     /xcortree=1722
                     /SigmaFactorBS="tgtgagacatacggcaaagttgcttaaaaaacaATTGACcgt
                     ttatgccacatgTTGTAAAATCAAGCTTGTCTtgttcttattttctcaataggaaaag
                     a"
                     /listShort="NA, S69, glmS"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        199556
                     /Source="Nicolas_upshifts"
                     /id="U123"
                     /multdbtbs="-"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp="0.623376623376623"
                     /psig="0.999000999001"
                     /xcortree=1722
                     /SigmaFactorBS="tgtgagacatacggcaaagttgcttaaaaaacaATTGACcgt
                     ttatgccacatgTTGTAAAATCAAGCTTGTCTtgttcttattttctcaataggaaaag
                     a"
                     /listShort="NA, S69, glmS"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     misc_feature    199600..199616
                     /Source="Nicolas_upshift_promotors"
                     /id="U124"
                     /multdbtbs="-"
                     /comp="M18"
                     /sig="Sig-"
                     /pcomp="0.497502497502497"
                     /psig="0.497502497502497"
                     /xcortree=336
                     /SigmaFactorBS="taaaatcaagcttgtcttgttcttattttctcaataggaaaa
                     gaagaCGGGATTATTGCTTTACctataattatagcgcccgaactaagcgcccggaaaa
                     a"
                     /listShort="NA, S69, glmS"
                     /GFF_Attribute="listLong"
                     /label="promotor_single_box"
                     /note="Geneious type: promotor_single_box"
     upshifts        199613
                     /Source="Nicolas_upshifts"
                     /id="U124"
                     /multdbtbs="-"
                     /comp="M18"
                     /sig="Sig-"
                     /pcomp="0.497502497502497"
                     /psig="0.497502497502497"
                     /xcortree=336
                     /SigmaFactorBS="taaaatcaagcttgtcttgttcttattttctcaataggaaaa
                     gaagaCGGGATTATTGCTTTACctataattatagcgcccgaactaagcgcccggaaaa
                     a"
                     /listShort="NA, S69, glmS"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     misc_RNA        199616..199786
                     /gene="glmSA"
                     /locus_tag="BSU_misc_RNA_5"
                     /product="riboswitch and ribozyme (GlmS-glucosamine-6-P)"
                     /experiment="publication(s) with functional evidences,
                     PMID:16298301, 16484375, 16990543, 17114942, 17283212,
                     18079181, 19228039, 21317896, 21395279, 21936556,
                     25038539, 26240071, 28012261"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 16298301, 16484375,
                     16990543, 17114942, 17283212, 18079181, 19228039,
                     21317896, 21395279, 21936556, 25038539, 26240071,
                     28012261; Product type n: RNA"
                     /label="glmSA RNA"
     gene            199616..199786
                     /gene="glmSA"
                     /locus_tag="BSU_misc_RNA_5"
                     /label="glmSA gene"
     S_feature       199787..199875
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_200188_200276"
                     /HighExp="M40t90, M0t90, M9-stat, Lbstat, T2.30H, T2.0H,
                     T3.0H, T1.30H, T1.0H, T3.30H"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="Sig-, SigA, SigK"
                     /TUshortPSig="0.498, 0.999, 0.754"
                     /TUlongSig="SigA, SigWXY, SigA"
                     /TUlongPSig="1, 1, 1"
                     /label="S69"
     CDS             199876..201678
                     /gene="glmS"
                     /locus_tag="BSU_01780"
                     /old_locus_tag="BSU01780"
                     /EC_number="2.6.1.16"
                     /function="16.13: Shape"
                     /function="16.2: Construct biomass (Anabolism)"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 2a: Function from experimental evidences
                     in other organisms; PubMedId: 12682299, 15029187,
                     17114942, 17283212, 17322533, 23874669; Product type e :
                     enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="L-glutamine-D-fructose-6-phosphate
                     amidotransferase"
                     /protein_id="NP_388059.1"
                     /db_xref="EnsemblGenomes-Gn:BSU01780"
                     /db_xref="EnsemblGenomes-Tr:CAB11954"
                     /db_xref="GOA:P0CI73"
                     /db_xref="InterPro:IPR001347"
                     /db_xref="InterPro:IPR005855"
                     /db_xref="InterPro:IPR017932"
                     /db_xref="InterPro:IPR029055"
                     /db_xref="InterPro:IPR035466"
                     /db_xref="InterPro:IPR035490"
                     /db_xref="SubtiList:BG10948"
                     /db_xref="UniProtKB/Swiss-Prot:P0CI73"
                     /translation="MCGIVGYIGQLDAKEILLKGLEKLEYRGYDSAGIAVANEQGIHV
                     FKEKGRIADLREVVDANVEAKAGIGHTRWATHGEPSYLNAHPHQSALGRFTLVHNGVI
                     ENYVQLKQEYLQDVELKSDTDTEVVVQVIEQFVNGGLETEEAFRKTLTLLKGSYAIAL
                     FDNDNRETIFVAKNKSPLLVGLGDTFNVVASDAMAMLQVTNEYVELMDKEMVIVTDDQ
                     VVIKNLDGDVITRASYIAELDASDIEKGTYPHYMLKETDEQPVVMRKIIQTYQDENGK
                     LSVPGDIAAAVAEADRIYIIGCGTSYHAGLVGKQYIEMWANVPVEVHVASEFSYNMPL
                     LSKKPLFIFLSQSGETADSRAVLVQVKALGHKALTITNVPGSTLSREADYTLLLHAGP
                     EIAVASTKAYTAQIAVLAVLASVAADKNGINIGFDLVKELGIAANAMEALCDQKDEME
                     MIAREYLTVSRNAFFIGRGLDYFVCVEGALKLKEISYIQAEGFAGGELKHGTIALIEQ
                     GTPVFALATQEHVNLSIRGNVKEVAARGANTCIISLKGLDDADDRFVLPEVNPALAPL
                     VSVVPLQLIAYYAALHRGCDVDKPRNLAKSVTVE*"
                     /label="glmS CDS"
     gene            199876..201678
                     /gene="glmS"
                     /locus_tag="BSU_01780"
                     /old_locus_tag="BSU01780"
                     /label="glmS gene"
     S_feature       complement(201401..>201681)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_201802_202546_c"
                     /HighExp="S8, S7, S6, S5, S4, BC, S3, Sw, C30, LoTm"
                     /AntisenseName="glmS"
                     /AntisenseCor="4.5056549205256403E-2"
                     /AntisenseRegPval="-0.3"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.963"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S70"
     downshifts      201664
                     /Source="Nicolas_upshifts"
                     /id="D65"
                     /incds=0
                     /nref=260
                     /ntot=277
                     /MaxReadThrough="3.18134"
                     /MaxDrop="7.61794"
                     /score="13.5044076"
                     /energy="-17.5"
                     /TU="NA"
                     /idTUdmin="U122"
                     /TUdmin=2
                     /isTUend="TRUE"
                     /label="downshifts"
     SCAR            join(201681,201727)
                     /created_by="User"
                     /note="deletion occured in betwen marked nucleotides"
                     /modified_by="User"
                     /label="Delta4"
     N_region        201682..201726
                     /note="insertion of 45 bases of unknown origin"
                     /modified_by="User"
                     /label="Delta4"
     S_feature       <201727..201845
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_220105_220278"
                     /HighExp="LoTm, T5.0H, T4.0H, T3.30H, Pyr, T-2.40H, T3.0H,
                     T-5.40H, S2, LBGstat"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.984"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S79"
     CDS             201846..202823
                     /gene="ybdG"
                     /locus_tag="BSU_01990"
                     /old_locus_tag="BSU01990"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative hydrolase/transferase"
                     /protein_id="NP_388081.2"
                     /db_xref="EnsemblGenomes-Gn:BSU01990"
                     /db_xref="EnsemblGenomes-Tr:CAB11993"
                     /db_xref="GOA:O31431"
                     /db_xref="InterPro:IPR000073"
                     /db_xref="InterPro:IPR029058"
                     /db_xref="SubtiList:BG12722"
                     /db_xref="UniProtKB/Swiss-Prot:O31431"
                     /translation="MKTLWKVLKIVFVSLAALVLLVSVSVFIYHHFQLNKEAALLKGK
                     GTVVDVDGKKMNVYQEGSGKDTFVFMSGSGIAAPAYEMKGLYSKFSKENKIAVVDRAG
                     YGYSEVSHDDRDIDTVLEQTRKALMKSGNKPPYILMPHSISGIEAMYWAQKYPKEIKA
                     IIAMDIGLPQQYVTYKLSGVDRLKVRGFHLLTSIGFHRFIPSAVYNPEVIRQSFLTDE
                     EKEIYKAINFKQFFNADMEHELLQSYQNGSKSVNLPAPKETPVLILDAVSDQNRHSKY
                     AIQNRKDYEAFAAQFNTADIKELRGTHSIYLYQPDQIYKLSMEFMRKVR*"
                     /label="ybdG CDS"
     gene            201846..202823
                     /gene="ybdG"
                     /locus_tag="BSU_01990"
                     /old_locus_tag="BSU01990"
                     /label="ybdG gene"
     CDS             202825..203496
                     /gene="ybdJ"
                     /locus_tag="BSU_02000"
                     /old_locus_tag="BSU02000"
                     /function="16.3: Control"
                     /experiment="publication(s) with functional evidences,
                     PMID:11717295, 20035725"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 11717295, 20035725;
                     Product type r: regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system response regulator [YbdK]"
                     /protein_id="NP_388082.1"
                     /db_xref="EnsemblGenomes-Gn:BSU02000"
                     /db_xref="EnsemblGenomes-Tr:CAB11994"
                     /db_xref="GOA:O31432"
                     /db_xref="InterPro:IPR001789"
                     /db_xref="InterPro:IPR001867"
                     /db_xref="InterPro:IPR011006"
                     /db_xref="InterPro:IPR016032"
                     /db_xref="InterPro:IPR036388"
                     /db_xref="SubtiList:BG12723"
                     /db_xref="UniProtKB/Swiss-Prot:O31432"
                     /translation="MKGYRILIVEDDVMIGDLLQKILQREGYRVIWKTDGADVLSVIQ
                     KVDLVIMDVMLPGEDGYQMSAKIKKLGLGIPVIFLSARNDMDSKLQGLQIGEDYMVKP
                     FDPRELLLRMRNMLEHHYGTFTQIKHLYIDAVTKKVFNESLHDEVLFTAIERKIFFYL
                     YENRDSILTKEHFFEYLWQLEDRNPNIVNVHIKKIRAKINDQAGEMIENIYGEGYRLN
                     TVVKK*"
                     /label="ybdJ CDS"
     gene            202825..203496
                     /gene="ybdJ"
                     /locus_tag="BSU_02000"
                     /old_locus_tag="BSU02000"
                     /label="ybdJ gene"
     promotor_-35    203390..203396
                     /Source="Nicolas_upshift_promotors"
                     /id="U135"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.532467532467532"
                     /psig="0.929070929070929"
                     /xcortree=2962
                     /SigmaFactorBS="gatagaaacccgaatattgtcaATGTGCAtattaaaaaaatt
                     AGAGCTAAAATCAATGATCAagcgggtgagatgattgaaaatatatatggagaagggt
                     a"
                     /listShort="ybdK, ybzI"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    203410..203429
                     /Source="Nicolas_upshift_promotors"
                     /id="U135"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.532467532467532"
                     /psig="0.929070929070929"
                     /xcortree=2962
                     /SigmaFactorBS="gatagaaacccgaatattgtcaATGTGCAtattaaaaaaatt
                     AGAGCTAAAATCAATGATCAagcgggtgagatgattgaaaatatatatggagaagggt
                     a"
                     /listShort="ybdK, ybzI"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        203428
                     /Source="Nicolas_upshifts"
                     /id="U135"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.532467532467532"
                     /psig="0.929070929070929"
                     /xcortree=2962
                     /SigmaFactorBS="gatagaaacccgaatattgtcaATGTGCAtattaaaaaaatt
                     AGAGCTAAAATCAATGATCAagcgggtgagatgattgaaaatatatatggagaagggt
                     a"
                     /listShort="ybdK, ybzI"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             203517..204479
                     /gene="ybdK"
                     /locus_tag="BSU_02010"
                     /old_locus_tag="BSU02010"
                     /function="16.12: Sense"
                     /function="16.3: Control"
                     /experiment="publication(s) with functional evidences,
                     PMID:11717295, 20035725"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 11717295, 20035725;
                     Product type rc: receptor"
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system sensor histidine kinase
                     [YbdJ]"
                     /protein_id="NP_388083.1"
                     /db_xref="EnsemblGenomes-Gn:BSU02010"
                     /db_xref="EnsemblGenomes-Tr:CAB11995"
                     /db_xref="GOA:O31433"
                     /db_xref="InterPro:IPR003594"
                     /db_xref="InterPro:IPR003660"
                     /db_xref="InterPro:IPR003661"
                     /db_xref="InterPro:IPR005467"
                     /db_xref="InterPro:IPR036097"
                     /db_xref="InterPro:IPR036890"
                     /db_xref="SubtiList:BG12724"
                     /db_xref="UniProtKB/Swiss-Prot:O31433"
                     /translation="MLLFTAVISVPMLLLAVSVLMSVIYDSMFKPMNHGMPFHRSFAY
                     PAMIVVFLISLLLLAFLFSKSIHSLLHKINLLNQTIRHLASDQRVPDKIEVKRADEIG
                     ELIKSVNLLIERTTYRELELRQQEEIKKELLQKLRHDINTPLTALRLQLFYLEDQCHG
                     QAVFESLYQQIEYISELTNEFNLYSAETLESSYIVNEEVRLNELLETAVKKWDYLYSM
                     SGIELHYKPADQDVIWMSNTLWMERLFDNIFQNTLRHSKAKKMEVTIEHGDVFIRDDG
                     IGFDRNESSEGLGLKIIEDTCRLLAITYELHTNDNGTGFLFSKE*"
                     /label="ybdK CDS"
     gene            203517..204479
                     /gene="ybdK"
                     /locus_tag="BSU_02010"
                     /old_locus_tag="BSU02010"
                     /label="ybdK gene"
     promotor_-35    204491..204493
                     /Source="Nicolas_upshift_promotors"
                     /id="U136"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.866133866133866"
                     /psig="0.999000999001"
                     /xcortree=2204
                     /SigmaFactorBS="aacggggttcttgttttcaaaagagtgaccccgctgatgTTT
                     ttctttctcctataaAATTTATATAATAGGGAGAAagaaatggggtgaacatcatatg
                     t"
                     /listShort="ybzI"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    204509..204528
                     /Source="Nicolas_upshift_promotors"
                     /id="U136"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.866133866133866"
                     /psig="0.999000999001"
                     /xcortree=2204
                     /SigmaFactorBS="aacggggttcttgttttcaaaagagtgaccccgctgatgTTT
                     ttctttctcctataaAATTTATATAATAGGGAGAAagaaatggggtgaacatcatatg
                     t"
                     /listShort="ybzI"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        204512
                     /Source="Nicolas_upshifts"
                     /id="U136"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.866133866133866"
                     /psig="0.999000999001"
                     /xcortree=2204
                     /SigmaFactorBS="aacggggttcttgttttcaaaagagtgaccccgctgatgTTT
                     ttctttctcctataaAATTTATATAATAGGGAGAAagaaatggggtgaacatcatatg
                     t"
                     /listShort="ybzI"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             204538..204801
                     /gene="ybzI"
                     /locus_tag="BSU_02019"
                     /old_locus_tag="BSU02019"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved protein of unknown function"
                     /protein_id="YP_003097672.1"
                     /db_xref="EnsemblGenomes-Gn:BSU02019"
                     /db_xref="EnsemblGenomes-Tr:CAX52542"
                     /db_xref="UniProtKB/Swiss-Prot:C0H3T1"
                     /translation="MNIICLKKSSKRLSTSQAVLVTDIADTGITAAAGADIIAATAAV
                     RAKEDTTTVMAAVIVTNAGATAAVNPKKVLVPLLGQGFFYVTD*"
                     /label="ybzI CDS"
     gene            204538..204801
                     /gene="ybzI"
                     /locus_tag="BSU_02019"
                     /old_locus_tag="BSU02019"
                     /label="ybzI gene"
     downshifts      204742
                     /Source="Nicolas_upshifts"
                     /id="D73"
                     /incds=0
                     /nref=120
                     /ntot=235
                     /MaxReadThrough="2.82444"
                     /MaxDrop="4.652"
                     /score="22.3698707"
                     /energy="-12.1"
                     /TU="U135"
                     /idTUdmin="U136"
                     /TUdmin="-6"
                     /isTUend="TRUE"
                     /label="downshifts"
     CDS             complement(204786..205556)
                     /gene="ybdM"
                     /locus_tag="BSU_02030"
                     /old_locus_tag="BSU02030"
                     /EC_number="2.7.11.-"
                     /function="16.3: Control"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 21304896; Product type
                     e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative protein kinase"
                     /protein_id="NP_388085.1"
                     /db_xref="EnsemblGenomes-Gn:BSU02030"
                     /db_xref="EnsemblGenomes-Tr:CAB11997"
                     /db_xref="GOA:O31435"
                     /db_xref="InterPro:IPR000719"
                     /db_xref="InterPro:IPR011009"
                     /db_xref="InterPro:IPR017441"
                     /db_xref="SubtiList:BG12726"
                     /db_xref="UniProtKB/Swiss-Prot:O31435"
                     /translation="MALKLLKKLLFDRPLKNGVILNHQYKIEECLGMGGYGLVYLCTD
                     ILAQTPYVLKQLRPTKAKKEKEKVRFQQEIKLLKNIHHPQIPGFIDEFIIDGQAYYVM
                     QFIEGENIEELLFFRKQPFTELMALQLISQLLEIIEYLHDRLIFHSDIRTPNIIINDG
                     RLCLIDFGLAKQLTPEEMEEIKVRKQDDFFDLGETLLFLLYSQYKGKKKKNGTWLEEL
                     TLTKEVTLLLKRLLGIEEEYQHTASIREDLNRAIQSVT*"
                     /label="ybdM CDS"
     gene            complement(204786..205556)
                     /gene="ybdM"
                     /locus_tag="BSU_02030"
                     /old_locus_tag="BSU02030"
                     /label="ybdM gene"
     CDS             complement(205642..206499)
                     /gene="ybdN"
                     /locus_tag="BSU_02040"
                     /old_locus_tag="BSU02040"
                     /function="16.5: Explore"
                     /function="16.13: Shape"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 16794953; Product type
                     h: extrachromosomal origin"
                     /codon_start=1
                     /transl_table=11
                     /product="putative phage protein; prophage region 1"
                     /protein_id="NP_388086.1"
                     /db_xref="EnsemblGenomes-Gn:BSU02040"
                     /db_xref="EnsemblGenomes-Tr:CAB11998"
                     /db_xref="SubtiList:BG12727"
                     /db_xref="UniProtKB/Swiss-Prot:O31436"
                     /translation="MVKKWLIQFAVMLSVLSTFTYSASAVGVTAITGNNSFDTAMPIG
                     YWKYKNIDTTILEAGQDEAYFTFTANKGEKVYMRSTYQSAYTGMKIEIYDKNRIPVSQ
                     GTEVINPNTFSSFIYANADAQNTTDTFYVKVSRGTYTGNMYFTLSIEDRIKSGSGTFQ
                     FSGVAENKGNTSLSPSGSDSSVIKVDLTNQSGIPRDAIVTRVQTTATQTPSQGNTRHL
                     IMTSENNEWSRALVNSSTSGSYDISLSDQLSVAKVWSFKYNTLATARSTMSNVKAKID
                     YEYDVTKQF*"
                     /label="ybdN CDS"
     gene            complement(205642..206499)
                     /gene="ybdN"
                     /locus_tag="BSU_02040"
                     /old_locus_tag="BSU02040"
                     /label="ybdN gene"
     downshifts      complement(205664)
                     /Source="Nicolas_upshifts"
                     /id="D74"
                     /incds=0
                     /nref=95
                     /ntot=184
                     /MaxReadThrough="1.56932"
                     /MaxDrop="4.95806"
                     /score="36.4950689"
                     /energy="-11.9"
                     /TU="NA"
                     /idTUdmin="U137"
                     /TUdmin="-4"
                     /isTUend="TRUE"
                     /label="downshifts"
     promotor_-10    complement(205713..205732)
                     /Source="Nicolas_upshift_promotors"
                     /id="U137"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp="0.99000999000999"
                     /psig="0.99000999000999"
                     /xcortree=1343
                     /SigmaFactorBS="ttgtaaacagctcgacttcagggtcttatgatatctctttgt
                     cggatcaactcAGTGTGGCAAaggtatggagtttTAAATATAATACATTAGCGAcagc
                     c"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     promotor_-35    complement(205746..205755)
                     /Source="Nicolas_upshift_promotors"
                     /id="U137"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp="0.99000999000999"
                     /psig="0.99000999000999"
                     /xcortree=1343
                     /SigmaFactorBS="ttgtaaacagctcgacttcagggtcttatgatatctctttgt
                     cggatcaactcAGTGTGGCAAaggtatggagtttTAAATATAATACATTAGCGAcagc
                     c"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     upshifts        complement(205748)
                     /Source="Nicolas_upshifts"
                     /id="U137"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp="0.99000999000999"
                     /psig="0.99000999000999"
                     /xcortree=1343
                     /SigmaFactorBS="ttgtaaacagctcgacttcagggtcttatgatatctctttgt
                     cggatcaactcAGTGTGGCAAaggtatggagtttTAAATATAATACATTAGCGAcagc
                     c"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-10    complement(206512..206531)
                     /Source="Nicolas_upshift_promotors"
                     /id="U138"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.754245754245754"
                     /psig=1
                     /xcortree=2923
                     /SigmaFactorBS="ttttatcggcgaatataatgtatatattaacctcaaaaaaca
                     ttTATTTACAcctaaatcgttattATGTATGATGGAAATAAAAGgaggttgtttgcat
                     g"
                     /listShort="ybdN"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(206537)
                     /Source="Nicolas_upshifts"
                     /id="U138"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.754245754245754"
                     /psig=1
                     /xcortree=2923
                     /SigmaFactorBS="ttttatcggcgaatataatgtatatattaacctcaaaaaaca
                     ttTATTTACAcctaaatcgttattATGTATGATGGAAATAAAAGgaggttgtttgcat
                     g"
                     /listShort="ybdN"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(206546..206553)
                     /Source="Nicolas_upshift_promotors"
                     /id="U138"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.754245754245754"
                     /psig=1
                     /xcortree=2923
                     /SigmaFactorBS="ttttatcggcgaatataatgtatatattaacctcaaaaaaca
                     ttTATTTACAcctaaatcgttattATGTATGATGGAAATAAAAGgaggttgtttgcat
                     g"
                     /listShort="ybdN"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-35    206567..206574
                     /Source="Nicolas_upshift_promotors"
                     /id="U139"
                     /multdbtbs="SigD"
                     /comp="M10"
                     /sig="SigD"
                     /pcomp=1
                     /psig=1
                     /xcortree=2834
                     /SigmaFactorBS="ataataacgatttaggtgtaaataaatgttttttgagGTTAA
                     TATatacattatattcGCCGATAAAAAAGAATAAGagagaatactcgggagggaattc
                     a"
                     /listShort="ybdO"
                     /listLong="S80, ybxG"
                     /label="promotor_-35"
     promotor_-10    206588..206606
                     /Source="Nicolas_upshift_promotors"
                     /id="U139"
                     /multdbtbs="SigD"
                     /comp="M10"
                     /sig="SigD"
                     /pcomp=1
                     /psig=1
                     /xcortree=2834
                     /SigmaFactorBS="ataataacgatttaggtgtaaataaatgttttttgagGTTAA
                     TATatacattatattcGCCGATAAAAAAGAATAAGagagaatactcgggagggaattc
                     a"
                     /listShort="ybdO"
                     /listLong="S80, ybxG"
                     /label="promotor_-10"
     upshifts        206590
                     /Source="Nicolas_upshifts"
                     /id="U139"
                     /multdbtbs="SigD"
                     /comp="M10"
                     /sig="SigD"
                     /pcomp=1
                     /psig=1
                     /xcortree=2834
                     /SigmaFactorBS="ataataacgatttaggtgtaaataaatgttttttgagGTTAA
                     TATatacattatattcGCCGATAAAAAAGAATAAGagagaatactcgggagggaattc
                     a"
                     /listShort="ybdO"
                     /listLong="S80, ybxG"
                     /label="upshifts"
     CDS             206631..207815
                     /gene="ybdO"
                     /locus_tag="BSU_02050"
                     /old_locus_tag="BSU02050"
                     /function="16.5: Explore"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 15033535; Product type
                     h: extrachromosomal origin"
                     /codon_start=1
                     /transl_table=11
                     /product="putative phage protein; prophage region 1"
                     /protein_id="NP_388087.1"
                     /db_xref="EnsemblGenomes-Gn:BSU02050"
                     /db_xref="EnsemblGenomes-Tr:CAB11999"
                     /db_xref="InterPro:IPR032617"
                     /db_xref="SubtiList:BG12728"
                     /db_xref="UniProtKB/Swiss-Prot:O31437"
                     /translation="MRLNRQFIRTQLIAQNILSKNAPAKRENATENPAAVLEKAYSRL
                     KSQSSTGGINQFNYSKTSVSGNSGTFSKVYQSANDRTVTDTGEETVIQSQNPYESESD
                     IRIKILDEKYSRMNAINKTKSDPLGYIKDKYQNSKSPYFRSDLSAAERQAAYDNETEW
                     LFKGKAQNYNLQDAVFRNVTFHGEVEAENEKVYQRGQVNQQLQVLLNRNHIHIPEGTE
                     LTFTITPIDYQVRVSGTDDQDLIKQIEQVLQSGDNSKELFLHIMKSQSSDSAQFSEEA
                     YKKYQAAREMYEVTGYHLKDLEVIDGRYVTPEGRDLMDVYKEELEKDPVQKQTASYAI
                     SYYRSELSKIAEAGYNAIPDFILSIDYSNGSLRDVGQSKSYGTGDTGWLEALKRQTGV
                     NY*"
                     /label="ybdO CDS"
     gene            206631..207815
                     /gene="ybdO"
                     /locus_tag="BSU_02050"
                     /old_locus_tag="BSU02050"
                     /label="ybdO gene"
     downshifts      207801
                     /Source="Nicolas_upshifts"
                     /id="D75"
                     /incds=0
                     /nref=107
                     /ntot=207
                     /MaxReadThrough="2.98334"
                     /MaxDrop="4.9582"
                     /score="-3.87053033"
                     /energy="-8.3"
                     /TU="U139"
                     /idTUdmin="U139"
                     /TUdmin="-181"
                     /isTUend="FALSE"
                     /label="downshifts"
     promotor_-35    207969..207975
                     /Source="Nicolas_upshift_promotors"
                     /id="U140"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.430569430569431"
                     /psig="0.999000999001"
                     /xcortree=2998
                     /SigmaFactorBS="aacaaaggtgtttacctgaaaaaaacAATTGTAttttccaga
                     gaaaTTTATTATGATGAAATAAGTaatttaggagattatataacaattttaagtttga
                     a"
                     /listShort="S80, ybxG"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    207989..208008
                     /Source="Nicolas_upshift_promotors"
                     /id="U140"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.430569430569431"
                     /psig="0.999000999001"
                     /xcortree=2998
                     /SigmaFactorBS="aacaaaggtgtttacctgaaaaaaacAATTGTAttttccaga
                     gaaaTTTATTATGATGAAATAAGTaatttaggagattatataacaattttaagtttga
                     a"
                     /listShort="S80, ybxG"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     S_feature       208003..208132
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_226436_226565"
                     /HighExp="Glu, LoTm, M9-stat, G135, GM-0.2, T-0.40H, Fru,
                     UNK1, MG 120, GM-0.1"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.999"
                     /TUlongSig="SigD"
                     /TUlongPSig=1
                     /label="S80"
     upshifts        208003
                     /Source="Nicolas_upshifts"
                     /id="U140"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.430569430569431"
                     /psig="0.999000999001"
                     /xcortree=2998
                     /SigmaFactorBS="aacaaaggtgtttacctgaaaaaaacAATTGTAttttccaga
                     gaaaTTTATTATGATGAAATAAGTaatttaggagattatataacaattttaagtttga
                     a"
                     /listShort="S80, ybxG"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             208133..209521
                     /gene="ybxG"
                     /locus_tag="BSU_02060"
                     /old_locus_tag="BSU02060"
                     /function="16.1: Circulate"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 15849754, 16850406;
                     Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="putative amino acid permease"
                     /protein_id="NP_388088.1"
                     /db_xref="EnsemblGenomes-Gn:BSU02060"
                     /db_xref="EnsemblGenomes-Tr:CAB12000"
                     /db_xref="GOA:P54425"
                     /db_xref="InterPro:IPR002293"
                     /db_xref="InterPro:IPR004840"
                     /db_xref="InterPro:IPR004841"
                     /db_xref="SubtiList:BG11505"
                     /db_xref="UniProtKB/Swiss-Prot:P54425"
                     /translation="MANKELKRGLGARHIQMIALGGTIGVGLFMGSASTISWTGPSVL
                     LAYAICGIFIFFIMRAMGEMLYVEPSTGSFATFGHQYIHPMAGYITAWSNWFQWIIVG
                     MSEIIAVGSYTKYWFPDLPAWIPGIVAMVILGAANLISVKSFGEFEFWFAMIKIVTII
                     LMIIAGIGIIFFGFGNGGDAIGLSNLWSHGGFFAGGFSGFFFALSLVIAAYQGVELIG
                     ITAGEAKDPQNTLRNAIQSIIWRILIFYIGAIFVIVTVYPWDELNSLGSPFVSTFSKI
                     GITAAAGIINFVVITAAMSGCNSGIFSAGRMLYTLGVNGQAPKFFKKISRNGVPLYGT
                     IAVLIGLAVGVVLNYIAPPKIFVYVYSASVLPGMIPWFIILISHIGFRKAKGAALDKH
                     PFKMPFAPFTNYLTIAFLLMVLVGMWFNDDTRISLIVGVIFLALVVISYYVFGIGKRT
                     QANLTKSEQAAE*"
                     /label="ybxG CDS"
     gene            208133..209521
                     /gene="ybxG"
                     /locus_tag="BSU_02060"
                     /old_locus_tag="BSU02060"
                     /label="ybxG gene"
     downshifts      209529
                     /Source="Nicolas_upshifts"
                     /id="D76"
                     /incds=0
                     /nref=121
                     /ntot=219
                     /MaxReadThrough="2.32902"
                     /MaxDrop="5.72049"
                     /score="28.6554212"
                     /energy="-8.5"
                     /TU="NA"
                     /idTUdmin="U140"
                     /TUdmin="-15"
                     /isTUend="TRUE"
                     /label="downshifts"
     promotor_-35    209567..209573
                     /Source="Nicolas_upshift_promotors"
                     /id="U141"
                     /multdbtbs="SigG"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp="0.999000999001"
                     /psig="0.999000999001"
                     /xcortree=938
                     /SigmaFactorBS="aaaagagacattcacggatgtctctttttttatttttcgCGT
                     ATGGattttccctatttTAGCAAGCTATAgggtaaagatagcagaaggaaaggtgttc
                     a"
                     /listShort="csgA, ybxH"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    209587..209598
                     /Source="Nicolas_upshift_promotors"
                     /id="U141"
                     /multdbtbs="SigG"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp="0.999000999001"
                     /psig="0.999000999001"
                     /xcortree=938
                     /SigmaFactorBS="aaaagagacattcacggatgtctctttttttatttttcgCGT
                     ATGGattttccctatttTAGCAAGCTATAgggtaaagatagcagaaggaaaggtgttc
                     a"
                     /listShort="csgA, ybxH"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        209588
                     /Source="Nicolas_upshifts"
                     /id="U141"
                     /multdbtbs="SigG"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp="0.999000999001"
                     /psig="0.999000999001"
                     /xcortree=938
                     /SigmaFactorBS="aaaagagacattcacggatgtctctttttttatttttcgCGT
                     ATGGattttccctatttTAGCAAGCTATAgggtaaagatagcagaaggaaaggtgttc
                     a"
                     /listShort="csgA, ybxH"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             209633..209881
                     /gene="csgA"
                     /locus_tag="BSU_02070"
                     /old_locus_tag="BSU02070"
                     /function="16.5: Explore"
                     /experiment="publication(s) with functional evidences,
                     PMID:9016963"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 9016963; Product type cp:
                     cell process"
                     /codon_start=1
                     /transl_table=11
                     /product="sporulation-specific SASP protein"
                     /protein_id="NP_388089.1"
                     /db_xref="EnsemblGenomes-Gn:BSU02070"
                     /db_xref="EnsemblGenomes-Tr:CAB12001"
                     /db_xref="GOA:P54379"
                     /db_xref="InterPro:IPR020255"
                     /db_xref="SubtiList:BG11504"
                     /db_xref="UniProtKB/Swiss-Prot:P54379"
                     /translation="MDVTLGYLRESLSNHLENEVCQRICKKMLAKRYANEEEFVKDLD
                     DNEMSFLNHVLEKEIKYAQNEQDQKRAKELNEVYELLL*"
                     /label="csgA CDS"
     gene            209633..209881
                     /gene="csgA"
                     /locus_tag="BSU_02070"
                     /old_locus_tag="BSU02070"
                     /label="csgA gene"
     CDS             209898..210089
                     /gene="ybxH"
                     /locus_tag="BSU_02080"
                     /old_locus_tag="BSU02080"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved protein of unknown function"
                     /protein_id="NP_388090.1"
                     /db_xref="EnsemblGenomes-Gn:BSU02080"
                     /db_xref="EnsemblGenomes-Tr:CAB12002"
                     /db_xref="InterPro:IPR035314"
                     /db_xref="SubtiList:BG11506"
                     /db_xref="UniProtKB/Swiss-Prot:P54426"
                     /translation="MGAIERSGYTFQPEFSVVRQNGAIHVYHQGEFVEEIEFEFNGEY
                     PDHDLIEELVNHYCFEHEI*"
                     /label="ybxH CDS"
     gene            209898..210089
                     /gene="ybxH"
                     /locus_tag="BSU_02080"
                     /old_locus_tag="BSU02080"
                     /label="ybxH gene"
     downshifts      210071
                     /Source="Nicolas_upshifts"
                     /id="D77"
                     /incds=0
                     /nref=17
                     /ntot=40
                     /MaxReadThrough="0.194030000000001"
                     /MaxDrop="4.779"
                     /score="29.4617878"
                     /energy="-15.6"
                     /TU="NA"
                     /idTUdmin="U141"
                     /TUdmin="-1"
                     /isTUend="TRUE"
                     /label="downshifts"
     CDS             complement(210116..210919)
                     /gene="ybxI"
                     /locus_tag="BSU_02090"
                     /old_locus_tag="BSU02090"
                     /EC_number="3.5.2.6"
                     /function="16.11: Scavenge (Catabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:14742199"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 14742199; Product type e:
                     enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="exported beta-lactamase"
                     /protein_id="NP_388091.1"
                     /db_xref="EnsemblGenomes-Gn:BSU02090"
                     /db_xref="EnsemblGenomes-Tr:CAB12003"
                     /db_xref="GOA:P54427"
                     /db_xref="InterPro:IPR001460"
                     /db_xref="InterPro:IPR002137"
                     /db_xref="InterPro:IPR012338"
                     /db_xref="PDB:5E2F"
                     /db_xref="SubtiList:BG11507"
                     /db_xref="UniProtKB/Swiss-Prot:P54427"
                     /translation="MKKWIYVVLVLSIAGIGGFSVHAASSAHEKHLNVSKMNVDDEFK
                     DTDGTFILHDLQKDQTFVYNRKRANQRQTPQSTFKVVNALIGLQVKAVRDEYDVKRWD
                     GVKREFESWNRDHTLGSAMRESAIWYYQALARDIGEERMKTWLHTLSYGNEDISGGID
                     QFWLQSSLTISPLEQETFLEKLAKEELPFDKPVMKIVKRMMIQEEGDHYTLYGKTGTR
                     LTDMGLGWFVGFIKTEHGSYVFVTNVDDSGTKAKNITVDILKKYGLITS*"
                     /label="ybxI CDS"
     gene            complement(210116..210919)
                     /gene="ybxI"
                     /locus_tag="BSU_02090"
                     /old_locus_tag="BSU02090"
                     /label="ybxI gene"
     promotor_-10    complement(210941..210959)
                     /Source="Nicolas_upshift_promotors"
                     /id="U142"
                     /multdbtbs="-"
                     /comp="M1"
                     /sig="SigH"
                     /pcomp=1
                     /psig=1
                     /xcortree=3196
                     /SigmaFactorBS="accaaatttaagcgctttttgattattttttAAAGGAAGAac
                     aaacgaaaGAGAGAAAAGGTAGTTAATcaaaacgaaggggagaacaaaatgaaaaaat
                     g"
                     /listShort="ybxI"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(210949)
                     /Source="Nicolas_upshifts"
                     /id="U142"
                     /multdbtbs="-"
                     /comp="M1"
                     /sig="SigH"
                     /pcomp=1
                     /psig=1
                     /xcortree=3196
                     /SigmaFactorBS="accaaatttaagcgctttttgattattttttAAAGGAAGAac
                     aaacgaaaGAGAGAAAAGGTAGTTAATcaaaacgaaggggagaacaaaatgaaaaaat
                     g"
                     /listShort="ybxI"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(210970..210978)
                     /Source="Nicolas_upshift_promotors"
                     /id="U142"
                     /multdbtbs="-"
                     /comp="M1"
                     /sig="SigH"
                     /pcomp=1
                     /psig=1
                     /xcortree=3196
                     /SigmaFactorBS="accaaatttaagcgctttttgattattttttAAAGGAAGAac
                     aaacgaaaGAGAGAAAAGGTAGTTAATcaaaacgaaggggagaacaaaatgaaaaaat
                     g"
                     /listShort="ybxI"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-35    211033..211039
                     /Source="Nicolas_upshift_promotors"
                     /id="U143"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp="0.999000999001"
                     /psig="0.999000999001"
                     /xcortree=163
                     /SigmaFactorBS="taaatttggttttgcaaacaaatactgttactgGGTTTATag
                     tcggaagataacGTGAAAATAGAGGGTAAAAaggaaggcagggtaagcggatgaatga
                     g"
                     /listShort="cypC"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    211054..211072
                     /Source="Nicolas_upshift_promotors"
                     /id="U143"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp="0.999000999001"
                     /psig="0.999000999001"
                     /xcortree=163
                     /SigmaFactorBS="taaatttggttttgcaaacaaatactgttactgGGTTTATag
                     tcggaagataacGTGAAAATAGAGGGTAAAAaggaaggcagggtaagcggatgaatga
                     g"
                     /listShort="cypC"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        211060
                     /Source="Nicolas_upshifts"
                     /id="U143"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp="0.999000999001"
                     /psig="0.999000999001"
                     /xcortree=163
                     /SigmaFactorBS="taaatttggttttgcaaacaaatactgttactgGGTTTATag
                     tcggaagataacGTGAAAATAGAGGGTAAAAaggaaggcagggtaagcggatgaatga
                     g"
                     /listShort="cypC"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             211092..212345
                     /gene="cypC"
                     /locus_tag="BSU_02100"
                     /old_locus_tag="BSU02100"
                     /EC_number="1.11.2.4"
                     /function="16.6: Maintain"
                     /function="16.11: Scavenge (Catabolism)"
                     /function="16.8: Protect"
                     /experiment="publication(s) with functional evidences,
                     PMID:10529095, 12519760, 21673922"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 10529095, 12519760,
                     21673922; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="fatty acid beta-hydroxylating cytochrome P450"
                     /protein_id="NP_388092.1"
                     /db_xref="EnsemblGenomes-Gn:BSU02100"
                     /db_xref="EnsemblGenomes-Tr:CAB12004"
                     /db_xref="GOA:O31440"
                     /db_xref="InterPro:IPR001128"
                     /db_xref="InterPro:IPR002401"
                     /db_xref="InterPro:IPR036396"
                     /db_xref="PDB:1IZO"
                     /db_xref="PDB:2ZQJ"
                     /db_xref="PDB:2ZQX"
                     /db_xref="SubtiList:BG12729"
                     /db_xref="UniProtKB/Swiss-Prot:O31440"
                     /translation="MNEQIPHDKSLDNSLTLLKEGYLFIKNRTERYNSDLFQARLLGK
                     NFICMTGAEAAKVFYDTDRFQRQNALPKRVQKSLFGVNAIQGMDGSAHIHRKMLFLSL
                     MTPPHQKRLAELMTEEWKAAVTRWEKADEVVLFEEAKEILCRVACYWAGVPLKETEVK
                     ERADDFIDMVDAFGAVGPRHWKGRRARPRAEEWIEVMIEDARAGLLKTTSGTALHEMA
                     FHTQEDGSQLDSRMAAIELINVLRPIVAISYFLVFSALALHEHPKYKEWLRSGNSRER
                     EMFVQEVRRYYPFGPFLGALVKKDFVWNNCEFKKGTSVLLDLYGTNHDPRLWDHPDEF
                     RPERFAEREENLFDMIPQGGGHAEKGHRCPGEGITIEVMKASLDFLVHQIEYDVPEQS
                     LHYSLARMPSLPESGFVMSGIRRKS*"
                     /label="cypC CDS"
     gene            211092..212345
                     /gene="cypC"
                     /locus_tag="BSU_02100"
                     /old_locus_tag="BSU02100"
                     /label="cypC gene"
     misc_feature    211404..211411
                     /Source="Nicolas_upshift_promotors"
                     /id="U144"
                     /multdbtbs="-"
                     /comp="M13"
                     /sig="Sig-"
                     /pcomp="0.454545454545455"
                     /psig="0.013986013986014"
                     /xcortree=116
                     /SigmaFactorBS="atggcagcgcgcatatccatcggaagatgctttttctgtcat
                     tgatgacaCCGCCGCAtcaaaaacgtttggctgagttgatgacagaggagtggaaagc
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_single_box"
                     /note="Geneious type: promotor_single_box"
     upshifts        211414
                     /Source="Nicolas_upshifts"
                     /id="U144"
                     /multdbtbs="-"
                     /comp="M13"
                     /sig="Sig-"
                     /pcomp="0.454545454545455"
                     /psig="0.013986013986014"
                     /xcortree=116
                     /SigmaFactorBS="atggcagcgcgcatatccatcggaagatgctttttctgtcat
                     tgatgacaCCGCCGCAtcaaaaacgtttggctgagttgatgacagaggagtggaaagc
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     downshifts      212338
                     /Source="Nicolas_upshifts"
                     /id="D78"
                     /incds=0
                     /nref=5
                     /ntot=36
                     /MaxReadThrough="2.65245"
                     /MaxDrop="6.12325"
                     /score="-7.42298703"
                     /energy="-14.7"
                     /TU="NA"
                     /idTUdmin="U143"
                     /TUdmin=0
                     /isTUend="TRUE"
                     /label="downshifts"
     CDS             complement(212386..212646)
                     /gene="ybyB"
                     /locus_tag="BSU_02110"
                     /old_locus_tag="BSU02110"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved protein of unknown function"
                     /protein_id="NP_388093.1"
                     /db_xref="EnsemblGenomes-Gn:BSU02110"
                     /db_xref="EnsemblGenomes-Tr:CAB12005"
                     /db_xref="SubtiList:BG12754"
                     /db_xref="UniProtKB/Swiss-Prot:O31441"
                     /translation="MKQKLLLSGLAVSTVGITSYLLKDPSNRQKAREFIHSMKMKITK
                     QPDMETFPVDKAGHPDPQDIEDNKMVSEGSMYPVQYYDEKKK*"
                     /label="ybyB CDS"
     gene            complement(212386..212646)
                     /gene="ybyB"
                     /locus_tag="BSU_02110"
                     /old_locus_tag="BSU02110"
                     /label="ybyB gene"
     downshifts      complement(212405)
                     /Source="Nicolas_upshifts"
                     /id="D79"
                     /incds=0
                     /nref=155
                     /ntot=247
                     /MaxReadThrough="3.63752"
                     /MaxDrop="7.83539"
                     /score="8.86703843"
                     /energy="-12.4"
                     /TU="U145"
                     /idTUdmin="U145"
                     /TUdmin="-387"
                     /isTUend="FALSE"
                     /label="downshifts"
     promotor_-10    complement(212676..212694)
                     /Source="Nicolas_upshift_promotors"
                     /id="U145"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp=1
                     /psig=1
                     /xcortree=227
                     /SigmaFactorBS="tactgttaattccaatgataaaaacacaacaGGTTTAGcaat
                     ttccaaaacGGGAATGATACAGGAAACActattcttaaaatagaaaggagtatcacca
                     t"
                     /listShort="ybyB"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(212685)
                     /Source="Nicolas_upshifts"
                     /id="U145"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp=1
                     /psig=1
                     /xcortree=227
                     /SigmaFactorBS="tactgttaattccaatgataaaaacacaacaGGTTTAGcaat
                     ttccaaaacGGGAATGATACAGGAAACActattcttaaaatagaaaggagtatcacca
                     t"
                     /listShort="ybyB"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(212708..212714)
                     /Source="Nicolas_upshift_promotors"
                     /id="U145"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp=1
                     /psig=1
                     /xcortree=227
                     /SigmaFactorBS="tactgttaattccaatgataaaaacacaacaGGTTTAGcaat
                     ttccaaaacGGGAATGATACAGGAAACActattcttaaaatagaaaggagtatcacca
                     t"
                     /listShort="ybyB"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-35    212838..212845
                     /Source="Nicolas_upshift_promotors"
                     /id="U146"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.999000999001"
                     /psig="0.999000999001"
                     /xcortree=2207
                     /SigmaFactorBS="atatacattgacttattatagatttcagtcaaaattcgataa
                     aTATTGACAaagtaaagtaatcagAATAATAATATAATTAGCAAgagaatgtcatcat
                     a"
                     /listShort="ybeC"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     upshifts        212855
                     /Source="Nicolas_upshifts"
                     /id="U146"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.999000999001"
                     /psig="0.999000999001"
                     /xcortree=2207
                     /SigmaFactorBS="atatacattgacttattatagatttcagtcaaaattcgataa
                     aTATTGACAaagtaaagtaatcagAATAATAATATAATTAGCAAgagaatgtcatcat
                     a"
                     /listShort="ybeC"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-10    212861..212880
                     /Source="Nicolas_upshift_promotors"
                     /id="U146"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.999000999001"
                     /psig="0.999000999001"
                     /xcortree=2207
                     /SigmaFactorBS="atatacattgacttattatagatttcagtcaaaattcgataa
                     aTATTGACAaagtaaagtaatcagAATAATAATATAATTAGCAAgagaatgtcatcat
                     a"
                     /listShort="ybeC"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     CDS             212915..214534
                     /gene="ybeC"
                     /locus_tag="BSU_02120"
                     /old_locus_tag="BSU02120"
                     /function="16.1: Circulate"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 15849754, 16850406;
                     Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="putative H+/amino acid transporter"
                     /protein_id="NP_388094.2"
                     /db_xref="EnsemblGenomes-Gn:BSU02120"
                     /db_xref="EnsemblGenomes-Tr:CAB12006"
                     /db_xref="GOA:Q45577"
                     /db_xref="InterPro:IPR002293"
                     /db_xref="SubtiList:BG12730"
                     /db_xref="UniProtKB/Swiss-Prot:Q45577"
                     /translation="MNQLHRRMGTFSLMMVGLGSMIGSGWLFGAWRAAQIAGPAAIIS
                     WVIGMVVILFIALSYSELGSMFPEAGGMVKYTQYSHGSFIGFIAGWANWIAIVSVIPV
                     EAVASVQYMSSWPWEWAKWTSGLVKNGTLTGEGLAFASVLLLIYFLLNYWTVNLFSKA
                     NSLITIFKIIIPGLTIGALLFVGFHGENFTGGQSIAPNGWASVLTAVATSGIVFAFNG
                     FQSPINMAGEAKNPGKSIPIAVVGSLFVATVIYVLLQIAFIGAVNPSDIAHGWSHLNF
                     NSPFADLAIALNINWLVIVLYADAFVSPSGTGITYTATTSRMIYGMEKNKYMPSIFGK
                     LHPIYGVPRQAMFFNLIVSFIFLFLFRGWGVLAEIISVATLISYITGPITVMTLRRTG
                     KDLYRPLRLKGLNVIAPLGFIFASLVLYWARWPLTGQVLFIILIGLPIYFYYQAKAKW
                     KGFGRNFKAGVWMVFYLLAMMVISYLGSDKFGGLNVIHYGWDMVLIAMVSLVFYVWAL
                     KSGYQTEYLKDAKEINSQLLNGQSEAAAGKE*"
                     /label="ybeC CDS"
     gene            212915..214534
                     /gene="ybeC"
                     /locus_tag="BSU_02120"
                     /old_locus_tag="BSU02120"
                     /label="ybeC gene"
     downshifts      214517
                     /Source="Nicolas_upshifts"
                     /id="D80"
                     /incds=0
                     /nref=183
                     /ntot=273
                     /MaxReadThrough="0.8051"
                     /MaxDrop="6.79949"
                     /score="24.7668372"
                     /energy="-12.2"
                     /TU="NA"
                     /idTUdmin="U146"
                     /TUdmin="-21"
                     /isTUend="TRUE"
                     /label="downshifts"
     CDS             complement(214581..215462)
                     /gene="glpQA"
                     /locus_tag="BSU_02130"
                     /old_locus_tag="BSU02130"
                     /EC_number="3.1.4.46"
                     /function="16.11: Scavenge (Catabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:10913081, 21966272"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 10913081, 21966272;
                     Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="secreted glycerophosphoryl diester
                     phosphodiesterase"
                     /protein_id="NP_388095.1"
                     /db_xref="EnsemblGenomes-Gn:BSU02130"
                     /db_xref="EnsemblGenomes-Tr:CAB12007"
                     /db_xref="GOA:P37965"
                     /db_xref="InterPro:IPR004129"
                     /db_xref="InterPro:IPR017946"
                     /db_xref="InterPro:IPR030395"
                     /db_xref="PDB:5T91"
                     /db_xref="PDB:5T9B"
                     /db_xref="PDB:5T9C"
                     /db_xref="SubtiList:BG10646"
                     /db_xref="UniProtKB/Swiss-Prot:P37965"
                     /translation="MRKNRILALFVLSLGLLSFMVTPVSAASKGNLLSPDRILTVAHR
                     GASGYVPEHTILSYETAQKMKADFIELDLQMTKDGKLIVMHDEKLDRTTNGMGWVKDH
                     TLADIKKLDAGSWFNEAYPEKAKPQYVGLKVPTLEEVLDRFGKHANYYIETKSPDTYP
                     GMEEKLIASLQKHKLLGKHSKPGQVIIQSFSKESLVKVHQLQPNLPTVQLLEAKQMAS
                     MTDAALEEIKTYAVGAGPDYKALNQENVRMIRSHGLLLHPYTVNNEADMHRLLDWGVT
                     GVFTNYPDLFHKVKKGY*"
                     /label="glpQA CDS"
     gene            complement(214581..215462)
                     /gene="glpQA"
                     /locus_tag="BSU_02130"
                     /old_locus_tag="BSU02130"
                     /label="glpQA gene"
     downshifts      complement(214592)
                     /Source="Nicolas_upshifts"
                     /id="D81"
                     /incds=0
                     /nref=61
                     /ntot=107
                     /MaxReadThrough="2.31368"
                     /MaxDrop="7.76277"
                     /score="9.56390732"
                     /energy="-11.4"
                     /TU="NA"
                     /idTUdmin="U147"
                     /TUdmin=0
                     /isTUend="TRUE"
                     /label="downshifts"
     upshifts        complement(215505)
                     /Source="Nicolas_upshifts"
                     /id="U147"
                     /multdbtbs="SigA"
                     /comp="M6"
                     /sig="Sig-"
                     /pcomp="0.738261738261738"
                     /psig="0.0999000999001"
                     /xcortree=4
                     /SigmaFactorBS="tttaagaaagacacataaaaGATTAATagttttccAACACGC
                     CGTTTACATCcgttttttattatgaaagacaggtagtgcttatctataaggaggagaa
                     a"
                     /listShort="glpQ"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-10    complement(215514..215530)
                     /Source="Nicolas_upshift_promotors"
                     /id="U147"
                     /multdbtbs="SigA"
                     /comp="M6"
                     /sig="Sig-"
                     /pcomp="0.738261738261738"
                     /psig="0.0999000999001"
                     /xcortree=4
                     /SigmaFactorBS="tttaagaaagacacataaaaGATTAATagttttccAACACGC
                     CGTTTACATCcgttttttattatgaaagacaggtagtgcttatctataaggaggagaa
                     a"
                     /listShort="glpQ"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     promotor_-35    complement(215539..215545)
                     /Source="Nicolas_upshift_promotors"
                     /id="U147"
                     /multdbtbs="SigA"
                     /comp="M6"
                     /sig="Sig-"
                     /pcomp="0.738261738261738"
                     /psig="0.0999000999001"
                     /xcortree=4
                     /SigmaFactorBS="tttaagaaagacacataaaaGATTAATagttttccAACACGC
                     CGTTTACATCcgttttttattatgaaagacaggtagtgcttatctataaggaggagaa
                     a"
                     /listShort="glpQ"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             complement(215561..216895)
                     /gene="glpT"
                     /locus_tag="BSU_02140"
                     /old_locus_tag="BSU02140"
                     /function="16.1: Circulate"
                     /experiment="publication(s) with functional evidences,
                     PMID:8012593, 11929549, 15849754, 16850406"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 8012593, 11929549,
                     15849754, 16850406; Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="sn-glycerol-3-phosphate permease"
                     /protein_id="NP_388096.1"
                     /db_xref="EnsemblGenomes-Gn:BSU02140"
                     /db_xref="EnsemblGenomes-Tr:CAB12008"
                     /db_xref="GOA:P37948"
                     /db_xref="InterPro:IPR000849"
                     /db_xref="InterPro:IPR005267"
                     /db_xref="InterPro:IPR011701"
                     /db_xref="InterPro:IPR020846"
                     /db_xref="InterPro:IPR021159"
                     /db_xref="InterPro:IPR036259"
                     /db_xref="SubtiList:BG10645"
                     /db_xref="UniProtKB/Swiss-Prot:P37948"
                     /translation="MLNIFKPAPHIERLDDSKMDAAYKRLRLQVFIGIFIGYAGYYLL
                     RKNFAFAIPYLQEQGFSKTELGLVLAAVSIAYGFSKFIMGMVSDRCNPRYFLATGLFL
                     SAIVNILFVSMPWVTSSVTIMFIFMFINGWFQGMGWPPCGRTMAHWFSISERGTKMSI
                     WNVAHNIGGGILAPLVTLGIAMFVTWKSVFFFPAIIAIIISFLIVLLVRDTPQSCGLP
                     PIEEYRNDYPKHAFKNQEKELTTKEILFQYVLNNKFLWYIAFANVFVYFVRYGVVDWA
                     PTYLTEAKGFSPEDSRWSYFLYEYAGIPGTILCGWISDRFFKSRRAPAGVLFMAGVFI
                     AVLVYWLNPAGNPLVDNIALISIGFLIYGPVMLIGLQAIDLAPKKAAGTAAGLTGFFG
                     YIGGSAFANAIMGFVVDRFNWNGGFIMLISSCILAIVFLALTWNTGKRAEHV*"
                     /label="glpT CDS"
     gene            complement(215561..216895)
                     /gene="glpT"
                     /locus_tag="BSU_02140"
                     /old_locus_tag="BSU02140"
                     /label="glpT gene"
     promotor_-35    216543..216552
                     /Source="Nicolas_upshift_promotors"
                     /id="U148"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp="0.999000999001"
                     /psig="0.999000999001"
                     /xcortree=1339
                     /SigmaFactorBS="cgttgataaacataaaaataaacatgatggtgacgctcGAAG
                     TCACCCaaggcattgaaaCGAATAGAATATTAACGATTgctgataaaaataggcctgt
                     c"
                     /listShort="S81, ybeF, ybfA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     S_feature       216565..217191
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_234998_235624"
                     /HighExp="S6, S8, S7, S5, BT, B36, G/S, C30, Pyr, B60"
                     /AntisenseName="glpT"
                     /AntisenseCor="-5.0958691169636701E-2"
                     /AntisenseRegPval="-0.4"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigK"
                     /TUshortPSig="0.999"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S81"
     promotor_-10    216565..216584
                     /Source="Nicolas_upshift_promotors"
                     /id="U148"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp="0.999000999001"
                     /psig="0.999000999001"
                     /xcortree=1339
                     /SigmaFactorBS="cgttgataaacataaaaataaacatgatggtgacgctcGAAG
                     TCACCCaaggcattgaaaCGAATAGAATATTAACGATTgctgataaaaataggcctgt
                     c"
                     /listShort="S81, ybeF, ybfA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        216565
                     /Source="Nicolas_upshifts"
                     /id="U148"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp="0.999000999001"
                     /psig="0.999000999001"
                     /xcortree=1339
                     /SigmaFactorBS="cgttgataaacataaaaataaacatgatggtgacgctcGAAG
                     TCACCCaaggcattgaaaCGAATAGAATATTAACGATTgctgataaaaataggcctgt
                     c"
                     /listShort="S81, ybeF, ybfA"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     S_feature       complement(216896..216968)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_235329_235401_c"
                     /HighExp="G150, Oxctl, Paraq, S0, Diami, H2O2, Lbexp,
                     dia5, dia0, T0.30H"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="Sig-, SigA"
                     /TUshortPSig="0.042, 0.935"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S82"
     promotor_no_box complement(216928..217028)
                     /Source="Nicolas_upshift_promotors"
                     /id="U149"
                     /multdbtbs="-"
                     /comp="M21"
                     /sig="Sig-"
                     /pcomp="0.370629370629371"
                     /psig="0.041958041958042"
                     /xcortree=1566
                     /SigmaFactorBS="tagcttggatggagatgaggagagccaggaatccaacccctt
                     ttgacaaggggtgttttctggctctttttgtttttcgggaaaggaggcacgccacaca
                     t"
                     /listShort="S82, glpT, glpQ"
                     /GFF_Attribute="listLong"
                     /label="promotor_no_box"
     upshifts        complement(216968)
                     /Source="Nicolas_upshifts"
                     /id="U149"
                     /multdbtbs="-"
                     /comp="M21"
                     /sig="Sig-"
                     /pcomp="0.370629370629371"
                     /psig="0.041958041958042"
                     /xcortree=1566
                     /SigmaFactorBS="tagcttggatggagatgaggagagccaggaatccaacccctt
                     ttgacaaggggtgttttctggctctttttgtttttcgggaaaggaggcacgccacaca
                     t"
                     /listShort="S82, glpT, glpQ"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     S_feature       complement(216970..217056)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_235403_235489_c"
                     /HighExp="G150, Oxctl, S0, Diami, Lbexp, dia5, Paraq,
                     dia0, T0.30H, H2O2"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.935"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S83"
     promotor_-10    complement(217046..217065)
                     /Source="Nicolas_upshift_promotors"
                     /id="U150"
                     /multdbtbs="SigA"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.396603396603397"
                     /psig="0.935064935064935"
                     /xcortree=1567
                     /SigmaFactorBS="tattcacttccctaaggcccaatttgaaaattaccCGTTTAC
                     AttcgctccggacTATGATAATTTAAGAAAGCGctatcatgataagttaatagcttgg
                     a"
                     /listShort="S83, S82, glpT, glpQ"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(217060)
                     /Source="Nicolas_upshifts"
                     /id="U150"
                     /multdbtbs="SigA"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.396603396603397"
                     /psig="0.935064935064935"
                     /xcortree=1567
                     /SigmaFactorBS="tattcacttccctaaggcccaatttgaaaattaccCGTTTAC
                     AttcgctccggacTATGATAATTTAAGAAAGCGctatcatgataagttaatagcttgg
                     a"
                     /listShort="S83, S82, glpT, glpQ"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(217078..217085)
                     /Source="Nicolas_upshift_promotors"
                     /id="U150"
                     /multdbtbs="SigA"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.396603396603397"
                     /psig="0.935064935064935"
                     /xcortree=1567
                     /SigmaFactorBS="tattcacttccctaaggcccaatttgaaaattaccCGTTTAC
                     AttcgctccggacTATGATAATTTAAGAAAGCGctatcatgataagttaatagcttgg
                     a"
                     /listShort="S83, S82, glpT, glpQ"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             217192..217440
                     /gene="ybeF"
                     /locus_tag="BSU_02150"
                     /old_locus_tag="BSU02150"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved protein of unknown function"
                     /protein_id="NP_388097.1"
                     /db_xref="EnsemblGenomes-Gn:BSU02150"
                     /db_xref="EnsemblGenomes-Tr:CAB12009"
                     /db_xref="GOA:O31442"
                     /db_xref="InterPro:IPR020258"
                     /db_xref="SubtiList:BG12731"
                     /db_xref="UniProtKB/Swiss-Prot:O31442"
                     /translation="MDELDIAFFILPLGIMLLSIVGTCICKNPYLMPMLSLVISLVLT
                     FTIFNQSFLGWAVVYSLVSLALSYITLIVVRKRKESGN*"
                     /label="ybeF CDS"
     gene            217192..217440
                     /gene="ybeF"
                     /locus_tag="BSU_02150"
                     /old_locus_tag="BSU02150"
                     /label="ybeF gene"
     promotor_-35    217464..217471
                     /Source="Nicolas_upshift_promotors"
                     /id="U151"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.801198801198801"
                     /psig="0.984015984015984"
                     /xcortree=3080
                     /SigmaFactorBS="gtaaggaaaaggaaggaatcaggaaattaaaaagacctcact
                     ttctaacatatCGTTGACTaaagcaactatatgtGATTATAATTGCTTTAGTCAacga
                     t"
                     /listShort="ybfA, ybfB"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     upshifts        217471
                     /Source="Nicolas_upshifts"
                     /id="U151"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.801198801198801"
                     /psig="0.984015984015984"
                     /xcortree=3080
                     /SigmaFactorBS="gtaaggaaaaggaaggaatcaggaaattaaaaagacctcact
                     ttctaacatatCGTTGACTaaagcaactatatgtGATTATAATTGCTTTAGTCAacga
                     t"
                     /listShort="ybfA, ybfB"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-10    217487..217506
                     /Source="Nicolas_upshift_promotors"
                     /id="U151"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.801198801198801"
                     /psig="0.984015984015984"
                     /xcortree=3080
                     /SigmaFactorBS="gtaaggaaaaggaaggaatcaggaaattaaaaagacctcact
                     ttctaacatatCGTTGACTaaagcaactatatgtGATTATAATTGCTTTAGTCAacga
                     t"
                     /listShort="ybfA, ybfB"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     CDS             217532..218449
                     /gene="ybfA"
                     /locus_tag="BSU_02160"
                     /old_locus_tag="BSU02160"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; Product type r: regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="putative transcriptional regulator with
                     acetyltransferase domain"
                     /protein_id="NP_388098.1"
                     /db_xref="EnsemblGenomes-Gn:BSU02160"
                     /db_xref="EnsemblGenomes-Tr:CAB12010"
                     /db_xref="GOA:O31443"
                     /db_xref="InterPro:IPR000182"
                     /db_xref="InterPro:IPR000835"
                     /db_xref="InterPro:IPR016181"
                     /db_xref="InterPro:IPR036388"
                     /db_xref="InterPro:IPR036390"
                     /db_xref="SubtiList:BG12732"
                     /db_xref="UniProtKB/Swiss-Prot:O31443"
                     /translation="MKTRESSVGLKFRKFNRFYTNVLGFLNEHIYDSPFSLTETRILF
                     EIYNTPNCTAKALQDKLGLDRGYVSRIVKQFEKEDLIYKQRSKDDARHHYIFVTETGK
                     TIYKKLEEKANEQVELMLKVINQKEQHKLAEAMAEIEAILSQSLSARASEISIRDYFL
                     SEDLQLLIEKQRQFYAEAHGWDDTFLAYLQETFDADIEKIWIAESGGKFAGSVGLVKH
                     DEKTVQLRWFLVDADFRGRGLGTQLLEHLVAYCQDMKFDRIFLWTVSTMAEARPLYKK
                     FGFRISEVKQEAPLWGQQLTEERWDLELS*"
                     /label="ybfA CDS"
     gene            217532..218449
                     /gene="ybfA"
                     /locus_tag="BSU_02160"
                     /old_locus_tag="BSU02160"
                     /label="ybfA gene"
     CDS             218446..219696
                     /gene="ybfB"
                     /locus_tag="BSU_02170"
                     /old_locus_tag="BSU02170"
                     /function="16.1: Circulate"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 15849754, 16850406;
                     Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="putative carboxylate transporter"
                     /protein_id="NP_388099.1"
                     /db_xref="EnsemblGenomes-Gn:BSU02170"
                     /db_xref="EnsemblGenomes-Tr:CAB12011"
                     /db_xref="GOA:O31444"
                     /db_xref="InterPro:IPR011701"
                     /db_xref="InterPro:IPR020846"
                     /db_xref="InterPro:IPR036259"
                     /db_xref="SubtiList:BG12733"
                     /db_xref="UniProtKB/Swiss-Prot:O31444"
                     /translation="MKRLHYAWIIVSVTFLILLAVQGVRLSFGAFVEPWERQFSIDRS
                     TISLISTVSFIVYGISQPVIGRLVDKWGARAVLAWSALLTGVSIFLTYLVTSPWQLFL
                     LYGLGVSLGVGGASNVAASVLVVNWFSKKRGLAFGIMEAGFGAGQMLLVPGSLMLIHW
                     FSWKLTVVVLGLLLIVIVFPAALLMLRNNPSEKNTEPIGGLAASEKETAPKTTALSVA
                     GMFRMRQFWFLIFPFLICGFTTVGLMDTHLIPFSHDHGFSTTVTSAAVSLLAGFNIAG
                     ILLSGIVADRWSSRKILCILYAVRALSIVILIYSHEPYLLLAFAILFGLVDFATVAPT
                     QMLATQYFQNYSIGLMIGWLSLAHQIGSALGAYVPGVIYTVTGEYTLAFYLSIGMLVL
                     ASVMNVMLREPAAVTRDSAAVVDK*"
                     /label="ybfB CDS"
     gene            218446..219696
                     /gene="ybfB"
                     /locus_tag="BSU_02170"
                     /old_locus_tag="BSU02170"
                     /label="ybfB gene"
     downshifts      219686
                     /Source="Nicolas_upshifts"
                     /id="D82"
                     /incds=0
                     /nref=57
                     /ntot=187
                     /MaxReadThrough="1.17226"
                     /MaxDrop="5.55429"
                     /score="12.1347284"
                     /energy="-9.5"
                     /TU="NA"
                     /idTUdmin="U151"
                     /TUdmin=0
                     /isTUend="TRUE"
                     /label="downshifts"
     CDS             complement(219731..220015)
                     /gene="ybfEc"
                     /locus_tag="BSU_02180"
                     /old_locus_tag="BSU02180"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="conserved protein of unknown function
                     (C-terminal end)"
                     /db_xref="EnsemblGenomes-Gn:BSU02180"
                     /db_xref="EnsemblGenomes-Tr:CAB12012"
                     /db_xref="GOA:O31445"
                     /db_xref="PSEUDO:CAB12012.2"
                     /db_xref="SubtiList:BG12734"
                     /db_xref="UniProtKB/Swiss-Prot:O31445"
                     /translation="MNHCLHSNTLAKIVCTVTLITLYFYFFSTRFNELIELAVQMFFA
                     LIGLFWVFIVSPFSRKVQISERFKQKSENARIVGMIDFVLEQKYKKSISE*"
                     /label="ybfEc CDS"
     gene            complement(219731..220015)
                     /gene="ybfEc"
                     /locus_tag="BSU_02180"
                     /old_locus_tag="BSU02180"
                     /pseudo
                     /label="ybfEc gene"
     downshifts      complement(219784)
                     /Source="Nicolas_upshifts"
                     /id="D83"
                     /incds=0
                     /nref=4
                     /ntot=189
                     /MaxReadThrough="2.49989"
                     /MaxDrop="3.7302"
                     /score="13.7144473"
                     /energy="-12.6"
                     /TU="U153"
                     /idTUdmin="U153"
                     /TUdmin="-22"
                     /isTUend="TRUE"
                     /label="downshifts"
     CDS             complement(219921..220043)
                     /gene="ybfEn"
                     /locus_tag="BSU_02181"
                     /old_locus_tag="BSU02181"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="conserved protein of unknown function YbfE
                     (N-terminal fragment)"
                     /db_xref="PSEUDO:SOX90538.1"
                     /translation="MLNQLKVFFSEPLLTFKHTCQNRMYCDINNVILLFFQHSF*"
                     /label="ybfEn CDS"
     gene            complement(219921..220043)
                     /gene="ybfEn"
                     /locus_tag="BSU_02181"
                     /old_locus_tag="BSU02181"
                     /pseudo
                     /label="ybfEn gene"
     S_feature       complement(220016..220136)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_238449_238569_c"
                     /HighExp="Lbexp, dia0, LBGexp, G150, Mt0, H2O2, dia5,
                     M0t45, G135, HPh"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigEF, Sig-"
                     /TUshortPSig="0.899, 0"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S84"
     promotor_-10    complement(220121..220139)
                     /Source="Nicolas_upshift_promotors"
                     /id="U152"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.899100899100899"
                     /psig="0.899100899100899"
                     /xcortree=1463
                     /SigmaFactorBS="tactaagaaatactcaatttttatactttaagagaTGTATAt
                     attgaatgtagaccaCCATACATATAAAGAAACAgaaacagcaactttattttagaac
                     a"
                     /listShort="S84, ybfE"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(220136)
                     /Source="Nicolas_upshifts"
                     /id="U152"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.899100899100899"
                     /psig="0.899100899100899"
                     /xcortree=1463
                     /SigmaFactorBS="tactaagaaatactcaatttttatactttaagagaTGTATAt
                     attgaatgtagaccaCCATACATATAAAGAAACAgaaacagcaactttattttagaac
                     a"
                     /listShort="S84, ybfE"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     S_feature       complement(220138..220210)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_238571_238643_c"
                     /HighExp="Lbexp, dia0, LBGexp, HPh, G150, H2O2, dia5, Mt0,
                     M0t45, G180"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="Sig-"
                     /TUshortPSig=0
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S85"
     promotor_-35    complement(220156..220161)
                     /Source="Nicolas_upshift_promotors"
                     /id="U152"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.899100899100899"
                     /psig="0.899100899100899"
                     /xcortree=1463
                     /SigmaFactorBS="tactaagaaatactcaatttttatactttaagagaTGTATAt
                     attgaatgtagaccaCCATACATATAAAGAAACAgaaacagcaactttattttagaac
                     a"
                     /listShort="S84, ybfE"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             complement(220211..221122)
                     /gene="ybfF"
                     /locus_tag="BSU_02190"
                     /old_locus_tag="BSU02190"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved protein of unknown function"
                     /protein_id="NP_388101.1"
                     /db_xref="EnsemblGenomes-Gn:BSU02190"
                     /db_xref="EnsemblGenomes-Tr:CAB12013"
                     /db_xref="GOA:O31446"
                     /db_xref="SubtiList:BG12735"
                     /db_xref="UniProtKB/Swiss-Prot:O31446"
                     /translation="MKNDQIVFEKTKNIAHDINQMQNQQEIIDYLFRQDSLTLNQLKH
                     YYSEPSLPLQFLVKVAVLCMFISMTLASFLFIQAKEVFTNTILSDISPAVFSIFTVIC
                     IFMTYTKIIKKGNKNKGKASLNQRSEFYEKNKLINTILYKKYKMDQQNIQANKHTASD
                     NEDSMNFSAVLNHVLTISKNDKELLGYLDTRDNAMLSQLKAYFSTRPFSLPHYMSLMF
                     CGSIIVVYATSLFSGQINYIDIPHIFIFLLLIIFLKILIDLIKLLNISRKGQLHTVLH
                     FAQRAEYLRMRGVIDFILTERYNKKIM*"
                     /label="ybfF CDS"
     gene            complement(220211..221122)
                     /gene="ybfF"
                     /locus_tag="BSU_02190"
                     /old_locus_tag="BSU02190"
                     /label="ybfF gene"
     S_feature       complement(221123..221210)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_239556_239643_c"
                     /HighExp="LBGexp, Lbexp, G150, dia5, dia0, G135, Oxctl,
                     H2O2, Mt0, Salt"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="Sig-"
                     /TUshortPSig=0
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S86"
     CDS             complement(221211..223409)
                     /gene="ybfG"
                     /locus_tag="BSU_02200"
                     /old_locus_tag="BSU02200"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative pepdidoglycan binding protein"
                     /protein_id="NP_388102.1"
                     /db_xref="EnsemblGenomes-Gn:BSU02200"
                     /db_xref="EnsemblGenomes-Tr:CAB12014"
                     /db_xref="GOA:O31447"
                     /db_xref="InterPro:IPR002477"
                     /db_xref="InterPro:IPR015020"
                     /db_xref="InterPro:IPR017853"
                     /db_xref="InterPro:IPR036365"
                     /db_xref="InterPro:IPR036366"
                     /db_xref="SubtiList:BG12736"
                     /db_xref="UniProtKB/Swiss-Prot:O31447"
                     /translation="MVDEMVLITQQWLNDTYSGKHGYNPVEESGKTGWDTIYGLTRAL
                     QIELGISEPADNFGPTTQRLFKPLKRQAPDSKPSNMNFILQGALWCKGFNPGGFTGVF
                     YEKTENAVKEFQKAAGLTTQDGIVTTLIMKALLDMSAFKLVSGGDSRIRQIQQNLNRD
                     YNDYIGLMPCDGLYGRDTNKALIYALQKEEGMSTSVANGFFGNGTTSLCPTLTPGDSR
                     TGFVLIVQYALYCNGKSFDPGEFDGKYGVGVVSAVKAFQEFMCLPQTGYADMPTIKAL
                     LSSSGDTTRTASACDTATIITAEKAQTLRNNGYKTVGRYLTGNVRTSSGLTSKALTSK
                     ELAVILDAGLKVFPIYQDGGYESSYFVKDQGTRDAYSAASAARRLGFPSGTTIYFAVD
                     FDAYDYEVTDKIIPYFQEIKSAFTKMQTFSTAPKYEIGVYGPRNICIRTSEAGLTKYS
                     FVANMSTGFSGNLGYPMPNNWAFDQFYEGTIGSGSGSIGIDKDGYSGRDSGASNVNPP
                     SDPVYDARLRTLTDILSTIPALENLTSLANAMFEFDTTETIFTSPELDIILSTSLLAT
                     IPSEGSPNTITITNGKPGAYITGLLGDTQTSLTASQIDSYQNLLNSLSLSVRNGYLEV
                     YVNPTAESLNIQIKIYTPDIPVGDNVTTGLTTTITFKIKTYKGVPVTSPESELALDWP
                     SYDQYLFPVVGVAALLLIGNMGSDLTNNKGVKVATALSAMLLAIFAYYTS*"
                     /label="ybfG CDS"
     gene            complement(221211..223409)
                     /gene="ybfG"
                     /locus_tag="BSU_02200"
                     /old_locus_tag="BSU02200"
                     /label="ybfG gene"
     misc_feature    complement(223444..223462)
                     /Source="Nicolas_upshift_promotors"
                     /id="U153"
                     /multdbtbs="-"
                     /comp="M12"
                     /sig="Sig-"
                     /pcomp=1
                     /psig=0
                     /xcortree=1523
                     /SigmaFactorBS="ctgttggagaacggatgtaaaatggatgcttaacggcatcca
                     tttttttattttGTCCTACGTTTGCCACCTAtaaatgaacgcaatctaacaaaggagg
                     a"
                     /listShort="ybfG, S86, ybfF, S85, S84, ybfE"
                     /GFF_Attribute="listLong"
                     /label="promotor_single_box"
                     /note="Geneious type: promotor_single_box"
     upshifts        complement(223456)
                     /Source="Nicolas_upshifts"
                     /id="U153"
                     /multdbtbs="-"
                     /comp="M12"
                     /sig="Sig-"
                     /pcomp=1
                     /psig=0
                     /xcortree=1523
                     /SigmaFactorBS="ctgttggagaacggatgtaaaatggatgcttaacggcatcca
                     tttttttattttGTCCTACGTTTGCCACCTAtaaatgaacgcaatctaacaaaggagg
                     a"
                     /listShort="ybfG, S86, ybfF, S85, S84, ybfE"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             complement(223484..224404)
                     /gene="ybfH"
                     /locus_tag="BSU_02210"
                     /old_locus_tag="BSU02210"
                     /function="16.1: Circulate"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 15849754, 16850406;
                     Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="putative permease"
                     /protein_id="NP_388103.1"
                     /db_xref="EnsemblGenomes-Gn:BSU02210"
                     /db_xref="EnsemblGenomes-Tr:CAB12015"
                     /db_xref="GOA:O31448"
                     /db_xref="InterPro:IPR000620"
                     /db_xref="SubtiList:BG12737"
                     /db_xref="UniProtKB/Swiss-Prot:O31448"
                     /translation="MNIQRETSGHIAAIVTILIWGTTFISTKVLLADFSPMEILFYRF
                     LMGFIALILVRPNMIPFRNWRQELLFAGAGLFGVTLYFLLENIALTYTYASNVGMIVS
                     IIPMITAVLAHFLLEGEKLRLTFLIGFISALIGLLLITFNGNVVLRLNPLGDIMAAGA
                     ALVFGGYSIFMKKLSAYEYHIIELTQRVFLYGLLFMVPALFLFDFHFDLSRFSSASNI
                     LNMLFLGIGASALCFATWNYSVGVLGAVKSSAYIYMVPVITIAASVLILHENMTWIAL
                     LGGALTLLGLYISELKPKAKLLENGCKMDA*"
                     /label="ybfH CDS"
     gene            complement(223484..224404)
                     /gene="ybfH"
                     /locus_tag="BSU_02210"
                     /old_locus_tag="BSU02210"
                     /label="ybfH gene"
     CDS             complement(224401..225228)
                     /gene="ybfI"
                     /locus_tag="BSU_02220"
                     /old_locus_tag="BSU02220"
                     /function="16.3: Control"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; Product type r: regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="putative transcriptional regulator (AraC/XylS
                     family, cupin family)"
                     /protein_id="NP_388104.1"
                     /db_xref="EnsemblGenomes-Gn:BSU02220"
                     /db_xref="EnsemblGenomes-Tr:CAB12016"
                     /db_xref="GOA:O31449"
                     /db_xref="InterPro:IPR003313"
                     /db_xref="InterPro:IPR009057"
                     /db_xref="InterPro:IPR018060"
                     /db_xref="SubtiList:BG12738"
                     /db_xref="UniProtKB/Swiss-Prot:O31449"
                     /translation="MQNETRTLQLDPHLHIEAYRFKGIMQKFPNHFHDYYVIGFIEKG
                     QRYLACQDQEYIINPGDLLLFNPRDTHSCEQIDGRTLDYRCINVMPDIMEKAVKEITG
                     SGHLPYFSQHVLFRHELTASLQELHILISEEKQALRKEELFLHLLEELIRHYSDVTFL
                     SSVPEPSDEVKMVCEFLEEHYAENVTLNDLSELTGWSKYHLLRSFTKQKGITPNSYME
                     TIRINQAKKLLEQGVRPIDAAFQTGFSDQSHMTKFFKRQVGLTPKQYMKIFEKELHR*
                     "
                     /label="ybfI CDS"
     gene            complement(224401..225228)
                     /gene="ybfI"
                     /locus_tag="BSU_02220"
                     /old_locus_tag="BSU02220"
                     /label="ybfI gene"
     misc_feature    complement(225255..225274)
                     /Source="Nicolas_upshift_promotors"
                     /id="U154"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.992007992007992"
                     /psig="0.999000999001"
                     /xcortree=583
                     /SigmaFactorBS="ctttctctattcctaaacagcaacatcatacaagaaatcccc
                     caaaatCATGCTACACTTAATCCAAGaccaccacaccgacaggaggcatcccatgcaa
                     a"
                     /listShort="ybfI"
                     /GFF_Attribute="listLong"
                     /label="promotor_single_box"
                     /note="Geneious type: promotor_single_box"
     upshifts        complement(225262)
                     /Source="Nicolas_upshifts"
                     /id="U154"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.992007992007992"
                     /psig="0.999000999001"
                     /xcortree=583
                     /SigmaFactorBS="ctttctctattcctaaacagcaacatcatacaagaaatcccc
                     caaaatCATGCTACACTTAATCCAAGaccaccacaccgacaggaggcatcccatgcaa
                     a"
                     /listShort="ybfI"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    225402..225405
                     /Source="Nicolas_upshift_promotors"
                     /id="U155"
                     /multdbtbs="SigA"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.767232767232767"
                     /psig="0.999000999001"
                     /xcortree=2313
                     /SigmaFactorBS="tttaaccctcaataataattttatcttttttaataaaAATTt
                     atttttcaaatatTTCAGTTATAATGGTTTGGAacagataggaggggcaaagatgtat
                     c"
                     /listShort="purT"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    225420..225439
                     /Source="Nicolas_upshift_promotors"
                     /id="U155"
                     /multdbtbs="SigA"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.767232767232767"
                     /psig="0.999000999001"
                     /xcortree=2313
                     /SigmaFactorBS="tttaaccctcaataataattttatcttttttaataaaAATTt
                     atttttcaaatatTTCAGTTATAATGGTTTGGAacagataggaggggcaaagatgtat
                     c"
                     /listShort="purT"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        225425
                     /Source="Nicolas_upshifts"
                     /id="U155"
                     /multdbtbs="SigA"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.767232767232767"
                     /psig="0.999000999001"
                     /xcortree=2313
                     /SigmaFactorBS="tttaaccctcaataataattttatcttttttaataaaAATTt
                     atttttcaaatatTTCAGTTATAATGGTTTGGAacagataggaggggcaaagatgtat
                     c"
                     /listShort="purT"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             225459..226613
                     /gene="purT"
                     /locus_tag="BSU_02230"
                     /old_locus_tag="BSU02230"
                     /EC_number="2.1.2.-"
                     /function="16.2: Construct biomass (Anabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:7496533"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 7496533; Product type e :
                     enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylglycinamide formyltransferase 2"
                     /protein_id="NP_388105.1"
                     /db_xref="EnsemblGenomes-Gn:BSU02230"
                     /db_xref="EnsemblGenomes-Tr:CAB12017"
                     /db_xref="GOA:P39771"
                     /db_xref="InterPro:IPR003135"
                     /db_xref="InterPro:IPR005862"
                     /db_xref="InterPro:IPR011054"
                     /db_xref="InterPro:IPR011761"
                     /db_xref="InterPro:IPR013815"
                     /db_xref="InterPro:IPR016185"
                     /db_xref="SubtiList:BG10924"
                     /db_xref="UniProtKB/Swiss-Prot:P39771"
                     /translation="MYQSKKVLLLGSGELGKEVVIEAQRLGVQTVAVDSYEHAPAMQV
                     AHNSYVVDMLDPEQIRTIIEKENPDLIVPEVEAIATDELLKLEEEGFHVIPNARAAKL
                     TMDREGIRRLAAETLGLATAGYEFANTYDEFIQAAAQIGFPCVVKPLMSSSGKGQSVC
                     RSEADLESCWETAMEGGRVKNGRVIVEEFIPFESEITLLTVRAVNGTAFCEPIGHVQK
                     DGDYIESWQPHDMTEQQIEEAKHIAKTITDELGGYGLFGVELFLAKDRVYFSEVSPRP
                     HDTGLVTLVTQNLSEFALHVRAILGFPITEITQLSPGASRPLKAPEELADYTVEGLEN
                     ALAVPKTQVRVFGKPITKAGRRMAVALSAADSVETARENAKKALDQLILK*"
                     /label="purT CDS"
     gene            225459..226613
                     /gene="purT"
                     /locus_tag="BSU_02230"
                     /old_locus_tag="BSU02230"
                     /label="purT gene"
     downshifts      226594
                     /Source="Nicolas_upshifts"
                     /id="D84"
                     /incds=0
                     /nref=100
                     /ntot=189
                     /MaxReadThrough="2.6996"
                     /MaxDrop="5.22319"
                     /score="39.2561117"
                     /energy="-15.1"
                     /TU="NA"
                     /idTUdmin="U155"
                     /TUdmin=0
                     /isTUend="TRUE"
                     /label="downshifts"
     promotor_-35    226674..226679
                     /Source="Nicolas_upshift_promotors"
                     /id="U156"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.973026973026973"
                     /psig="0.973026973026973"
                     /xcortree=1104
                     /SigmaFactorBS="ttgtcatgggacaaggcctgtttttttctttctccgtaaaag
                     ttttATCATAagaatcagaaacctGATTATAATGTAAAAGTCTtccatcgatacgggt
                     g"
                     /listShort="mpr, ybfJ"
                     /listLong="S87, ybfK, S88, pssA, ybfM, psd"
                     /label="promotor_-35"
     upshifts        226688
                     /Source="Nicolas_upshifts"
                     /id="U156"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.973026973026973"
                     /psig="0.973026973026973"
                     /xcortree=1104
                     /SigmaFactorBS="ttgtcatgggacaaggcctgtttttttctttctccgtaaaag
                     ttttATCATAagaatcagaaacctGATTATAATGTAAAAGTCTtccatcgatacgggt
                     g"
                     /listShort="mpr, ybfJ"
                     /listLong="S87, ybfK, S88, pssA, ybfM, psd"
                     /label="upshifts"
     promotor_-10    226694..226712
                     /Source="Nicolas_upshift_promotors"
                     /id="U156"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.973026973026973"
                     /psig="0.973026973026973"
                     /xcortree=1104
                     /SigmaFactorBS="ttgtcatgggacaaggcctgtttttttctttctccgtaaaag
                     ttttATCATAagaatcagaaacctGATTATAATGTAAAAGTCTtccatcgatacgggt
                     g"
                     /listShort="mpr, ybfJ"
                     /listLong="S87, ybfK, S88, pssA, ybfM, psd"
                     /label="promotor_-10"
     promotor_-35    226728..226735
                     /Source="Nicolas_upshift_promotors"
                     /id="U157"
                     /multdbtbs="-"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp="0.390609390609391"
                     /psig=1
                     /xcortree=760
                     /SigmaFactorBS="acctgattataatgtaaaagtcttccatcgatacgggtGGTT
                     GACActaaaggagggagaTGACAAAATGAAATTAGTTCcaagattcagaaaacaatgg
                     t"
                     /listShort="mpr, ybfJ"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    226750..226769
                     /Source="Nicolas_upshift_promotors"
                     /id="U157"
                     /multdbtbs="-"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp="0.390609390609391"
                     /psig=1
                     /xcortree=760
                     /SigmaFactorBS="acctgattataatgtaaaagtcttccatcgatacgggtGGTT
                     GACActaaaggagggagaTGACAAAATGAAATTAGTTCcaagattcagaaaacaatgg
                     t"
                     /listShort="mpr, ybfJ"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        226750
                     /Source="Nicolas_upshifts"
                     /id="U157"
                     /multdbtbs="-"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp="0.390609390609391"
                     /psig=1
                     /xcortree=760
                     /SigmaFactorBS="acctgattataatgtaaaagtcttccatcgatacgggtGGTT
                     GACActaaaggagggagaTGACAAAATGAAATTAGTTCcaagattcagaaaacaatgg
                     t"
                     /listShort="mpr, ybfJ"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             226757..227698
                     /gene="mpr"
                     /locus_tag="BSU_02240"
                     /old_locus_tag="BSU02240"
                     /EC_number="3.4.21.-"
                     /function="16.11: Scavenge (Catabolism)"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 1c: Function from experimental evidences
                     in the studied genus; PubMedId: 15205417, 15375126,
                     21819557, 25666135; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="extracellular glutamyl-endopeptidase"
                     /protein_id="NP_388106.1"
                     /db_xref="EnsemblGenomes-Gn:BSU02240"
                     /db_xref="EnsemblGenomes-Tr:CAB12018"
                     /db_xref="GOA:P39790"
                     /db_xref="InterPro:IPR000126"
                     /db_xref="InterPro:IPR001254"
                     /db_xref="InterPro:IPR008256"
                     /db_xref="InterPro:IPR009003"
                     /db_xref="InterPro:IPR018114"
                     /db_xref="InterPro:IPR028301"
                     /db_xref="SubtiList:BG10690"
                     /db_xref="UniProtKB/Swiss-Prot:P39790"
                     /translation="MKLVPRFRKQWFAYLTVLCLALAAAVSFGVPAKAAENPQTSVSN
                     TGKEADATKNQTSKADQVSAPYEGTGKTSKSLYGGQTELEKNIQTLQPSSIIGTDERT
                     RISSTTSFPYRATVQLSIKYPNTSSTYGCTGFLVNPNTVVTAGHCVYSQDHGWASTIT
                     AAPGRNGSSYPYGTYSGTMFYSVKGWTESKDTNYDYGAIKLNGSPGNTVGWYGYRTTN
                     SSSPVGLSSSVTGFPCDKTFGTMWSDTKPIRSAETYKLTYTTDTYGCQSGSPVYRNYS
                     DTGQTAIAIHTNGGSSYNLGTRVTNDVFNNIQYWANQ*"
                     /label="mpr CDS"
     gene            226757..227698
                     /gene="mpr"
                     /locus_tag="BSU_02240"
                     /old_locus_tag="BSU02240"
                     /label="mpr gene"
     CDS             227661..228059
                     /gene="ybfJ"
                     /locus_tag="BSU_02250"
                     /old_locus_tag="BSU02250"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; Product type lp: lipoprotein"
                     /codon_start=1
                     /transl_table=11
                     /product="putative lipoprotein"
                     /protein_id="NP_388107.1"
                     /db_xref="EnsemblGenomes-Gn:BSU02250"
                     /db_xref="EnsemblGenomes-Tr:CAB12019"
                     /db_xref="InterPro:IPR013783"
                     /db_xref="InterPro:IPR019730"
                     /db_xref="SubtiList:BG12739"
                     /db_xref="UniProtKB/Swiss-Prot:O31451"
                     /translation="MYSTIFNIGQINKYSKLAIFMSILFLCGCSSQTHSSQKETTIPV
                     TLHVEDAKGLPVEGVQVTIVKAPSSDEEPSTEIGEILGKTDKNGDIKWDTGRKGDYSV
                     ALTKGETSVTHHISLTEDKKDHAIPLVFKE*"
                     /label="ybfJ CDS"
     gene            227661..228059
                     /gene="ybfJ"
                     /locus_tag="BSU_02250"
                     /old_locus_tag="BSU02250"
                     /label="ybfJ gene"
     promotor_-10    complement(227753..227767)
                     /Source="Nicolas_upshift_promotors"
                     /id="U158"
                     /multdbtbs="-"
                     /comp="M1"
                     /sig="Sig-"
                     /pcomp="0.418581418581419"
                     /psig="0.418581418581419"
                     /xcortree=776
                     /SigmaFactorBS="gcagccccttagcatcctccacatgaagagtgacaGGAATAg
                     tcgtttctttttgaGAAGAATGCGTCTGCgaactgcacccgcataaaaacaaaataga
                     c"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(227763)
                     /Source="Nicolas_upshifts"
                     /id="U158"
                     /multdbtbs="-"
                     /comp="M1"
                     /sig="Sig-"
                     /pcomp="0.418581418581419"
                     /psig="0.418581418581419"
                     /xcortree=776
                     /SigmaFactorBS="gcagccccttagcatcctccacatgaagagtgacaGGAATAg
                     tcgtttctttttgaGAAGAATGCGTCTGCgaactgcacccgcataaaaacaaaataga
                     c"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(227783..227788)
                     /Source="Nicolas_upshift_promotors"
                     /id="U158"
                     /multdbtbs="-"
                     /comp="M1"
                     /sig="Sig-"
                     /pcomp="0.418581418581419"
                     /psig="0.418581418581419"
                     /xcortree=776
                     /SigmaFactorBS="gcagccccttagcatcctccacatgaagagtgacaGGAATAg
                     tcgtttctttttgaGAAGAATGCGTCTGCgaactgcacccgcataaaaacaaaataga
                     c"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     downshifts      228046
                     /Source="Nicolas_upshifts"
                     /id="D85"
                     /incds=0
                     /nref=19
                     /ntot=51
                     /MaxReadThrough="3.50775"
                     /MaxDrop="5.06025"
                     /score="29.4582027"
                     /energy="-15.4"
                     /TU="U156"
                     /idTUdmin="U157"
                     /TUdmin=0
                     /isTUend="TRUE"
                     /label="downshifts"
     promotor_-35    228115..228122
                     /Source="Nicolas_upshift_promotors"
                     /id="U159"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.833166833166833"
                     /psig=1
                     /xcortree=2185
                     /SigmaFactorBS="ttttatttattgcaggaaaccaaacTATATACTggaaattta
                     ttatgTGAGATAATAAGAAATAGGTattttttcttacgagacaaaaggggcgttatcc
                     t"
                     /listShort="S87, ybfK, S88, pssA, ybfM, psd"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    228137..228156
                     /Source="Nicolas_upshift_promotors"
                     /id="U159"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.833166833166833"
                     /psig=1
                     /xcortree=2185
                     /SigmaFactorBS="ttttatttattgcaggaaaccaaacTATATACTggaaattta
                     ttatgTGAGATAATAAGAAATAGGTattttttcttacgagacaaaaggggcgttatcc
                     t"
                     /listShort="S87, ybfK, S88, pssA, ybfM, psd"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     S_feature       228150..228224
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_246583_246657"
                     /HighExp="Cold, LoTm, S0, aero, ferm, T-4.40H, nit,
                     T-5.40H, T-0.40H, Paraq"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig=1
                     /TUlongSig="SigEF"
                     /TUlongPSig="0.973"
                     /label="S87"
     upshifts        228150
                     /Source="Nicolas_upshifts"
                     /id="U159"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.833166833166833"
                     /psig=1
                     /xcortree=2185
                     /SigmaFactorBS="ttttatttattgcaggaaaccaaacTATATACTggaaattta
                     ttatgTGAGATAATAAGAAATAGGTattttttcttacgagacaaaaggggcgttatcc
                     t"
                     /listShort="S87, ybfK, S88, pssA, ybfM, psd"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             228225..229115
                     /gene="cesB"
                     /locus_tag="BSU_02260"
                     /old_locus_tag="BSU02260"
                     /EC_number="3.1.1.1"
                     /function="16.11: Scavenge (Catabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:11389736, 24418394"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 11389736, 24418394;
                     Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="enantioselective carboxylesterase"
                     /protein_id="NP_388108.1"
                     /db_xref="EnsemblGenomes-Gn:BSU02260"
                     /db_xref="EnsemblGenomes-Tr:CAB12020"
                     /db_xref="GOA:O31452"
                     /db_xref="InterPro:IPR000073"
                     /db_xref="InterPro:IPR029058"
                     /db_xref="PDB:4CCY"
                     /db_xref="SubtiList:BG12740"
                     /db_xref="UniProtKB/Swiss-Prot:O31452"
                     /translation="MIQDSMQFAAVESGLRFYQAYDQSLSLWPIESEAFYVSTRFGKT
                     HIIASGPKDAPSLILLHGGLFSSAMWYPNIAAWSSQFRTYAVDIIGDKNKSIPSAAME
                     TRADFAEWMKDVFDSLGLETAHLAGLSLGGSHIVNFLLRAPERVERAVVISPAEAFIS
                     FHPDVYKYAAELTGARGAESYIKWITGDSYDLHPLLQRQIVAGVEWQDEQRSLKPTEN
                     GFPYVFTDQELKSIQVPVLLMFGEHEAMYHQQMAFERASVLVPGIQAEIVKNAGHLLS
                     LEQPEYVNQRVLSFLCGGIK*"
                     /label="cesB CDS"
     gene            228225..229115
                     /gene="cesB"
                     /locus_tag="BSU_02260"
                     /old_locus_tag="BSU02260"
                     /label="cesB gene"
     promotor_-35    228459..228466
                     /Source="Nicolas_upshift_promotors"
                     /id="U160"
                     /multdbtbs="-"
                     /comp="M10"
                     /sig="SigD"
                     /pcomp="0.867132867132867"
                     /psig="0.867132867132867"
                     /xcortree=2736
                     /SigmaFactorBS="ttttcagctctgcgatgtggtatccgaatatcgcagcgtgga
                     gcAGTCAATTtcgtacatatgcgGTCGATATAATAGGAGACAaaaataaaagtatacc
                     a"
                     /listShort="S88, pssA, ybfM, psd"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     upshifts        228475
                     /Source="Nicolas_upshifts"
                     /id="U160"
                     /multdbtbs="-"
                     /comp="M10"
                     /sig="SigD"
                     /pcomp="0.867132867132867"
                     /psig="0.867132867132867"
                     /xcortree=2736
                     /SigmaFactorBS="ttttcagctctgcgatgtggtatccgaatatcgcagcgtgga
                     gcAGTCAATTtcgtacatatgcgGTCGATATAATAGGAGACAaaaataaaagtatacc
                     a"
                     /listShort="S88, pssA, ybfM, psd"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-10    228480..228498
                     /Source="Nicolas_upshift_promotors"
                     /id="U160"
                     /multdbtbs="-"
                     /comp="M10"
                     /sig="SigD"
                     /pcomp="0.867132867132867"
                     /psig="0.867132867132867"
                     /xcortree=2736
                     /SigmaFactorBS="ttttcagctctgcgatgtggtatccgaatatcgcagcgtgga
                     gcAGTCAATTtcgtacatatgcgGTCGATATAATAGGAGACAaaaataaaagtatacc
                     a"
                     /listShort="S88, pssA, ybfM, psd"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     S_feature       229116..229310
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_247549_247743"
                     /HighExp="Cold, LBGstat, Paraq, Oxctl, H2O2, dia15, G135,
                     Diami, Lbexp, LBGexp"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigD, SigA"
                     /TUshortPSig="0.867, 1"
                     /TUlongSig="SigEF"
                     /TUlongPSig="0.973"
                     /label="S88"
     CDS             229311..229844
                     /gene="pssA"
                     /locus_tag="BSU_02270"
                     /old_locus_tag="BSU02270"
                     /EC_number="2.7.8.8"
                     /function="16.13: Shape"
                     /function="16.2: Construct biomass (Anabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:12682299, 14762009, 15743965, 15849754, 16850406"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 12682299, 14762009,
                     15743965, 15849754, 16850406; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatidylserine synthase"
                     /protein_id="NP_388109.1"
                     /db_xref="EnsemblGenomes-Gn:BSU02270"
                     /db_xref="EnsemblGenomes-Tr:CAB12021"
                     /db_xref="GOA:P39823"
                     /db_xref="InterPro:IPR000462"
                     /db_xref="InterPro:IPR004533"
                     /db_xref="SubtiList:BG11012"
                     /db_xref="UniProtKB/Swiss-Prot:P39823"
                     /translation="MNYIPCMITIGNFICGLLAIHSLLYHNIHSAVLFIFTGMFLDFF
                     DGMAARKLNAVSDMGRELDSFADLVTFGVAPSMLAYSVALYTLPFIGILCALTYSICG
                     MLRLSKFNIEQSKLPTFIGMPIPFAGMCLVILSFTYNPILLAIGTCGLSYLMVSKIKF
                     PHFKKHAAENLESGRWN*"
                     /label="pssA CDS"
     gene            229311..229844
                     /gene="pssA"
                     /locus_tag="BSU_02270"
                     /old_locus_tag="BSU02270"
                     /label="pssA gene"
     CDS             229835..230323
                     /gene="ybfM"
                     /locus_tag="BSU_02280"
                     /old_locus_tag="BSU02280"
                     /function="16.8: Protect"
                     /function="16.6: Maintain"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 12682299, 14762009,
                     15849754, 16850406; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative membrane phosphatase"
                     /protein_id="NP_388110.1"
                     /db_xref="EnsemblGenomes-Gn:BSU02280"
                     /db_xref="EnsemblGenomes-Tr:CAB12022"
                     /db_xref="GOA:O31453"
                     /db_xref="InterPro:IPR032816"
                     /db_xref="SubtiList:BG12741"
                     /db_xref="UniProtKB/Swiss-Prot:O31453"
                     /translation="MELVQQLIADYGYLAIFLMLVLGIVGLPIPDEVMMTVVGYFTHT
                     DVLNYELSILISFVGALLGMLISYMIGRKAGRPFIDKYGKWVGLKEKRMMKVEKWMKK
                     YGPYSLILGYFIPGVRHVTCYFSGIGKMDLKTYVAFAAIGAFLWCFVFITIGRVIGII
                     HV*"
                     /label="ybfM CDS"
     gene            229835..230323
                     /gene="ybfM"
                     /locus_tag="BSU_02280"
                     /old_locus_tag="BSU02280"
                     /label="ybfM gene"
     CDS             230316..231107
                     /gene="psd"
                     /locus_tag="BSU_02290"
                     /old_locus_tag="BSU02290"
                     /EC_number="4.1.1.65"
                     /function="16.2: Construct biomass (Anabolism)"
                     /function="16.13: Shape"
                     /experiment="publication(s) with functional evidences,
                     PMID:12682299, 14762009, 9422599"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 12682299, 14762009,
                     9422599; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatidylserine decarboxylase; 32 kDa
                     precursor processed into a 29 kDa protein"
                     /protein_id="NP_388111.1"
                     /db_xref="EnsemblGenomes-Gn:BSU02290"
                     /db_xref="EnsemblGenomes-Tr:CAB12023"
                     /db_xref="GOA:P39822"
                     /db_xref="InterPro:IPR003817"
                     /db_xref="InterPro:IPR033177"
                     /db_xref="InterPro:IPR033178"
                     /db_xref="SubtiList:BG11013"
                     /db_xref="UniProtKB/Swiss-Prot:P39822"
                     /translation="MFNTAVKILYRSLIELTNHRLSSYLIKGFCESKISKPVIPLFSK
                     HFRLNWDDVDGTAADYGSLSELFIRQINLERRPVSKEAHAVVSPVDGVVQTVGIINPN
                     QTFTVKGKDYSFAELTGCKSADHQYNGGYFVVLYLSPRHYHRFHSPISCRYQKLAELG
                     NRSYPVNQLGLKYGKDVLSKNYRFVYELNSGSRNVLMIPVGAMNINSIVQTNTRTELE
                     IGEELGYFSFGSTVILVFEKDAFQPSAHLAEGQEVQVGELIGYEE*"
                     /label="psd CDS"
     gene            230316..231107
                     /gene="psd"
                     /locus_tag="BSU_02290"
                     /old_locus_tag="BSU02290"
                     /label="psd gene"
     downshifts      231082
                     /Source="Nicolas_upshifts"
                     /id="D86"
                     /incds=0
                     /nref=101
                     /ntot=236
                     /MaxReadThrough="3.18138"
                     /MaxDrop="4.25536"
                     /score="-2.98360164"
                     /energy="-8"
                     /TU="U159"
                     /idTUdmin="U160"
                     /TUdmin=0
                     /isTUend="TRUE"
                     /label="downshifts"
     CDS             231162..231440
                     /gene="ybfN"
                     /locus_tag="BSU_02300"
                     /old_locus_tag="BSU02300"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved protein of unknown function"
                     /protein_id="NP_388112.1"
                     /db_xref="EnsemblGenomes-Gn:BSU02300"
                     /db_xref="EnsemblGenomes-Tr:CAB12024"
                     /db_xref="SubtiList:BG12742"
                     /db_xref="UniProtKB/Swiss-Prot:O31454"
                     /translation="MEKQIISWITDYQNTGDEAVLRQVREVCWPIVEAVLQEKVMDDE
                     QANNLREKGIERFPFIISKYQADVQLPVETFLQNTYRFYFHQVMRESS*"
                     /label="ybfN CDS"
     gene            231162..231440
                     /gene="ybfN"
                     /locus_tag="BSU_02300"
                     /old_locus_tag="BSU02300"
                     /label="ybfN gene"
     promotor_-35    231483..231492
                     /Source="Nicolas_upshift_promotors"
                     /id="U161"
                     /multdbtbs="SigW"
                     /comp="M9"
                     /sig="SigWXY"
                     /pcomp=1
                     /psig=1
                     /xcortree=1688
                     /SigmaFactorBS="agcttctttcaacagagaagcttttttttgttggcaggaaaa
                     GGAAACTTTTtctatatctatcTCGTAATGACTAGAGAacctagcagaaaaggagaga
                     t"
                     /listShort="ybfO, ybfP, S89, ybfQ"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     upshifts        231501
                     /Source="Nicolas_upshifts"
                     /id="U161"
                     /multdbtbs="SigW"
                     /comp="M9"
                     /sig="SigWXY"
                     /pcomp=1
                     /psig=1
                     /xcortree=1688
                     /SigmaFactorBS="agcttctttcaacagagaagcttttttttgttggcaggaaaa
                     GGAAACTTTTtctatatctatcTCGTAATGACTAGAGAacctagcagaaaaggagaga
                     t"
                     /listShort="ybfO, ybfP, S89, ybfQ"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-10    231505..231520
                     /Source="Nicolas_upshift_promotors"
                     /id="U161"
                     /multdbtbs="SigW"
                     /comp="M9"
                     /sig="SigWXY"
                     /pcomp=1
                     /psig=1
                     /xcortree=1688
                     /SigmaFactorBS="agcttctttcaacagagaagcttttttttgttggcaggaaaa
                     GGAAACTTTTtctatatctatcTCGTAATGACTAGAGAacctagcagaaaaggagaga
                     t"
                     /listShort="ybfO, ybfP, S89, ybfQ"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     CDS             231546..232886
                     /gene="ybfO"
                     /locus_tag="BSU_02310"
                     /old_locus_tag="BSU02310"
                     /EC_number="3.-.-.-"
                     /function="16.8: Protect"
                     /function="16.11: Scavenge (Catabolism)"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative exported hydrolase"
                     /protein_id="NP_388113.1"
                     /db_xref="EnsemblGenomes-Gn:BSU02310"
                     /db_xref="EnsemblGenomes-Tr:CAB12025"
                     /db_xref="GOA:O31455"
                     /db_xref="InterPro:IPR007815"
                     /db_xref="SubtiList:BG12743"
                     /db_xref="UniProtKB/Swiss-Prot:O31455"
                     /translation="MKRMIVRMTLPLLIVCLAFSSFSASARAASEEKYWDHWIERHAQ
                     PLDASNASNKDLRFLKKVLKGKRIVQLGETTHGAGEINATKVRMIKYLHEELGYDVLA
                     FESGFPDTNASYLNMDQLTPKSTMKNSIYAVWHTEDVVELFDYMKEQKEKGDPLILTG
                     FDIQSMKNSFNVAATQWVKAVDPEKAELLSQSENDFSTLVTDSNTFDEFSQKKEKLVK
                     NYQKLIKFTKTHASELKENLPKEPKAYEMFMHSLQLRIDVMETYMLEEMKEKLEEYPE
                     NIEDFSFFMRDRMMAEQFQWVADTLYPKKKIIVWGHNYHLRKQNTKMIKDWVQLNGPN
                     MGDYLPERLKKQTYTIGIYAYSGASLDSSDNKTVKPVTSPPPSGSLEALLKAADRPAV
                     FVDFLHTKNKKGTSWMYTPRTALYWGYMEEQMILKEQYDGVIWLEHITPSVIIK*"
                     /label="ybfO CDS"
     gene            231546..232886
                     /gene="ybfO"
                     /locus_tag="BSU_02310"
                     /old_locus_tag="BSU02310"
                     /label="ybfO gene"
     downshifts      232886
                     /Source="Nicolas_upshifts"
                     /id="D87"
                     /incds=0
                     /nref=12
                     /ntot=60
                     /MaxReadThrough="3.64301"
                     /MaxDrop="6.34998"
                     /score="14.4442651"
                     /energy="-13.3"
                     /TU="U161"
                     /idTUdmin="U162"
                     /TUdmin="-1122"
                     /isTUend="FALSE"
                     /label="downshifts"
     upshifts        232952
                     /Source="Nicolas_upshifts"
                     /id="U162"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.582417582417582"
                     /psig="0.838161838161838"
                     /xcortree=1579
                     /SigmaFactorBS="gtcccctgtggtaaacaggggatttttacatatcgcaaaaat
                     aatcaaaacatataatccgtgATCCATTATTCTAAAACAGAaaggagattggagcgtg
                     c"
                     /listShort="ybfP, S89"
                     /listLong="ybfQ"
                     /label="upshifts"
     misc_feature    232955..232974
                     /Source="Nicolas_upshift_promotors"
                     /id="U162"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.582417582417582"
                     /psig="0.838161838161838"
                     /xcortree=1579
                     /SigmaFactorBS="gtcccctgtggtaaacaggggatttttacatatcgcaaaaat
                     aatcaaaacatataatccgtgATCCATTATTCTAAAACAGAaaggagattggagcgtg
                     c"
                     /listShort="ybfP, S89"
                     /listLong="ybfQ"
                     /label="promotor_single_box"
                     /note="Geneious type: promotor_single_box"
     CDS             232994..233881
                     /gene="ybfP"
                     /locus_tag="BSU_02320"
                     /old_locus_tag="BSU02320"
                     /function="16.3: Control"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; Product type r: regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="putative transcriptional regulator (AraC/XylS
                     family)"
                     /protein_id="NP_388114.1"
                     /db_xref="EnsemblGenomes-Gn:BSU02320"
                     /db_xref="EnsemblGenomes-Tr:CAB12026"
                     /db_xref="GOA:O31456"
                     /db_xref="InterPro:IPR008979"
                     /db_xref="InterPro:IPR009057"
                     /db_xref="InterPro:IPR018060"
                     /db_xref="SubtiList:BG12744"
                     /db_xref="UniProtKB/Swiss-Prot:O31456"
                     /translation="MYYEKAVQKTINWIESHLHEQISNEDIVNVSSFSKFHFHRIFQK
                     EVGMSVASYIRLRRLANAAAALLYTDHRIIDIALYYQFESQEAFTRTFKKMYHMPPGA
                     YRTFMKRFTSKKEESYMEKKMKGWVLSGSHPFQFEMGIDRENVHQGKASGYLKSTMVQ
                     DIGEFATMMQQFKADRYLGKRLRLSSFIKTKGVQHFASLWMRVDSAADDVLQFDNMSN
                     RPITGTTNWNHYAIVLDVPENSAVISFGVQLSGPGQVWMDHVVFEEVDESVPSTNLEM
                     PGELLDEPVNLSFEEELQK*"
                     /label="ybfP CDS"
     gene            232994..233881
                     /gene="ybfP"
                     /locus_tag="BSU_02320"
                     /old_locus_tag="BSU02320"
                     /label="ybfP gene"
     S_feature       233882..234025
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_252315_252458"
                     /HighExp="T0.30H, T-1.40H, T0.0H, T-1.10H, Salt, aero,
                     ferm, T-0.40H, T-2.40H, B60"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA, SigWXY"
                     /TUshortPSig="0.838, 1"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S89"
     promotor_-35    233997..234004
                     /Source="Nicolas_upshift_promotors"
                     /id="U163"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.754245754245754"
                     /psig=1
                     /xcortree=2069
                     /SigmaFactorBS="gcttggatatttttatcagtctgggcggatCTGTTCATcttt
                     gcggcatttTCCTGTATGATATAGTAAGAgtgtgcatagcaactaactataattgaac
                     a"
                     /listShort="ybfQ"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    234018..234037
                     /Source="Nicolas_upshift_promotors"
                     /id="U163"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.754245754245754"
                     /psig=1
                     /xcortree=2069
                     /SigmaFactorBS="gcttggatatttttatcagtctgggcggatCTGTTCATcttt
                     gcggcatttTCCTGTATGATATAGTAAGAgtgtgcatagcaactaactataattgaac
                     a"
                     /listShort="ybfQ"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        234027
                     /Source="Nicolas_upshifts"
                     /id="U163"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.754245754245754"
                     /psig=1
                     /xcortree=2069
                     /SigmaFactorBS="gcttggatatttttatcagtctgggcggatCTGTTCATcttt
                     gcggcatttTCCTGTATGATATAGTAAGAgtgtgcatagcaactaactataattgaac
                     a"
                     /listShort="ybfQ"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             234081..235049
                     /gene="ybfQ"
                     /locus_tag="BSU_02330"
                     /old_locus_tag="BSU02330"
                     /function="16.11: Scavenge (Catabolism)"
                     /function="16.8: Protect"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 10939241, 22720735;
                     Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative enzyme with rhodanese domain"
                     /protein_id="NP_388115.1"
                     /db_xref="EnsemblGenomes-Gn:BSU02330"
                     /db_xref="EnsemblGenomes-Tr:CAB12027"
                     /db_xref="InterPro:IPR001763"
                     /db_xref="InterPro:IPR020936"
                     /db_xref="InterPro:IPR022111"
                     /db_xref="InterPro:IPR036873"
                     /db_xref="SubtiList:BG12745"
                     /db_xref="UniProtKB/Swiss-Prot:O31457"
                     /translation="MEKQYRVLLYYKYVPIEDPEAFREQHLAFCKELGLLGRILVSSE
                     GINGTVSGTVEQTEKYMETMKADPRFADMVFKIDEAEGHAFKKIFVRHKKELVTLRLE
                     DDVDPNETTGQHLKPAEFYEKMQDPNTIVIDARNDYEYDLGHFRGAVRPDIEAFRELP
                     EWIEEHKDMLEGKKILTYCTGGVRCEKFSGWLVKQGFEDVAQLDGGIVTYGKDPEVQG
                     KLWDGQCYVFDERISVPVNRVEHVIVGKDYFTGEPCERYVNCANPSCNKKMICTPENE
                     YKYMRSCSHECRTNPRNLYVKEHNMTEEEVNARLAAIETEDHAAAE*"
                     /label="ybfQ CDS"
     gene            234081..235049
                     /gene="ybfQ"
                     /locus_tag="BSU_02330"
                     /old_locus_tag="BSU02330"
                     /label="ybfQ gene"
     promotor_-10    complement(234903..234921)
                     /Source="Nicolas_upshift_promotors"
                     /id="U164"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.987012987012987"
                     /psig="0.987012987012987"
                     /xcortree=798
                     /SigmaFactorBS="attatgctctttcacatacaggtttcttgggttcgtgcGGCA
                     TTcgtggctgcagctgcGCATATATTTATACTCATTttccggtgtgcatatcattttt
                     t"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(234920)
                     /Source="Nicolas_upshifts"
                     /id="U164"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.987012987012987"
                     /psig="0.987012987012987"
                     /xcortree=798
                     /SigmaFactorBS="attatgctctttcacatacaggtttcttgggttcgtgcGGCA
                     TTcgtggctgcagctgcGCATATATTTATACTCATTttccggtgtgcatatcattttt
                     t"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(234937..234942)
                     /Source="Nicolas_upshift_promotors"
                     /id="U164"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.987012987012987"
                     /psig="0.987012987012987"
                     /xcortree=798
                     /SigmaFactorBS="attatgctctttcacatacaggtttcttgggttcgtgcGGCA
                     TTcgtggctgcagctgcGCATATATTTATACTCATTttccggtgtgcatatcattttt
                     t"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     downshifts      235046
                     /Source="Nicolas_upshifts"
                     /id="D88"
                     /incds=0
                     /nref=238
                     /ntot=271
                     /MaxReadThrough="2.06825"
                     /MaxDrop="7.49655"
                     /score="4.11635522"
                     /energy="-7.8"
                     /TU="U163"
                     /idTUdmin="U161"
                     /TUdmin=4
                     /isTUend="TRUE"
                     /label="downshifts"
     downshifts      complement(235085)
                     /Source="Nicolas_upshifts"
                     /id="D89"
                     /incds=0
                     /nref=59
                     /ntot=147
                     /MaxReadThrough="0.54212"
                     /MaxDrop="6.33244"
                     /score="2.56774646"
                     /energy="-7.5"
                     /TU="NA"
                     /idTUdmin="U165"
                     /TUdmin=11
                     /isTUend="TRUE"
                     /label="downshifts"
     CDS             complement(235085..236329)
                     /gene="gltP"
                     /locus_tag="BSU_02340"
                     /old_locus_tag="BSU02340"
                     /function="16.1: Circulate"
                     /experiment="publication(s) with functional evidences,
                     PMID:7751298, 15849754, 16850406"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 7751298, 15849754,
                     16850406; Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="proton/glutamate symport protein"
                     /protein_id="NP_388116.1"
                     /db_xref="EnsemblGenomes-Gn:BSU02340"
                     /db_xref="EnsemblGenomes-Tr:CAB12028"
                     /db_xref="GOA:P39817"
                     /db_xref="InterPro:IPR001991"
                     /db_xref="InterPro:IPR018107"
                     /db_xref="InterPro:IPR033380"
                     /db_xref="InterPro:IPR036458"
                     /db_xref="SubtiList:BG11015"
                     /db_xref="UniProtKB/Swiss-Prot:P39817"
                     /translation="MKKLIAFQILIALAVGAVIGHFFPDFGMALRPVGDGFIRLIKMI
                     VVPIVFSTIVIGAAGSGSMKKMGSLGIKTIIWFEVITTLVLGLGLLLANVLKPGVGLD
                     LSHLAKKDIHELSGYTDKVVDFKQMILDIIPTNIIDVMARNDLLAVIFFAILFGVAAA
                     GIGKASEPVMKFFESTAQIMFKLTQIVMVTAPIGVLALMAASVGQYGIELLLPMFKLV
                     GTVFLGLFLILFVLFPLVGLIFQIKYFEVLKMIWDLFLIAFSTTSTETILPQLMDRME
                     KYGCPKRVVSFVVPSGLSLNCDGSSLYLSVSCIFLAQAFQVDMTLSQQLLMMLVLVMT
                     SKGIAAVPSGSLVVLLATANAVGLPAEGVAIIAGVDRVMDMARTGVNVPGHAIACIVV
                     SKWEKAFRQKEWVSANSQTESI*"
                     /label="gltP CDS"
     gene            complement(235085..236329)
                     /gene="gltP"
                     /locus_tag="BSU_02340"
                     /old_locus_tag="BSU02340"
                     /label="gltP gene"
     promotor_-10    complement(236363..236381)
                     /Source="Nicolas_upshift_promotors"
                     /id="U165"
                     /multdbtbs="-"
                     /comp="M1"
                     /sig="SigH"
                     /pcomp="0.996003996003996"
                     /psig="0.996003996003996"
                     /xcortree=525
                     /SigmaFactorBS="tgaaagcgctgtcaaaataaaataacttgaaaAAAGGTGTTt
                     gcatttgaaTCACGAATGATATGAATATgcctacattctatcgttctaaagggggatt
                     c"
                     /listShort="gltP"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(236372)
                     /Source="Nicolas_upshifts"
                     /id="U165"
                     /multdbtbs="-"
                     /comp="M1"
                     /sig="SigH"
                     /pcomp="0.996003996003996"
                     /psig="0.996003996003996"
                     /xcortree=525
                     /SigmaFactorBS="tgaaagcgctgtcaaaataaaataacttgaaaAAAGGTGTTt
                     gcatttgaaTCACGAATGATATGAATATgcctacattctatcgttctaaagggggatt
                     c"
                     /listShort="gltP"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(236392..236400)
                     /Source="Nicolas_upshift_promotors"
                     /id="U165"
                     /multdbtbs="-"
                     /comp="M1"
                     /sig="SigH"
                     /pcomp="0.996003996003996"
                     /psig="0.996003996003996"
                     /xcortree=525
                     /SigmaFactorBS="tgaaagcgctgtcaaaataaaataacttgaaaAAAGGTGTTt
                     gcatttgaaTCACGAATGATATGAATATgcctacattctatcgttctaaagggggatt
                     c"
                     /listShort="gltP"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    complement(236400..236418)
                     /Source="Nicolas_upshift_promotors"
                     /id="U166"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.949050949050949"
                     /psig="0.949050949050949"
                     /xcortree=797
                     /SigmaFactorBS="taaaaaagtcccccctgctgcgggggactttttcgccAACAT
                     AatgaaagcgctgtcaAAATAAAATAACTTGAAAAaaggtgtttgcatttgaatcacg
                     a"
                     /listShort="gltP"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(236416)
                     /Source="Nicolas_upshifts"
                     /id="U166"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.949050949050949"
                     /psig="0.949050949050949"
                     /xcortree=797
                     /SigmaFactorBS="taaaaaagtcccccctgctgcgggggactttttcgccAACAT
                     AatgaaagcgctgtcaAAATAAAATAACTTGAAAAaaggtgtttgcatttgaatcacg
                     a"
                     /listShort="gltP"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(236434..236439)
                     /Source="Nicolas_upshift_promotors"
                     /id="U166"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.949050949050949"
                     /psig="0.949050949050949"
                     /xcortree=797
                     /SigmaFactorBS="taaaaaagtcccccctgctgcgggggactttttcgccAACAT
                     AatgaaagcgctgtcaAAATAAAATAACTTGAAAAaaggtgtttgcatttgaatcacg
                     a"
                     /listShort="gltP"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             complement(236474..238369)
                     /gene="gamP"
                     /locus_tag="BSU_02350"
                     /old_locus_tag="BSU02350"
                     /EC_number="2.7.1.193"
                     /function="16.1: Circulate"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 2a: Function from experimental evidences
                     in other organisms; PubMedId: 10627040, 15849754,
                     16850406; Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphotransferase system (PTS)
                     glucosamine-specific enzyme IICBA component"
                     /protein_id="NP_388117.1"
                     /db_xref="EnsemblGenomes-Gn:BSU02350"
                     /db_xref="EnsemblGenomes-Tr:CAB12029"
                     /db_xref="GOA:P39816"
                     /db_xref="InterPro:IPR001127"
                     /db_xref="InterPro:IPR001996"
                     /db_xref="InterPro:IPR003352"
                     /db_xref="InterPro:IPR011055"
                     /db_xref="InterPro:IPR011299"
                     /db_xref="InterPro:IPR013013"
                     /db_xref="InterPro:IPR018113"
                     /db_xref="InterPro:IPR036878"
                     /db_xref="SubtiList:BG11014"
                     /db_xref="UniProtKB/Swiss-Prot:P39816"
                     /translation="MFKKAFQILQQLGRALMTPVAVLPAAGLLLRFGDKDLLNIPIIK
                     DAGGVVFDNLPLIFAVGVAIGLAGGEGVAGLAAVIGYLILTVTLDNMGKLLGLQPPYE
                     GAEHLIDMGVFGGIIIGLLAAYLYKRFSSIELHPVLGFFSGKRFVPIITSVSSLVIGV
                     IFSFVWPLIQNGINAASSLIADSTVGLFFYATIYRLLIPFGLHHIFYTPFYFMMGEYT
                     DPSTGNTVTGDLTRFFAGDPTAGRFMMGDFPYMIFCLPAVALAIIHTARPEKKKMISG
                     VMISAALTSMLTGITEPVEFSFLFVAPVLYLINSILAGVIFVVCDLFHVRHGYTFSGG
                     GIDYVLNYGLSTNGWVVIPVGIVFAFIYYYLFRFAILKWNLKTPGRETDEDGQNEEKA
                     PVAKDQLAFHVLQALGGQQNIANLDACITRLRVTVHQPSQVCKDELKRLGAVGVLEVN
                     NNFQAIFGTKSDALKDDIKTIMAGGVPATAAALDTVTDKPLKPDSDETFIYPIKGETV
                     SLGDVPDQVFSEKMMGEGFAIIPSEGKVVAPADGEIVSIFPTKHAIGFMSAGGTEILI
                     HVGIDTVKLNGEGFEAHVTSGQAVKQGELLLTFDLNYIKQHAASAITPVIFTNTSEED
                     LKHIQMK*"
                     /label="gamP CDS"
     gene            complement(236474..238369)
                     /gene="gamP"
                     /locus_tag="BSU_02350"
                     /old_locus_tag="BSU02350"
                     /label="gamP gene"
     downshifts      complement(236490)
                     /Source="Nicolas_upshifts"
                     /id="D90"
                     /incds=0
                     /nref=56
                     /ntot=192
                     /MaxReadThrough="1.9947"
                     /MaxDrop="6.51864"
                     /score="5.87664177"
                     /energy="-12.1"
                     /TU="NA"
                     /idTUdmin="U168"
                     /TUdmin="-8"
                     /isTUend="TRUE"
                     /label="downshifts"
     misc_feature    238235..238254
                     /Source="Nicolas_upshift_promotors"
                     /id="U167"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.701298701298701"
                     /psig="0.975024975024975"
                     /xcortree=2747
                     /SigmaFactorBS="cggcgaaaatcagcggaaggttatcgaatacaacgccgcccg
                     cATCCTTTATAATAGGGATGTtcagtaaatccttgtctccgaaacggagcaaaagacc
                     t"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_single_box"
                     /note="Geneious type: promotor_single_box"
     upshifts        238252
                     /Source="Nicolas_upshifts"
                     /id="U167"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.701298701298701"
                     /psig="0.975024975024975"
                     /xcortree=2747
                     /SigmaFactorBS="cggcgaaaatcagcggaaggttatcgaatacaacgccgcccg
                     cATCCTTTATAATAGGGATGTtcagtaaatccttgtctccgaaacggagcaaaagacc
                     t"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             complement(238390..239139)
                     /gene="gamA"
                     /locus_tag="BSU_02360"
                     /old_locus_tag="BSU02360"
                     /EC_number="3.5.99.6"
                     /function="16.11: Scavenge (Catabolism)"
                     /function="16.13: Shape"
                     /function="16.2: Construct biomass (Anabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:23667565, 27002132"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 23667565, 27002132;
                     Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="glucosamine-6-phosphate deaminase"
                     /protein_id="NP_388118.1"
                     /db_xref="EnsemblGenomes-Gn:BSU02360"
                     /db_xref="EnsemblGenomes-Tr:CAB12030"
                     /db_xref="GOA:O31458"
                     /db_xref="InterPro:IPR004547"
                     /db_xref="InterPro:IPR006148"
                     /db_xref="InterPro:IPR018321"
                     /db_xref="SubtiList:BG12746"
                     /db_xref="UniProtKB/Swiss-Prot:O31458"
                     /translation="MKILIAEHYEELCKLSAAIIKEQIQAKKDAVLGLATGSTPVGLY
                     KQLISDYQAGEIDFSKVTTFNLDEYAGLSPSHPQSYNHFMHEHLFQHINMQPDHIHIP
                     QGDNPQLEAACKVYEDLIRQAGGIDVQILGIGANGHIGFNEPGSDFEDRTRVVKLSES
                     TIQANARFFGGDPVLVPRLAISMGIKTIMEFSKHIVLLASGEEKADAIQKMAEGPVTT
                     DVPASILQKHNHVTVIADYKAAQKLKSASFS*"
                     /label="gamA CDS"
     gene            complement(238390..239139)
                     /gene="gamA"
                     /locus_tag="BSU_02360"
                     /old_locus_tag="BSU02360"
                     /label="gamA gene"
     S_feature       239112..239293
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_257545_257726"
                     /HighExp="H2O2, T1.30H, G135, dia15, G150, G180, LBGstat,
                     T2.0H, T0.30H, M9-stat"
                     /AntisenseName="nagBB"
                     /AntisenseCor="0.458837556034909"
                     /AntisenseRegPval="-14.7"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="NA"
                     /TUshortPSig="NA"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S90"
     S_feature       complement(239140..239210)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_257573_257643_c"
                     /HighExp="S1, Diami, MG 5, MG t5, dia5, MG 15, MG 10,
                     LPhT, Paraq, G150"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig=1
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S91"
     promotor_-10    complement(239199..239218)
                     /Source="Nicolas_upshift_promotors"
                     /id="U168"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.98901098901099"
                     /psig=1
                     /xcortree=2202
                     /SigmaFactorBS="atccttcttttataacaaattttcagaaattaaTATTGACAg
                     tttgataagggcggTGCTAAATTCGTAATGACAAgtatcataaattggtcataacaaa
                     t"
                     /listShort="S91, nagBB, nagP"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(239214)
                     /Source="Nicolas_upshifts"
                     /id="U168"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.98901098901099"
                     /psig=1
                     /xcortree=2202
                     /SigmaFactorBS="atccttcttttataacaaattttcagaaattaaTATTGACAg
                     tttgataagggcggTGCTAAATTCGTAATGACAAgtatcataaattggtcataacaaa
                     t"
                     /listShort="S91, nagBB, nagP"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(239234..239241)
                     /Source="Nicolas_upshift_promotors"
                     /id="U168"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.98901098901099"
                     /psig=1
                     /xcortree=2202
                     /SigmaFactorBS="atccttcttttataacaaattttcagaaattaaTATTGACAg
                     tttgataagggcggTGCTAAATTCGTAATGACAAgtatcataaattggtcataacaaa
                     t"
                     /listShort="S91, nagBB, nagP"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-35    239280..239287
                     /Source="Nicolas_upshift_promotors"
                     /id="U169"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.662337662337662"
                     /psig=1
                     /xcortree=1865
                     /SigmaFactorBS="gtcaatattaatttctgaaaatttgttataaaagaaggatac
                     aaaTCTTTCATattgggagggcaAATGGTATTATGGTCTCAATgaaaaagaacggatt
                     g"
                     /listShort="ybgA, ybgB"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     upshifts        239295
                     /Source="Nicolas_upshifts"
                     /id="U169"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.662337662337662"
                     /psig=1
                     /xcortree=1865
                     /SigmaFactorBS="gtcaatattaatttctgaaaatttgttataaaagaaggatac
                     aaaTCTTTCATattgggagggcaAATGGTATTATGGTCTCAATgaaaaagaacggatt
                     g"
                     /listShort="ybgA, ybgB"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-10    239300..239319
                     /Source="Nicolas_upshift_promotors"
                     /id="U169"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.662337662337662"
                     /psig=1
                     /xcortree=1865
                     /SigmaFactorBS="gtcaatattaatttctgaaaatttgttataaaagaaggatac
                     aaaTCTTTCATattgggagggcaAATGGTATTATGGTCTCAATgaaaaagaacggatt
                     g"
                     /listShort="ybgA, ybgB"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     CDS             239358..240065
                     /gene="gamR"
                     /locus_tag="BSU_02370"
                     /old_locus_tag="BSU02370"
                     /function="16.3: Control"
                     /experiment="publication(s) with functional evidences,
                     PMID:23667565, 24673833"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 23667565, 24673833;
                     Product type r: regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator-GlcN6P (GntR family)"
                     /protein_id="NP_388119.1"
                     /db_xref="EnsemblGenomes-Gn:BSU02370"
                     /db_xref="EnsemblGenomes-Tr:CAB12031"
                     /db_xref="GOA:O31459"
                     /db_xref="InterPro:IPR000524"
                     /db_xref="InterPro:IPR011663"
                     /db_xref="InterPro:IPR028978"
                     /db_xref="InterPro:IPR036388"
                     /db_xref="InterPro:IPR036390"
                     /db_xref="SubtiList:BG12747"
                     /db_xref="UniProtKB/Swiss-Prot:O31459"
                     /translation="MTALYSVIKFKIIELIKSGKYQANDQLPTESEFCEQYDVSRTTV
                     RLALQQLELEGYIKRIQGKGTFVSAAKIQTPIPHKITSFAEQMRGLRSESKVLELVVI
                     PADHSIAELLKMKENEPVNKLVRVRYAEGEPLQYHTSYIPWKAAPGLAQEECTGSLFE
                     LLRTKYNIEISRGTESIEPILTDETISGHLLTNVGAPAFLSESLTYDKNEEVVEYAQI
                     ITRGDRTKFTVEQSYHS*"
                     /label="gamR CDS"
     gene            239358..240065
                     /gene="gamR"
                     /locus_tag="BSU_02370"
                     /old_locus_tag="BSU02370"
                     /label="gamR gene"
     promotor_-35    240031..240032
                     /Source="Nicolas_upshift_promotors"
                     /id="U170"
                     /multdbtbs="SigY"
                     /comp="M9"
                     /sig="Sig-"
                     /pcomp="0.41958041958042"
                     /psig="0.41958041958042"
                     /xcortree=1684
                     /SigmaFactorBS="aatatgcgcaaattattacacggggagaccgaaCGaaattca
                     ccgtagaaCAGTCATATCATTCAtaaagcaatgtgttttaagaagggaatggtggttc
                     t"
                     /listShort="ybgB"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    240048..240062
                     /Source="Nicolas_upshift_promotors"
                     /id="U170"
                     /multdbtbs="SigY"
                     /comp="M9"
                     /sig="Sig-"
                     /pcomp="0.41958041958042"
                     /psig="0.41958041958042"
                     /xcortree=1684
                     /SigmaFactorBS="aatatgcgcaaattattacacggggagaccgaaCGaaattca
                     ccgtagaaCAGTCATATCATTCAtaaagcaatgtgttttaagaagggaatggtggttc
                     t"
                     /listShort="ybgB"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        240058
                     /Source="Nicolas_upshifts"
                     /id="U170"
                     /multdbtbs="SigY"
                     /comp="M9"
                     /sig="Sig-"
                     /pcomp="0.41958041958042"
                     /psig="0.41958041958042"
                     /xcortree=1684
                     /SigmaFactorBS="aatatgcgcaaattattacacggggagaccgaaCGaaattca
                     ccgtagaaCAGTCATATCATTCAtaaagcaatgtgttttaagaagggaatggtggttc
                     t"
                     /listShort="ybgB"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             240099..240374
                     /gene="ybgB"
                     /locus_tag="BSU_02380"
                     /old_locus_tag="BSU02380"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms; PubMedId: 12897008, 23667565"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved protein of unknown function (B.
                     subtilis-specific)"
                     /protein_id="NP_388120.1"
                     /db_xref="EnsemblGenomes-Gn:BSU02380"
                     /db_xref="EnsemblGenomes-Tr:CAB12032"
                     /db_xref="GOA:O31460"
                     /db_xref="InterPro:IPR012867"
                     /db_xref="SubtiList:BG12748"
                     /db_xref="UniProtKB/Swiss-Prot:O31460"
                     /translation="MFLFTNGKVLWGAVIAAFILSIVFYPFLPTQMPIHYDVANSPDL
                     TVNKLAGTVMLPVLMVVFAWARKINWQFVFAVYILLICHIVVLCLAL*"
                     /label="ybgB CDS"
     gene            240099..240374
                     /gene="ybgB"
                     /locus_tag="BSU_02380"
                     /old_locus_tag="BSU02380"
                     /label="ybgB gene"
     promotor_-10    complement(240157..240175)
                     /Source="Nicolas_upshift_promotors"
                     /id="U171"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp="0.977022977022977"
                     /psig="0.977022977022977"
                     /xcortree=112
                     /SigmaFactorBS="ggactgttcgcaacatcataatgaatcGGCATCTgcgtcggc
                     agaaaaGGGTAAAATACAATTGAAAggatgaatgcagcaatcactgctccccacagca
                     c"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(240163)
                     /Source="Nicolas_upshifts"
                     /id="U171"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp="0.977022977022977"
                     /psig="0.977022977022977"
                     /xcortree=112
                     /SigmaFactorBS="ggactgttcgcaacatcataatgaatcGGCATCTgcgtcggc
                     agaaaaGGGTAAAATACAATTGAAAggatgaatgcagcaatcactgctccccacagca
                     c"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(240190..240196)
                     /Source="Nicolas_upshift_promotors"
                     /id="U171"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp="0.977022977022977"
                     /psig="0.977022977022977"
                     /xcortree=112
                     /SigmaFactorBS="ggactgttcgcaacatcataatgaatcGGCATCTgcgtcggc
                     agaaaaGGGTAAAATACAATTGAAAggatgaatgcagcaatcactgctccccacagca
                     c"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     downshifts      240366
                     /Source="Nicolas_upshifts"
                     /id="D91"
                     /incds=0
                     /nref=20
                     /ntot=130
                     /MaxReadThrough="2.42422"
                     /MaxDrop="3.75723"
                     /score="4.58454735"
                     /energy="-9.4"
                     /TU="NA"
                     /idTUdmin="U169"
                     /TUdmin=0
                     /isTUend="TRUE"
                     /label="downshifts"
     promotor_-35    240417..240421
                     /Source="Nicolas_upshift_promotors"
                     /id="U172"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.641358641358641"
                     /psig="0.998001998001998"
                     /xcortree=2879
                     /SigmaFactorBS="gccagaataaaactggctgttttctttaatttcaGCTTCatc
                     tgacaatgaatgTGGTGTATAATAGCTGATGAtcctaaagaatattctgaaatttata
                     g"
                     /listShort="S92, ilvE"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    240437..240456
                     /Source="Nicolas_upshift_promotors"
                     /id="U172"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.641358641358641"
                     /psig="0.998001998001998"
                     /xcortree=2879
                     /SigmaFactorBS="gccagaataaaactggctgttttctttaatttcaGCTTCatc
                     tgacaatgaatgTGGTGTATAATAGCTGATGAtcctaaagaatattctgaaatttata
                     g"
                     /listShort="S92, ilvE"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        240443
                     /Source="Nicolas_upshifts"
                     /id="U172"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.641358641358641"
                     /psig="0.998001998001998"
                     /xcortree=2879
                     /SigmaFactorBS="gccagaataaaactggctgttttctttaatttcaGCTTCatc
                     tgacaatgaatgTGGTGTATAATAGCTGATGAtcctaaagaatattctgaaatttata
                     g"
                     /listShort="S92, ilvE"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     S_feature       240454..240582
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_258887_259015"
                     /HighExp="T2.30H, S5, T2.0H, T1.30H, M9-stat, T3.0H,
                     T3.30H, S4, T1.0H, T-0.40H"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.998"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S92"
     CDS             240583..241653
                     /gene="ilvE"
                     /locus_tag="BSU_02390"
                     /old_locus_tag="BSU02390"
                     /EC_number="2.6.1.42"
                     /function="16.11: Scavenge (Catabolism)"
                     /function="16.2: Construct biomass (Anabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:12670965, 15060025, 15102328, 20332210, 23429746"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 12670965, 15060025,
                     15102328, 20332210, 23429746; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="isoleucine-valine aminotransferase / aromatic
                     amino acid aminotransferase"
                     /protein_id="NP_388121.1"
                     /db_xref="EnsemblGenomes-Gn:BSU02390"
                     /db_xref="EnsemblGenomes-Tr:CAB12033"
                     /db_xref="GOA:O31461"
                     /db_xref="InterPro:IPR001544"
                     /db_xref="InterPro:IPR005786"
                     /db_xref="InterPro:IPR018300"
                     /db_xref="InterPro:IPR033939"
                     /db_xref="InterPro:IPR036038"
                     /db_xref="SubtiList:BG12749"
                     /db_xref="UniProtKB/Swiss-Prot:O31461"
                     /translation="MNKLIEREKTVYYKEKPDPSSLGFGQYFTDYMFVMDYEEGIGWH
                     HPRIAPYAPLTLDPSSSVFHYGQAVFEGLKAYRTDDGRVLLFRPDQNIKRLNRSCERM
                     SMPPLDEELVLEALTQLVELEKDWVPKEKGTSLYIRPFVIATEPSLGVKASRSYTFMI
                     VLSPVGSYYGDDQLKPVRIYVEDEYVRAVNGGVGFAKTAGNYAASLQAQRKANELGYD
                     QVLWLDAIEKKYVEEVGSMNIFFVINGEAVTPALSGSILSGVTRASAIELIRSWGIPV
                     REERISIDEVYAASARGELTEVFGTGTAAVVTPVGELNIHGKTVIVGDGQIGDLSKKL
                     YETITDIQLGKVKGPFNWTVEV*"
                     /label="ilvE CDS"
     gene            240583..241653
                     /gene="ilvE"
                     /locus_tag="BSU_02390"
                     /old_locus_tag="BSU02390"
                     /label="ilvE gene"
     downshifts      241642
                     /Source="Nicolas_upshifts"
                     /id="D92"
                     /incds=0
                     /nref=124
                     /ntot=245
                     /MaxReadThrough="1.34575"
                     /MaxDrop="6.88046"
                     /score="13.1364544"
                     /energy="-9.4"
                     /TU="NA"
                     /idTUdmin="U172"
                     /TUdmin=0
                     /isTUend="TRUE"
                     /label="downshifts"
     CDS             complement(241690..243102)
                     /gene="ybgF"
                     /locus_tag="BSU_02400"
                     /old_locus_tag="BSU02400"
                     /function="16.1: Circulate"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 7704263, 15849754,
                     16850406; Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="putative aminoacid permease"
                     /protein_id="NP_388122.1"
                     /db_xref="EnsemblGenomes-Gn:BSU02400"
                     /db_xref="EnsemblGenomes-Tr:CAB12034"
                     /db_xref="GOA:O31462"
                     /db_xref="InterPro:IPR002293"
                     /db_xref="InterPro:IPR004840"
                     /db_xref="InterPro:IPR004841"
                     /db_xref="SubtiList:BG12750"
                     /db_xref="UniProtKB/Swiss-Prot:O31462"
                     /translation="MNSAHNKNETTFQRSMKSRHLFMLSLGGVIGTGLFLSSGYTIQQ
                     AGPAGTILAYLVGAGIVYLVMLCLGELSVAMPVTGAFHTYAAKYIGPGTGFTVAWLYW
                     LTWTVALGSEFTAAGLLMQRWFPHTSVWMWSAVFALFIFLLNAFSVKFFAESEFWFSS
                     IKVLAIVLFILLGGSAMFGIIPIKGGEAAPMLSNFTAEGGLFPNGFVPILMTMLSVNF
                     AFSGTELIGIAAGESVDPDKTIPKAIKTTVWRLSLFFVGTIFVLSGLIPIQDAGVIKS
                     PFVAVFDRVGVPYAADIMNFVILTAILSAANSGLYASSRMLWSLSKEKTLHPTFAKLT
                     SKGTPFNALVFSMIGGILSLLSSVFAPDTVYVVLVSISGFAVVVVWMGIAASQFMFRK
                     RYIEAGNKVTDLKYRTPLYPFVPIAAFLLCLASVVGIAFDPNQRIALYCGVPFMAICY
                     AIYYVKNRKSQPAADMTHSK*"
                     /label="ybgF CDS"
     gene            complement(241690..243102)
                     /gene="ybgF"
                     /locus_tag="BSU_02400"
                     /old_locus_tag="BSU02400"
                     /label="ybgF gene"
     downshifts      complement(241707)
                     /Source="Nicolas_upshifts"
                     /id="D93"
                     /incds=0
                     /nref=43
                     /ntot=166
                     /MaxReadThrough="0.37503"
                     /MaxDrop="5.92001"
                     /score="6.94246417"
                     /energy="-9.4"
                     /TU="NA"
                     /idTUdmin="U173"
                     /TUdmin="-11"
                     /isTUend="TRUE"
                     /label="downshifts"
     S_feature       complement(243103..243214)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_261536_261647_c"
                     /HighExp="BMM, S1, MG 45, MG 60, UNK1, MG t5, MG 10, MG
                     90, MG-0.2, M9-exp"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig=1
                     /TUlongSig="SigA"
                     /TUlongPSig="0.999"
                     /label="S93"
     promotor_-10    complement(243187..243206)
                     /Source="Nicolas_upshift_promotors"
                     /id="U173"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.943056943056943"
                     /psig=1
                     /xcortree=3071
                     /SigmaFactorBS="cgaaaatattcaagaaattgcggcttgggcccgctctttaaa
                     aacaACTTGACTtatcggaatagtttGTATATTCTAACTTAAAGCCggttcgccggag
                     t"
                     /listShort="S93, ybgF"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(243214)
                     /Source="Nicolas_upshifts"
                     /id="U173"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.943056943056943"
                     /psig=1
                     /xcortree=3071
                     /SigmaFactorBS="cgaaaatattcaagaaattgcggcttgggcccgctctttaaa
                     aacaACTTGACTtatcggaatagtttGTATATTCTAACTTAAAGCCggttcgccggag
                     t"
                     /listShort="S93, ybgF"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(243221..243228)
                     /Source="Nicolas_upshift_promotors"
                     /id="U173"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.943056943056943"
                     /psig=1
                     /xcortree=3071
                     /SigmaFactorBS="cgaaaatattcaagaaattgcggcttgggcccgctctttaaa
                     aacaACTTGACTtatcggaatagtttGTATATTCTAACTTAAAGCCggttcgccggag
                     t"
                     /listShort="S93, ybgF"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             complement(243223..244170)
                     /gene="ybgG"
                     /locus_tag="BSU_02410"
                     /old_locus_tag="BSU02410"
                     /EC_number="2.1.1.10"
                     /function="16.6: Maintain"
                     /function="16.11: Scavenge (Catabolism)"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 2a: Function from experimental evidences
                     in other organisms; PubMedId: 11267663, 15995196,
                     17264075; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="homocysteine methylase using (R,S)AdoMet"
                     /protein_id="NP_388123.1"
                     /db_xref="EnsemblGenomes-Gn:BSU02410"
                     /db_xref="EnsemblGenomes-Tr:CAB12035"
                     /db_xref="GOA:O31463"
                     /db_xref="InterPro:IPR003726"
                     /db_xref="InterPro:IPR017226"
                     /db_xref="InterPro:IPR036589"
                     /db_xref="SubtiList:BG12751"
                     /db_xref="UniProtKB/Swiss-Prot:O31463"
                     /translation="MNPIQHILDTYPLIVLDGAMATELERKGCNLNDSLWSAKILMEE
                     PELIKQVHTDYFAAGADCAITASYQSTFEGFAARGLSEAEARRLIELSVSIAAEARDE
                     FWSLEENRLNRPKPIIAASIGPYGAYLADGSEYRGNYAISEDELIEFHRPRMKALIEA
                     GADVLACETIPCLTEAKAIVRLLKEFPETYAWISFSAKDGLHISDGTPAADCASWLDE
                     HRQIAALGINCTPLQHIPSLIEELKKNTSKPIIVYPNSGEQYDPETKTWNGAACAESY
                     GASARTWHEKGARLIGGCCRTKPENIQEIAAWARSLKTT*"
                     /label="ybgG CDS"
     gene            complement(243223..244170)
                     /gene="ybgG"
                     /locus_tag="BSU_02410"
                     /old_locus_tag="BSU02410"
                     /label="ybgG gene"
     promotor_-10    complement(244208..244227)
                     /Source="Nicolas_upshift_promotors"
                     /id="U174"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.993006993006993"
                     /psig="0.999000999001"
                     /xcortree=3068
                     /SigmaFactorBS="agacatatgggctgaacacctttctctttttgcgttTATTGA
                     CAaacacgtaagcctcCATTACGATTTTCATATCTTtttcaaaaaaatctgaaagaag
                     g"
                     /listShort="ybgG"
                     /listLong="S93, ybgF"
                     /label="promotor_-10"
     upshifts        complement(244225)
                     /Source="Nicolas_upshifts"
                     /id="U174"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.993006993006993"
                     /psig="0.999000999001"
                     /xcortree=3068
                     /SigmaFactorBS="agacatatgggctgaacacctttctctttttgcgttTATTGA
                     CAaacacgtaagcctcCATTACGATTTTCATATCTTtttcaaaaaaatctgaaagaag
                     g"
                     /listShort="ybgG"
                     /listLong="S93, ybgF"
                     /label="upshifts"
     promotor_-35    complement(244242..244249)
                     /Source="Nicolas_upshift_promotors"
                     /id="U174"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.993006993006993"
                     /psig="0.999000999001"
                     /xcortree=3068
                     /SigmaFactorBS="agacatatgggctgaacacctttctctttttgcgttTATTGA
                     CAaacacgtaagcctcCATTACGATTTTCATATCTTtttcaaaaaaatctgaaagaag
                     g"
                     /listShort="ybgG"
                     /listLong="S93, ybgF"
                     /label="promotor_-35"
     CDS             complement(244299..245735)
                     /gene="glnT"
                     /locus_tag="BSU_02420"
                     /old_locus_tag="BSU02420"
                     /function="16.1: Circulate"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 2b: Function from indirect experimental
                     evidences (e.g. phenotypes); PubMedId: 15849754, 15995196,
                     16850406; Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine transporter"
                     /protein_id="NP_388124.2"
                     /db_xref="EnsemblGenomes-Gn:BSU02420"
                     /db_xref="EnsemblGenomes-Tr:CAB12036"
                     /db_xref="GOA:O31464"
                     /db_xref="InterPro:IPR001463"
                     /db_xref="SubtiList:BG12752"
                     /db_xref="UniProtKB/Swiss-Prot:O31464"
                     /translation="MQQILEHIVGIANDLLWSKLLIVLLLSFGIYFTFRLKFLQVRML
                     KEMVRVLREGAASRSKNSISPFQAFCISMAARVGTGNITGIAIAIALGGPGAIFWMWI
                     IAIIGSASSFVESTLAQIYKVKDVNGFRGGPAYYMEKGLNKRWMGALFAVLITLSFGI
                     VFNSVQSNTVSLAFENAFGTNRLTLGLILIAVFGTIIFGGVKRIAKLAESIVVVLAVL
                     YIGVAFFVIFSNITQLPGVLALIVKNAFGFDQAAGGALGAALMQGVRRGIFSNEAGMG
                     SAPNAAATATTSHPVKQGLIQAFGVLTDTLVICTSTAFIILFSDAYHTPGLSGIALTQ
                     ASLSSHVGSWASGFLAILILLFGFCALIGNYYYGETNIGFLNKSKKLIFVYRIGVLAM
                     IVFGCVAKVQLVWDLADLFMGLMVIVNLIAIFLLSKVVFTALKDYTRQKKAGKDPVFY
                     KDVLKNHNGIECWPVSDTKTDTHNKQIS*"
                     /label="glnT CDS"
     gene            complement(244299..245735)
                     /gene="glnT"
                     /locus_tag="BSU_02420"
                     /old_locus_tag="BSU02420"
                     /label="glnT gene"
     downshifts      complement(244314)
                     /Source="Nicolas_upshifts"
                     /id="D94"
                     /incds=0
                     /nref=3
                     /ntot=3
                     /MaxReadThrough="0.598370000000001"
                     /MaxDrop="4.3935"
                     /score="-7.90227391"
                     /energy="-11.4"
                     /TU="NA"
                     /idTUdmin="U174"
                     /TUdmin="-1078"
                     /isTUend="FALSE"
                     /label="downshifts"
     CDS             complement(245758..246741)
                     /gene="glsA"
                     /locus_tag="BSU_02430"
                     /old_locus_tag="BSU02430"
                     /EC_number="3.5.1.2"
                     /function="16.11: Scavenge (Catabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:15995196, 18459799, 20050917"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 15995196, 18459799,
                     20050917; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="glutaminase"
                     /protein_id="NP_388125.1"
                     /db_xref="EnsemblGenomes-Gn:BSU02430"
                     /db_xref="EnsemblGenomes-Tr:CAB12037"
                     /db_xref="GOA:O31465"
                     /db_xref="InterPro:IPR012338"
                     /db_xref="InterPro:IPR015868"
                     /db_xref="PDB:1MKI"
                     /db_xref="PDB:2OSU"
                     /db_xref="PDB:3AGF"
                     /db_xref="PDB:3BRM"
                     /db_xref="SubtiList:BG12753"
                     /db_xref="UniProtKB/Swiss-Prot:O31465"
                     /translation="MKELIKEHQKDINPALQLHDWVEYYRPFAANGQSANYIPALGKV
                     NDSQLGICVLEPDGTMIHAGDWNVSFTMQSISKVISFIAACMSRGIPYVLDRVDVEPT
                     GDAFNSIIRLEINKPGKPFNPMINAGALTIASILPGESAYEKLEFLYSVMETLIGKRP
                     RIHEEVFRSEWETAHRNRALAYYLKETNFLEAEVEETLEVYLKQCAMESTTEDIALIG
                     LILAHDGYHPIRHEQVIPKDVAKLAKALMLTCGMYNASGKYAAFVGVPAKSGVSGGIM
                     ALVPPSARREQPFQSGCGIGIYGPAIDEYGNSLTGGMLLKHMAQEWELSIF*"
                     /label="glsA CDS"
     gene            complement(245758..246741)
                     /gene="glsA"
                     /locus_tag="BSU_02430"
                     /old_locus_tag="BSU02430"
                     /label="glsA gene"
     promotor_-10    complement(246835..246852)
                     /Source="Nicolas_upshift_promotors"
                     /id="U175"
                     /multdbtbs="SigA"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.71028971028971"
                     /psig="0.97002997002997"
                     /xcortree=1548
                     /SigmaFactorBS="tgcttattttcaaaatgtttttgtcgtATTTTGTAtgattct
                     gtagtctcCATTATACAGTAATTATAccttccgctattatgaaagcgtttaacgcccc
                     c"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     misc_feature    246840..246859
                     /Source="Nicolas_upshift_promotors"
                     /id="U176"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.908091908091908"
                     /psig=1
                     /xcortree=1812
                     /SigmaFactorBS="tcaaaacgaaggctaagggggcgttaaacgctttcataatag
                     cggaaggtataaTTACTGTATAATGGAGACTAcagaatcatacaaaatacgacaaaaa
                     c"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_single_box"
                     /note="Geneious type: promotor_single_box"
     upshifts        complement(246842)
                     /Source="Nicolas_upshifts"
                     /id="U175"
                     /multdbtbs="SigA"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.71028971028971"
                     /psig="0.97002997002997"
                     /xcortree=1548
                     /SigmaFactorBS="tgcttattttcaaaatgtttttgtcgtATTTTGTAtgattct
                     gtagtctcCATTATACAGTAATTATAccttccgctattatgaaagcgtttaacgcccc
                     c"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     upshifts        246846
                     /Source="Nicolas_upshifts"
                     /id="U176"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.908091908091908"
                     /psig=1
                     /xcortree=1812
                     /SigmaFactorBS="tcaaaacgaaggctaagggggcgttaaacgctttcataatag
                     cggaaggtataaTTACTGTATAATGGAGACTAcagaatcatacaaaatacgacaaaaa
                     c"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(246868..246875)
                     /Source="Nicolas_upshift_promotors"
                     /id="U175"
                     /multdbtbs="SigA"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.71028971028971"
                     /psig="0.97002997002997"
                     /xcortree=1548
                     /SigmaFactorBS="tgcttattttcaaaatgtttttgtcgtATTTTGTAtgattct
                     gtagtctcCATTATACAGTAATTATAccttccgctattatgaaagcgtttaacgcccc
                     c"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             247043..248275
                     /gene="glnJ"
                     /locus_tag="BSU_02440"
                     /old_locus_tag="BSU02440"
                     /EC_number="2.7.13.3"
                     /function="16.3: Control"
                     /function="16.12: Sense"
                     /experiment="publication(s) with functional evidences,
                     PMID:11717295, 15995196, 17001076, 21435182, 23461034,
                     25691471"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 11717295, 15995196,
                     17001076, 21435182, 23461034, 25691471; Product type rc :
                     receptor"
                     /codon_start=1
                     /transl_table=11
                     /product="two-component sensor histidine kinase [GlnL]
                     forglutamine degradation"
                     /protein_id="NP_388126.2"
                     /db_xref="EnsemblGenomes-Gn:BSU02440"
                     /db_xref="EnsemblGenomes-Tr:CAB12038"
                     /db_xref="GOA:P40758"
                     /db_xref="InterPro:IPR003594"
                     /db_xref="InterPro:IPR004358"
                     /db_xref="InterPro:IPR005467"
                     /db_xref="InterPro:IPR036890"
                     /db_xref="SubtiList:BG10871"
                     /db_xref="UniProtKB/Swiss-Prot:P40758"
                     /translation="MLITVPLAGELKFYPLNEEFRVSFGAPVFFFFLSLLRHVPAVLP
                     GFLTGAAVFIFRVFLELWGGGHNGLTPILYDQASGFFFYMTYACLFSILKANRFRERP
                     IMLGFIGFMIEVVSDCVELTVQFLIFHTVVTPEKITDIAVIAISHTFIVMSFYSVLKL
                     YETQSREKQTRQQHEHMLMIVSNLYEETVHLKKTLKTTEKVTNDSYQLYREMKGKDVQ
                     LSGRILRLAGEIHEVKKDNQRIFAGLSKLISNESLRDYMRASDLLQLVIRMNEKYAEA
                     LGKQIDFYCSIEGEHDEYHVFIVLSIINNLTANAVEAMDEEGMVSLRLRKPNESMVEF
                     QVEDNGPGISEKIGDIVFDPGFTSKYDEFGTPSTGIGLSYVKEIVTELEGDITFDNQQ
                     RGVVFAIRLPVRHLIQKG*"
                     /label="glnJ CDS"
     gene            247043..248275
                     /gene="glnJ"
                     /locus_tag="BSU_02440"
                     /old_locus_tag="BSU02440"
                     /label="glnJ gene"
     CDS             248286..249230
                     /gene="glnL"
                     /locus_tag="BSU_02450"
                     /old_locus_tag="BSU02450"
                     /function="16.3: Control"
                     /experiment="publication(s) with functional evidences,
                     PMID:11717295, 15995196"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 11717295, 15995196;
                     Product type r: regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="two-component response regulator [GlnJ] for
                     glutamine utilisation"
                     /protein_id="NP_388127.1"
                     /db_xref="EnsemblGenomes-Gn:BSU02450"
                     /db_xref="EnsemblGenomes-Tr:CAB12039"
                     /db_xref="GOA:P40759"
                     /db_xref="InterPro:IPR001789"
                     /db_xref="InterPro:IPR011006"
                     /db_xref="InterPro:IPR013972"
                     /db_xref="SubtiList:BG10872"
                     /db_xref="UniProtKB/Swiss-Prot:P40759"
                     /translation="MRFFIADDDRAVRSILRQIIEDEDLGEAAGEADDGSQVEGHMLQ
                     FKQIDILLIDLLMPGRDGIETIRQIQNTYSGKIVMISQVEAKEMVGEAYSLGIEYFIH
                     KPINRIEIVTVLQKVKERIELEHSIGAIQHSLSRLVNRTERKARPQQKSDSGLKEAGT
                     FLLSELGMMGEGGAHDLMAVLQYLAEHEQSEPHEKQSPSLKQIFTQVAVRKLGTGASQ
                     TEVNREMKASEQRIRRAIIHSLHHFASLGTTDFSNPKFETYASKFFDFPVVSQKMKEL
                     QSKDAKPLAPARINMKKFIHVFFLEAKLLHETMKQRRI*"
                     /label="glnL CDS"
     gene            248286..249230
                     /gene="glnL"
                     /locus_tag="BSU_02450"
                     /old_locus_tag="BSU02450"
                     /label="glnL gene"
     downshifts      249207
                     /Source="Nicolas_upshifts"
                     /id="D95"
                     /incds=0
                     /nref=45
                     /ntot=191
                     /MaxReadThrough="1.43757"
                     /MaxDrop="3.64091"
                     /score="2.73020459"
                     /energy="-6.2"
                     /TU="NA"
                     /idTUdmin="U177"
                     /TUdmin="-484"
                     /isTUend="FALSE"
                     /label="downshifts"
     promotor_-35    249327..249334
                     /Source="Nicolas_upshift_promotors"
                     /id="U177"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.982017982017982"
                     /psig="0.999000999001"
                     /xcortree=370
                     /SigmaFactorBS="gccggacagtgatttaccgcttttttataaaatatcagaaaa
                     taaagaTATTGACTtattgtttatttgTCTTACAATTAAACAAAAGGatatatgggaa
                     g"
                     /listShort="S94, ycbC"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     S_feature       249339..249456
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_267772_267889"
                     /HighExp="Sw, BC, M40t90, Etha, MG-0.2, HiTm, HiOs, G135,
                     UNK1, MG-0.1"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.999"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S94"
     upshifts        249339
                     /Source="Nicolas_upshifts"
                     /id="U177"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.982017982017982"
                     /psig="0.999000999001"
                     /xcortree=370
                     /SigmaFactorBS="gccggacagtgatttaccgcttttttataaaatatcagaaaa
                     taaagaTATTGACTtattgtttatttgTCTTACAATTAAACAAAAGGatatatgggaa
                     g"
                     /listShort="S94, ycbC"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-10    249348..249367
                     /Source="Nicolas_upshift_promotors"
                     /id="U177"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.982017982017982"
                     /psig="0.999000999001"
                     /xcortree=370
                     /SigmaFactorBS="gccggacagtgatttaccgcttttttataaaatatcagaaaa
                     taaagaTATTGACTtattgtttatttgTCTTACAATTAAACAAAAGGatatatgggaa
                     g"
                     /listShort="S94, ycbC"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     CDS             249457..250383
                     /gene="kdgD"
                     /locus_tag="BSU_02460"
                     /old_locus_tag="BSU02460"
                     /EC_number="4.2.1.41"
                     /function="16.11: Scavenge (Catabolism)"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 2a: Function from experimental evidences
                     in other organisms; PubMedId: 12044674; Product type e :
                     enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="5-dehydro-4-deoxyglucarate dehydratase"
                     /protein_id="NP_388128.2"
                     /db_xref="EnsemblGenomes-Gn:BSU02460"
                     /db_xref="EnsemblGenomes-Tr:CAB12040"
                     /db_xref="GOA:P42235"
                     /db_xref="InterPro:IPR002220"
                     /db_xref="InterPro:IPR013785"
                     /db_xref="InterPro:IPR017655"
                     /db_xref="SubtiList:BG11158"
                     /db_xref="UniProtKB/Swiss-Prot:P42235"
                     /translation="MSRIRKAPAGILGFPVAPFNTQGKLEEEALFQNIEFLLNEGLEA
                     IFIACGSGEFQSLSQKEYEQMVEVAVSAAGGKVPVYTGVGGNLSTALDWAQLSEKKGA
                     DGYLILPPYLVHGEQEGLYQYAKTIIESTDLNAILYQRDNAVLSVEQIKRLTECEQLV
                     GVKDGVGNMDLNINLVYTIGDRLGWLNGMPMAEVTMPAYLPIGFHSYSSAISNYIPHI
                     SRMFYDALKNGNDELVKELYRHVILPINDIRKQRKGYAVSLIKAGMEIMGLNVRNTAR
                     PPVGPVEKDHYQQLEAILKQAADRFPKKAATV*"
                     /label="kdgD CDS"
     gene            249457..250383
                     /gene="kdgD"
                     /locus_tag="BSU_02460"
                     /old_locus_tag="BSU02460"
                     /label="kdgD gene"
     CDS             250413..251879
                     /gene="gucD"
                     /locus_tag="BSU_02470"
                     /old_locus_tag="BSU02470"
                     /EC_number="1.2.1.26"
                     /function="16.11: Scavenge (Catabolism)"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 2a: Function from experimental evidences
                     in other organisms; PubMedId: 12044674, 17202142; Product
                     type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="2,5-dioxovalerate dehydrogenase
                     (alpha-ketoglutaric semialdehyde dehydrogenase)"
                     /protein_id="NP_388129.1"
                     /db_xref="EnsemblGenomes-Gn:BSU02470"
                     /db_xref="EnsemblGenomes-Tr:CAB12041"
                     /db_xref="GOA:P42236"
                     /db_xref="InterPro:IPR015590"
                     /db_xref="InterPro:IPR016160"
                     /db_xref="InterPro:IPR016161"
                     /db_xref="InterPro:IPR016162"
                     /db_xref="InterPro:IPR029510"
                     /db_xref="SubtiList:BG11159"
                     /db_xref="UniProtKB/Swiss-Prot:P42236"
                     /translation="MSVITEQNTYLNFINGEWVKSQSGDMVKVENPADVNDIVGYVQN
                     STAEDVERAVTAANEAKTAWRKLTGAERGQYLYKTADIMEQRLEEIAACATREMGKTL
                     PEAKGETARGIAILRYYAGEGMRKTGDVIPSTDKDALMFTTRVPLGVVGVISPWNFPV
                     AIPIWKMAPALVYGNTVVIKPATETAVTCAKIIACFEEAGLPAGVINLVTGPGSVVGQ
                     GLAEHDGVNAVTFTGSNQVGKIIGQAALARGAKYQLEMGGKNPVIVADDADLEAAAEA
                     VITGAFRSTGQKCTATSRVIVQSGIYERFKEKLLQRTKDITIGDSLKEDVWMGPIASK
                     NQLDNCLSYIEKGKQEGASLLIGGEKLENGKYQNGYYVQPAIFDNVTSEMTIAQEEIF
                     GPVIALIKVDSIEEALNIANDVKFGLSASIFTENIGRMLSFIDEIDAGLVRINAESAG
                     VELQAPFGGMKQSSSHSREQGEAAKDFFTAIKTVFVKP*"
                     /label="gucD CDS"
     gene            250413..251879
                     /gene="gucD"
                     /locus_tag="BSU_02470"
                     /old_locus_tag="BSU02470"
                     /label="gucD gene"
     CDS             251963..253330
                     /gene="gudP"
                     /locus_tag="BSU_02480"
                     /old_locus_tag="BSU02480"
                     /function="16.1: Circulate"
                     /experiment="publication(s) with functional evidences,
                     PMID:12044674, 15849754, 16850406"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 12044674, 15849754,
                     16850406; Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="glucarate transporter"
                     /protein_id="NP_388130.2"
                     /db_xref="EnsemblGenomes-Gn:BSU02480"
                     /db_xref="EnsemblGenomes-Tr:CAB12042"
                     /db_xref="GOA:P42237"
                     /db_xref="InterPro:IPR000849"
                     /db_xref="InterPro:IPR004744"
                     /db_xref="InterPro:IPR011701"
                     /db_xref="InterPro:IPR020846"
                     /db_xref="InterPro:IPR036259"
                     /db_xref="SubtiList:BG11160"
                     /db_xref="UniProtKB/Swiss-Prot:P42237"
                     /translation="MKKDFASVTPAGKKTSVRWFIVFMLFLVTSINYADRATLSITGD
                     SVQHDLGLDSVAMGYVFSAFGWAYVIGQLPGGWLLDRFGSKTIIALSIFFWSFFTLLQ
                     GAIGFFSAGTAIILLFALRFLVGLSEAPSFPGNGRVVASWFPSSERGTASAFFNSAQY
                     FAIVIFSPLMGWLTHSFGWHSVFVVMGIAGILLAVIWLKTVYEPKKHPKVNEAELAYI
                     EQGGGLISMDDSKSKQETESKWPYIKQLLTNRMLIGVYIAQYCITTLTYFFLTWFPVY
                     LVQARGMSILEAGFVASLPALCGFAGGVLGGIVSDILLKKGRSLTFARKVPIIAGMLL
                     SCSMIVCNYTDSAWLVVVIMSLAFFGKGFGALGWAVVSDTSPKECAGLSGGLFNTFGN
                     IASITTPIIIGYIVNATGSFNGALVFVGANAIAAILSYLLLVGPIKRVVLKKQEQDPD
                     QSLPV*"
                     /label="gudP CDS"
     gene            251963..253330
                     /gene="gudP"
                     /locus_tag="BSU_02480"
                     /old_locus_tag="BSU02480"
                     /label="gudP gene"
     CDS             253367..254734
                     /gene="gudD"
                     /locus_tag="BSU_02490"
                     /old_locus_tag="BSU02490"
                     /EC_number="4.2.1.40"
                     /function="16.11: Scavenge (Catabolism)"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 2a: Function from experimental evidences
                     in other organisms; PubMedId: 9772161, 12044674; Product
                     type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="glucarate dehydratase"
                     /protein_id="NP_388131.2"
                     /db_xref="EnsemblGenomes-Gn:BSU02490"
                     /db_xref="EnsemblGenomes-Tr:CAB12043"
                     /db_xref="GOA:P42238"
                     /db_xref="InterPro:IPR013342"
                     /db_xref="InterPro:IPR017653"
                     /db_xref="InterPro:IPR029017"
                     /db_xref="InterPro:IPR029065"
                     /db_xref="InterPro:IPR034390"
                     /db_xref="InterPro:IPR034598"
                     /db_xref="InterPro:IPR036849"
                     /db_xref="SubtiList:BG11161"
                     /db_xref="UniProtKB/Swiss-Prot:P42238"
                     /translation="MSSPIQEQVQKEKRSNIPSISEMKVIPVAGHDSMLLNLSGAHSP
                     FFTRNIVILTDSSGNQGVGEVPGGEHIRRTLELSEPLVVGKSIGAYQAILQTVRKQFG
                     DQDRGGRGNQTFDLRTTVHAVTALEAALLDLLGKFLQEPVAALLGEGKQRDEVKMLGY
                     LFYIGDRNRTTLPYQSDEQSDCAWFRLRHEEALTPEAIVRLAESAQERYGFQDFKLKG
                     GVLRGEEEIEAVTALSKRFPEARITLDPNGAWSLEEAIALCKGKQDVLAYAEDPCGDE
                     NGYSAREVMAEFRRATGLPTATNMIATDWREMGHAIQLHAVDIPLADPHFWTMQGSVR
                     VAQMCHDWGLTWGSHSNNHFDISLAMFTHVAAAAPGRITAIDTHWIWQDGQRLTKQPF
                     EISSGCVKVPDKPGLGVDIDMEQVEKAHEIYRKMNLGARNDAIPMQFLISNWEFDRKR
                     PCLVR*"
                     /label="gudD CDS"
     gene            253367..254734
                     /gene="gudD"
                     /locus_tag="BSU_02490"
                     /old_locus_tag="BSU02490"
                     /label="gudD gene"
     promotor_-35    254748..254755
                     /Source="Nicolas_upshift_promotors"
                     /id="U178"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.586413586413586"
                     /psig="0.999000999001"
                     /xcortree=2135
                     /SigmaFactorBS="gcgcccgtgtcttgtgcgataagtttgattgtaaaTATTGTC
                     AtatccgctattttgTCTTACAATTGAACAACTgaagggagagttgttcgtgtacgaa
                     g"
                     /listShort="ycbG, garD"
                     /listLong="S95, ycbJ, NA"
                     /label="promotor_-35"
     promotor_-10    254770..254787
                     /Source="Nicolas_upshift_promotors"
                     /id="U178"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.586413586413586"
                     /psig="0.999000999001"
                     /xcortree=2135
                     /SigmaFactorBS="gcgcccgtgtcttgtgcgataagtttgattgtaaaTATTGTC
                     AtatccgctattttgTCTTACAATTGAACAACTgaagggagagttgttcgtgtacgaa
                     g"
                     /listShort="ycbG, garD"
                     /listLong="S95, ycbJ, NA"
                     /label="promotor_-10"
     upshifts        254773
                     /Source="Nicolas_upshifts"
                     /id="U178"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.586413586413586"
                     /psig="0.999000999001"
                     /xcortree=2135
                     /SigmaFactorBS="gcgcccgtgtcttgtgcgataagtttgattgtaaaTATTGTC
                     AtatccgctattttgTCTTACAATTGAACAACTgaagggagagttgttcgtgtacgaa
                     g"
                     /listShort="ycbG, garD"
                     /listLong="S95, ycbJ, NA"
                     /label="upshifts"
     CDS             254804..255505
                     /gene="garR"
                     /locus_tag="BSU_02500"
                     /old_locus_tag="BSU02500"
                     /function="16.3: Control"
                     /experiment="publication(s) with functional evidences,
                     PMID:12044674"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 12044674; Product type r:
                     regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator (GntR family)"
                     /protein_id="NP_388132.2"
                     /db_xref="EnsemblGenomes-Gn:BSU02500"
                     /db_xref="EnsemblGenomes-Tr:CAB12044"
                     /db_xref="GOA:P42239"
                     /db_xref="InterPro:IPR000524"
                     /db_xref="InterPro:IPR008920"
                     /db_xref="InterPro:IPR011711"
                     /db_xref="InterPro:IPR036388"
                     /db_xref="InterPro:IPR036390"
                     /db_xref="SubtiList:BG11162"
                     /db_xref="UniProtKB/Swiss-Prot:P42239"
                     /translation="MYEGLEDLKVDTVNRKTLAKQVIERIVHLLSSGQLRAGDKLPTE
                     MELMDILHVSRPVLREALSSLETLGVITRKTRGGTYFNDKIGMQPFSVMLALATDNLP
                     AIIEARMALELGLVTIAAEKINEEELQRLQKTIDDIANSTDNHYGEADKEFHRIIALS
                     ANNPVVEGMIQSLLITHAKIDSQIPYRERDVTVEYHKKIYDALAKRDPYKAHYHMYEH
                     LKFVRDKILKGMDEK*"
                     /label="garR CDS"
     gene            254804..255505
                     /gene="garR"
                     /locus_tag="BSU_02500"
                     /old_locus_tag="BSU02500"
                     /label="garR gene"
     downshifts      255455
                     /Source="Nicolas_upshifts"
                     /id="D96"
                     /incds=0
                     /nref=1
                     /ntot=35
                     /MaxReadThrough="3.59234"
                     /MaxDrop="2.3923"
                     /score="4.10541728"
                     /energy="-9.5"
                     /TU="U178"
                     /idTUdmin="U178"
                     /TUdmin="-1694"
                     /isTUend="FALSE"
                     /label="downshifts"
     downshifts      255499
                     /Source="Nicolas_upshifts"
                     /id="D97"
                     /incds=0
                     /nref=1
                     /ntot=82
                     /MaxReadThrough="3.21794"
                     /MaxDrop="2.49226"
                     /score="4.10541728"
                     /energy="-9.5"
                     /TU="U178"
                     /idTUdmin="U178"
                     /TUdmin="-1650"
                     /isTUend="FALSE"
                     /label="downshifts"
     CDS             255596..257128
                     /gene="garD"
                     /locus_tag="BSU_02510"
                     /old_locus_tag="BSU02510"
                     /EC_number="4.2.1.42"
                     /function="16.11: Scavenge (Catabolism)"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 2a: Function from experimental evidences
                     in other organisms; PubMedId: 9772162; Product type e :
                     enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="D-galactarate dehydratase"
                     /protein_id="NP_388133.2"
                     /db_xref="EnsemblGenomes-Gn:BSU02510"
                     /db_xref="EnsemblGenomes-Tr:CAB12045"
                     /db_xref="GOA:P42240"
                     /db_xref="InterPro:IPR007392"
                     /db_xref="InterPro:IPR013974"
                     /db_xref="InterPro:IPR017654"
                     /db_xref="SubtiList:BG11163"
                     /db_xref="UniProtKB/Swiss-Prot:P42240"
                     /translation="MAMNLRKNQAPLYIKVHEIDNTAIIVNDGGLPKGTVFSCGLVLE
                     EDVPQGHKVALTDLNQGDEIVRYGEVIGFADETIKRGSWIREALVRMPAPPALDDLPL
                     ANRVPQPRPPLEGYTFEGYRNADGSAGTKNILGITTSVQCVVGVLDYAVKRIKEELLP
                     KYPNVDDVVPLHHQYGCGVAINAPDAVIPIRTIQNLAKHPNFGGEVMVIGLGCEKLLP
                     ERIASENDDDILSLQDHRGFAAMIQSILEMAEERLIRLNSRTRVSCPVSDLVIGLQCG
                     GSDAFSGVTANPAVGYAADLLVRAGATVLFSEVTEVRDAIHLLTPRAVSEEVGQSLIK
                     EMKWYDSYLRRGDADRSANPSPGNKKGGLSNVVEKALGSVAKSGTSPISGVLGPGERA
                     KQKGLLFAATPASDFVCGTLQLAAGMNLQVFTTGRGTPYGLAAAPVLKVSTRHSLSEH
                     WADLIDINAGRIATGEASIEDVGWEIFRTILDVASGRKQTWADRWGLHNDLCLFNPAP
                     VT*"
                     /label="garD CDS"
     gene            255596..257128
                     /gene="garD"
                     /locus_tag="BSU_02510"
                     /old_locus_tag="BSU02510"
                     /label="garD gene"
     promotor_-35    257140..257143
                     /Source="Nicolas_upshift_promotors"
                     /id="U179"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.927072927072927"
                     /psig=1
                     /xcortree=422
                     /SigmaFactorBS="tcctgctccagtgacttgattcatgtttttATAGcggaaaga
                     tggaatATGCTGTAAAATGAAAATCAgcgtataggaaacggaggggttacagcatggc
                     a"
                     /listShort="S95, ycbJ, NA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    257158..257177
                     /Source="Nicolas_upshift_promotors"
                     /id="U179"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.927072927072927"
                     /psig=1
                     /xcortree=422
                     /SigmaFactorBS="tcctgctccagtgacttgattcatgtttttATAGcggaaaga
                     tggaatATGCTGTAAAATGAAAATCAgcgtataggaaacggaggggttacagcatggc
                     a"
                     /listShort="S95, ycbJ, NA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     S_feature       257170..257404
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_275603_275837"
                     /HighExp="LoTm, Sw, BC, BI, B60, B36, T3.30H, T5.0H,
                     T4.0H, T3.0H"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="0.50265400000000005"
                     /TUshortSig="SigA"
                     /TUshortPSig=1
                     /TUlongSig="SigA"
                     /TUlongPSig="0.999"
                     /label="S95"
     upshifts        257170
                     /Source="Nicolas_upshifts"
                     /id="U179"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.927072927072927"
                     /psig=1
                     /xcortree=422
                     /SigmaFactorBS="tcctgctccagtgacttgattcatgtttttATAGcggaaaga
                     tggaatATGCTGTAAAATGAAAATCAgcgtataggaaacggaggggttacagcatggc
                     a"
                     /listShort="S95, ycbJ, NA"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             257405..258325
                     /gene="ycbJ"
                     /locus_tag="BSU_02520"
                     /old_locus_tag="BSU02520"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 12044674; Product type
                     e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative phosphotransferase"
                     /protein_id="NP_388134.1"
                     /db_xref="EnsemblGenomes-Gn:BSU02520"
                     /db_xref="EnsemblGenomes-Tr:CAB12046"
                     /db_xref="GOA:P42242"
                     /db_xref="InterPro:IPR002575"
                     /db_xref="InterPro:IPR011009"
                     /db_xref="SubtiList:BG11165"
                     /db_xref="UniProtKB/Swiss-Prot:P42242"
                     /translation="MTNLNEKQLITEIVGLARSQGLTVHSENAQLNETGMDFQVVFAK
                     DDTGMPWVLRKPRRSDVVERASAEGITLAFLRANLTADVPDWRIHTPELIAYPMLKGT
                     PAAGIDLEQKQYVWNMDHQPPSDDFVRTLADILAELHGTDQISAGQSGIEVIRPEDFR
                     QMTADSMVDVKNKLGVSTTLWERWQKWVDDDAYWPGFSSLIHGDLHPPHILIDQNGRV
                     TGLLDWTEAKVADPAKDFVLYQTIFGEKETARLLEYYDQAGGRIWAKMQEHISEMQAA
                     YPVEIAKLALQTQQEEHINMALEALGVTSD*"
                     /label="ycbJ CDS"
     gene            257405..258325
                     /gene="ycbJ"
                     /locus_tag="BSU_02520"
                     /old_locus_tag="BSU02520"
                     /label="ycbJ gene"
     promotor_-35    258327..258334
                     /Source="Nicolas_upshift_promotors"
                     /id="U180"
                     /multdbtbs="SigA"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.869130869130869"
                     /psig=1
                     /xcortree=572
                     /SigmaFactorBS="gaagcacttggtgtaacatcggattaagAATTGACTtcgttt
                     catgaaccGAGTATTATAAACTCTACAAataatagaacggattaacaatcgtgaggaa
                     g"
                     /listShort="NA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    258349..258368
                     /Source="Nicolas_upshift_promotors"
                     /id="U180"
                     /multdbtbs="SigA"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.869130869130869"
                     /psig=1
                     /xcortree=572
                     /SigmaFactorBS="gaagcacttggtgtaacatcggattaagAATTGACTtcgttt
                     catgaaccGAGTATTATAAACTCTACAAataatagaacggattaacaatcgtgaggaa
                     g"
                     /listShort="NA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        258359
                     /Source="Nicolas_upshifts"
                     /id="U180"
                     /multdbtbs="SigA"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.869130869130869"
                     /psig=1
                     /xcortree=572
                     /SigmaFactorBS="gaagcacttggtgtaacatcggattaagAATTGACTtcgttt
                     catgaaccGAGTATTATAAACTCTACAAataatagaacggattaacaatcgtgaggaa
                     g"
                     /listShort="NA"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     misc_RNA        258382..258629
                     /gene="tboW"
                     /locus_tag="BSU_misc_RNA_6"
                     /product="T-box riboswitch specific of tryptophan tRNA
                     ligase"
                     /experiment="publication(s) with functional evidences,
                     PMID:1317842, 9098041, 10706627, 12165569, 12547201"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 1317842, 9098041,
                     10706627, 12165569, 12547201; Product type n: RNA"
                     /label="tboW RNA"
     gene            258382..258629
                     /gene="tboW"
                     /locus_tag="BSU_misc_RNA_6"
                     /label="tboW gene"
     downshifts      258598
                     /Source="Nicolas_upshifts"
                     /id="D98"
                     /incds=0
                     /nref=225
                     /ntot=264
                     /MaxReadThrough="2.36361"
                     /MaxDrop="6.52913"
                     /score="36.5571172"
                     /energy="-16.6"
                     /TU="NA"
                     /idTUdmin="U179"
                     /TUdmin="-3"
                     /isTUend="TRUE"
                     /label="downshifts"
     CDS             258727..258888
                     /gene="rtpA"
                     /locus_tag="BSU_02530"
                     /old_locus_tag="BSU02530"
                     /function="16.3: Control"
                     /experiment="publication(s) with functional evidences,
                     PMID:10706627, 11557884, 12855807, 15099736, 15213402,
                     15743934, 16306262"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 10706627, 11557884,
                     12855807, 15099736, 15213402, 15743934, 16306262; Product
                     type r: regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="anti-TRAP regulator"
                     /protein_id="NP_388135.1"
                     /db_xref="EnsemblGenomes-Gn:BSU02530"
                     /db_xref="EnsemblGenomes-Tr:CAB12047"
                     /db_xref="GOA:O31466"
                     /db_xref="InterPro:IPR031538"
                     /db_xref="InterPro:IPR036410"
                     /db_xref="PDB:2BX9"
                     /db_xref="PDB:2KO8"
                     /db_xref="PDB:2ZP8"
                     /db_xref="PDB:2ZP9"
                     /db_xref="SubtiList:BG12776"
                     /db_xref="UniProtKB/Swiss-Prot:O31466"
                     /translation="MVIATDDLEVACPKCERAGEIEGTPCPACSGKGVILTAQGYTLL
                     DFIQKHLNK*"
                     /label="rtpA CDS"
     gene            258727..258888
                     /gene="rtpA"
                     /locus_tag="BSU_02530"
                     /old_locus_tag="BSU02530"
                     /label="rtpA gene"
     promotor_no_box 258805..258905
                     /Source="Nicolas_upshift_promotors"
                     /id="U181"
                     /multdbtbs="-"
                     /comp="M21"
                     /sig="Sig-"
                     /pcomp="0.544455544455544"
                     /psig="0.010989010989011"
                     /xcortree=1479
                     /SigmaFactorBS="ccggcctgcagcggaaaaggtgttattctgactgctcaagga
                     tatacgcttctcgattttatccaaaagcatttgaataagtaaaggagaaaagctgagc
                     t"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_no_box"
     upshifts        258865
                     /Source="Nicolas_upshifts"
                     /id="U181"
                     /multdbtbs="-"
                     /comp="M21"
                     /sig="Sig-"
                     /pcomp="0.544455544455544"
                     /psig="0.010989010989011"
                     /xcortree=1479
                     /SigmaFactorBS="ccggcctgcagcggaaaaggtgttattctgactgctcaagga
                     tatacgcttctcgattttatccaaaagcatttgaataagtaaaggagaaaagctgagc
                     t"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             258909..259847
                     /gene="ycbK"
                     /locus_tag="BSU_02540"
                     /old_locus_tag="BSU02540"
                     /function="16.1: Circulate"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 10706627, 15063849,
                     15849754, 16850406, 16879415, 17114263; Product type t :
                     transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="putative tryptophan or indole exporter"
                     /protein_id="NP_388136.1"
                     /db_xref="EnsemblGenomes-Gn:BSU02540"
                     /db_xref="EnsemblGenomes-Tr:CAB12048"
                     /db_xref="GOA:P42243"
                     /db_xref="InterPro:IPR000620"
                     /db_xref="SubtiList:BG11166"
                     /db_xref="UniProtKB/Swiss-Prot:P42243"
                     /translation="MRAEEQSKIREAAAGTIFLLIGTVCFASKSIWIKWAYQMGAEPD
                     AVLLYRQLLAVPLFWLIFLIYRPPMPDGKKKGDLWKACGAGVFCFFLSPLLDFIGLNH
                     VSAMVERILLMSYPLFVFGFTACRDRKMSSIQDLFAVLAVMFGLFLALGGWNAELFQA
                     NMIGAVFILLSSAVYAGYLVLSGHLVHQIGGIRLNAYGMTAAGAAMMLYTGIKSAAGM
                     NTPMAAYPLSMYGLFAVIAVVTTVIPFVLMLEGIKRIGAQRAAAISMAGPILTIFYGA
                     LFLGERLGLIQVIGCGGVFFVITGMEYRKLKTGKKE*"
                     /label="ycbK CDS"
     gene            258909..259847
                     /gene="ycbK"
                     /locus_tag="BSU_02540"
                     /old_locus_tag="BSU02540"
                     /label="ycbK gene"
     downshifts      258953
                     /Source="Nicolas_upshifts"
                     /id="D99"
                     /incds=0
                     /nref=1
                     /ntot=7
                     /MaxReadThrough="3.05417"
                     /MaxDrop="3.72787"
                     /score="0.773303272"
                     /energy="-9"
                     /TU="NA"
                     /idTUdmin="U181"
                     /TUdmin=0
                     /isTUend="TRUE"
                     /label="downshifts"
     misc_feature    259870..259889
                     /Source="Nicolas_upshift_promotors"
                     /id="U182"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.699300699300699"
                     /psig="0.998001998001998"
                     /xcortree=2265
                     /SigmaFactorBS="tacaggaagctgaaaacaggaaaaaaagaataatttttataa
                     aacacacacgtttTTCAATTACAATAAGTGTAAttacgtgtgtgttttttgattttgt
                     a"
                     /listShort="S96, ycbL, ycbM"
                     /GFF_Attribute="listLong"
                     /label="promotor_single_box"
                     /note="Geneious type: promotor_single_box"
     S_feature       259875..259943
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_278308_278376"
                     /HighExp="C90, dia5, Lbtran, Lbexp, LBGexp, SMM, dia0,
                     dia15, BMM, T-3.40H"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.998"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S96"
     upshifts        259875
                     /Source="Nicolas_upshifts"
                     /id="U182"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.699300699300699"
                     /psig="0.998001998001998"
                     /xcortree=2265
                     /SigmaFactorBS="tacaggaagctgaaaacaggaaaaaaagaataatttttataa
                     aacacacacgtttTTCAATTACAATAAGTGTAAttacgtgtgtgttttttgattttgt
                     a"
                     /listShort="S96, ycbL, ycbM"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             259944..260624
                     /gene="ycbL"
                     /locus_tag="BSU_02550"
                     /old_locus_tag="BSU02550"
                     /function="16.3: Control"
                     /experiment="publication(s) with functional evidences,
                     PMID:11717295"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 11717295; Product type r:
                     regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="two-component response regulator [YcbM]"
                     /protein_id="NP_388137.2"
                     /db_xref="EnsemblGenomes-Gn:BSU02550"
                     /db_xref="EnsemblGenomes-Tr:CAB12049"
                     /db_xref="GOA:P42244"
                     /db_xref="InterPro:IPR001789"
                     /db_xref="InterPro:IPR001867"
                     /db_xref="InterPro:IPR011006"
                     /db_xref="InterPro:IPR016032"
                     /db_xref="InterPro:IPR036388"
                     /db_xref="SubtiList:BG11167"
                     /db_xref="UniProtKB/Swiss-Prot:P42244"
                     /translation="MLVEDDHSISEMVDHYLTKEGFGIVHAFDGEEGIRLFQQGSYDL
                     VLLDIMLPKLNGMDFLKIIREKSNIPVLMISAKDGDVDKALGLGFGADDYIAKPFSMI
                     ELTARVKAAIRRATQYSAEEPAVNKVIRIHQLAIDIDNVSVLKNGEPLQLTSTEWQLL
                     CLFASNPKKVFTKEQIYRSVWNEEYFDDQNIINVHMRRLREKIEDDPSSPQYIKTLWG
                     IGYKLGEF*"
                     /label="ycbL CDS"
     gene            259944..260624
                     /gene="ycbL"
                     /locus_tag="BSU_02550"
                     /old_locus_tag="BSU02550"
                     /label="ycbL gene"
     CDS             260626..261561
                     /gene="ycbM"
                     /locus_tag="BSU_02560"
                     /old_locus_tag="BSU02560"
                     /function="16.3: Control"
                     /function="16.12: Sense"
                     /experiment="publication(s) with functional evidences,
                     PMID:11717295"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 11717295; Product type
                     rc: receptor"
                     /codon_start=1
                     /transl_table=11
                     /product="two-component sensor histidine kinase [YcbL]"
                     /protein_id="NP_388138.2"
                     /db_xref="EnsemblGenomes-Gn:BSU02560"
                     /db_xref="EnsemblGenomes-Tr:CAB12050"
                     /db_xref="GOA:P42245"
                     /db_xref="InterPro:IPR003594"
                     /db_xref="InterPro:IPR003661"
                     /db_xref="InterPro:IPR004358"
                     /db_xref="InterPro:IPR005467"
                     /db_xref="InterPro:IPR036097"
                     /db_xref="InterPro:IPR036890"
                     /db_xref="SubtiList:BG11168"
                     /db_xref="UniProtKB/Swiss-Prot:P42245"
                     /translation="MTVLWVAAVIALACLNVIQFIMKKKRDGNLAYTADQLSYMLSRD
                     SAGQILLPTDDHALKDLLVNINLIVENRQQISAQFAKTEQSMKRMLTNMSHDLKTPLT
                     VILGYIEAIQSDPNMPDEERERLLGKLRQKTNELIQMINSFFDLAKLESEDKEIPITK
                     VHMNDICKRNILHYYDAVQSKGFQAAIDIPDTPVYAQANEEALDRILQNLLSNAIQYG
                     AAGKLIGLTLSYDERNIAITVWDRGKGISETDQQRVFERLYTLEESRNKAFQGSGLGL
                     TITKRLTEKMGGIISVQSKPYERTAFTITLKRMTY*"
                     /label="ycbM CDS"
     gene            260626..261561
                     /gene="ycbM"
                     /locus_tag="BSU_02560"
                     /old_locus_tag="BSU02560"
                     /label="ycbM gene"
     CDS             261653..262576
                     /gene="ycbN"
                     /locus_tag="BSU_02570"
                     /old_locus_tag="BSU02570"
                     /function="16.1: Circulate"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 12486040; Product type
                     t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="putative ABC efflux transporter (ATP-binding
                     protein)"
                     /protein_id="NP_388139.2"
                     /db_xref="EnsemblGenomes-Gn:BSU02570"
                     /db_xref="EnsemblGenomes-Tr:CAB12051"
                     /db_xref="GOA:P42246"
                     /db_xref="InterPro:IPR003439"
                     /db_xref="InterPro:IPR003593"
                     /db_xref="InterPro:IPR017871"
                     /db_xref="InterPro:IPR027417"
                     /db_xref="SubtiList:BG11169"
                     /db_xref="UniProtKB/Swiss-Prot:P42246"
                     /translation="MTYIVQTNGLTKTYQGKEVVSNVSMHIKKGEIYGFLGPNGAGKT
                     TIMKMLTSLVKPTSGEIIILGNKFTHTSYEVLGNIGSMIEYPIFYENLTAEENLDLHC
                     EYMGYHNKKAIQEVLDMVNLKQIDKKPVKTFSLGMKQRLGIARAILTKPDLLILDEPV
                     NGLDPLGIKKIRQLFQVLSKEYGMTLLISSHLLGEIEQIADTIGVIRDGRLLEEVSME
                     DVRGQNTEYIELVTPNQTRACFVLEKELQLTNFKILNEKTIRIYEAEASQAAISKALI
                     LNDVDIESMNKKYTSLEDYFIKLINGNSISA*"
                     /label="ycbN CDS"
     gene            261653..262576
                     /gene="ycbN"
                     /locus_tag="BSU_02570"
                     /old_locus_tag="BSU02570"
                     /label="ycbN gene"
     S_feature       complement(262123..263307)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_280556_281740_c"
                     /HighExp="Etha, Sw, Gly, B36, LoTm, B60, GM 150, Salt,
                     C30, ferm"
                     /AntisenseName="ycbO"
                     /AntisenseCor="-0.38911425676406203"
                     /AntisenseRegPval="-10.4"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigB"
                     /TUshortPSig="0.999"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S97"
     CDS             262595..263281
                     /gene="ycbO"
                     /locus_tag="BSU_02580"
                     /old_locus_tag="BSU02580"
                     /function="16.1: Circulate"
                     /function="16.6: Maintain"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 15849754, 16850406;
                     Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="putative Na+-driven exporter"
                     /protein_id="NP_388140.3"
                     /db_xref="EnsemblGenomes-Gn:BSU02580"
                     /db_xref="EnsemblGenomes-Tr:CAB12052"
                     /db_xref="GOA:P42247"
                     /db_xref="InterPro:IPR032688"
                     /db_xref="SubtiList:BG11170"
                     /db_xref="UniProtKB/Swiss-Prot:P42247"
                     /translation="MNLIRIELRKMKMGWYIRGALIANVIIMGFMWLISYSEKADGGV
                     SFQSTDEAFLIIGTFVRAVFIVFGAVLIVKLVISEYKNKTILVMFTYPISRKKLLTAK
                     LMIAGGLTFITILLSNILIAAGFFWLNSICHFIPGELTSEIISQQAVKMAVFAFGAAG
                     TSLVPIFFGMRRHSVPATIISSVVIVMLISSTSPGFSISSVVYIPLSLAAFGLFFSYM
                     AIRNADKQDA*"
                     /label="ycbO CDS"
     gene            262595..263281
                     /gene="ycbO"
                     /locus_tag="BSU_02580"
                     /old_locus_tag="BSU02580"
                     /label="ycbO gene"
     CDS             complement(263242..263376)
                     /locus_tag="BSU_02585"
                     /old_locus_tag="BSU02585"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 5: Unknown function"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_009513940.1"
                     /translation="MARSIILKQEQTHNGKAGADSIGLLYILGAFVYASCLSAFLIAM
                     *"
                     /label="hypothetical protein CDS"
     gene            complement(263242..263376)
                     /locus_tag="BSU_02585"
                     /old_locus_tag="BSU02585"
                     /label="gene"
     downshifts      263276
                     /Source="Nicolas_upshifts"
                     /id="D100"
                     /incds=0
                     /nref=8
                     /ntot=120
                     /MaxReadThrough="1.13131"
                     /MaxDrop="3.44039"
                     /score="18.1873505"
                     /energy="-11.4"
                     /TU="NA"
                     /idTUdmin="U184"
                     /TUdmin="-1166"
                     /isTUend="FALSE"
                     /label="downshifts"
     CDS             complement(263336..263722)
                     /gene="ycbP"
                     /locus_tag="BSU_02590"
                     /old_locus_tag="BSU02590"
                     /function="16.13: Shape"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 15849754, 16850406,
                     22582280; Product type m: membrane component"
                     /codon_start=1
                     /transl_table=11
                     /product="putative inner integral membrane protein"
                     /protein_id="NP_388141.1"
                     /db_xref="EnsemblGenomes-Gn:BSU02590"
                     /db_xref="EnsemblGenomes-Tr:CAB12053"
                     /db_xref="GOA:P42248"
                     /db_xref="InterPro:IPR019649"
                     /db_xref="SubtiList:BG11171"
                     /db_xref="UniProtKB/Swiss-Prot:P42248"
                     /translation="MTHVKALAIKGIMTIIVLYLVLGLGFGFTFGDTLLMTIVLGVIS
                     YLLGDLYVLPKWNNMIATLADFGLAFLVIWLMGMPLSMGMTGGEVALAALFGAIVMAI
                     GEYCFHFYMMSKEIGKKHYLETRTDS*"
                     /label="ycbP CDS"
     gene            complement(263336..263722)
                     /gene="ycbP"
                     /locus_tag="BSU_02590"
                     /old_locus_tag="BSU02590"
                     /label="ycbP gene"
     downshifts      complement(263352)
                     /Source="Nicolas_upshifts"
                     /id="D101"
                     /incds=0
                     /nref=148
                     /ntot=217
                     /MaxReadThrough="6.64196"
                     /MaxDrop="7.40353"
                     /score="13.8182557"
                     /energy="-15.6"
                     /TU="U183"
                     /idTUdmin="U185"
                     /TUdmin=0
                     /isTUend="TRUE"
                     /label="downshifts"
     promotor_-10    complement(263748..263766)
                     /Source="Nicolas_upshift_promotors"
                     /id="U183"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp="0.999000999001"
                     /psig="0.999000999001"
                     /xcortree=164
                     /SigmaFactorBS="ctctccccagcagatttgcacccgcctccgaaaagaaataaG
                     GTTTAActttttacatttgAGGAATTATACATAACAAAtcaaatgacaaaaggaggaa
                     t"
                     /listShort="ycbP, S97"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(263767)
                     /Source="Nicolas_upshifts"
                     /id="U183"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp="0.999000999001"
                     /psig="0.999000999001"
                     /xcortree=164
                     /SigmaFactorBS="ctctccccagcagatttgcacccgcctccgaaaagaaataaG
                     GTTTAActttttacatttgAGGAATTATACATAACAAAtcaaatgacaaaaggaggaa
                     t"
                     /listShort="ycbP, S97"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(263780..263786)
                     /Source="Nicolas_upshift_promotors"
                     /id="U183"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp="0.999000999001"
                     /psig="0.999000999001"
                     /xcortree=164
                     /SigmaFactorBS="ctctccccagcagatttgcacccgcctccgaaaagaaataaG
                     GTTTAActttttacatttgAGGAATTATACATAACAAAtcaaatgacaaaaggaggaa
                     t"
                     /listShort="ycbP, S97"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     S_feature       complement(263800..264798)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_282233_283231_c"
                     /HighExp="GM 150, T0.30H, C30, T1.30H, T1.0H, T-0.40H,
                     T-3.40H, T2.0H, T2.30H, T-4.40H"
                     /AntisenseName="cwlJ"
                     /AntisenseCor="0.11463160303596701"
                     /AntisenseRegPval="-1.2"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.975"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S98"
     downshifts      complement(263843)
                     /Source="Nicolas_upshifts"
                     /id="D102"
                     /incds=0
                     /nref=3
                     /ntot=10
                     /MaxReadThrough="5.23914"
                     /MaxDrop="3.14515"
                     /score="13.8182557"
                     /energy="-15.6"
                     /TU="U185,U187"
                     /idTUdmin="U185"
                     /TUdmin="-491"
                     /isTUend="FALSE"
                     /label="downshifts"
     promotor_-35    263979..263984
                     /Source="Nicolas_upshift_promotors"
                     /id="U184"
                     /multdbtbs="SigE"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.986013986013986"
                     /psig="0.986013986013986"
                     /xcortree=1108
                     /SigmaFactorBS="gtttttagatgaataaatttaaaaacttctcctgtccctccG
                     TCATCacttctgaagtaatgAAATATGATGAAAAGAGATcaaggggaggtgacgtgat
                     g"
                     /listShort="cwlJ"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     upshifts        263998
                     /Source="Nicolas_upshifts"
                     /id="U184"
                     /multdbtbs="SigE"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.986013986013986"
                     /psig="0.986013986013986"
                     /xcortree=1108
                     /SigmaFactorBS="gtttttagatgaataaatttaaaaacttctcctgtccctccG
                     TCATCacttctgaagtaatgAAATATGATGAAAAGAGATcaaggggaggtgacgtgat
                     g"
                     /listShort="cwlJ"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-10    264000..264018
                     /Source="Nicolas_upshift_promotors"
                     /id="U184"
                     /multdbtbs="SigE"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.986013986013986"
                     /psig="0.986013986013986"
                     /xcortree=1108
                     /SigmaFactorBS="gtttttagatgaataaatttaaaaacttctcctgtccctccG
                     TCATCacttctgaagtaatgAAATATGATGAAAAGAGATcaaggggaggtgacgtgat
                     g"
                     /listShort="cwlJ"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(264012)
                     /Source="Nicolas_upshifts"
                     /id="U185"
                     /multdbtbs="-"
                     /comp="M15"
                     /sig="Sig-"
                     /pcomp="0.999000999001"
                     /psig=0
                     /xcortree=680
                     /SigmaFactorBS="aatcgacatccgcactcgttgctctcacgaccGCCATcacgt
                     caCCTCCCCTTGATCTCttttcatcatatttcattacttcagaagtgatgacggaggg
                     a"
                     /listShort="ycbP"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-10    complement(264014..264028)
                     /Source="Nicolas_upshift_promotors"
                     /id="U185"
                     /multdbtbs="-"
                     /comp="M15"
                     /sig="Sig-"
                     /pcomp="0.999000999001"
                     /psig=0
                     /xcortree=680
                     /SigmaFactorBS="aatcgacatccgcactcgttgctctcacgaccGCCATcacgt
                     caCCTCCCCTTGATCTCttttcatcatatttcattacttcagaagtgatgacggaggg
                     a"
                     /listShort="ycbP"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     downshifts      complement(264034)
                     /Source="Nicolas_upshifts"
                     /id="D103"
                     /incds=0
                     /nref=2
                     /ntot=5
                     /MaxReadThrough="5.64474"
                     /MaxDrop="3.76775"
                     /score="13.8182557"
                     /energy="-15.6"
                     /TU="U187"
                     /idTUdmin="U185"
                     /TUdmin="-682"
                     /isTUend="FALSE"
                     /label="downshifts"
     promotor_-35    complement(264036..264040)
                     /Source="Nicolas_upshift_promotors"
                     /id="U185"
                     /multdbtbs="-"
                     /comp="M15"
                     /sig="Sig-"
                     /pcomp="0.999000999001"
                     /psig=0
                     /xcortree=680
                     /SigmaFactorBS="aatcgacatccgcactcgttgctctcacgaccGCCATcacgt
                     caCCTCCCCTTGATCTCttttcatcatatttcattacttcagaagtgatgacggaggg
                     a"
                     /listShort="ycbP"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             264036..264464
                     /gene="cwlJ"
                     /locus_tag="BSU_02600"
                     /old_locus_tag="BSU02600"
                     /function="16.5: Explore"
                     /function="16.3: Control"
                     /experiment="publication(s) with functional evidences,
                     PMID:9515903, 11466292, 11807087, 12177332, 16936016,
                     26190134, 28333204"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 9515903, 11466292,
                     11807087, 12177332, 16936016, 26190134, 28333204; Product
                     type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="spore cortex cell wall hydrolase"
                     /protein_id="NP_388142.2"
                     /db_xref="EnsemblGenomes-Gn:BSU02600"
                     /db_xref="EnsemblGenomes-Tr:CAB12054"
                     /db_xref="GOA:P42249"
                     /db_xref="InterPro:IPR011105"
                     /db_xref="SubtiList:BG11172"
                     /db_xref="UniProtKB/Swiss-Prot:P42249"
                     /translation="MAVVRATSADVDLMARLLRAEAEGEGKQGMLLVGNVGINRLRAN
                     CSDFKGLRTIRQMIYQPHAFEAVTHGYFYQRARDSERALARRSINGERRWPAKFSLWY
                     FRPQGDCPAQWYNQPFVARFKSHCFYQPTAETCENVYNTF*"
                     /label="cwlJ CDS"
     gene            264036..264464
                     /gene="cwlJ"
                     /locus_tag="BSU_02600"
                     /old_locus_tag="BSU02600"
                     /label="cwlJ gene"
     downshifts      264443
                     /Source="Nicolas_upshifts"
                     /id="D104"
                     /incds=0
                     /nref=44
                     /ntot=63
                     /MaxReadThrough="2.30044"
                     /MaxDrop="5.89045"
                     /score="18.1873505"
                     /energy="-11.4"
                     /TU="NA"
                     /idTUdmin="U184"
                     /TUdmin=1
                     /isTUend="TRUE"
                     /label="downshifts"
     promotor_-35    264509..264515
                     /Source="Nicolas_upshift_promotors"
                     /id="U186"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.535464535464535"
                     /psig="0.973026973026973"
                     /xcortree=1784
                     /SigmaFactorBS="ggacaccgttcaaattgaacggtgtttttctttgaaaagATG
                     CAATgcaaaatattccTGTGAGATAATCAAAGAAAAaagagctgacggagatgacaga
                     a"
                     /listShort="ycbR"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    264528..264547
                     /Source="Nicolas_upshift_promotors"
                     /id="U186"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.535464535464535"
                     /psig="0.973026973026973"
                     /xcortree=1784
                     /SigmaFactorBS="ggacaccgttcaaattgaacggtgtttttctttgaaaagATG
                     CAATgcaaaatattccTGTGAGATAATCAAAGAAAAaagagctgacggagatgacaga
                     a"
                     /listShort="ycbR"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        264530
                     /Source="Nicolas_upshifts"
                     /id="U186"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.535464535464535"
                     /psig="0.973026973026973"
                     /xcortree=1784
                     /SigmaFactorBS="ggacaccgttcaaattgaacggtgtttttctttgaaaagATG
                     CAATgcaaaatattccTGTGAGATAATCAAAGAAAAaagagctgacggagatgacaga
                     a"
                     /listShort="ycbR"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             264570..265301
                     /gene="ycbR"
                     /locus_tag="BSU_02610"
                     /old_locus_tag="BSU02610"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved protein of unknown function"
                     /protein_id="NP_388143.2"
                     /db_xref="EnsemblGenomes-Gn:BSU02610"
                     /db_xref="EnsemblGenomes-Tr:CAB12055"
                     /db_xref="InterPro:IPR002035"
                     /db_xref="InterPro:IPR019303"
                     /db_xref="InterPro:IPR036465"
                     /db_xref="SubtiList:BG11173"
                     /db_xref="UniProtKB/Swiss-Prot:P42250"
                     /translation="MATIDLQKKSVKIVLEKKQLTKVTARVGLVLDITGSMRPLYKNG
                     TVQNVVERILAVADQFDDNGLLDVWVYDNEFSRLKPVSEKDFSGYVDREILNNDRLHK
                     FGRNDEPPVMKDVLRKYVTEEPSSYPAFIVFINDGGCKKSIKPIIEASSDKPVFWQFV
                     GIGNGNFDFLNKLDTLEGRVIDNTNFLHIEEIDRISDDELYDALLAEFPFWLKEAKEK
                     GIVREQEPPAEKPKKKGFFSRLFSK*"
                     /label="ycbR CDS"
     gene            264570..265301
                     /gene="ycbR"
                     /locus_tag="BSU_02610"
                     /old_locus_tag="BSU02610"
                     /label="ycbR gene"
     promotor_-10    complement(264772..264791)
                     /Source="Nicolas_upshift_promotors"
                     /id="U187"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.932067932067932"
                     /psig="0.975024975024975"
                     /xcortree=2967
                     /SigmaFactorBS="tatttaaaatttcacgatcgacatagcccgaaaaatcctttt
                     ctgaAACTGGCTttaatcgggaaaaTTCATTATCATACACCCATAcatccagcaaacc
                     g"
                     /listShort="S98, ycbP"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(264798)
                     /Source="Nicolas_upshifts"
                     /id="U187"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.932067932067932"
                     /psig="0.975024975024975"
                     /xcortree=2967
                     /SigmaFactorBS="tatttaaaatttcacgatcgacatagcccgaaaaatcctttt
                     ctgaAACTGGCTttaatcgggaaaaTTCATTATCATACACCCATAcatccagcaaacc
                     g"
                     /listShort="S98, ycbP"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(264805..264812)
                     /Source="Nicolas_upshift_promotors"
                     /id="U187"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.932067932067932"
                     /psig="0.975024975024975"
                     /xcortree=2967
                     /SigmaFactorBS="tatttaaaatttcacgatcgacatagcccgaaaaatcctttt
                     ctgaAACTGGCTttaatcgggaaaaTTCATTATCATACACCCATAcatccagcaaacc
                     g"
                     /listShort="S98, ycbP"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     downshifts      265219
                     /Source="Nicolas_upshifts"
                     /id="D105"
                     /incds=1
                     /nref=9
                     /ntot=148
                     /MaxReadThrough="1.70712"
                     /MaxDrop="3.61288"
                     /score="25.6672471"
                     /energy="-14.1"
                     /TU="NA"
                     /idTUdmin="U186"
                     /TUdmin=7
                     /isTUend="TRUE"
                     /label="downshifts"
     CDS             265383..265559
                     /gene="yczK"
                     /locus_tag="BSU_02619"
                     /old_locus_tag="BSU02619"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved protein of unknown function"
                     /protein_id="YP_003097673.1"
                     /db_xref="EnsemblGenomes-Gn:BSU02619"
                     /db_xref="EnsemblGenomes-Tr:CAX52543"
                     /db_xref="UniProtKB/Swiss-Prot:C0H3T2"
                     /translation="MGGLQTTGYAENASFSQLSACFSSRLVREDLFLMFSAYNQFTLL
                     HSRLTMISYNGDDQ*"
                     /label="yczK CDS"
     gene            265383..265559
                     /gene="yczK"
                     /locus_tag="BSU_02619"
                     /old_locus_tag="BSU02619"
                     /label="yczK gene"
     promotor_-35    265511..265517
                     /Source="Nicolas_upshift_promotors"
                     /id="U188"
                     /multdbtbs="SigA"
                     /comp="M6"
                     /sig="Sig-"
                     /pcomp="0.942057942057942"
                     /psig="0.056943056943057"
                     /xcortree=6
                     /SigmaFactorBS="gtttttaatgttcagcgcttacaatcagttcacactTCTTCA
                     CagtcgtTTAACAATGATTTCCTATaatggagacgatcaatgaggagagaggggatct
                     t"
                     /listShort="phoD, tatAD, S99, tatCD"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    265524..265541
                     /Source="Nicolas_upshift_promotors"
                     /id="U188"
                     /multdbtbs="SigA"
                     /comp="M6"
                     /sig="Sig-"
                     /pcomp="0.942057942057942"
                     /psig="0.056943056943057"
                     /xcortree=6
                     /SigmaFactorBS="gtttttaatgttcagcgcttacaatcagttcacactTCTTCA
                     CagtcgtTTAACAATGATTTCCTATaatggagacgatcaatgaggagagaggggatct
                     t"
                     /listShort="phoD, tatAD, S99, tatCD"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        265535
                     /Source="Nicolas_upshifts"
                     /id="U188"
                     /multdbtbs="SigA"
                     /comp="M6"
                     /sig="Sig-"
                     /pcomp="0.942057942057942"
                     /psig="0.056943056943057"
                     /xcortree=6
                     /SigmaFactorBS="gtttttaatgttcagcgcttacaatcagttcacactTCTTCA
                     CagtcgtTTAACAATGATTTCCTATaatggagacgatcaatgaggagagaggggatct
                     t"
                     /listShort="phoD, tatAD, S99, tatCD"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             265578..267329
                     /gene="phoD"
                     /locus_tag="BSU_02620"
                     /old_locus_tag="BSU02620"
                     /EC_number="3.1.4.46"
                     /function="16.11: Scavenge (Catabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:11719524, 12867413, 16698798, 19395490, 19616508,
                     21479178, 27780866"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 11719524, 12867413,
                     16698798, 19395490, 19616508, 21479178, 27780866; Product
                     type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="secreted phosphodiesterase (endo-hydrolysis at
                     non-specific sites throughout the cell wall teichoic acid
                     polymer)"
                     /protein_id="NP_388144.2"
                     /db_xref="EnsemblGenomes-Gn:BSU02620"
                     /db_xref="EnsemblGenomes-Tr:CAB12056"
                     /db_xref="GOA:P42251"
                     /db_xref="InterPro:IPR008963"
                     /db_xref="InterPro:IPR018946"
                     /db_xref="InterPro:IPR029052"
                     /db_xref="InterPro:IPR032093"
                     /db_xref="PDB:2YEQ"
                     /db_xref="SubtiList:BG11174"
                     /db_xref="UniProtKB/Swiss-Prot:P42251"
                     /translation="MAYDSRFDEWVQKLKEESFQNNTFDRRKFIQGAGKIAGLSLGLT
                     IAQSVGAFEVNAAPNFSSYPFTLGVASGDPLSDSVVLWTRLAPDPLNGGGMPKQAVPV
                     KWEVAKDEHFRKIVRKGTEMAKPSLAHSVHVEADGLEPNKVYYYRFKTGHELSPVGKT
                     KTLPAPGANVPQMTFAFASCQQYEHGYYTAYKHMAKEKLDLVFHLGDYIYEYGPNEYV
                     SKTGNVRTHNSAEIITLQDYRNRHAQYRSDANLKAAHAAFPWVVTWDDHEVENNYANK
                     IPEKGQSVEAFVLRRAAAYQAYYEHMPLRISSLPNGPDMQLYRHFTYGNLASFNVLDT
                     RQYRDDQANNDGNKPPSDESRNPNRTLLGKEQEQWLFNNLGSSTAHWNVLAQQIFFAK
                     WNFGTSASPIYSMDSWDGYPAQRERVINFIKSKNLNNVVVLTGDVHASWASNLHVDFE
                     KTSSKIFGAEFVGTSITSGGNGADKRADTDQILKENPHIQFFNDYRGYVRCTVTPHQW
                     KADYRVMPFVTEPGAAISTRASFVYQKDQTGLRKVSSTTIQGGVKQSDEVEEDRFFSH
                     NKAHEKQMIKKRAKITN*"
                     /label="phoD CDS"
     gene            265578..267329
                     /gene="phoD"
                     /locus_tag="BSU_02620"
                     /old_locus_tag="BSU02620"
                     /label="phoD gene"
     promotor_-10    complement(265632..265647)
                     /Source="Nicolas_upshift_promotors"
                     /id="U189"
                     /multdbtbs="-"
                     /comp="M9"
                     /sig="SigWXY"
                     /pcomp="0.875124875124875"
                     /psig="0.875124875124875"
                     /xcortree=1703
                     /SigmaFactorBS="gagaaagtcctgcaatcttccccgctcctTGAATAAATTtgc
                     ggcggtcaaACGTATTGTTTTGAAAgctttcctctttcagtttctgtacccattcatc
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(265638)
                     /Source="Nicolas_upshifts"
                     /id="U189"
                     /multdbtbs="-"
                     /comp="M9"
                     /sig="SigWXY"
                     /pcomp="0.875124875124875"
                     /psig="0.875124875124875"
                     /xcortree=1703
                     /SigmaFactorBS="gagaaagtcctgcaatcttccccgctcctTGAATAAATTtgc
                     ggcggtcaaACGTATTGTTTTGAAAgctttcctctttcagtttctgtacccattcatc
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(265660..265669)
                     /Source="Nicolas_upshift_promotors"
                     /id="U189"
                     /multdbtbs="-"
                     /comp="M9"
                     /sig="SigWXY"
                     /pcomp="0.875124875124875"
                     /psig="0.875124875124875"
                     /xcortree=1703
                     /SigmaFactorBS="gagaaagtcctgcaatcttccccgctcctTGAATAAATTtgc
                     ggcggtcaaACGTATTGTTTTGAAAgctttcctctttcagtttctgtacccattcatc
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             267342..267554
                     /gene="tatAD"
                     /locus_tag="BSU_02630"
                     /old_locus_tag="BSU02630"
                     /function="16.1: Circulate"
                     /experiment="publication(s) with functional evidences,
                     PMID:12867413, 15554971, 16678787, 19049517, 21479530,
                     27984091"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 12867413, 15554971,
                     16678787, 19049517, 21479530, 27984091; Product type t :
                     transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="component of the twin-arginine pre-protein
                     translocation pathway"
                     /protein_id="NP_388145.2"
                     /db_xref="EnsemblGenomes-Gn:BSU02630"
                     /db_xref="EnsemblGenomes-Tr:CAB12057"
                     /db_xref="GOA:O31467"
                     /db_xref="InterPro:IPR003369"
                     /db_xref="InterPro:IPR003998"
                     /db_xref="InterPro:IPR006312"
                     /db_xref="PDB:2L16"
                     /db_xref="SubtiList:BG12777"
                     /db_xref="UniProtKB/Swiss-Prot:O31467"
                     /translation="MFSNIGIPGLILIFVIALIIFGPSKLPEIGRAAGRTLLEFKSAT
                     KSLVSGDEKEEKSAELTAVKQDKNAG*"
                     /label="tatAD CDS"
     gene            267342..267554
                     /gene="tatAD"
                     /locus_tag="BSU_02630"
                     /old_locus_tag="BSU02630"
                     /label="tatAD gene"
     S_feature       267555..267614
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_285988_286047"
                     /HighExp="LPhT, BI, Paraq, C90, H2O2, M40t90, C30, M0t90,
                     GM 60, GM 120"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="Sig-"
                     /TUshortPSig="0.0569"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S99"
     CDS             267615..268343
                     /gene="tatCD"
                     /locus_tag="BSU_02640"
                     /old_locus_tag="BSU02640"
                     /function="16.1: Circulate"
                     /experiment="publication(s) with functional evidences,
                     PMID:16698798, 19049517, 27984091"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 16698798, 19049517,
                     27984091; Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="component of the twin-arginine pre-protein
                     translocation pathway"
                     /protein_id="NP_388146.2"
                     /db_xref="EnsemblGenomes-Gn:BSU02640"
                     /db_xref="EnsemblGenomes-Tr:CAB12058"
                     /db_xref="GOA:P42252"
                     /db_xref="InterPro:IPR002033"
                     /db_xref="InterPro:IPR019820"
                     /db_xref="SubtiList:BG11175"
                     /db_xref="UniProtKB/Swiss-Prot:P42252"
                     /translation="MDKKETHLIGHLEELRRRIIVTLAAFFLFLITAFLFVQDIYDWL
                     IRDLDGKLAVLGPSEILWVYMMLSGICAIAASIPVAAYQLWRFVAPALTKTERKVTLM
                     YIPGLFALFLAGISFGYFVLFPIVLSFLTHLSSGHFETMFTADRYFRFMVNLSLPFGF
                     LFEMPLVVMFLTRLGILNPYRLAKARKLSYFLLIVVSILITPPDFISDFLVMIPLLVL
                     FEVSVTLSAFVYKKRMREETAAAA*"
                     /label="tatCD CDS"
     gene            267615..268343
                     /gene="tatCD"
                     /locus_tag="BSU_02640"
                     /old_locus_tag="BSU02640"
                     /label="tatCD gene"
     downshifts      complement(267623)
                     /Source="Nicolas_upshifts"
                     /id="D106"
                     /incds=0
                     /nref=4
                     /ntot=146
                     /MaxReadThrough="1.2763"
                     /MaxDrop="3.13944"
                     /score="-9.00478071"
                     /energy="-8.5"
                     /TU="NA"
                     /idTUdmin="U190"
                     /TUdmin="-6"
                     /isTUend="TRUE"
                     /label="downshifts"
     CDS             complement(268340..268987)
                     /gene="pcp"
                     /locus_tag="BSU_02650"
                     /old_locus_tag="BSU02650"
                     /EC_number="3.4.19.3"
                     /function="16.6: Maintain"
                     /function="16.11: Scavenge (Catabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:1362573, 28830929"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 1362573, 28830929;
                     Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="pyrrolidone-carboxylate (pyroglutamate)
                     peptidase"
                     /protein_id="NP_388147.1"
                     /db_xref="EnsemblGenomes-Gn:BSU02650"
                     /db_xref="EnsemblGenomes-Tr:CAB12059"
                     /db_xref="GOA:P28618"
                     /db_xref="InterPro:IPR000816"
                     /db_xref="InterPro:IPR016125"
                     /db_xref="InterPro:IPR029762"
                     /db_xref="InterPro:IPR033693"
                     /db_xref="InterPro:IPR033694"
                     /db_xref="InterPro:IPR036440"
                     /db_xref="SubtiList:BG10873"
                     /db_xref="UniProtKB/Swiss-Prot:P28618"
                     /translation="MRKKVLITGFDPFDKETVNPSWEAAKRLNGFETEEAIITAEQIP
                     TVFRSALDTLRQAIQKHQPDIVICVGQAGGRMQITPERVAINLADARIPDNEGHQPID
                     EEISPDGPAAYWTRLPVKRMTAKMKEHGIPAAVSYTAGTFVCNYLFYGLMDHISRTSP
                     HIRGGFIHIPYIPQQTIDKTAPSLSLDTIVRALRIAAVTAAQYDEDVKSPGGTLH*"
                     /label="pcp CDS"
     gene            complement(268340..268987)
                     /gene="pcp"
                     /locus_tag="BSU_02650"
                     /old_locus_tag="BSU02650"
                     /label="pcp gene"
     promotor_-10    complement(269002..269021)
                     /Source="Nicolas_upshift_promotors"
                     /id="U190"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.487512487512487"
                     /psig="0.957042957042957"
                     /xcortree=559
                     /SigmaFactorBS="aaatgctccattatgattcactcctttacattatttTGATGa
                     aaaacccataaatAAACAATAGAATAAAAGAAAaaggagatgggagaatgagaaaaaa
                     a"
                     /listShort="pcp"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     promotor_-35    269015..269021
                     /Source="Nicolas_upshift_promotors"
                     /id="U191"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.603396603396603"
                     /psig="0.988011988011988"
                     /xcortree=2718
                     /SigmaFactorBS="tttttctcattctcccatctcctttttcttttattctATTGT
                     TTatttatgggtttttCATCAAAATAATGTAAAGGAgtgaatcataatggagcatttg
                     c"
                     /listShort="ycbU"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     upshifts        complement(269016)
                     /Source="Nicolas_upshifts"
                     /id="U190"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.487512487512487"
                     /psig="0.957042957042957"
                     /xcortree=559
                     /SigmaFactorBS="aaatgctccattatgattcactcctttacattatttTGATGa
                     aaaacccataaatAAACAATAGAATAAAAGAAAaaggagatgggagaatgagaaaaaa
                     a"
                     /listShort="pcp"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(269036..269040)
                     /Source="Nicolas_upshift_promotors"
                     /id="U190"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.487512487512487"
                     /psig="0.957042957042957"
                     /xcortree=559
                     /SigmaFactorBS="aaatgctccattatgattcactcctttacattatttTGATGa
                     aaaacccataaatAAACAATAGAATAAAAGAAAaaggagatgggagaatgagaaaaaa
                     a"
                     /listShort="pcp"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    269036..269055
                     /Source="Nicolas_upshift_promotors"
                     /id="U191"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.603396603396603"
                     /psig="0.988011988011988"
                     /xcortree=2718
                     /SigmaFactorBS="tttttctcattctcccatctcctttttcttttattctATTGT
                     TTatttatgggtttttCATCAAAATAATGTAAAGGAgtgaatcataatggagcatttg
                     c"
                     /listShort="ycbU"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        269038
                     /Source="Nicolas_upshifts"
                     /id="U191"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.603396603396603"
                     /psig="0.988011988011988"
                     /xcortree=2718
                     /SigmaFactorBS="tttttctcattctcccatctcctttttcttttattctATTGT
                     TTatttatgggtttttCATCAAAATAATGTAAAGGAgtgaatcataatggagcatttg
                     c"
                     /listShort="ycbU"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             269066..270178
                     /gene="ycbU"
                     /locus_tag="BSU_02660"
                     /old_locus_tag="BSU02660"
                     /function="16.2: Construct biomass (Anabolism)"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative lyase (PLP-dependent)"
                     /protein_id="NP_388148.2"
                     /db_xref="EnsemblGenomes-Gn:BSU02660"
                     /db_xref="EnsemblGenomes-Tr:CAB12060"
                     /db_xref="GOA:P42253"
                     /db_xref="InterPro:IPR000192"
                     /db_xref="InterPro:IPR015421"
                     /db_xref="InterPro:IPR015422"
                     /db_xref="InterPro:IPR015424"
                     /db_xref="InterPro:IPR020578"
                     /db_xref="SubtiList:BG11176"
                     /db_xref="UniProtKB/Swiss-Prot:P42253"
                     /translation="MEHLPEQYRQLFPTLQTHTMLASCSQSALAEPVSRAIQDYYDSL
                     LYKGTNWKEAIEKTEFARNEFAKLIGAEPDEVAIVPSVSDALVSVASSLTAFGKKHVV
                     YTDMDFPAVPHVWQAHSDYTVSVIPSIDGVLPLEQYETHISDETVLTCVPHVHYRDGY
                     VQDIKAIAEISQRKGSLLFVDAYQSAGHIPIDVKEWGVDMLAAGTRKYLLGIPGVAFL
                     YVRKELADALKPKASAWFGRESGFDGAYAKVARRFQTGTPAFISVYAAAAALSLLNHI
                     GVSHIRDHVKTICADAVQYAAEKGLQLAAAQGGIQPGMVAIRDERASETAGLLKKKKV
                     ICAPRENVIRLAPHFYNTKEEMRHAIDEIAAKTIHK*"
                     /label="ycbU CDS"
     gene            269066..270178
                     /gene="ycbU"
                     /locus_tag="BSU_02660"
                     /old_locus_tag="BSU02660"
                     /label="ycbU gene"
     upshifts        complement(269412)
                     /Source="Nicolas_upshifts"
                     /id="U192"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.954045954045954"
                     /psig="0.999000999001"
                     /xcortree=2851
                     /SigmaFactorBS="tcaagcggcagcacgccgTCTATtgatggaatgacggaTACG
                     GTATAATCGGAGTGTGcctgccaaacatgaggcaccgccggaaaatccatatctgtat
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-10    complement(269415..269434)
                     /Source="Nicolas_upshift_promotors"
                     /id="U192"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.954045954045954"
                     /psig="0.999000999001"
                     /xcortree=2851
                     /SigmaFactorBS="tcaagcggcagcacgccgTCTATtgatggaatgacggaTACG
                     GTATAATCGGAGTGTGcctgccaaacatgaggcaccgccggaaaatccatatctgtat
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     promotor_-35    complement(269450..269454)
                     /Source="Nicolas_upshift_promotors"
                     /id="U192"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.954045954045954"
                     /psig="0.999000999001"
                     /xcortree=2851
                     /SigmaFactorBS="tcaagcggcagcacgccgTCTATtgatggaatgacggaTACG
                     GTATAATCGGAGTGTGcctgccaaacatgaggcaccgccggaaaatccatatctgtat
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     downshifts      270172
                     /Source="Nicolas_upshifts"
                     /id="D107"
                     /incds=0
                     /nref=45
                     /ntot=226
                     /MaxReadThrough="1.10091"
                     /MaxDrop="4.52742"
                     /score="6.75687898"
                     /energy="-14"
                     /TU="NA"
                     /idTUdmin="U191"
                     /TUdmin=814
                     /isTUend="FALSE"
                     /label="downshifts"
     CDS             complement(270220..271659)
                     /gene="lmrB"
                     /locus_tag="BSU_02670"
                     /old_locus_tag="BSU02670"
                     /function="16.1: Circulate"
                     /function="16.8: Protect"
                     /experiment="publication(s) with functional evidences,
                     PMID:15317768, 15849754, 16850406, 17483215"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 15317768, 15849754,
                     16850406, 17483215; Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="flavonoid efflux transporter; drug-export
                     protein"
                     /protein_id="NP_388149.1"
                     /db_xref="EnsemblGenomes-Gn:BSU02670"
                     /db_xref="EnsemblGenomes-Tr:CAB12061"
                     /db_xref="GOA:O35018"
                     /db_xref="InterPro:IPR004638"
                     /db_xref="InterPro:IPR011701"
                     /db_xref="InterPro:IPR020846"
                     /db_xref="InterPro:IPR036259"
                     /db_xref="SubtiList:BG12613"
                     /db_xref="UniProtKB/Swiss-Prot:O35018"
                     /translation="MILETTAKASQQYKVMPIMISLLLAGFIGMFSETALNIALTDLM
                     KELNITAATVQWLTTGYLLVLGILVPVSGLLLQWFTTRQLFTVSLIFSILGTFIAALA
                     PSFSFLLAARIVQALGTGLLLPLMFNTILVIFPPHKRGAAMGTIGLVIMFAPAIGPTF
                     SGLVLEHLNWHWIFWISLPFLVLALVFGIAYMQNVSETTKPKIDVLSIILSTIGFGGI
                     VFGFSNAGEGSGGWSSPTVIVSLIVGVVGLILFSIRQLTMKQPMMNLRAFKYPMFILG
                     VIMVFICMMVILSSMLLLPMYLQGGLVLTAFASGLVLLPGGILNGFMSPVTGRLFDKY
                     GPKWLVIPGFVIVTVVLWFFSNVTTTSTAVLIIILHTCLMIGISMIMMPAQTNGLNQL
                     PREFYPDGTAIMNTLQQMAGAIGTAVAVSIMAAGQHDYMSTVKNPADPAVIPQALTAG
                     VQHAFVFAMIVAIIGLIGAFFMKRVKVDH*"
                     /label="lmrB CDS"
     gene            complement(270220..271659)
                     /gene="lmrB"
                     /locus_tag="BSU_02670"
                     /old_locus_tag="BSU02670"
                     /label="lmrB gene"
     downshifts      complement(270227)
                     /Source="Nicolas_upshifts"
                     /id="D108"
                     /incds=0
                     /nref=162
                     /ntot=245
                     /MaxReadThrough="0.65833"
                     /MaxDrop="6.75228"
                     /score="18.3484535"
                     /energy="-14"
                     /TU="U193"
                     /idTUdmin="U193"
                     /TUdmin="-23"
                     /isTUend="FALSE"
                     /label="downshifts"
     CDS             complement(271699..272265)
                     /gene="lmrA"
                     /locus_tag="BSU_02680"
                     /old_locus_tag="BSU02680"
                     /function="16.8: Protect"
                     /function="16.3: Control"
                     /experiment="publication(s) with functional evidences,
                     PMID:12718394, 15317768, 17483215"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 12718394, 15317768,
                     17483215; Product type r: regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional repressor of lmrAB and yxaGH
                     operons (flavonoid and antibiotic resistance)"
                     /protein_id="NP_388150.1"
                     /db_xref="EnsemblGenomes-Gn:BSU02680"
                     /db_xref="EnsemblGenomes-Tr:CAB12062"
                     /db_xref="GOA:O34619"
                     /db_xref="InterPro:IPR001647"
                     /db_xref="InterPro:IPR009057"
                     /db_xref="InterPro:IPR036271"
                     /db_xref="SubtiList:BG12612"
                     /db_xref="UniProtKB/Swiss-Prot:O34619"
                     /translation="MSYGDSREKILSAATRLFQLQGYYGTGLNQIIKESGAPKGSLYY
                     HFPGGKEQLAIEAVNEMKEYIRQKIADCMEACTDPAEGIQAFLKELSCQFSCTEDIEG
                     LPVGLLAAETSLKSEPLREACHEAYKEWASVYEEKLRQTGCSESRAKEASTVVNAMIE
                     GGILLSLTAKNSTPLLHISSCIPDLLKR*"
                     /label="lmrA CDS"
     gene            complement(271699..272265)
                     /gene="lmrA"
                     /locus_tag="BSU_02680"
                     /old_locus_tag="BSU02680"
                     /label="lmrA gene"
     promotor_-10    complement(272303..272322)
                     /Source="Nicolas_upshift_promotors"
                     /id="U193"
                     /multdbtbs="SigA"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.986013986013986"
                     /psig=1
                     /xcortree=2398
                     /SigmaFactorBS="cttctttttttgtcttttcatacaatgaattttTCTTGACAa
                     ttgatgattgaatCAAGATAATAGACCAGTCACtatatttttgattgcaattcagtaa
                     g"
                     /listShort="lmrA, lmrB"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(272317)
                     /Source="Nicolas_upshifts"
                     /id="U193"
                     /multdbtbs="SigA"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.986013986013986"
                     /psig=1
                     /xcortree=2398
                     /SigmaFactorBS="cttctttttttgtcttttcatacaatgaattttTCTTGACAa
                     ttgatgattgaatCAAGATAATAGACCAGTCACtatatttttgattgcaattcagtaa
                     g"
                     /listShort="lmrA, lmrB"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(272337..272344)
                     /Source="Nicolas_upshift_promotors"
                     /id="U193"
                     /multdbtbs="SigA"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.986013986013986"
                     /psig=1
                     /xcortree=2398
                     /SigmaFactorBS="cttctttttttgtcttttcatacaatgaattttTCTTGACAa
                     ttgatgattgaatCAAGATAATAGACCAGTCACtatatttttgattgcaattcagtaa
                     g"
                     /listShort="lmrA, lmrB"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-35    272419..272425
                     /Source="Nicolas_upshift_promotors"
                     /id="U194"
                     /multdbtbs="SigA"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.368631368631369"
                     /psig="0.652347652347652"
                     /xcortree=316
                     /SigmaFactorBS="acaaaaaatactgagagaaaagctgactgatcTTTTGACtga
                     atagataaaatgTACAATGATTAATCATCAtatggatgtaaggagagaaatagatgaa
                     a"
                     /listShort="ansZ"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    272441..272458
                     /Source="Nicolas_upshift_promotors"
                     /id="U194"
                     /multdbtbs="SigA"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.368631368631369"
                     /psig="0.652347652347652"
                     /xcortree=316
                     /SigmaFactorBS="acaaaaaatactgagagaaaagctgactgatcTTTTGACtga
                     atagataaaatgTACAATGATTAATCATCAtatggatgtaaggagagaaatagatgaa
                     a"
                     /listShort="ansZ"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        272447
                     /Source="Nicolas_upshifts"
                     /id="U194"
                     /multdbtbs="SigA"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.368631368631369"
                     /psig="0.652347652347652"
                     /xcortree=316
                     /SigmaFactorBS="acaaaaaatactgagagaaaagctgactgatcTTTTGACtga
                     atagataaaatgTACAATGATTAATCATCAtatggatgtaaggagagaaatagatgaa
                     a"
                     /listShort="ansZ"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             272482..273609
                     /gene="ansZ"
                     /locus_tag="BSU_02690"
                     /old_locus_tag="BSU02690"
                     /EC_number="3.5.1.1"
                     /function="16.6: Maintain"
                     /function="16.11: Scavenge (Catabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:11914346, 17686772"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 11914346, 17686772;
                     Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="L-asparaginase 2 (putative lipoprotein)"
                     /protein_id="NP_388151.1"
                     /db_xref="EnsemblGenomes-Gn:BSU02690"
                     /db_xref="EnsemblGenomes-Tr:CAB12063"
                     /db_xref="GOA:O34482"
                     /db_xref="InterPro:IPR004550"
                     /db_xref="InterPro:IPR006034"
                     /db_xref="InterPro:IPR020827"
                     /db_xref="InterPro:IPR027473"
                     /db_xref="InterPro:IPR027474"
                     /db_xref="InterPro:IPR027475"
                     /db_xref="InterPro:IPR036152"
                     /db_xref="InterPro:IPR037152"
                     /db_xref="SubtiList:BG12755"
                     /db_xref="UniProtKB/Swiss-Prot:O34482"
                     /translation="MKKQRMLVLFTALLFVFTGCSHSPETKESPKEKAQTQKVSSASA
                     SEKKDLPNIRILATGGTIAGADQSKTSTTEYKAGVVGVESLIEAVPEMKDIANVSGEQ
                     IVNVGSTNIDNKILLKLAKRINHLLASDDVDGIVVTHGTDTLEETAYFLNLTVKSDKP
                     VVIVGSMRPSTAISADGPSNLYNAVKVAGAPEAKGKGTLVVLNDRIASARYVTKTNTT
                     TTDTFKSEEMGFVGTIADDIYFNNEITRKHTKDTDFSVSNLDELPQVDIIYGYQNDGS
                     YLFDAAVKAGAKGIVFAGSGNGSLSDAAEKGADSAVKKGVTVVRSTRTGNGVVTPNQD
                     YAEKDLLASNSLNPQKARMLLMLALTKTNDPQKIQAYFNEY*"
                     /label="ansZ CDS"
     gene            272482..273609
                     /gene="ansZ"
                     /locus_tag="BSU_02690"
                     /old_locus_tag="BSU02690"
                     /label="ansZ gene"
     downshifts      273582
                     /Source="Nicolas_upshifts"
                     /id="D109"
                     /incds=0
                     /nref=3
                     /ntot=26
                     /MaxReadThrough="1.70459"
                     /MaxDrop="4.27333"
                     /score="23.2201078"
                     /energy="-7.6"
                     /TU="NA"
                     /idTUdmin="U194"
                     /TUdmin=0
                     /isTUend="TRUE"
                     /label="downshifts"
     promotor_-35    273706..273712
                     /Source="Nicolas_upshift_promotors"
                     /id="U195"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.455544455544456"
                     /psig=1
                     /xcortree=3077
                     /SigmaFactorBS="tctgaatcttaaaatttctttaaaaataagccaaaattacCC
                     TTTACttaattaatttggTAACGTAATATAATTGGAGAatttgttacaaaaaaaggag
                     g"
                     /listShort="estA, S100, yccF"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    273726..273745
                     /Source="Nicolas_upshift_promotors"
                     /id="U195"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.455544455544456"
                     /psig=1
                     /xcortree=3077
                     /SigmaFactorBS="tctgaatcttaaaatttctttaaaaataagccaaaattacCC
                     TTTACttaattaatttggTAACGTAATATAATTGGAGAatttgttacaaaaaaaggag
                     g"
                     /listShort="estA, S100, yccF"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        273726
                     /Source="Nicolas_upshifts"
                     /id="U195"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.455544455544456"
                     /psig=1
                     /xcortree=3077
                     /SigmaFactorBS="tctgaatcttaaaatttctttaaaaataagccaaaattacCC
                     TTTACttaattaatttggTAACGTAATATAATTGGAGAatttgttacaaaaaaaggag
                     g"
                     /listShort="estA, S100, yccF"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             273772..274410
                     /gene="estA"
                     /locus_tag="BSU_02700"
                     /old_locus_tag="BSU02700"
                     /EC_number="3.1.1.3"
                     /function="16.11: Scavenge (Catabolism)"
                     /function="16.8: Protect"
                     /experiment="publication(s) with functional evidences,
                     PMID:8396026, 15812018, 18053819, 11029590, 24827611,
                     28963005"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 8396026, 15812018,
                     18053819, 11029590, 24827611, 28963005; Product type e :
                     enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="secreted alkaliphilic lipase"
                     /protein_id="NP_388152.1"
                     /db_xref="EnsemblGenomes-Gn:BSU02700"
                     /db_xref="EnsemblGenomes-Tr:CAB12064"
                     /db_xref="GOA:P37957"
                     /db_xref="InterPro:IPR002918"
                     /db_xref="InterPro:IPR029058"
                     /db_xref="PDB:1I6W"
                     /db_xref="PDB:1ISP"
                     /db_xref="PDB:1R4Z"
                     /db_xref="PDB:1R50"
                     /db_xref="PDB:1T2N"
                     /db_xref="PDB:1T4M"
                     /db_xref="PDB:2QXT"
                     /db_xref="PDB:2QXU"
                     /db_xref="PDB:3D2A"
                     /db_xref="PDB:3D2B"
                     /db_xref="PDB:3D2C"
                     /db_xref="PDB:3QMM"
                     /db_xref="PDB:3QZU"
                     /db_xref="PDB:5CRI"
                     /db_xref="PDB:5CT4"
                     /db_xref="PDB:5CT5"
                     /db_xref="PDB:5CT6"
                     /db_xref="PDB:5CT8"
                     /db_xref="PDB:5CT9"
                     /db_xref="PDB:5CTA"
                     /db_xref="PDB:5CUR"
                     /db_xref="SubtiList:BG10679"
                     /db_xref="UniProtKB/Swiss-Prot:P37957"
                     /translation="MKFVKRRIIALVTILMLSVTSLFALQPSAKAAEHNPVVMVHGIG
                     GASFNFAGIKSYLVSQGWSRDKLYAVDFWDKTGTNYNNGPVLSRFVQKVLDETGAKKV
                     DIVAHSMGGANTLYYIKNLDGGNKVANVVTLGGANRLTTGKALPGTDPNQKILYTSIY
                     SSADMIVMNYLSRLDGARNVQIHGVGHIGLLYSSQVNSLIKEGLNGGGQNTN*"
                     /label="estA CDS"
     gene            273772..274410
                     /gene="estA"
                     /locus_tag="BSU_02700"
                     /old_locus_tag="BSU02700"
                     /label="estA gene"
     downshifts      274396
                     /Source="Nicolas_upshifts"
                     /id="D110"
                     /incds=0
                     /nref=15
                     /ntot=117
                     /MaxReadThrough="4.54554"
                     /MaxDrop="4.10395"
                     /score="23.2201078"
                     /energy="-7.6"
                     /TU="U195"
                     /idTUdmin="U194"
                     /TUdmin=814
                     /isTUend="FALSE"
                     /label="downshifts"
     S_feature       274441..275031
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_292874_293464"
                     /HighExp="M9-tran, GM 150, LoTm, MG 150, GM 120, aero,
                     T-1.40H, M/G, S2, GM 90"
                     /AntisenseName="yczC"
                     /AntisenseCor="3.5651747957185502E-2"
                     /AntisenseRegPval="-0.3"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig=1
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S100"
     CDS             complement(274448..274831)
                     /gene="yczC"
                     /locus_tag="BSU_02710"
                     /old_locus_tag="BSU02710"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms; PubMedId: 15849754, 16850406; Product type
                     m:membrane component"
                     /codon_start=1
                     /transl_table=11
                     /product="putative integral membrane protein of unknown
                     function"
                     /protein_id="NP_388153.1"
                     /db_xref="EnsemblGenomes-Gn:BSU02710"
                     /db_xref="EnsemblGenomes-Tr:CAB12065"
                     /db_xref="GOA:O31469"
                     /db_xref="InterPro:IPR010432"
                     /db_xref="SubtiList:BG12778"
                     /db_xref="UniProtKB/Swiss-Prot:O31469"
                     /translation="MELAGFMLRACALLLDVIIAAAVILAAGFTFGDGSAGVIIVAIL
                     MLIVYPLLMPLTNWKGTLGKKIIGLQIVRDETYKKISFPQAIVRYLIAWVHVFSRLIY
                     LTAAFTKKKQTVHDMAAKTIVLKAE*"
                     /label="yczC CDS"
     gene            complement(274448..274831)
                     /gene="yczC"
                     /locus_tag="BSU_02710"
                     /old_locus_tag="BSU02710"
                     /label="yczC gene"
     downshifts      complement(274472)
                     /Source="Nicolas_upshifts"
                     /id="D111"
                     /incds=0
                     /nref=4
                     /ntot=94
                     /MaxReadThrough="0.85389"
                     /MaxDrop="2.7858"
                     /score="15.0330092"
                     /energy="-12.1"
                     /TU="NA"
                     /idTUdmin="U196"
                     /TUdmin=0
                     /isTUend="TRUE"
                     /label="downshifts"
     Polymorphism    join(274645,274647)
                     /Source="geneious"
                     /ID="SNP_BsDelta6_293079_293079"
                     /Polymorphism_Type="SNP (transition)"
                     /note="SNP between marked nucleotides"
                     /strain="Bacillus subtilis Delta6"
                     /Length=1
                     /Amino_Acid_Change
                     /CDS_Position=186
                     /Change="C -> T"
                     /Codon_Change="CTG -> CTA"
                     /Coverage=154
                     /locus_tag="BSU_02710"
                     /Protein_Effect="None"
                     /Reference_Frequency
                     /Reference_Nucleotides="C"
                     /Variant_Nucleotides="T"
                     /Variant_P_Value=0
                     /Variant_Raw_Frequency=154
                     /comment="silent"
                     /modified_by="User"
                     /
                     /label="Polymorphism_Delta6"
     promotor_-10    complement(274861..274880)
                     /Source="Nicolas_upshift_promotors"
                     /id="U196"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.507492507492508"
                     /psig="0.835164835164835"
                     /xcortree=3082
                     /SigmaFactorBS="aacttttgtgatttaaggcttatcaccTATTCCCActttagg
                     cccttcTTTTTTACAATCATTAGGTGtttatttaacattttaaggagtgtttctattg
                     g"
                     /listShort="yczC"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(274868)
                     /Source="Nicolas_upshifts"
                     /id="U196"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.507492507492508"
                     /psig="0.835164835164835"
                     /xcortree=3082
                     /SigmaFactorBS="aacttttgtgatttaaggcttatcaccTATTCCCActttagg
                     cccttcTTTTTTACAATCATTAGGTGtttatttaacattttaaggagtgtttctattg
                     g"
                     /listShort="yczC"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(274894..274901)
                     /Source="Nicolas_upshift_promotors"
                     /id="U196"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.507492507492508"
                     /psig="0.835164835164835"
                     /xcortree=3082
                     /SigmaFactorBS="aacttttgtgatttaaggcttatcaccTATTCCCActttagg
                     cccttcTTTTTTACAATCATTAGGTGtttatttaacattttaaggagtgtttctattg
                     g"
                     /listShort="yczC"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-35    275003..275006
                     /Source="Nicolas_upshift_promotors"
                     /id="U197"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.916083916083916"
                     /psig="0.999000999001"
                     /xcortree=2575
                     /SigmaFactorBS="acattaccaaattcttttttagcccgaaacCAAGccctcaga
                     agttattTTTGTTAAAATAGAAAAGTTacaacagaattcggagggtttattgtgggaa
                     a"
                     /listShort="yccF"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    275022..275041
                     /Source="Nicolas_upshift_promotors"
                     /id="U197"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.916083916083916"
                     /psig="0.999000999001"
                     /xcortree=2575
                     /SigmaFactorBS="acattaccaaattcttttttagcccgaaacCAAGccctcaga
                     agttattTTTGTTAAAATAGAAAAGTTacaacagaattcggagggtttattgtgggaa
                     a"
                     /listShort="yccF"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        275033
                     /Source="Nicolas_upshifts"
                     /id="U197"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.916083916083916"
                     /psig="0.999000999001"
                     /xcortree=2575
                     /SigmaFactorBS="acattaccaaattcttttttagcccgaaacCAAGccctcaga
                     agttattTTTGTTAAAATAGAAAAGTTacaacagaattcggagggtttattgtgggaa
                     a"
                     /listShort="yccF"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             275066..276142
                     /gene="yccF"
                     /locus_tag="BSU_02720"
                     /old_locus_tag="BSU02720"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved protein of unknown function"
                     /protein_id="NP_388154.1"
                     /db_xref="EnsemblGenomes-Gn:BSU02720"
                     /db_xref="EnsemblGenomes-Tr:CAB12066"
                     /db_xref="GOA:O34478"
                     /db_xref="InterPro:IPR004027"
                     /db_xref="InterPro:IPR007889"
                     /db_xref="InterPro:IPR036915"
                     /db_xref="SubtiList:BG12756"
                     /db_xref="UniProtKB/Swiss-Prot:O34478"
                     /translation="MGKVKRNAPCPCGSGKKYKKCCGSKVVDFPAELAAKEAKQIQED
                     LVEYAFTVHRESISGFINQHDFLSAMDRQTKDISVFNLGIWGIFFHPLAGEKTIFEEY
                     LQKKGDSITRPKTREIVESWQSMTPALLLLKDLKEGIIHFEDVITAKQFEVEMDASNQ
                     DLPPVGSLILGYPIHEAEKAEFFMQFTIFPVKRTEALISKVKKYADAAVKDGKTPEDF
                     MKQEFNNVLFALLAEKDEEPQAEKAEVSTVEWANDLEKETAAAIEEGMSGEEYPTELI
                     PAVIDIWKTFCEKKSPVIRKPEAFAAAVEYYVNAISLNGASVSQAKLAKKYGVSASTI
                     SSRYKEIESTLQDEADRFAQALSS*"
                     /label="yccF CDS"
     gene            275066..276142
                     /gene="yccF"
                     /locus_tag="BSU_02720"
                     /old_locus_tag="BSU02720"
                     /label="yccF gene"
     downshifts      276136
                     /Source="Nicolas_upshifts"
                     /id="D112"
                     /incds=0
                     /nref=60
                     /ntot=248
                     /MaxReadThrough="1.55048"
                     /MaxDrop="5.18328"
                     /score="33.0000484"
                     /energy="-12.9"
                     /TU="NA"
                     /idTUdmin="U197"
                     /TUdmin=2
                     /isTUend="TRUE"
                     /label="downshifts"
     CDS             complement(276182..277138)
                     /gene="natK"
                     /locus_tag="BSU_02730"
                     /old_locus_tag="BSU02730"
                     /function="16.3: Control"
                     /function="16.12: Sense"
                     /experiment="publication(s) with functional evidences,
                     PMID:11717295, 17322186"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 11717295, 17322186;
                     Product type rc: receptor"
                     /codon_start=1
                     /transl_table=11
                     /product="two-component sensor histidine kinase [NatR]"
                     /protein_id="NP_388155.1"
                     /db_xref="EnsemblGenomes-Gn:BSU02730"
                     /db_xref="EnsemblGenomes-Tr:CAB12067"
                     /db_xref="GOA:P70954"
                     /db_xref="InterPro:IPR003594"
                     /db_xref="InterPro:IPR032834"
                     /db_xref="InterPro:IPR036890"
                     /db_xref="SubtiList:BG11997"
                     /db_xref="UniProtKB/Swiss-Prot:P70954"
                     /translation="MITLFQCLYLILFSFICYQGAAAFSHSTAASWLAAALGAAAAGL
                     YIWNTKRVWKHCSSGLCAWIAVIQVMSVGVVLIGTDIMPVLCVIAIFAGCEGLRIGQS
                     ALQARLSDQIDKLTQAEQHANQMLIDVRSRNHDTMKHITAIKSAQPKADTQAYIQNWA
                     DQYSQYDRFLKGENAYVAGVLYDFLEKARASNVSVSLHMHTPLSSLPFSPADQVSLVG
                     NILENALDSAAEAREKAEIKLETSLRSGLYVLTCENSTPGMDPKVLDTIYQSFGRSTK
                     NGAHEGMGTYIIQKLVKGAFGRLDFTYRHPIFRLEIKIPFQK*"
                     /label="natK CDS"
     gene            complement(276182..277138)
                     /gene="natK"
                     /locus_tag="BSU_02730"
                     /old_locus_tag="BSU02730"
                     /label="natK gene"
     downshifts      complement(276210)
                     /Source="Nicolas_upshifts"
                     /id="D113"
                     /incds=0
                     /nref=1
                     /ntot=129
                     /MaxReadThrough="0.86926"
                     /MaxDrop="2.67125"
                     /score="14.02819"
                     /energy="-12.9"
                     /TU="NA"
                     /idTUdmin="U198"
                     /TUdmin=176
                     /isTUend="FALSE"
                     /label="downshifts"
     CDS             complement(277151..277852)
                     /gene="natR"
                     /locus_tag="BSU_02740"
                     /old_locus_tag="BSU02740"
                     /function="16.8: Protect"
                     /function="16.3: Control"
                     /experiment="publication(s) with functional evidences,
                     PMID:11717295, 17322186"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 11717295, 17322186;
                     Product type r: regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="two-component response regulator [NatK]"
                     /protein_id="NP_388156.1"
                     /db_xref="EnsemblGenomes-Gn:BSU02740"
                     /db_xref="EnsemblGenomes-Tr:CAB12068"
                     /db_xref="GOA:P70955"
                     /db_xref="InterPro:IPR001789"
                     /db_xref="InterPro:IPR007492"
                     /db_xref="InterPro:IPR011006"
                     /db_xref="SubtiList:BG11998"
                     /db_xref="UniProtKB/Swiss-Prot:P70955"
                     /translation="MVKVGLVDDYRVDLEKLEAIVSRMQDVEIVFSTDSAKEAYRRVK
                     NGDIDLLLADIEMPHMSGYELADLIKSHSLDVDVIFVTGHGGYAVHAFDLNVHDYIMK
                     PYYADRLAASFDRYLKKKTETSLNGRILIKQKSEMHVLQKKDIIFAERTGRSTTIVTT
                     AEEVQTYQTLNDIKGDLPEKDFLRSHRSFIINIHYIKHFSAYTKHSFTVSFEGTSKKA
                     MITKQQLDYFQNYYF*"
                     /label="natR CDS"
     gene            complement(277151..277852)
                     /gene="natR"
                     /locus_tag="BSU_02740"
                     /old_locus_tag="BSU02740"
                     /label="natR gene"
     promotor_-10    complement(277876..277895)
                     /Source="Nicolas_upshift_promotors"
                     /id="U198"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.397602397602398"
                     /psig="0.992007992007992"
                     /xcortree=2173
                     /SigmaFactorBS="attagttggataaagttgtcgcgaagagTTCTttttatgtcg
                     tgaaaTGGGATAGAATAAAGATGATtctatgtaactaggggaatgataatggtaaaag
                     t"
                     /listShort="natR, natK"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(277882)
                     /Source="Nicolas_upshifts"
                     /id="U198"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.397602397602398"
                     /psig="0.992007992007992"
                     /xcortree=2173
                     /SigmaFactorBS="attagttggataaagttgtcgcgaagagTTCTttttatgtcg
                     tgaaaTGGGATAGAATAAAGATGATtctatgtaactaggggaatgataatggtaaaag
                     t"
                     /listShort="natR, natK"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(277911..277914)
                     /Source="Nicolas_upshift_promotors"
                     /id="U198"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.397602397602398"
                     /psig="0.992007992007992"
                     /xcortree=2173
                     /SigmaFactorBS="attagttggataaagttgtcgcgaagagTTCTttttatgtcg
                     tgaaaTGGGATAGAATAAAGATGATtctatgtaactaggggaatgataatggtaaaag
                     t"
                     /listShort="natR, natK"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-35    277932..277935
                     /Source="Nicolas_upshift_promotors"
                     /id="U199"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.356643356643357"
                     /psig="0.844155844155844"
                     /xcortree=1785
                     /SigmaFactorBS="cgacataaaaagaactcttcgcgacaactttATCCaactaat
                     ccagctttTCGTATATAGTCATTACTAGaaataaagataagggagattgtgacatgat
                     t"
                     /listShort="natA, natB, yccK"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    277951..277970
                     /Source="Nicolas_upshift_promotors"
                     /id="U199"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.356643356643357"
                     /psig="0.844155844155844"
                     /xcortree=1785
                     /SigmaFactorBS="cgacataaaaagaactcttcgcgacaactttATCCaactaat
                     ccagctttTCGTATATAGTCATTACTAGaaataaagataagggagattgtgacatgat
                     t"
                     /listShort="natA, natB, yccK"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        277961
                     /Source="Nicolas_upshifts"
                     /id="U199"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.356643356643357"
                     /psig="0.844155844155844"
                     /xcortree=1785
                     /SigmaFactorBS="cgacataaaaagaactcttcgcgacaactttATCCaactaat
                     ccagctttTCGTATATAGTCATTACTAGaaataaagataagggagattgtgacatgat
                     t"
                     /listShort="natA, natB, yccK"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             277996..278736
                     /gene="natA"
                     /locus_tag="BSU_02750"
                     /old_locus_tag="BSU02750"
                     /function="16.1: Circulate"
                     /function="16.8: Protect"
                     /experiment="publication(s) with functional evidences,
                     PMID:10356997, 17322186"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 10356997, 17322186;
                     Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="Na+ ABC efflux transporter (ATP-binding
                     protein)"
                     /protein_id="NP_388157.1"
                     /db_xref="EnsemblGenomes-Gn:BSU02750"
                     /db_xref="EnsemblGenomes-Tr:CAB12069"
                     /db_xref="GOA:P46903"
                     /db_xref="InterPro:IPR003439"
                     /db_xref="InterPro:IPR003593"
                     /db_xref="InterPro:IPR017871"
                     /db_xref="InterPro:IPR027417"
                     /db_xref="SubtiList:BG11338"
                     /db_xref="UniProtKB/Swiss-Prot:P46903"
                     /translation="MITLTDCSRRFQDKKKVVKAVRDVSLTIEKGEVVGILGENGAGK
                     TTMLRMIASLLEPSQGVITVDGFDTVKQPAEVKQRIGVLFGGETGLYDRMTAKENLQY
                     FGRLYGLNRHEIKARIEDLSKRFGMRDYMNRRVGGFSKGMRQKVAIARALIHDPDIIL
                     FDEPTTGLDITSSNIFREFIQQLKREQKTILFSSHIMEEVQALCDSVIMIHSGEVIYR
                     GALESLYESERSEDLNYIFMSKLVRGIS*"
                     /label="natA CDS"
     gene            277996..278736
                     /gene="natA"
                     /locus_tag="BSU_02750"
                     /old_locus_tag="BSU02750"
                     /label="natA gene"
     CDS             278737..279897
                     /gene="natB"
                     /locus_tag="BSU_02760"
                     /old_locus_tag="BSU02760"
                     /function="16.8: Protect"
                     /function="16.1: Circulate"
                     /experiment="publication(s) with functional evidences,
                     PMID:10356997, 15849754, 16850406, 17322186"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 10356997, 15849754,
                     16850406, 17322186; Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="Na+ ABC efflux transporter (permease)"
                     /protein_id="NP_388158.1"
                     /db_xref="EnsemblGenomes-Gn:BSU02760"
                     /db_xref="EnsemblGenomes-Tr:CAB12070"
                     /db_xref="GOA:P46904"
                     /db_xref="InterPro:IPR032688"
                     /db_xref="SubtiList:BG11339"
                     /db_xref="UniProtKB/Swiss-Prot:P46904"
                     /translation="MLSHIYKKEMIDALRDRKTILLTILVPMIMMLGLVFFYESMLSD
                     KGEQYTLAVGHSLPPALESKLNEIDEISVKTFAKPEEAVDEGKADAYLNVPKEFDSYV
                     NSMTPFKVDVYGNSIDQGSSNAMQLVQSALDQYKNEIVQQRLTNKHIDQSVIQPFTIQ
                     QKEADEEKGTSAIMLSAILPMLILTSIVSGAMPIALDIMAGEKDRKSIEALLLTPVSR
                     NKVLVGKWLAVSTFGVASGVFALVFLILSTVLFTENLKTAFQLGDHMWSVIGASALII
                     VLSALLISAMELFISIMSSSVKEAQSYMSLVVFLPVFPMFFIFSKAPNQFDLSYFLIP
                     FLNLHALFKQLLFGMVDPATILSTSGTIAVLIAIFFLLARACFLKDKWVLPK*"
                     /label="natB CDS"
     gene            278737..279897
                     /gene="natB"
                     /locus_tag="BSU_02760"
                     /old_locus_tag="BSU02760"
                     /label="natB gene"
     promotor_-35    279948..279956
                     /Source="Nicolas_upshift_promotors"
                     /id="U200"
                     /multdbtbs="-"
                     /comp="M1"
                     /sig="SigH"
                     /pcomp=1
                     /psig=1
                     /xcortree=430
                     /SigmaFactorBS="ggagaaatacactttctcctttttgtatatcctgaaaaaaGA
                     AGGAAAAtagaaaaaggaTATCTAATACAAAAAGTGAccctgcactatttttcatcaa
                     a"
                     /listShort="yccK"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    279968..279986
                     /Source="Nicolas_upshift_promotors"
                     /id="U200"
                     /multdbtbs="-"
                     /comp="M1"
                     /sig="SigH"
                     /pcomp=1
                     /psig=1
                     /xcortree=430
                     /SigmaFactorBS="ggagaaatacactttctcctttttgtatatcctgaaaaaaGA
                     AGGAAAAtagaaaaaggaTATCTAATACAAAAAGTGAccctgcactatttttcatcaa
                     a"
                     /listShort="yccK"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        279968
                     /Source="Nicolas_upshifts"
                     /id="U200"
                     /multdbtbs="-"
                     /comp="M1"
                     /sig="SigH"
                     /pcomp=1
                     /psig=1
                     /xcortree=430
                     /SigmaFactorBS="ggagaaatacactttctcctttttgtatatcctgaaaaaaGA
                     AGGAAAAtagaaaaaggaTATCTAATACAAAAAGTGAccctgcactatttttcatcaa
                     a"
                     /listShort="yccK"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             280033..280965
                     /gene="yccK"
                     /locus_tag="BSU_02770"
                     /old_locus_tag="BSU02770"
                     /EC_number="1.-.-.-"
                     /function="16.1: Circulate"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 17322186, 24330391;
                     Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative ion channel associated aldo-keto
                     reductase"
                     /protein_id="NP_388159.1"
                     /db_xref="EnsemblGenomes-Gn:BSU02770"
                     /db_xref="EnsemblGenomes-Tr:CAB12071"
                     /db_xref="GOA:P46905"
                     /db_xref="InterPro:IPR020471"
                     /db_xref="InterPro:IPR023210"
                     /db_xref="InterPro:IPR036812"
                     /db_xref="SubtiList:BG11340"
                     /db_xref="UniProtKB/Swiss-Prot:P46905"
                     /translation="MDQTRTLGKTKLKVKRIGFGANAVGGHNLFPNLNDETGKDLVRT
                     ALDGGVNFIDTAFIYGLGRSEELIGEVVQERGVRNELIIATKGAHKEVDGSIELDNSR
                     EFLRSEVEKSLKRLKTDYIDLYYVHFPDGKTPLAEVAGTLKELKDEGKIKAIGASNLD
                     YQQLQDFNADGYLEVFQAEYSLIQRDAEKELLPYCEKQGISFIPYFPLASGLLTGKFT
                     QDTVFDDFRKDKPQFQGETFIHNLKKVDKLKAVAEEKQADTAHVALAWLLTRPAIDAI
                     IPGAKRPEQLQDNLKTLNIELTEDEVNFISDIFK*"
                     /label="yccK CDS"
     gene            280033..280965
                     /gene="yccK"
                     /locus_tag="BSU_02770"
                     /old_locus_tag="BSU02770"
                     /label="yccK gene"
     CDS             complement(281005..282069)
                     /gene="ycdA"
                     /locus_tag="BSU_02780"
                     /old_locus_tag="BSU02780"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 1b: Function from experimental evidences
                     in the studied species; PubMedId: 22496484; Product type
                     lp: lipoprotein"
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein involved in swarming behaviour"
                     /protein_id="NP_388160.1"
                     /db_xref="EnsemblGenomes-Gn:BSU02780"
                     /db_xref="EnsemblGenomes-Tr:CAB12072"
                     /db_xref="GOA:O34538"
                     /db_xref="InterPro:IPR029050"
                     /db_xref="InterPro:IPR029051"
                     /db_xref="InterPro:IPR031343"
                     /db_xref="PDB:4R4G"
                     /db_xref="SubtiList:BG12757"
                     /db_xref="UniProtKB/Swiss-Prot:O34538"
                     /translation="MFQKKTYAVFLILLLMMFTAACSGSKTSAEKKESETEKSSDIAQ
                     VKIKDVSYTLPSKYDKSTSDDQLVLKVNVAVKNTGKDPLNVDSMDFTLYQGDTKMSDT
                     DPEDYSEKLQGSTINADKSVEGNLFFVVDKGKQYELNYTPESYGDKKPKSVTFKIDGK
                     DKKILATADKLQDSAKALSAYVDVLLFGKDNADFEKITGANKNEIVNDFNESAKDGYL
                     SASGLSSTYADSKALDNIVNGIKEGLSKNSSIQAKTTSISKDEAIVEATVKPVDASSL
                     SDRIEDKVKDYYSKNSSASYEEAVKYALQVYPEEFKKLGPASSEKTVEVKMKKNDIDQ
                     WQLDMDDYRAAELVEAFIKE*"
                     /label="ycdA CDS"
     gene            complement(281005..282069)
                     /gene="ycdA"
                     /locus_tag="BSU_02780"
                     /old_locus_tag="BSU02780"
                     /label="ycdA gene"
     downshifts      complement(281006)
                     /Source="Nicolas_upshifts"
                     /id="D114"
                     /incds=0
                     /nref=198
                     /ntot=222
                     /MaxReadThrough="0.57029"
                     /MaxDrop="8.85093"
                     /score="27.0612397"
                     /energy="-13.7"
                     /TU="NA"
                     /idTUdmin="U201"
                     /TUdmin=0
                     /isTUend="TRUE"
                     /label="downshifts"
     S_feature       complement(282070..282260)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_300503_300693_c"
                     /HighExp="S5, S4, MG 45, MG 15, MG-0.2, MG 25, MG-0.1, MG
                     10, S3, MG t5"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.997"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S101"
     CDS             complement(282092..282223)
                     /locus_tag="BSU_02785"
                     /old_locus_tag="BSU02785"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 5: Unknown function"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_009513941.1"
                     /translation="MTKEGGVSRKSGENREKRTDFFGYMMLIHSKRSISQRQKTPLS*
                     "
                     /label="hypothetical protein CDS"
     gene            complement(282092..282223)
                     /locus_tag="BSU_02785"
                     /old_locus_tag="BSU02785"
                     /label="gene"
     promotor_-10    complement(282245..282264)
                     /Source="Nicolas_upshift_promotors"
                     /id="U201"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.954045954045954"
                     /psig="0.997002997002997"
                     /xcortree=2915
                     /SigmaFactorBS="ttaccagaacatttttcaccaaaaataggatgatgaaccTAT
                     TCAATataaaagctaataaTCTTAAAATTAATTCCGTTGtaactttttataggtccat
                     t"
                     /listShort="S101, ycdA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(282265)
                     /Source="Nicolas_upshifts"
                     /id="U201"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.954045954045954"
                     /psig="0.997002997002997"
                     /xcortree=2915
                     /SigmaFactorBS="ttaccagaacatttttcaccaaaaataggatgatgaaccTAT
                     TCAATataaaagctaataaTCTTAAAATTAATTCCGTTGtaactttttataggtccat
                     t"
                     /listShort="S101, ycdA"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(282279..282286)
                     /Source="Nicolas_upshift_promotors"
                     /id="U201"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.954045954045954"
                     /psig="0.997002997002997"
                     /xcortree=2915
                     /SigmaFactorBS="ttaccagaacatttttcaccaaaaataggatgatgaaccTAT
                     TCAATataaaagctaataaTCTTAAAATTAATTCCGTTGtaactttttataggtccat
                     t"
                     /listShort="S101, ycdA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             282397..283815
                     /gene="ycdB"
                     /locus_tag="BSU_02790"
                     /old_locus_tag="BSU02790"
                     /function="16.11: Scavenge (Catabolism)"
                     /function="16.6: Maintain"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved protein of unknown function"
                     /protein_id="NP_388161.1"
                     /db_xref="EnsemblGenomes-Gn:BSU02790"
                     /db_xref="EnsemblGenomes-Tr:CAB12073"
                     /db_xref="InterPro:IPR032599"
                     /db_xref="SubtiList:BG12758"
                     /db_xref="UniProtKB/Swiss-Prot:O34621"
                     /translation="MKGAAFVKKEGLKQKALEIGRVPTHLKLEIEDYGGDDKRAHFCW
                     ADPQDENTGIIVELGPDGELESLSRDIEPESGERLSEEKLEDIMRQFVETHHPGALSA
                     FVREENDRAYGDKVRFSYVQMEAGLPLPMSGFMADVSLSGEIVYFRYYGEAGSIIKPK
                     RVADVEEALAFIKKDVEFDLLFEVLHRSVYKNGDDQPHLVYEPEGRAITVPADLVQEE
                     QAVDDDDDYREPESFPLPLFEGIREKADPDSMIGIENGFVKEREADLGDGRIGIVWRN
                     PDDPVYQPADKSMDSWFKGRTHQVLKTIYNKETGKLEGVMSFMEKKGPLTVTLAECEK
                     IALRFLFALFPNADQYFRIRYDEKDEEENAVAGFTFEAHCHGVPLRFGQIRICVSRQT
                     GYITVYMGPDIDPNKLATIDPVPAISVEQAKSIFWQHFKVELGWEREYGDDEEHSYRL
                     VYKPVYPHFIDAHTGEPVFSIW*"
                     /label="ycdB CDS"
     gene            282397..283815
                     /gene="ycdB"
                     /locus_tag="BSU_02790"
                     /old_locus_tag="BSU02790"
                     /label="ycdB gene"
     promotor_-10    complement(283858..283876)
                     /Source="Nicolas_upshift_promotors"
                     /id="U202"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.685314685314685"
                     /psig="0.96903096903097"
                     /xcortree=2432
                     /SigmaFactorBS="agtgaagaaaggtccttttctattattgtCATTGTTTtttga
                     gattctttCTGTTACTTTCATCACATActctcttctatatctgaggcaattgcgtgac
                     t"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(283866)
                     /Source="Nicolas_upshifts"
                     /id="U202"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.685314685314685"
                     /psig="0.96903096903097"
                     /xcortree=2432
                     /SigmaFactorBS="agtgaagaaaggtccttttctattattgtCATTGTTTtttga
                     gattctttCTGTTACTTTCATCACATActctcttctatatctgaggcaattgcgtgac
                     t"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(283890..283897)
                     /Source="Nicolas_upshift_promotors"
                     /id="U202"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.685314685314685"
                     /psig="0.96903096903097"
                     /xcortree=2432
                     /SigmaFactorBS="agtgaagaaaggtccttttctattattgtCATTGTTTtttga
                     gattctttCTGTTACTTTCATCACATActctcttctatatctgaggcaattgcgtgac
                     t"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     S_feature       283922..284001
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_302355_302434"
                     /HighExp="ferm, M40t45, M0t45, Lbstat, S0, nit, LBGtran,
                     Lbtran, G135, LBGstat"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.868"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S102"
     upshifts        283922
                     /Source="Nicolas_upshifts"
                     /id="U203"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.48051948051948"
                     /psig="0.868131868131868"
                     /xcortree=1586
                     /SigmaFactorBS="tgatgaaagtaacagaaagaatctcaaaaaacaatgacaata
                     atagaaaaggacctttcttcACTTTAAatgaagaaaggtctTTTTATATAATAAACAG
                     G"
                     /listShort="S102, ycdC, S103"
                     /listLong="rapJ"
                     /label="upshifts"
     promotor_-35    283924..283930
                     /Source="Nicolas_upshift_promotors"
                     /id="U203"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.48051948051948"
                     /psig="0.868131868131868"
                     /xcortree=1586
                     /SigmaFactorBS="tgatgaaagtaacagaaagaatctcaaaaaacaatgacaata
                     atagaaaaggacctttcttcACTTTAAatgaagaaaggtctTTTTATATAATAAACAG
                     G"
                     /listShort="S102, ycdC, S103"
                     /listLong="rapJ"
                     /label="promotor_-35"
     promotor_-10    283945..283962
                     /Source="Nicolas_upshift_promotors"
                     /id="U203"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.48051948051948"
                     /psig="0.868131868131868"
                     /xcortree=1586
                     /SigmaFactorBS="tgatgaaagtaacagaaagaatctcaaaaaacaatgacaata
                     atagaaaaggacctttcttcACTTTAAatgaagaaaggtctTTTTATATAATAAACAG
                     G"
                     /listShort="S102, ycdC, S103"
                     /listLong="rapJ"
                     /label="promotor_-10"
     CDS             284002..285363
                     /gene="ycdC"
                     /locus_tag="BSU_02800"
                     /old_locus_tag="BSU02800"
                     /function="16.11: Scavenge (Catabolism)"
                     /function="16.6: Maintain"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved protein of unknown function"
                     /protein_id="NP_388162.1"
                     /db_xref="EnsemblGenomes-Gn:BSU02800"
                     /db_xref="EnsemblGenomes-Tr:CAB12074"
                     /db_xref="InterPro:IPR032599"
                     /db_xref="SubtiList:BG12759"
                     /db_xref="UniProtKB/Swiss-Prot:O34772"
                     /translation="MVNKQLKKKAQEIGNVPTHYELEIEDYDQKQKKYGQAYFIWKDP
                     KDPEKHITVELRNDGALLTFSTTVHSETDKKLPDAELKLTALQFAAANHPGTFMNFHF
                     QGKEERGQHIRFVYTKMELGLPIPNSGFLIDMTRSGQIVHFLYYGEGHKAEVPTEFVA
                     KEKVVSHYLNTMSFELMYDVIDGEQEPRLVYEPILPGYSYPADVDEIVPDQHIADERI
                     ENTAPLPPLQNKEEVDIFALLGFTSDMQKVSERDFGEQIGSTWRRGAAPERKDLSIGS
                     YFETRNKNTIKMKTDKRTGKLKAALSFMDWRNNLQCSTEECQEIALQFLYALYPRAAE
                     FFRVNPVRIDERGRVRNHFSVWYKGVPLRFGAARIIVNPETGLIDAFMAPDIEPEQLE
                     AINHRPDVSAEEAKEAFLAAFDVKLEWQPDFTAGSDQHCKLVYKPVYPSYIDAHIRKK
                     KRL*"
                     /label="ycdC CDS"
     gene            284002..285363
                     /gene="ycdC"
                     /locus_tag="BSU_02800"
                     /old_locus_tag="BSU02800"
                     /label="ycdC gene"
     S_feature       285364..285944
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_303797_304377"
                     /HighExp="ferm, M0t45, G135, G180, H2O2, M40t45, G150,
                     Paraq, S0, nit"
                     /AntisenseName="cwlK"
                     /AntisenseCor="0.27553388443794402"
                     /AntisenseRegPval="-5.3"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.868"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S103"
     CDS             complement(285371..285874)
                     /gene="cwlK"
                     /locus_tag="BSU_02810"
                     /old_locus_tag="BSU02810"
                     /EC_number="3.4.-.-"
                     /function="16.11: Scavenge (Catabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:17588176"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 17588176; Product type e:
                     enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="murein L,D:-endopeptidase"
                     /protein_id="NP_388163.1"
                     /db_xref="EnsemblGenomes-Gn:BSU02810"
                     /db_xref="EnsemblGenomes-Tr:CAB12075"
                     /db_xref="GOA:O34360"
                     /db_xref="InterPro:IPR009045"
                     /db_xref="SubtiList:BG12760"
                     /db_xref="UniProtKB/Swiss-Prot:O34360"
                     /translation="MNLPAKTFVILCILFLLDLCFSYIRHEWHSQNALQDMPVPSDLH
                     PIVKQNADALKAAAANKGIDVVITEGFRSFKEQDELYKQGRTKKGNIVTYARGGESYH
                     NYGLAIDFALQKKDGSIIWDMEYDGNQNGKSDWLEVVEIAKTLGFEWGGDWKRFKDYP
                     HLEMIPN*"
                     /label="cwlK CDS"
     gene            complement(285371..285874)
                     /gene="cwlK"
                     /locus_tag="BSU_02810"
                     /old_locus_tag="BSU02810"
                     /label="cwlK gene"
     S_feature       complement(285875..285956)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_304308_304389_c"
                     /HighExp="Cold, T0.30H, LBGstat, C30, T-0.40H, T1.0H,
                     T1.30H, H2O2, T0.0H, T-1.10H"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.946"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S104"
     upshifts        285946
                     /Source="Nicolas_upshifts"
                     /id="U204"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.992007992007992"
                     /psig=1
                     /xcortree=2275
                     /SigmaFactorBS="tttctcaagatgtgctgaatgttaacgcttttaagtgattga
                     ctctctctaaaagcgaacagcTATGATAAAATATAACATAAatagtagcaggaggaag
                     g"
                     /listShort="rapJ"
                     /listLong="ycdF, ycdG, adcA, adcC, adcB"
                     /label="upshifts"
     promotor_-10    complement(285948..285967)
                     /Source="Nicolas_upshift_promotors"
                     /id="U205"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.576423576423576"
                     /psig="0.946053946053946"
                     /xcortree=2433
                     /SigmaFactorBS="tgatggaatctttgctctcatcggtctgcctccttccTcctg
                     ctactattTATGTTATATTTTATCATAGctgttcgcttttagagagagtcaatcactt
                     a"
                     /listShort="S104, cwlK"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     misc_feature    285949..285968
                     /Source="Nicolas_upshift_promotors"
                     /id="U204"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.992007992007992"
                     /psig=1
                     /xcortree=2275
                     /SigmaFactorBS="tttctcaagatgtgctgaatgttaacgcttttaagtgattga
                     ctctctctaaaagcgaacagcTATGATAAAATATAACATAAatagtagcaggaggaag
                     g"
                     /listShort="rapJ"
                     /listLong="ycdF, ycdG, adcA, adcC, adcB"
                     /label="promotor_single_box"
                     /note="Geneious type: promotor_single_box"
     upshifts        complement(285957)
                     /Source="Nicolas_upshifts"
                     /id="U205"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.576423576423576"
                     /psig="0.946053946053946"
                     /xcortree=2433
                     /SigmaFactorBS="tgatggaatctttgctctcatcggtctgcctccttccTcctg
                     ctactattTATGTTATATTTTATCATAGctgttcgcttttagagagagtcaatcactt
                     a"
                     /listShort="S104, cwlK"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             285997..287118
                     /gene="rapJ"
                     /locus_tag="BSU_02820"
                     /old_locus_tag="BSU02820"
                     /function="16.3: Control"
                     /experiment="publication(s) with functional evidences,
                     PMID:16816200"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 16816200; Product type e:
                     enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator aspartate phosphatase"
                     /protein_id="NP_388164.1"
                     /db_xref="EnsemblGenomes-Gn:BSU02820"
                     /db_xref="EnsemblGenomes-Tr:CAB12076"
                     /db_xref="GOA:O34327"
                     /db_xref="InterPro:IPR011990"
                     /db_xref="InterPro:IPR013026"
                     /db_xref="InterPro:IPR019734"
                     /db_xref="PDB:4GYO"
                     /db_xref="SubtiList:BG12663"
                     /db_xref="UniProtKB/Swiss-Prot:O34327"
                     /translation="MRAKIPSEEVAVKLNEWYKLIRAFEADQAEALKQEIEYDLEDME
                     ENQDLLLYFSLMEFRHRIMLDKLMPVKDSDTKPPFSDMLNEIESNQQKLTGLLEYYFY
                     YFRGMYEFKQKNFILAIDHYKHAEEKLEYVEDEIEKAEFLFKVAEVYYHIKQTYFSMN
                     YASQALDIYTKYELYGRRRVQCEFIIAGNLTDVYHHEKALTHLCSALEHARQLEEAYM
                     IAAAYYNVGHCKYSLGDYKEAEGYFKTAAAIFEEHNFQQAVQAVFSLTHIYCKEGKYD
                     KAVEAYDRGIKSAAEWEDDMYLTKFRLIHELYLGSGDLNVLTECFDLLESRQLLADAE
                     DLLHDTAERFNQLEHYESAAFFYRRLMNIKKKLAEQRFQ*"
                     /label="rapJ CDS"
     gene            285997..287118
                     /gene="rapJ"
                     /locus_tag="BSU_02820"
                     /old_locus_tag="BSU02820"
                     /label="rapJ gene"
     downshifts      287112
                     /Source="Nicolas_upshifts"
                     /id="D115"
                     /incds=0
                     /nref=88
                     /ntot=228
                     /MaxReadThrough="3.8438"
                     /MaxDrop="5.06867"
                     /score="32.2653577"
                     /energy="-13.2"
                     /TU="U204"
                     /idTUdmin="U204"
                     /TUdmin="-66"
                     /isTUend="FALSE"
                     /label="downshifts"
     promotor_-35    287159..287165
                     /Source="Nicolas_upshift_promotors"
                     /id="U206"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp=1
                     /psig=1
                     /xcortree=187
                     /SigmaFactorBS="tggcagagaactacaggttctctgctttttttgtgcTGTTTT
                     CaactcggaaaaacaGGGTATTTTCCACTGCATAgtgagaaacagaggaggatatcaa
                     g"
                     /listShort="ycdF, ycdG, adcA, adcC, adcB"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    287180..287198
                     /Source="Nicolas_upshift_promotors"
                     /id="U206"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp=1
                     /psig=1
                     /xcortree=187
                     /SigmaFactorBS="tggcagagaactacaggttctctgctttttttgtgcTGTTTT
                     CaactcggaaaaacaGGGTATTTTCCACTGCATAgtgagaaacagaggaggatatcaa
                     g"
                     /listShort="ycdF, ycdG, adcA, adcC, adcB"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        287183
                     /Source="Nicolas_upshifts"
                     /id="U206"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp=1
                     /psig=1
                     /xcortree=187
                     /SigmaFactorBS="tggcagagaactacaggttctctgctttttttgtgcTGTTTT
                     CaactcggaaaaacaGGGTATTTTCCACTGCATAgtgagaaacagaggaggatatcaa
                     g"
                     /listShort="ycdF, ycdG, adcA, adcC, adcB"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             287225..288001
                     /gene="ycdF"
                     /locus_tag="BSU_02830"
                     /old_locus_tag="BSU02830"
                     /EC_number="1.1.1.-"
                     /function="16.11: Scavenge (Catabolism)"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 10220166, 11948145,
                     15805528; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative oxidoreductase"
                     /protein_id="NP_388165.1"
                     /db_xref="EnsemblGenomes-Gn:BSU02830"
                     /db_xref="EnsemblGenomes-Tr:CAB12077"
                     /db_xref="GOA:P80869"
                     /db_xref="InterPro:IPR002347"
                     /db_xref="InterPro:IPR020904"
                     /db_xref="InterPro:IPR036291"
                     /db_xref="SubtiList:BG12761"
                     /db_xref="UniProtKB/Swiss-Prot:P80869"
                     /translation="MYKDLTGKTAIVTGSSKGIGKAIAERFGKEKMNVVVNYHSDPSG
                     ADETLEIIKQNGGKAVSVEADVSKEEGIQALLDTALEHFGTLDVMVNNSGFNGVEAMP
                     HEMSLEDWQRVIDVNVTGTFLGAKAALNHMMKNNIKGNVLNISSVHQQIPRPVNVQYS
                     TSKGGIKMMTETLALNYADKGIRVNAIAPGTIATESNVDTKKEESRQKQLKKIPMKAF
                     GKPEEVAAAAAWLVSEEASYVTGATLFVDGGMTLYPSQLE*"
                     /label="ycdF CDS"
     gene            287225..288001
                     /gene="ycdF"
                     /locus_tag="BSU_02830"
                     /old_locus_tag="BSU02830"
                     /label="ycdF gene"
     downshifts      complement(287232)
                     /Source="Nicolas_upshifts"
                     /id="D116"
                     /incds=0
                     /nref=10
                     /ntot=23
                     /MaxReadThrough="0.31912"
                     /MaxDrop="4.8095"
                     /score="0.506500496"
                     /energy="-5.8"
                     /TU="NA"
                     /idTUdmin="U205"
                     /TUdmin="-1914"
                     /isTUend="FALSE"
                     /label="downshifts"
     CDS             288026..289711
                     /gene="ycdG"
                     /locus_tag="BSU_02840"
                     /old_locus_tag="BSU02840"
                     /EC_number="3.2.1.10"
                     /function="16.11: Scavenge (Catabolism)"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 11544224; Product type
                     e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative oligo-carbohydrate hydrolase"
                     /protein_id="NP_388166.1"
                     /db_xref="EnsemblGenomes-Gn:BSU02840"
                     /db_xref="EnsemblGenomes-Tr:CAB12078"
                     /db_xref="GOA:O34364"
                     /db_xref="InterPro:IPR006047"
                     /db_xref="InterPro:IPR017853"
                     /db_xref="SubtiList:BG12762"
                     /db_xref="UniProtKB/Swiss-Prot:O34364"
                     /translation="MKTDWWKDAVVYQIYPRSFQDSNGDGIGDLRGIISRLDYIKELG
                     ADVIWICPIYPSPNVDYGYDVTNHKAIMDSYGTMDDFHELLDQVHQRGLKLVMDFVLN
                     HTSVEHPWFKEAELDKNSKYRSYYYWRPGTKNGPPTDWLSNYGCPVWQYEEHTGEYYL
                     HMNAVKQADLNWENPEVRQAVYDMMKFWLDKGVDGLRIDQLHLISKKEYLPSYEDYIN
                     QQAEPKPFQPNGERIHDYLKEITDEVFSHYDVMSVGEVGSVTPEEGLKYTGTDKHELN
                     MIFHFQHMELDQQPGKEHWDLKPLELSDLKSVLTKWQKKLEHQGWNTLFWCNHDQPRI
                     VSRFGDDGEYRKASAKMLAAVIYFMKGTPYIYQGEEIGMTNAPFTRIEDYKDIQTINM
                     YHKRVFEKGYDPNDVMRSILAKSRDHARTPMQWNSGKNAGFTDGTPWLKVNPNFTAIN
                     VEEAQGDPDSVLNYYKKLISLRKQYADLMKGSFDLLLPDDPQLFVYMRENSKQQLLSV
                     NNFSKEQAVFQWPKNCGKAQASLLLSNYNNDDLDDEMVFRPYESRVYLLDKTN*"
                     /label="ycdG CDS"
     gene            288026..289711
                     /gene="ycdG"
                     /locus_tag="BSU_02840"
                     /old_locus_tag="BSU02840"
                     /label="ycdG gene"
     promotor_no_box 288966..289066
                     /Source="Nicolas_upshift_promotors"
                     /id="U207"
                     /multdbtbs="-"
                     /comp="M13"
                     /sig="Sig-"
                     /pcomp="0.487512487512487"
                     /psig="0.044955044955045"
                     /xcortree=117
                     /SigmaFactorBS="agaagcttgaacatcaaggctggaatacattgttttggtgca
                     accacgaccagccccggattgtgtccagattcggagacgatggggaataccgcaaagc
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_no_box"
     upshifts        289026
                     /Source="Nicolas_upshifts"
                     /id="U207"
                     /multdbtbs="-"
                     /comp="M13"
                     /sig="Sig-"
                     /pcomp="0.487512487512487"
                     /psig="0.044955044955045"
                     /xcortree=117
                     /SigmaFactorBS="agaagcttgaacatcaaggctggaatacattgttttggtgca
                     accacgaccagccccggattgtgtccagattcggagacgatggggaataccgcaaagc
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     downshifts      289092
                     /Source="Nicolas_upshifts"
                     /id="D117"
                     /incds=1
                     /nref=1
                     /ntot=1
                     /MaxReadThrough="7.77365"
                     /MaxDrop="2.18547"
                     /score="23.9074448"
                     /energy="-10.2"
                     /TU="U206"
                     /idTUdmin="U204"
                     /TUdmin=1914
                     /isTUend="FALSE"
                     /label="downshifts"
     downshifts      289708
                     /Source="Nicolas_upshifts"
                     /id="D118"
                     /incds=0
                     /nref=13
                     /ntot=56
                     /MaxReadThrough="5.8252"
                     /MaxDrop="5.18702"
                     /score="23.9074448"
                     /energy="-10.2"
                     /TU="U206"
                     /idTUdmin="U204"
                     /TUdmin=2530
                     /isTUend="FALSE"
                     /label="downshifts"
     promotor_-35    289802..289809
                     /Source="Nicolas_upshift_promotors"
                     /id="U208"
                     /multdbtbs="SigA"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.401598401598402"
                     /psig="0.999000999001"
                     /xcortree=669
                     /SigmaFactorBS="ggcgggaagaataaatgaaaatgaaatttatTCTTGCAAaac
                     gtaatgacttcgGTTTATTATGATATAGGATTacaaaatcgttatcattttgatttaa
                     a"
                     /listShort="adcA, adcC, adcB"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    289825..289844
                     /Source="Nicolas_upshift_promotors"
                     /id="U208"
                     /multdbtbs="SigA"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.401598401598402"
                     /psig="0.999000999001"
                     /xcortree=669
                     /SigmaFactorBS="ggcgggaagaataaatgaaaatgaaatttatTCTTGCAAaac
                     gtaatgacttcgGTTTATTATGATATAGGATTacaaaatcgttatcattttgatttaa
                     a"
                     /listShort="adcA, adcC, adcB"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        289831
                     /Source="Nicolas_upshifts"
                     /id="U208"
                     /multdbtbs="SigA"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.401598401598402"
                     /psig="0.999000999001"
                     /xcortree=669
                     /SigmaFactorBS="ggcgggaagaataaatgaaaatgaaatttatTCTTGCAAaac
                     gtaatgacttcgGTTTATTATGATATAGGATTacaaaatcgttatcattttgatttaa
                     a"
                     /listShort="adcA, adcC, adcB"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             289899..290858
                     /gene="znuA"
                     /locus_tag="BSU_02850"
                     /old_locus_tag="BSU02850"
                     /function="16.1: Circulate"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 2a: Function from experimental evidences
                     in other organisms; PubMedId: 9379902, 12426338, 14730579,
                     21813502; Product type lp: lipoprotein"
                     /codon_start=1
                     /transl_table=11
                     /product="Zn(II)-binding lipoprotein"
                     /protein_id="NP_388167.1"
                     /db_xref="EnsemblGenomes-Gn:BSU02850"
                     /db_xref="EnsemblGenomes-Tr:CAB12079"
                     /db_xref="GOA:O34966"
                     /db_xref="InterPro:IPR006127"
                     /db_xref="InterPro:IPR006128"
                     /db_xref="InterPro:IPR006129"
                     /db_xref="PDB:2O1E"
                     /db_xref="SubtiList:BG12763"
                     /db_xref="UniProtKB/Swiss-Prot:O34966"
                     /translation="MFKKWSGLFVIAACFLLVAACGNSSTKGSADSKGDKLHVVTTFY
                     PMYEFTKQIVKDKGDVDLLIPSSVEPHDWEPTPKDIANIQDADLFVYNSEYMETWVPS
                     AEKSMGQGHAVFVNASKGIDLMEGSEEEHEEHDHGEHEHSHAMDPHVWLSPVLAQKEV
                     KNITAQIVKQDPDNKEYYEKNSKEYIAKLQDLDKLYRTTAKKAEKKEFITQHTAFGYL
                     AKEYGLKQVPIAGLSPDQEPSAASLAKLKTYAKEHNVKVIYFEEIASSKVADTLASEI
                     GAKTEVLNTLEGLSKEEQDKGLGYIDIMKQNLDALKDSLLVKS*"
                     /label="znuA CDS"
     gene            289899..290858
                     /gene="znuA"
                     /locus_tag="BSU_02850"
                     /old_locus_tag="BSU02850"
                     /label="znuA gene"
     promotor_-35    290454..290460
                     /Source="Nicolas_upshift_promotors"
                     /id="U209"
                     /multdbtbs="-"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp="0.461538461538462"
                     /psig="0.998001998001998"
                     /xcortree=670
                     /SigmaFactorBS="aacaaagaatactatgagaaaaatagtaaagaatatATTGCA
                     AaactgcaggatctTGATAAACTATATCGTACAAccgcaaaaaaagcggagaaaaaag
                     a"
                     /listShort="adcC, adcB"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    290474..290493
                     /Source="Nicolas_upshift_promotors"
                     /id="U209"
                     /multdbtbs="-"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp="0.461538461538462"
                     /psig="0.998001998001998"
                     /xcortree=670
                     /SigmaFactorBS="aacaaagaatactatgagaaaaatagtaaagaatatATTGCA
                     AaactgcaggatctTGATAAACTATATCGTACAAccgcaaaaaaagcggagaaaaaag
                     a"
                     /listShort="adcC, adcB"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        290478
                     /Source="Nicolas_upshifts"
                     /id="U209"
                     /multdbtbs="-"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp="0.461538461538462"
                     /psig="0.998001998001998"
                     /xcortree=670
                     /SigmaFactorBS="aacaaagaatactatgagaaaaatagtaaagaatatATTGCA
                     AaactgcaggatctTGATAAACTATATCGTACAAccgcaaaaaaagcggagaaaaaag
                     a"
                     /listShort="adcC, adcB"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     downshifts      290830
                     /Source="Nicolas_upshifts"
                     /id="D119"
                     /incds=0
                     /nref=140
                     /ntot=250
                     /MaxReadThrough="6.07181"
                     /MaxDrop="5.15011"
                     /score="8.99106569"
                     /energy="-15.9"
                     /TU="U206,U208,U209"
                     /idTUdmin="U206"
                     /TUdmin="-1562"
                     /isTUend="FALSE"
                     /label="downshifts"
     CDS             290914..291609
                     /gene="znuC"
                     /locus_tag="BSU_02860"
                     /old_locus_tag="BSU02860"
                     /function="16.1: Circulate"
                     /experiment="publication(s) with functional evidences,
                     PMID:9379902, 9811636, 21813502"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 9379902, 9811636,
                     21813502; Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="Zn(II) transporter (ATP-binding protein)"
                     /protein_id="NP_388168.1"
                     /db_xref="EnsemblGenomes-Gn:BSU02860"
                     /db_xref="EnsemblGenomes-Tr:CAB12080"
                     /db_xref="GOA:O34946"
                     /db_xref="InterPro:IPR003439"
                     /db_xref="InterPro:IPR003593"
                     /db_xref="InterPro:IPR017871"
                     /db_xref="InterPro:IPR027417"
                     /db_xref="SubtiList:BG12764"
                     /db_xref="UniProtKB/Swiss-Prot:O34946"
                     /translation="MNLVSLKDIVFGYSHTPVLDKVSLDIESGEFVGITGPNGASKST
                     LIKVMLGMLKPWEGTVTISKRNTEGKRLTIGYVPQQISSFNAGFPSTVLELVQSGRYT
                     KGKWFKRLNEEDHLEVEKALKMVEMWDLRHRKIGDLSGGQKQKICIARMLASNPDLLM
                     LDEPTTAVDYDSRKGFYEFMHHLVKNHNRTVVMVTHEQNEVQQFLDKVIRLERGEKGG
                     WKCLTWNSCDELF*"
                     /label="znuC CDS"
     gene            290914..291609
                     /gene="znuC"
                     /locus_tag="BSU_02860"
                     /old_locus_tag="BSU02860"
                     /label="znuC gene"
     CDS             291567..292409
                     /gene="znuB"
                     /locus_tag="BSU_02870"
                     /old_locus_tag="BSU02870"
                     /function="16.1: Circulate"
                     /experiment="publication(s) with functional evidences,
                     PMID:15849754, 16850406, 9379902, 9811636, 21813502"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 15849754, 16850406,
                     9379902, 9811636, 21813502; Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="high affinity Zn(II) ABC transporter (permease)"
                     /protein_id="NP_388169.1"
                     /db_xref="EnsemblGenomes-Gn:BSU02870"
                     /db_xref="EnsemblGenomes-Tr:CAB12081"
                     /db_xref="GOA:O34610"
                     /db_xref="InterPro:IPR001626"
                     /db_xref="InterPro:IPR035568"
                     /db_xref="SubtiList:BG12765"
                     /db_xref="UniProtKB/Swiss-Prot:O34610"
                     /translation="MEMFDLEFMRRAFLAGGMIAVMAPILGVYLVLRRQALMADTLSH
                     ISLSGVAIGFFLSTNITAASIVVVTIGAIGIEYMRRAYRTYSEVSIAILMAAGLSFAM
                     FLISLSKGTANMSIDQYLFGSLVTVNQQQVYIISIITLLILLYFIVLRRPLYLLTFDE
                     ATAKTSGINTNVLSLSFSIVTGLAISVIIPIIGVLLVSALLVLPAAFAIRIAKGFNMV
                     FITAILISLFSVFTGLTSSYQLGTPPGPSITLLLIVLLLIGFAVQGVWTFIKKEAQRK
                     KRSR*"
                     /label="znuB CDS"
     gene            291567..292409
                     /gene="znuB"
                     /locus_tag="BSU_02870"
                     /old_locus_tag="BSU02870"
                     /label="znuB gene"
     downshifts      292396
                     /Source="Nicolas_upshifts"
                     /id="D120"
                     /incds=0
                     /nref=168
                     /ntot=266
                     /MaxReadThrough="2.4865"
                     /MaxDrop="6.44929"
                     /score="27.8218406"
                     /energy="-13.6"
                     /TU="NA"
                     /idTUdmin="U206"
                     /TUdmin=4
                     /isTUend="TRUE"
                     /label="downshifts"
     CDS             complement(292447..293442)
                     /gene="yceB"
                     /locus_tag="BSU_02880"
                     /old_locus_tag="BSU02880"
                     /function="16.11: Scavenge (Catabolism)"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 16428414; Product type
                     e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative luciferase-like monooxygenase"
                     /protein_id="NP_388170.2"
                     /db_xref="EnsemblGenomes-Gn:BSU02880"
                     /db_xref="EnsemblGenomes-Tr:CAB12082"
                     /db_xref="GOA:O34504"
                     /db_xref="InterPro:IPR011251"
                     /db_xref="InterPro:IPR019949"
                     /db_xref="InterPro:IPR036661"
                     /db_xref="SubtiList:BG12766"
                     /db_xref="UniProtKB/Swiss-Prot:O34504"
                     /translation="MIHLSILDQAPVSKGESPVTTLQHSVELAQLSEQWGYKRYWFAE
                     HHSTKGLASTAPEIMIARIAAQTNTIRVGSGGVLLPQYSPFKVAETFRQLEALYPNRI
                     DLGVGRSPGGTTKTRLALTDGVKKSLTEFNRQLQDVSYFLTDSLPPDHPYAGIKAAPL
                     IGTAPELWVLGLGENSARRAAHQGIGYVFGHFINPERGENAFRIYRESFRPSAHFSNP
                     SALFTIFVICAKTDEEAEELALSQDLWLLRVGKGLDSRVPSIEEAKAHPYTASDKKLI
                     EENRKRMVIGSPTTVKQQLLDLTGCYETNEIMVLCNVFDFEAKKESYERLAELFL*"
                     /label="yceB CDS"
     gene            complement(292447..293442)
                     /gene="yceB"
                     /locus_tag="BSU_02880"
                     /old_locus_tag="BSU02880"
                     /label="yceB gene"
     promotor_-35    293398..293405
                     /Source="Nicolas_upshift_promotors"
                     /id="U210"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.661338661338661"
                     /psig="0.997002997002997"
                     /xcortree=1949
                     /SigmaFactorBS="accgaatgctggagagttgtcacagggctttcTCCTTTAGaa
                     acaggtgcctgaTCAAGTATGCTTAAATGAATcaaaaggccgcttcctttctgtctgt
                     t"
                     /listShort="S105"
                     /listLong="S106, yceC, yceD, yceE, yceF, yceG, yceH"
                     /label="promotor_-35"
     promotor_-10    293420..293439
                     /Source="Nicolas_upshift_promotors"
                     /id="U210"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.661338661338661"
                     /psig="0.997002997002997"
                     /xcortree=1949
                     /SigmaFactorBS="accgaatgctggagagttgtcacagggctttcTCCTTTAGaa
                     acaggtgcctgaTCAAGTATGCTTAAATGAATcaaaaggccgcttcctttctgtctgt
                     t"
                     /listShort="S105"
                     /listLong="S106, yceC, yceD, yceE, yceF, yceG, yceH"
                     /label="promotor_-10"
     S_feature       293426..293628
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_311859_312061"
                     /HighExp="Diami, Etha, dia5, Salt, H2O2, dia15, Paraq,
                     T-0.40H, T0.30H, G135"
                     /AntisenseName="yceB"
                     /AntisenseCor="0.84300534435872998"
                     /AntisenseRegPval="-73.099999999999994"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.997"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S105"
     upshifts        293426
                     /Source="Nicolas_upshifts"
                     /id="U210"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.661338661338661"
                     /psig="0.997002997002997"
                     /xcortree=1949
                     /SigmaFactorBS="accgaatgctggagagttgtcacagggctttcTCCTTTAGaa
                     acaggtgcctgaTCAAGTATGCTTAAATGAATcaaaaggccgcttcctttctgtctgt
                     t"
                     /listShort="S105"
                     /listLong="S106, yceC, yceD, yceE, yceF, yceG, yceH"
                     /label="upshifts"
     promotor_-10    complement(293474..293493)
                     /Source="Nicolas_upshift_promotors"
                     /id="U211"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.98901098901099"
                     /psig="0.992007992007992"
                     /xcortree=1952
                     /SigmaFactorBS="gctataaagtgcgcttcttaaacaaacCATTTGACgcgggca
                     agtcattTTGCCTATTCTGGTGTCACCatctaaaaacagacagaaaggaagcggcctt
                     t"
                     /listShort="yceB"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(293482)
                     /Source="Nicolas_upshifts"
                     /id="U211"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.98901098901099"
                     /psig="0.992007992007992"
                     /xcortree=1952
                     /SigmaFactorBS="gctataaagtgcgcttcttaaacaaacCATTTGACgcgggca
                     agtcattTTGCCTATTCTGGTGTCACCatctaaaaacagacagaaaggaagcggcctt
                     t"
                     /listShort="yceB"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(293508..293515)
                     /Source="Nicolas_upshift_promotors"
                     /id="U211"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.98901098901099"
                     /psig="0.992007992007992"
                     /xcortree=1952
                     /SigmaFactorBS="gctataaagtgcgcttcttaaacaaacCATTTGACgcgggca
                     agtcattTTGCCTATTCTGGTGTCACCatctaaaaacagacagaaaggaagcggcctt
                     t"
                     /listShort="yceB"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-35    293612..293621
                     /Source="Nicolas_upshift_promotors"
                     /id="U212"
                     /multdbtbs="SigA,SigW"
                     /comp="M9"
                     /sig="SigWXY"
                     /pcomp="0.999000999001"
                     /psig="0.999000999001"
                     /xcortree=1676
                     /SigmaFactorBS="agttttttttcgaggtttttcgtcaattattcttaactttta
                     CGAAACTTTGatataataacaaACGTATATATTAGTAAtttacggcttattttccttg
                     t"
                     /listShort="S106, yceC, yceD, yceE, yceF, yceG, yceH,
                     yceI"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     S_feature       293630..293725
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_312063_312158"
                     /HighExp="T0.0H, T-0.40H, T-1.10H, T0.30H, Salt, T1.0H,
                     Etha, T-1.40H, T1.30H, T2.0H"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigWXY"
                     /TUshortPSig="0.999"
                     /TUlongSig="SigA"
                     /TUlongPSig="0.997"
                     /label="S106"
     upshifts        293630
                     /Source="Nicolas_upshifts"
                     /id="U212"
                     /multdbtbs="SigA,SigW"
                     /comp="M9"
                     /sig="SigWXY"
                     /pcomp="0.999000999001"
                     /psig="0.999000999001"
                     /xcortree=1676
                     /SigmaFactorBS="agttttttttcgaggtttttcgtcaattattcttaactttta
                     CGAAACTTTGatataataacaaACGTATATATTAGTAAtttacggcttattttccttg
                     t"
                     /listShort="S106, yceC, yceD, yceE, yceF, yceG, yceH,
                     yceI"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-10    293634..293649
                     /Source="Nicolas_upshift_promotors"
                     /id="U212"
                     /multdbtbs="SigA,SigW"
                     /comp="M9"
                     /sig="SigWXY"
                     /pcomp="0.999000999001"
                     /psig="0.999000999001"
                     /xcortree=1676
                     /SigmaFactorBS="agttttttttcgaggtttttcgtcaattattcttaactttta
                     CGAAACTTTGatataataacaaACGTATATATTAGTAAtttacggcttattttccttg
                     t"
                     /listShort="S106, yceC, yceD, yceE, yceF, yceG, yceH,
                     yceI"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     CDS             293726..294325
                     /gene="yceC"
                     /locus_tag="BSU_02890"
                     /old_locus_tag="BSU02890"
                     /function="16.8: Protect"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 24366250; Product type
                     f: factor"
                     /codon_start=1
                     /transl_table=11
                     /product="putative stress adaptation protein (tellurite
                     resistance)"
                     /protein_id="NP_388171.1"
                     /db_xref="EnsemblGenomes-Gn:BSU02890"
                     /db_xref="EnsemblGenomes-Tr:CAB12083"
                     /db_xref="GOA:P81100"
                     /db_xref="InterPro:IPR003325"
                     /db_xref="SubtiList:BG12767"
                     /db_xref="UniProtKB/Swiss-Prot:P81100"
                     /translation="MAISLEKGQRIDLTKGKAGLSKLMVGLGWDPVSSGGGFFSKLLG
                     GGGPNIDCDASVLMLENGKFTDKKNLIYFGNLKSRCGGVQHTGDNLTGDGAGDDEQIM
                     IDLDKVPGNIDKLVFVVNIYDCVRRKQDFGMIQNAFIRVVDQSNHEEMLKYNLRDNYA
                     GRTSLITAEIYRSGSEWKFAAVGEGTNDTRLEDIISRYV*"
                     /label="yceC CDS"
     gene            293726..294325
                     /gene="yceC"
                     /locus_tag="BSU_02890"
                     /old_locus_tag="BSU02890"
                     /label="yceC gene"
     CDS             294347..294928
                     /gene="yceD"
                     /locus_tag="BSU_02900"
                     /old_locus_tag="BSU02900"
                     /function="16.8: Protect"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 22720735, 24366250;
                     Product type f: factor"
                     /codon_start=1
                     /transl_table=11
                     /product="putative stress adaptation protein (tellurite
                     resistance)"
                     /protein_id="NP_388172.1"
                     /db_xref="EnsemblGenomes-Gn:BSU02900"
                     /db_xref="EnsemblGenomes-Tr:CAB12084"
                     /db_xref="GOA:P80875"
                     /db_xref="InterPro:IPR003325"
                     /db_xref="SubtiList:BG12768"
                     /db_xref="UniProtKB/Swiss-Prot:P80875"
                     /translation="MTISLAKGQKVDLTKTNPGLSKVVVGLGWDTNKYDGGHDFDLDS
                     SVFLLDAAGKCASPNDFIFYNQLEGGNGSVVHSGDNLTGAGEGDDENVKVNLSAVPAN
                     IDKISFVITIHDAEARSQNFGQVSNAFVRIVNEETNEELIRYDLAEDFSIETAIIAGE
                     LYRHNGEWKFSAIGSGYQGGLARIATDYGLQVG*"
                     /label="yceD CDS"
     gene            294347..294928
                     /gene="yceD"
                     /locus_tag="BSU_02900"
                     /old_locus_tag="BSU02900"
                     /label="yceD gene"
     CDS             294963..295541
                     /gene="yceE"
                     /locus_tag="BSU_02910"
                     /old_locus_tag="BSU02910"
                     /function="16.8: Protect"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 22720735, 24366250,
                     25355936; Product type f: factor"
                     /codon_start=1
                     /transl_table=11
                     /product="putative stress adaptation protein (tellurite
                     resistance)"
                     /protein_id="NP_388173.1"
                     /db_xref="EnsemblGenomes-Gn:BSU02910"
                     /db_xref="EnsemblGenomes-Tr:CAB12085"
                     /db_xref="GOA:O34384"
                     /db_xref="InterPro:IPR003325"
                     /db_xref="SubtiList:BG12769"
                     /db_xref="UniProtKB/Swiss-Prot:O34384"
                     /translation="MAIQLSKGQRIDLTKTNPGLTKAVIGLGWDTNKYSGGHDFDLDA
                     SAFLVDAHDNCVNDLDFVFYNNLEHPSGGVIHTGDNRTGEGDGDDEQIIVDFSKIPAH
                     IEKIGITVTIHDAEARSQNFGQVSNAFVRVVDEETQNELLRFDLGEDFSIETAVVVCE
                     LYRHGGEWKFNAIGSGFSGGLAALCRNYGLQV*"
                     /label="yceE CDS"
     gene            294963..295541
                     /gene="yceE"
                     /locus_tag="BSU_02910"
                     /old_locus_tag="BSU02910"
                     /label="yceE gene"
     CDS             295592..296365
                     /gene="yceF"
                     /locus_tag="BSU_02920"
                     /old_locus_tag="BSU02920"
                     /function="16.8: Protect"
                     /function="16.1: Circulate"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 15849754, 16850406,
                     22720735, 24366250; Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="putative stress adaptation transporter
                     (tellurite resistance)"
                     /protein_id="NP_388174.1"
                     /db_xref="EnsemblGenomes-Gn:BSU02920"
                     /db_xref="EnsemblGenomes-Tr:CAB12086"
                     /db_xref="GOA:O34447"
                     /db_xref="InterPro:IPR005496"
                     /db_xref="InterPro:IPR022493"
                     /db_xref="SubtiList:BG12770"
                     /db_xref="UniProtKB/Swiss-Prot:O34447"
                     /translation="MDFLHHILSTYASFFDWKMWGEVLTDPVSWGLIGSLVVLEGLLS
                     ADNALVLAVMVKHLPEKQRKKALTYGLFGAYIFRFIFIGLGMLLIKFWWIKVLGALYL
                     AWLVIKHFWIGEKEEEADGMKKNSWMVRTFGIFWATVISVELMDLAFSVDSILAAFAV
                     SEKVWVLLIGGMLGILMMRTVAKVFLVLIDKIPELENTAFVLIGIIALKMAGSAFHYE
                     MPHSVFFIIIIAAFAVTLIIHYINKQKQVREQTAASKEE*"
                     /label="yceF CDS"
     gene            295592..296365
                     /gene="yceF"
                     /locus_tag="BSU_02920"
                     /old_locus_tag="BSU02920"
                     /label="yceF gene"
     downshifts      296352
                     /Source="Nicolas_upshifts"
                     /id="D121"
                     /incds=0
                     /nref=46
                     /ntot=239
                     /MaxReadThrough="6.82513"
                     /MaxDrop="4.0674"
                     /score="4.0495978"
                     /energy="-8.2"
                     /TU="U212"
                     /idTUdmin="U210"
                     /TUdmin=2728
                     /isTUend="FALSE"
                     /label="downshifts"
     CDS             296450..298063
                     /gene="yceG"
                     /locus_tag="BSU_02930"
                     /old_locus_tag="BSU02930"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 24366250; Product type
                     f: factor"
                     /codon_start=1
                     /transl_table=11
                     /product="putative toxic compound adaptation protein
                     (tellurite resistance)"
                     /protein_id="NP_388175.1"
                     /db_xref="EnsemblGenomes-Gn:BSU02930"
                     /db_xref="EnsemblGenomes-Tr:CAB12087"
                     /db_xref="InterPro:IPR025647"
                     /db_xref="SubtiList:BG12771"
                     /db_xref="UniProtKB/Swiss-Prot:O34809"
                     /translation="MRQEELTIHKALPADGDWKSLLFQPLPERDHYETAQGLSFSRLA
                     GQILGTPIDETDYYNELYELSVNDRITILSETLDKTIEPETFQKLQHIHSINQKEKGL
                     SVSRFVAFLDGEKLIAKHSNPLMHRHLRKALMTLLHTFADSHEKGLNHPDFRRVLLDV
                     SKFSLNHLNPWLEKTDIEREMPKVVWYGDATKSQLYFLYYLMLVGCDVLLFHPAGTDQ
                     LALVDPKQELGFTEKLPDVSELQPFPKEKPDRKSTVAYRSTKEIEHVLNHEESMLYKP
                     WQFRDHTPVSVTLKTTYDELFLITKERAFIRPNFKADKHSIEIPNVFAKIMGVSKDNK
                     EYWNRLHTLADYQETEMVRSFPFTEEIKSNYQFHYSHALDQEGNIDPDKLMASNVWQY
                     KQLPAGVQTAIAKTISRMCRYPRLKALHQEQVKDVQIYLFKQTTNLPANLLKLIQMFD
                     YAQTVPKLVLYHTEMSGGLTRSDAAALLFLNEIGIDIIIYNPPGHQDIEQFIEEDQYD
                     IHWLDDMVFQQDYKEPSLVKRLFRTITQK*"
                     /label="yceG CDS"
     gene            296450..298063
                     /gene="yceG"
                     /locus_tag="BSU_02930"
                     /old_locus_tag="BSU02930"
                     /label="yceG gene"
     CDS             298079..299170
                     /gene="yceH"
                     /locus_tag="BSU_02940"
                     /old_locus_tag="BSU02940"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 22720735, 24366250;
                     Product type f: factor"
                     /codon_start=1
                     /transl_table=11
                     /product="putative reactive oxygen species resistance
                     protein"
                     /protein_id="NP_388176.1"
                     /db_xref="EnsemblGenomes-Gn:BSU02940"
                     /db_xref="EnsemblGenomes-Tr:CAB12088"
                     /db_xref="InterPro:IPR008863"
                     /db_xref="SubtiList:BG12772"
                     /db_xref="UniProtKB/Swiss-Prot:O34833"
                     /translation="MTTENQNPLVLDKNEEISQQKADDIRLQLRQEPEVKRLAQQIDV
                     KNQMELLEYGKEPAVEISKFSDRILGMMKTTSVTDSGTMLTQLGKIMDRFDKNDFDEP
                     KGLMAKIFKRGGSMIEKIFKKYQTLGGEIEKIHVEISKYKDEMTKTNYTLDEMYENNI
                     KYYMELEKYVVAGQMKLEEMQSILPSYEEKAASGNQLAQMQLDTLRNGIQALEERVYD
                     LDMARMVALQTAPQIRLLQRGNAKLIGKINSAFIITIPIFKNGIIQAVTVKRQKLVAD
                     SMSELDRRTNEMLKRNAENISSQSVEIARMAGRPSIDIETIESSWNTIVSGMQETKQI
                     EEENKRLREDGARRIAQLQDNIKKAALQQ*"
                     /label="yceH CDS"
     gene            298079..299170
                     /gene="yceH"
                     /locus_tag="BSU_02940"
                     /old_locus_tag="BSU02940"
                     /label="yceH gene"
     downshifts      299144
                     /Source="Nicolas_upshifts"
                     /id="D122"
                     /incds=0
                     /nref=85
                     /ntot=228
                     /MaxReadThrough="4.46836"
                     /MaxDrop="4.05585"
                     /score="-6.59172775"
                     /energy="-17.5"
                     /TU="U212"
                     /idTUdmin="U212"
                     /TUdmin="-1322"
                     /isTUend="FALSE"
                     /label="downshifts"
     promotor_-35    299224..299231
                     /Source="Nicolas_upshift_promotors"
                     /id="U213"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.977022977022977"
                     /psig="0.998001998001998"
                     /xcortree=2427
                     /SigmaFactorBS="aagcggggtatttcaattacatcatttagtTAATGACAatgt
                     gtaaagacagGTGTAAACTTAAACGGTAATcattttgcatatcagaggtgttggcaat
                     g"
                     /listShort="yceI"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    299246..299265
                     /Source="Nicolas_upshift_promotors"
                     /id="U213"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.977022977022977"
                     /psig="0.998001998001998"
                     /xcortree=2427
                     /SigmaFactorBS="aagcggggtatttcaattacatcatttagtTAATGACAatgt
                     gtaaagacagGTGTAAACTTAAACGGTAATcattttgcatatcagaggtgttggcaat
                     g"
                     /listShort="yceI"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        299254
                     /Source="Nicolas_upshifts"
                     /id="U213"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.977022977022977"
                     /psig="0.998001998001998"
                     /xcortree=2427
                     /SigmaFactorBS="aagcggggtatttcaattacatcatttagtTAATGACAatgt
                     gtaaagacagGTGTAAACTTAAACGGTAATcattttgcatatcagaggtgttggcaat
                     g"
                     /listShort="yceI"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             299292..300494
                     /gene="niaP"
                     /locus_tag="BSU_02950"
                     /old_locus_tag="BSU02950"
                     /function="16.1: Circulate"
                     /experiment="publication(s) with functional evidences,
                     PMID:15849754, 16850406, 18276644, 21953179"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 15849754, 16850406,
                     18276644, 21953179; Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="niacin permease"
                     /protein_id="NP_388177.1"
                     /db_xref="EnsemblGenomes-Gn:BSU02950"
                     /db_xref="EnsemblGenomes-Tr:CAB12089"
                     /db_xref="GOA:O34691"
                     /db_xref="InterPro:IPR005829"
                     /db_xref="InterPro:IPR011701"
                     /db_xref="InterPro:IPR020846"
                     /db_xref="InterPro:IPR036259"
                     /db_xref="SubtiList:BG12773"
                     /db_xref="UniProtKB/Swiss-Prot:O34691"
                     /translation="MGKQQPISQRKLLGVAGLGWLFDAMDVGILSFIIAALHVEWNLS
                     PEEMKWIGSVNSIGMAAGAFLFGLLADRIGRKKVFIITLLCFSIGSGISAFVTSLSAF
                     LILRFVIGMGLGGELPVASTLVSEAVVPEKRGRVIVLLESFWAVGWLAAALISYFVIP
                     SFGWQAALLLTALTAFYALYLRTSLPDSPKYESLSAKKRSMWENVKSVWARQYIRPTV
                     MLSIVWFCVVFSYYGMFLWLPSVMLLKGFSMIQSFEYVLLMTLAQLPGYFSAAWLIEK
                     AGRKWILVVYLIGTAGSAYFFGTADSLSLLLTAGVLLSFFNLGAWGVLYAYTPEQYPT
                     AIRATGSGTTAAFGRIGGIFGPLLVGTLAARHISFSVIFSIFCIAILLAVACILIMGK
                     ETKQTELE*"
                     /label="niaP CDS"
     gene            299292..300494
                     /gene="niaP"
                     /locus_tag="BSU_02950"
                     /old_locus_tag="BSU02950"
                     /label="niaP gene"
     downshifts      300474
                     /Source="Nicolas_upshifts"
                     /id="D123"
                     /incds=0
                     /nref=8
                     /ntot=184
                     /MaxReadThrough="4.1968"
                     /MaxDrop="3.48367"
                     /score="13.0427769"
                     /energy="-10.6"
                     /TU="U213"
                     /idTUdmin="U212"
                     /TUdmin=8
                     /isTUend="TRUE"
                     /label="downshifts"
     CDS             complement(300747..301919)
                     /gene="yceJ"
                     /locus_tag="BSU_02960"
                     /old_locus_tag="BSU02960"
                     /function="16.8: Protect"
                     /function="16.1: Circulate"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 15849754, 16850406;
                     Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="putative carbohydrate transporter (possibly
                     exporter)"
                     /protein_id="NP_388178.1"
                     /db_xref="EnsemblGenomes-Gn:BSU02960"
                     /db_xref="EnsemblGenomes-Tr:CAB12090"
                     /db_xref="GOA:O34724"
                     /db_xref="InterPro:IPR001958"
                     /db_xref="InterPro:IPR011701"
                     /db_xref="InterPro:IPR020846"
                     /db_xref="InterPro:IPR036259"
                     /db_xref="SubtiList:BG12774"
                     /db_xref="UniProtKB/Swiss-Prot:O34724"
                     /translation="MNRIWLFFSVMFVIGTDTFLLSPLLPLLQDQFHVSTDLSGWMVS
                     AYALGYALFAFIAGPISDRLNRKTVMLWGLAGFIVSTFLCGIAPSFAAMCLFRFAAGV
                     SAAFVTPQIWASIPVIVQPSQIIKGMGIATAGLAASQMLGLPIGGFLASFTWHTPFFV
                     LSACSLILLLILAAVMPGIRPSEPLARPSIVNPYRELFSLPKTSVILLAYFLFQTGNF
                     ASFSFLGTWLSADYHLTVSQIGAAMLVLGLGNMLGSLIGSRVSEKLGMFKTLISGMLL
                     MGALYFALPFFPNLFLVEAGFFLTFFTAGIIFPLMMGVFQSIAPNARGTIASLSNAAM
                     YAGTTVGTSIAGFLYQSTQHFGAVTGFTAILFILSMTLYQTISKTGKRQSTARAQL*"
                     /label="yceJ CDS"
     gene            complement(300747..301919)
                     /gene="yceJ"
                     /locus_tag="BSU_02960"
                     /old_locus_tag="BSU02960"
                     /label="yceJ gene"
     downshifts      complement(300762)
                     /Source="Nicolas_upshifts"
                     /id="D124"
                     /incds=0
                     /nref=1
                     /ntot=7
                     /MaxReadThrough="2.6211"
                     /MaxDrop="2.7452"
                     /score="9.21991741"
                     /energy="-12.6"
                     /TU="NA"
                     /idTUdmin="U214"
                     /TUdmin=0
                     /isTUend="TRUE"
                     /label="downshifts"
     CDS             complement(301988..302290)
                     /gene="yceK"
                     /locus_tag="BSU_02970"
                     /old_locus_tag="BSU02970"
                     /function="16.3: Control"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; Product type r: regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="putative transcriptional regulator (ArsR
                     family)"
                     /protein_id="NP_388179.1"
                     /db_xref="EnsemblGenomes-Gn:BSU02970"
                     /db_xref="EnsemblGenomes-Tr:CAB12091"
                     /db_xref="GOA:O34464"
                     /db_xref="InterPro:IPR001845"
                     /db_xref="InterPro:IPR011991"
                     /db_xref="InterPro:IPR036388"
                     /db_xref="InterPro:IPR036390"
                     /db_xref="SubtiList:BG12775"
                     /db_xref="UniProtKB/Swiss-Prot:O34464"
                     /translation="MYYSFMTMKQSDDQIRAQIFKALSDESRLAIIRTLYVSGKELSC
                     GEVGEKCNIVKTTASYHFKTLREAGLTATRKDSRTKYVSLREDTFQTYLPGFLETL*"
                     /label="yceK CDS"
     gene            complement(301988..302290)
                     /gene="yceK"
                     /locus_tag="BSU_02970"
                     /old_locus_tag="BSU02970"
                     /label="yceK gene"
     downshifts      complement(302016)
                     /Source="Nicolas_upshifts"
                     /id="D125"
                     /incds=0
                     /nref=221
                     /ntot=261
                     /MaxReadThrough="5.67096"
                     /MaxDrop="6.89889"
                     /score="2.01231069"
                     /energy="-4.8"
                     /TU="U214"
                     /idTUdmin="U214"
                     /TUdmin="-1254"
                     /isTUend="FALSE"
                     /label="downshifts"
     promotor_-10    complement(302273..302292)
                     /Source="Nicolas_upshift_promotors"
                     /id="U214"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.455544455544456"
                     /psig="0.999000999001"
                     /xcortree=635
                     /SigmaFactorBS="ccttcctcttatgacttcctgctcctttactggaaaaataAG
                     TTGCTttttcaacacccaTTATGTATTATAGTTTCATGactatgaaacaatcagatga
                     t"
                     /listShort="yceK, yceJ"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(302292)
                     /Source="Nicolas_upshifts"
                     /id="U214"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.455544455544456"
                     /psig="0.999000999001"
                     /xcortree=635
                     /SigmaFactorBS="ccttcctcttatgacttcctgctcctttactggaaaaataAG
                     TTGCTttttcaacacccaTTATGTATTATAGTTTCATGactatgaaacaatcagatga
                     t"
                     /listShort="yceK, yceJ"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(302306..302312)
                     /Source="Nicolas_upshift_promotors"
                     /id="U214"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.455544455544456"
                     /psig="0.999000999001"
                     /xcortree=635
                     /SigmaFactorBS="ccttcctcttatgacttcctgctcctttactggaaaaataAG
                     TTGCTttttcaacacccaTTATGTATTATAGTTTCATGactatgaaacaatcagatga
                     t"
                     /listShort="yceK, yceJ"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     misc_feature    302539..302558
                     /Source="Nicolas_upshift_promotors"
                     /id="U215"
                     /multdbtbs="SigA"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.555444555444555"
                     /psig="0.99100899100899"
                     /xcortree=2422
                     /SigmaFactorBS="gtttataaagaaatggtacagaataaaagagaatatgctgtt
                     tgtgtgggaagttacataAATGTTACGGTAATAAAGATtgcttaatatggagggaaaa
                     t"
                     /listShort="opuAA, opuAB, opuAC"
                     /GFF_Attribute="listLong"
                     /label="promotor_single_box"
                     /note="Geneious type: promotor_single_box"
     upshifts        302539
                     /Source="Nicolas_upshifts"
                     /id="U215"
                     /multdbtbs="SigA"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.555444555444555"
                     /psig="0.99100899100899"
                     /xcortree=2422
                     /SigmaFactorBS="gtttataaagaaatggtacagaataaaagagaatatgctgtt
                     tgtgtgggaagttacataAATGTTACGGTAATAAAGATtgcttaatatggagggaaaa
                     t"
                     /listShort="opuAA, opuAB, opuAC"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             302580..303836
                     /gene="opuAA"
                     /locus_tag="BSU_02980"
                     /old_locus_tag="BSU02980"
                     /function="16.1: Circulate"
                     /function="16.8: Protect"
                     /experiment="publication(s) with functional evidences,
                     PMID:7622480, 16225868, 16645306, 25012968"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 7622480, 16225868,
                     16645306, 25012968; Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="L-proline betaine and betonicine ABC
                     transporter(ATP-binding protein)"
                     /protein_id="NP_388180.2"
                     /db_xref="EnsemblGenomes-Gn:BSU02980"
                     /db_xref="EnsemblGenomes-Tr:CAB12092"
                     /db_xref="GOA:P46920"
                     /db_xref="InterPro:IPR000644"
                     /db_xref="InterPro:IPR003439"
                     /db_xref="InterPro:IPR003593"
                     /db_xref="InterPro:IPR005892"
                     /db_xref="InterPro:IPR017871"
                     /db_xref="InterPro:IPR027417"
                     /db_xref="SubtiList:BG11370"
                     /db_xref="UniProtKB/Swiss-Prot:P46920"
                     /translation="MSVDEKPIKIKVEKVSKIFGKQTKKAVQMLANGKTKKEILKATG
                     STVGVNQADFEVYDGEIFVIMGLSGSGKSTLVRMLNRLIEPTAGNIYIDGDMITNMSK
                     DQLREVRRKKISMVFQKFALFPHRTILENTEYGLELQGVDKQERQQKALESLKLVGLE
                     GFEHQYPDQLSGGMQQRVGLARALTNDPDILLMDEAFSALDPLIRKDMQDELLDLHDN
                     VGKTIIFITHDLDEALRIGDRIVLMKDGNIVQIGTPEEILMNPSNEYVEKFVEDVDLS
                     KVLTAGHIMKRAETVRIDKGPRVALTLMKNLGISSIYAVDKQKKLLGVIYASDAKKAA
                     ESDLSLQDILNTEFTTVPENTYLTEIFDVVSDANIPIAVVDEKQRMKGIVVRGALIGA
                     LAGNNEYINAEGTNEQTQDPSAQEVK*"
                     /label="opuAA CDS"
     gene            302580..303836
                     /gene="opuAA"
                     /locus_tag="BSU_02980"
                     /old_locus_tag="BSU02980"
                     /label="opuAA gene"
     downshifts      complement(302588)
                     /Source="Nicolas_upshifts"
                     /id="D126"
                     /incds=0
                     /nref=108
                     /ntot=175
                     /MaxReadThrough="2.83797"
                     /MaxDrop="5.18503"
                     /score="2.01231069"
                     /energy="-4.8"
                     /TU="NA"
                     /idTUdmin="U214"
                     /TUdmin="-1826"
                     /isTUend="FALSE"
                     /label="downshifts"
     CDS             303838..304686
                     /gene="opuAB"
                     /locus_tag="BSU_02990"
                     /old_locus_tag="BSU02990"
                     /function="16.1: Circulate"
                     /function="16.8: Protect"
                     /experiment="publication(s) with functional evidences,
                     PMID:8752321, 15849754, 16225868, 16645306, 16850406,
                     25012968"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 8752321, 15849754,
                     16225868, 16645306, 16850406, 25012968; Product type t :
                     transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="L-proline betaine and betonicine ABC
                     transporter(permease)"
                     /protein_id="NP_388181.1"
                     /db_xref="EnsemblGenomes-Gn:BSU02990"
                     /db_xref="EnsemblGenomes-Tr:CAB12093"
                     /db_xref="GOA:P46921"
                     /db_xref="InterPro:IPR000515"
                     /db_xref="InterPro:IPR035906"
                     /db_xref="SubtiList:BG11371"
                     /db_xref="UniProtKB/Swiss-Prot:P46921"
                     /translation="MDRLPRIPLADIIDRFVDWITMTFGGFFDGIANGLAAFVNGIVT
                     GLGFIPSILLTIIFAALAWWISTRGIALFTLIGFLLIDYLGYWDPMLQTLALVLTSVI
                     ISIVVGVPIGIWASQKETVRRIVTPILDLMQTMPAFVYLLPAIFFFNIGVVPGVVASV
                     IFAMPPTIRMTVLGIKQVPADLIEATEAFGSTTAQRLFKVQLPLATKTILAGINQSIM
                     LALSMVVIAAMVGAPGLGSEVYSAVTQLKTGVGVEAGIAIVIVAITLDRITQNIKVKK
                     KSRGNA*"
                     /label="opuAB CDS"
     gene            303838..304686
                     /gene="opuAB"
                     /locus_tag="BSU_02990"
                     /old_locus_tag="BSU02990"
                     /label="opuAB gene"
     CDS             304686..305567
                     /gene="opuAC"
                     /locus_tag="BSU_03000"
                     /old_locus_tag="BSU03000"
                     /function="16.1: Circulate"
                     /function="16.8: Protect"
                     /experiment="publication(s) with functional evidences,
                     PMID:7622480, 16225868, 16645306, 25012968"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 7622480, 16225868,
                     16645306, 25012968; Product type lp: lipoprotein"
                     /codon_start=1
                     /transl_table=11
                     /product="L-proline betaine and betonicine ABC
                     transporterABC transporter (glycine betaine-binding
                     lipoprotein)"
                     /protein_id="NP_388182.1"
                     /db_xref="EnsemblGenomes-Gn:BSU03000"
                     /db_xref="EnsemblGenomes-Tr:CAB12094"
                     /db_xref="GOA:P46922"
                     /db_xref="InterPro:IPR007210"
                     /db_xref="PDB:2B4L"
                     /db_xref="PDB:2B4M"
                     /db_xref="PDB:3CHG"
                     /db_xref="SubtiList:BG11372"
                     /db_xref="UniProtKB/Swiss-Prot:P46922"
                     /translation="MLKKIIGIGVSAMLALSLAACGSENDENASAAEQVNKTIIGIDP
                     GSGIMSLTDKAMKDYDLNDWTLISASSAAMTATLKKSYDRKKPIIITGWTPHWMFSRY
                     KLKYLDDPKQSYGSAEEIHTITRKGFSKEQPNAAKLLSQFKWTQDEMGEIMIKVEEGE
                     KPAKVAAEYVNKHKDQIAEWTKGVQKVKGDKINLAYVAWDSEIASTNVIGKVLEDLGY
                     EVTLTQVEAGPMWTAIATGSADASLSAWLPNTHKAYAAKYKGKYDDIGTSMTGVKMGL
                     VVPQYMKNVNSIEDLKK*"
                     /label="opuAC CDS"
     gene            304686..305567
                     /gene="opuAC"
                     /locus_tag="BSU_03000"
                     /old_locus_tag="BSU03000"
                     /label="opuAC gene"
     downshifts      305548
                     /Source="Nicolas_upshifts"
                     /id="D127"
                     /incds=0
                     /nref=254
                     /ntot=269
                     /MaxReadThrough="0.74967"
                     /MaxDrop="8.21394"
                     /score="33.6263027"
                     /energy="-12.2"
                     /TU="NA"
                     /idTUdmin="U215"
                     /TUdmin=0
                     /isTUend="TRUE"
                     /label="downshifts"
     downshifts      complement(305580)
                     /Source="Nicolas_upshifts"
                     /id="D128"
                     /incds=0
                     /nref=2
                     /ntot=62
                     /MaxReadThrough="4.29566"
                     /MaxDrop="3.9514"
                     /score="29.8489328"
                     /energy="-12.2"
                     /TU="U216"
                     /idTUdmin="U216"
                     /TUdmin="-220"
                     /isTUend="FALSE"
                     /label="downshifts"
     CDS             complement(305605..306756)
                     /gene="amhX"
                     /locus_tag="BSU_03010"
                     /old_locus_tag="BSU03010"
                     /EC_number="3.5.1.-"
                     /function="16.11: Scavenge (Catabolism)"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 8768514; Product type
                     e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative amidohydrolase"
                     /protein_id="NP_388183.2"
                     /db_xref="EnsemblGenomes-Gn:BSU03010"
                     /db_xref="EnsemblGenomes-Tr:CAB12095"
                     /db_xref="GOA:P54983"
                     /db_xref="InterPro:IPR002933"
                     /db_xref="InterPro:IPR011650"
                     /db_xref="InterPro:IPR017439"
                     /db_xref="InterPro:IPR036264"
                     /db_xref="SubtiList:BG11789"
                     /db_xref="UniProtKB/Swiss-Prot:P54983"
                     /translation="MQKLSEEMKQTIMDIFEHLHANPEVSWKEYETTSFLKQKLEDLG
                     CRTRTFSDCTGVVGEIGSGSPVVAVRADIDALWQEVNGTFRANHSCGHDSHMTMALGT
                     LMLLKKQPELPKGTIRFIFQPAEEKGGGALKMIEEGVLDDIDYLYGVHVRPIQETQNG
                     RCAPSILHGSSQHIEGTIIGEEAHGARPHLGKNSIEIAAFLVHKLGLIHIDPQIPHTV
                     KMTKLQAGGESSNIIPGKASFSLDLRAQTNEAMEALIAETERACEAAAAAFGAKIELH
                     KEHSLPAATQNKEAEAIMAEAITEIIGAERLDDPLVTTGGEDFHFYAVKVPNLKTTML
                     GLGCGLQPGLHHPHMTFDRNAMFTGIHILANAVLKTFQKAESLAAANAS*"
                     /label="amhX CDS"
     gene            complement(305605..306756)
                     /gene="amhX"
                     /locus_tag="BSU_03010"
                     /old_locus_tag="BSU03010"
                     /label="amhX gene"
     downshifts      complement(305624)
                     /Source="Nicolas_upshifts"
                     /id="D129"
                     /incds=0
                     /nref=2
                     /ntot=70
                     /MaxReadThrough="4.33606"
                     /MaxDrop="3.5225"
                     /score="29.8489328"
                     /energy="-12.2"
                     /TU="U216"
                     /idTUdmin="U216"
                     /TUdmin="-264"
                     /isTUend="FALSE"
                     /label="downshifts"
     S_feature       complement(306757..306844)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_325190_325277_c"
                     /HighExp="Etha, T1.30H, M9-stat, T2.30H, S1, T3.30H,
                     T5.0H, T4.0H, Sw, T3.0H"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig=1
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S107"
     promotor_-35    306812..306819
                     /Source="Nicolas_upshift_promotors"
                     /id="U217"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.758241758241758"
                     /psig="0.999000999001"
                     /xcortree=2902
                     /SigmaFactorBS="atttttaccttctttactttatttaTATTGAAAcaggaagat
                     aggctGTATATAATATAGCACATATtgctactattcagaataattaatattttcaaac
                     a"
                     /listShort="ycgA"
                     /listLong="ycgB, S108, amyE"
                     /label="promotor_-35"
     promotor_-10    complement(306831..306850)
                     /Source="Nicolas_upshift_promotors"
                     /id="U216"
                     /multdbtbs="SigA"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.632367632367632"
                     /psig=1
                     /xcortree=2878
                     /SigmaFactorBS="tttcgatccatcccctctgtttgaaaatattaattATTCTGA
                     atagtagcaataTGTGCTATATTATATACAGCctatcttcctgtttcaatataaataa
                     a"
                     /listShort="S107, amhX"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     promotor_-10    306834..306853
                     /Source="Nicolas_upshift_promotors"
                     /id="U217"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.758241758241758"
                     /psig="0.999000999001"
                     /xcortree=2902
                     /SigmaFactorBS="atttttaccttctttactttatttaTATTGAAAcaggaagat
                     aggctGTATATAATATAGCACATATtgctactattcagaataattaatattttcaaac
                     a"
                     /listShort="ycgA"
                     /listLong="ycgB, S108, amyE"
                     /label="promotor_-10"
     upshifts        complement(306844)
                     /Source="Nicolas_upshifts"
                     /id="U216"
                     /multdbtbs="SigA"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.632367632367632"
                     /psig=1
                     /xcortree=2878
                     /SigmaFactorBS="tttcgatccatcccctctgtttgaaaatattaattATTCTGA
                     atagtagcaataTGTGCTATATTATATACAGCctatcttcctgtttcaatataaataa
                     a"
                     /listShort="S107, amhX"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     upshifts        306847
                     /Source="Nicolas_upshifts"
                     /id="U217"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.758241758241758"
                     /psig="0.999000999001"
                     /xcortree=2902
                     /SigmaFactorBS="atttttaccttctttactttatttaTATTGAAAcaggaagat
                     aggctGTATATAATATAGCACATATtgctactattcagaataattaatattttcaaac
                     a"
                     /listShort="ycgA"
                     /listLong="ycgB, S108, amyE"
                     /label="upshifts"
     promotor_-35    complement(306863..306869)
                     /Source="Nicolas_upshift_promotors"
                     /id="U216"
                     /multdbtbs="SigA"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.632367632367632"
                     /psig=1
                     /xcortree=2878
                     /SigmaFactorBS="tttcgatccatcccctctgtttgaaaatattaattATTCTGA
                     atagtagcaataTGTGCTATATTATATACAGCctatcttcctgtttcaatataaataa
                     a"
                     /listShort="S107, amhX"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             306906..308339
                     /gene="ycgA"
                     /locus_tag="BSU_03020"
                     /old_locus_tag="BSU03020"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 15849754, 16850406,
                     21747963, 21764931; Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="putative branched chain amino acid permease"
                     /protein_id="NP_388184.2"
                     /db_xref="EnsemblGenomes-Gn:BSU03020"
                     /db_xref="EnsemblGenomes-Tr:CAB12096"
                     /db_xref="GOA:P55908"
                     /db_xref="InterPro:IPR018385"
                     /db_xref="SubtiList:BG11999"
                     /db_xref="UniProtKB/Swiss-Prot:P55908"
                     /translation="MSMPAAETQPKKKRMTFKMPDAYVLLFMIAFICAIASYIVPAGE
                     FDRVTKGDVTTAVPGSYHSIEQSPVRLISFFTSLQDGMVGSAPIIFLILFTGGTIAIL
                     EKTGAINGLIYNVISKFRTKQLLFICIVGALFSILGTTGIVVNSVIGFIPIGLIVARS
                     LKWDAVAGAAVIYIGCYAGFNSTILSPSPLGLSQSIAELPLFSGIGLRVVIYICFLLS
                     SIIYIYLYTRKLKKSKDASVLGTDWFPAAGMGEAGKEEDQSVPFTVRHKLILAVAGLS
                     LVGFLYGALKLGWSDSQMAATFIFISVLAGLIGGLAANDIAKTFITGCQSLVYGALIV
                     GMARSISVILENGKLLDTVVNALASLLDGFSPIAGAIGMYIASALLHFLISSGSGEAV
                     VFIPILAPLADLMGITRQVAVEAVMLGEGVVNCVNPTSGVLMAVLAASGIPYVKWLRF
                     MVPLALIWFLIGLVFIVIGVMINWGPF*"
                     /label="ycgA CDS"
     gene            306906..308339
                     /gene="ycgA"
                     /locus_tag="BSU_03020"
                     /old_locus_tag="BSU03020"
                     /label="ycgA gene"
     promotor_-35    307644..307652
                     /Source="Nicolas_upshift_promotors"
                     /id="U218"
                     /multdbtbs="-"
                     /comp="M1"
                     /sig="SigH"
                     /pcomp="0.98901098901099"
                     /psig="0.98901098901099"
                     /xcortree=498
                     /SigmaFactorBS="ggaacagattggttccctgcgGCAGGAATGggcgaagccggT
                     AAAGAAGAAGATCAGTCAgtgccgtttaccgttcgccataagctgattttggctgtgg
                     c"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    307664..307682
                     /Source="Nicolas_upshift_promotors"
                     /id="U218"
                     /multdbtbs="-"
                     /comp="M1"
                     /sig="SigH"
                     /pcomp="0.98901098901099"
                     /psig="0.98901098901099"
                     /xcortree=498
                     /SigmaFactorBS="ggaacagattggttccctgcgGCAGGAATGggcgaagccggT
                     AAAGAAGAAGATCAGTCAgtgccgtttaccgttcgccataagctgattttggctgtgg
                     c"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        307683
                     /Source="Nicolas_upshifts"
                     /id="U218"
                     /multdbtbs="-"
                     /comp="M1"
                     /sig="SigH"
                     /pcomp="0.98901098901099"
                     /psig="0.98901098901099"
                     /xcortree=498
                     /SigmaFactorBS="ggaacagattggttccctgcgGCAGGAATGggcgaagccggT
                     AAAGAAGAAGATCAGTCAgtgccgtttaccgttcgccataagctgattttggctgtgg
                     c"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     downshifts      308321
                     /Source="Nicolas_upshifts"
                     /id="D130"
                     /incds=0
                     /nref=1
                     /ntot=74
                     /MaxReadThrough="3.53497"
                     /MaxDrop="3.31444"
                     /score="12.0135493"
                     /energy="-15.6"
                     /TU="U217"
                     /idTUdmin="U218"
                     /TUdmin=0
                     /isTUend="TRUE"
                     /label="downshifts"
     promotor_-35    308382..308389
                     /Source="Nicolas_upshift_promotors"
                     /id="U219"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.915084915084915"
                     /psig="0.999000999001"
                     /xcortree=1929
                     /SigmaFactorBS="ccggcttgtacggcgggcttttgagttatTCATTGCAgaagc
                     gcaggctgtTATTGTAACATGTAAGCCATaagccattcgtaaaagtgcgggaggaagg
                     t"
                     /listShort="ycgB, S108, amyE"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    308404..308423
                     /Source="Nicolas_upshift_promotors"
                     /id="U219"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.915084915084915"
                     /psig="0.999000999001"
                     /xcortree=1929
                     /SigmaFactorBS="ccggcttgtacggcgggcttttgagttatTCATTGCAgaagc
                     gcaggctgtTATTGTAACATGTAAGCCATaagccattcgtaaaagtgcgggaggaagg
                     t"
                     /listShort="ycgB, S108, amyE"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        308413
                     /Source="Nicolas_upshifts"
                     /id="U219"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.915084915084915"
                     /psig="0.999000999001"
                     /xcortree=1929
                     /SigmaFactorBS="ccggcttgtacggcgggcttttgagttatTCATTGCAgaagc
                     gcaggctgtTATTGTAACATGTAAGCCATaagccattcgtaaaagtgcgggaggaagg
                     t"
                     /listShort="ycgB, S108, amyE"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             308455..309036
                     /gene="ycgB"
                     /locus_tag="BSU_03030"
                     /old_locus_tag="BSU03030"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms; PubMedId: 15849754, 16850406, 22720735;
                     Producttype m: membrane component"
                     /codon_start=1
                     /transl_table=11
                     /product="putative integral inner membrane protein of
                     unknown function"
                     /protein_id="NP_388185.2"
                     /db_xref="EnsemblGenomes-Gn:BSU03030"
                     /db_xref="EnsemblGenomes-Tr:CAB12097"
                     /db_xref="SubtiList:BG12000"
                     /db_xref="UniProtKB/Swiss-Prot:P55909"
                     /translation="MNNLRNRLSGVNGKNKRVKEKEQKIWSEIGMIAGAFALLDVIIR
                     GIMFEFPFKEWAASLVFLFIIILYYCIRAAASGMLMPRIDTKEELQKRVKQQRIESIA
                     VAFAVVVLTMYDRGIPHTFFAWLKMILLFIVCGGVLFLLRYVIVKLAYRRAVKEEIKK
                     KSSFLFGKRGKRSQFRAAFFIGTLICIHSAKLF*"
                     /label="ycgB CDS"
     gene            308455..309036
                     /gene="ycgB"
                     /locus_tag="BSU_03030"
                     /old_locus_tag="BSU03030"
                     /label="ycgB gene"
     upshifts        308849
                     /Source="Nicolas_upshifts"
                     /id="U220"
                     /multdbtbs="-"
                     /comp="M21"
                     /sig="Sig-"
                     /pcomp="0.288711288711289"
                     /psig="0.241758241758242"
                     /xcortree=1550
                     /SigmaFactorBS="tgtacgacagggggattccccatacattcttcgcttggctga
                     aaatgattcttctttttatcgtCTGCGgcggcgttctgtttctgcttcggtatgtgat
                     t"
                     /listShort="S108, amyE"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     misc_feature    308853..308857
                     /Source="Nicolas_upshift_promotors"
                     /id="U220"
                     /multdbtbs="-"
                     /comp="M21"
                     /sig="Sig-"
                     /pcomp="0.288711288711289"
                     /psig="0.241758241758242"
                     /xcortree=1550
                     /SigmaFactorBS="tgtacgacagggggattccccatacattcttcgcttggctga
                     aaatgattcttctttttatcgtCTGCGgcggcgttctgtttctgcttcggtatgtgat
                     t"
                     /listShort="S108, amyE"
                     /GFF_Attribute="listLong"
                     /label="promotor_single_box"
                     /note="Geneious type: promotor_single_box"
     promotor_-35    309012..309019
                     /Source="Nicolas_upshift_promotors"
                     /id="U221"
                     /multdbtbs="SigA"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.892107892107892"
                     /psig="0.999000999001"
                     /xcortree=365
                     /SigmaFactorBS="ctttttttataggaacattgatttgTATTCACTctgccaagt
                     tgtttTGATAGAGTGATTGTGATAAttttaaatgtaagcgttaacaaaattctccagt
                     c"
                     /listShort="S108, amyE"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    309034..309053
                     /Source="Nicolas_upshift_promotors"
                     /id="U221"
                     /multdbtbs="SigA"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.892107892107892"
                     /psig="0.999000999001"
                     /xcortree=365
                     /SigmaFactorBS="ctttttttataggaacattgatttgTATTCACTctgccaagt
                     tgtttTGATAGAGTGATTGTGATAAttttaaatgtaagcgttaacaaaattctccagt
                     c"
                     /listShort="S108, amyE"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     S_feature       309047..309184
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_327480_327617"
                     /HighExp="BC, M0t90, M40t90, S2, M9-stat, T4.0H, Sw,
                     T3.30H, Lbtran, T3.0H"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA, Sig-, SigA"
                     /TUshortPSig="0.999, 0.242, 0.999"
                     /TUlongSig="SigA"
                     /TUlongPSig="0.999"
                     /label="S108"
     upshifts        309047
                     /Source="Nicolas_upshifts"
                     /id="U221"
                     /multdbtbs="SigA"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.892107892107892"
                     /psig="0.999000999001"
                     /xcortree=365
                     /SigmaFactorBS="ctttttttataggaacattgatttgTATTCACTctgccaagt
                     tgtttTGATAGAGTGATTGTGATAAttttaaatgtaagcgttaacaaaattctccagt
                     c"
                     /listShort="S108, amyE"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             309185..311164
                     /gene="amyE"
                     /locus_tag="BSU_03040"
                     /old_locus_tag="BSU03040"
                     /EC_number="3.2.1.1"
                     /function="16.11: Scavenge (Catabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:3117969, 9353930"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 3117969, 9353930; Product
                     type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-amylase"
                     /protein_id="NP_388186.2"
                     /db_xref="EnsemblGenomes-Gn:BSU03040"
                     /db_xref="EnsemblGenomes-Tr:CAB12098"
                     /db_xref="GOA:P00691"
                     /db_xref="InterPro:IPR006046"
                     /db_xref="InterPro:IPR006047"
                     /db_xref="InterPro:IPR013783"
                     /db_xref="InterPro:IPR017853"
                     /db_xref="InterPro:IPR031319"
                     /db_xref="InterPro:IPR031965"
                     /db_xref="PDB:1BAG"
                     /db_xref="PDB:1UA7"
                     /db_xref="SubtiList:BG10473"
                     /db_xref="UniProtKB/Swiss-Prot:P00691"
                     /translation="MFAKRFKTSLLPLFAGFLLLFHLVLAGPAAASAETANKSNELTA
                     PSIKSGTILHAWNWSFNTLKHNMKDIHDAGYTAIQTSPINQVKEGNQGDKSMSNWYWL
                     YQPTSYQIGNRYLGTEQEFKEMCAAAEEYGIKVIVDAVINHTTSDYAAISNEVKSIPN
                     WTHGNTQIKNWSDRWDVTQNSLLGLYDWNTQNTQVQSYLKRFLDRALNDGADGFRFDA
                     AKHIELPDDGSYGSQFWPNITNTSAEFQYGEILQDSASRDAAYANYMDVTASNYGHSI
                     RSALKNRNLGVSNISHYASDVSADKLVTWVESHDTYANDDEESTWMSDDDIRLGWAVI
                     ASRSGSTPLFFSRPEGGGNGVRFPGKSQIGDRGSALFEDQAITAVNRFHNVMAGQPEE
                     LSNPNGNNQIFMNQRGSHGVVLANAGSSSVSINTATKLPDGRYDNKAGAGSFQVNDGK
                     LTGTINARSVAVLYPDDIAKAPHVFLENYKTGVTHSFNDQLTITLRADANTTKAVYQI
                     NNGPETAFKDGDQFTIGKGDPFGKTYTIMLKGTNSDGVTRTEKYSFVKRDPASAKTIG
                     YQNPNHWSQVNAYIYKHDGSRVIELTGSWPGKPMTKNADGIYTLTLPADTDTTNAKVI
                     FNNGSAQVPGQNQPGFDYVLNGLYNDSGLSGSLPH*"
                     /label="amyE CDS"
     gene            309185..311164
                     /gene="amyE"
                     /locus_tag="BSU_03040"
                     /old_locus_tag="BSU03040"
                     /label="amyE gene"
     downshifts      311178
                     /Source="Nicolas_upshifts"
                     /id="D131"
                     /incds=0
                     /nref=57
                     /ntot=131
                     /MaxReadThrough="1.64783"
                     /MaxDrop="6.55823"
                     /score="-8.82332571"
                     /energy="-3.4"
                     /TU="U221"
                     /idTUdmin="U219"
                     /TUdmin=0
                     /isTUend="TRUE"
                     /label="downshifts"
     promotor_-35    311244..311251
                     /Source="Nicolas_upshift_promotors"
                     /id="U222"
                     /multdbtbs="SigA"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.753246753246753"
                     /psig=1
                     /xcortree=1599
                     /SigmaFactorBS="caatgatggtttcttttttgttcataaatcagacaaaacttt
                     tCTCTTGCAaaagtttgtgaagTGTTGCACAATATAAATGTGaaatacttcacaaaca
                     a"
                     /listShort="ldh, lctP"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     upshifts        311261
                     /Source="Nicolas_upshifts"
                     /id="U222"
                     /multdbtbs="SigA"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.753246753246753"
                     /psig=1
                     /xcortree=1599
                     /SigmaFactorBS="caatgatggtttcttttttgttcataaatcagacaaaacttt
                     tCTCTTGCAaaagtttgtgaagTGTTGCACAATATAAATGTGaaatacttcacaaaca
                     a"
                     /listShort="ldh, lctP"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-10    311265..311284
                     /Source="Nicolas_upshift_promotors"
                     /id="U222"
                     /multdbtbs="SigA"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.753246753246753"
                     /psig=1
                     /xcortree=1599
                     /SigmaFactorBS="caatgatggtttcttttttgttcataaatcagacaaaacttt
                     tCTCTTGCAaaagtttgtgaagTGTTGCACAATATAAATGTGaaatacttcacaaaca
                     a"
                     /listShort="ldh, lctP"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     CDS             311341..312306
                     /gene="lctE"
                     /locus_tag="BSU_03050"
                     /old_locus_tag="BSU03050"
                     /EC_number="1.1.1.27"
                     /function="16.10: Respire"
                     /experiment="publication(s) with functional evidences,
                     PMID:10809684, 16207915, 19383131"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 10809684, 16207915,
                     19383131; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="L-lactate dehydrogenase"
                     /protein_id="NP_388187.2"
                     /db_xref="EnsemblGenomes-Gn:BSU03050"
                     /db_xref="EnsemblGenomes-Tr:CAB12099"
                     /db_xref="GOA:P13714"
                     /db_xref="InterPro:IPR001236"
                     /db_xref="InterPro:IPR001557"
                     /db_xref="InterPro:IPR011304"
                     /db_xref="InterPro:IPR015955"
                     /db_xref="InterPro:IPR018177"
                     /db_xref="InterPro:IPR022383"
                     /db_xref="InterPro:IPR036291"
                     /db_xref="PDB:3PQD"
                     /db_xref="PDB:3PQE"
                     /db_xref="PDB:3PQF"
                     /db_xref="SubtiList:BG19003"
                     /db_xref="UniProtKB/Swiss-Prot:P13714"
                     /translation="MMNKHVNKVALIGAGFVGSSYAFALINQGITDELVVIDVNKEKA
                     MGDVMDLNHGKAFAPQPVKTSYGTYEDCKDADIVCICAGANQKPGETRLELVEKNLKI
                     FKGIVSEVMASGFDGIFLVATNPVDILTYATWKFSGLPKERVIGSGTTLDSARFRFML
                     SEYFGAAPQNVHAHIIGEHGDTELPVWSHANVGGVPVSELVEKNDAYKQEELDQIVDD
                     VKNAAYHIIEKKGATYYGVAMSLARITKAILHNENSILTVSTYLDGQYGADDVYIGVP
                     AVVNRGGIAGITELNLNEKEKEQFLHSAGVLKNILKPHFAEQKVN*"
                     /label="lctE CDS"
     gene            311341..312306
                     /gene="lctE"
                     /locus_tag="BSU_03050"
                     /old_locus_tag="BSU03050"
                     /label="lctE gene"
     CDS             312338..313963
                     /gene="lctP"
                     /locus_tag="BSU_03060"
                     /old_locus_tag="BSU03060"
                     /function="16.1: Circulate"
                     /experiment="publication(s) with functional evidences,
                     PMID:10809684, 15849754, 16428414, 16850406"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 10809684, 15849754,
                     16428414, 16850406; Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="L-lactate permease"
                     /protein_id="NP_388188.2"
                     /db_xref="EnsemblGenomes-Gn:BSU03060"
                     /db_xref="EnsemblGenomes-Tr:CAB12100"
                     /db_xref="GOA:P55910"
                     /db_xref="InterPro:IPR003804"
                     /db_xref="SubtiList:BG12001"
                     /db_xref="UniProtKB/Swiss-Prot:P55910"
                     /translation="MWEQLYDPFGNEYVSALVALTPILFFLLALTVLKMKGILAAFLT
                     LAVSFFVSVWAFHMPVEKAISSVLLGIGSGLWPIGYIVLMAVWLYKIAVKTGKFTIIR
                     SSIAGISPDQRLQLLLIGFCFNAFLEGAAGFGVPIAISAALLVELGFKPLKAAALCLI
                     ANAASGAFGAIGIPVITGAQIGDLSALELSRTLMWTLPMISFLIPFLLVFLLDRMKGI
                     KQTWPALLVVSGGYTAVQTLTMAVLGPELANILAALFSMGGLALFLRKWQPKEIYREE
                     GAGDAGEKKAYRAADIAKAWSPFYILTAAITIWSLPAFKALFQEGGLLYQSTLLFKMP
                     FLHQQIMKMPPIAPSAMPLDAVFKVDLLSATGTAILAAVIVTGLFSKKFSSRDAFASL
                     KETGKELWVPIMTICFVMGFANLANFAGLSSSIGLALAKTGDLFPFVSPVLGWIGVFI
                     TGSVVSNNALFGHLQVVTGAQIGAGSDLLLAANTAGGVMAKLVSPQSIAIAAAAVGQT
                     GKESKLFKRTVAYSLILLLIICIWTFILARLGV*"
                     /label="lctP CDS"
     gene            312338..313963
                     /gene="lctP"
                     /locus_tag="BSU_03060"
                     /old_locus_tag="BSU03060"
                     /label="lctP gene"
     downshifts      312344
                     /Source="Nicolas_upshifts"
                     /id="D132"
                     /incds=0
                     /nref=1
                     /ntot=16
                     /MaxReadThrough="8.56142"
                     /MaxDrop="2.8862"
                     /score="-8.82332571"
                     /energy="-3.4"
                     /TU="U222"
                     /idTUdmin="U221"
                     /TUdmin=1144
                     /isTUend="FALSE"
                     /label="downshifts"
     downshifts      313950
                     /Source="Nicolas_upshifts"
                     /id="D133"
                     /incds=0
                     /nref=51
                     /ntot=118
                     /MaxReadThrough="2.31168"
                     /MaxDrop="7.73065"
                     /score="39.575264"
                     /energy="-15.6"
                     /TU="NA"
                     /idTUdmin="U222"
                     /TUdmin=0
                     /isTUend="TRUE"
                     /label="downshifts"
     CDS             complement(314008..315546)
                     /gene="mdr"
                     /locus_tag="BSU_03070"
                     /old_locus_tag="BSU03070"
                     /function="16.1: Circulate"
                     /function="16.8: Protect"
                     /experiment="publication(s) with functional evidences,
                     PMID:9023234, 15489457, 15849754, 16850406, 21690368"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 9023234, 15489457,
                     15849754, 16850406, 21690368; Product type t :
                     transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug-efflux transporter"
                     /protein_id="NP_388189.2"
                     /db_xref="EnsemblGenomes-Gn:BSU03070"
                     /db_xref="EnsemblGenomes-Tr:CAB12101"
                     /db_xref="GOA:P96712"
                     /db_xref="InterPro:IPR004638"
                     /db_xref="InterPro:IPR011701"
                     /db_xref="InterPro:IPR020846"
                     /db_xref="InterPro:IPR036259"
                     /db_xref="SubtiList:BG12002"
                     /db_xref="UniProtKB/Swiss-Prot:P96712"
                     /translation="MDTTTAKQASTKFVVLGLLLGILMSAMDNTIVATAMGNIVADLG
                     SFDKFAWVTASYMVAVMAGMPIYGKLSDMYGRKRFFLFGLIFFLIGSALCGIAQTMNQ
                     LIIFRAIQGIGGGALLPIAFTIIFDLFPPEKRGKMSGMFGAVFGLSSVLGPLLGAIIT
                     DSISWHWVFYINVPIGALSLFFIIRYYKESLEHRKQKIDWGGAITLVVSIVCLMFALE
                     LGGKTYDWNSIQIIGLFIVFAVFFIAFFIVERKAEEPIISFWMFKNRLFATAQILAFL
                     YGGTFIILAVFIPIFVQAVYGSSATSAGFILTPMMIGSVIGSMIGGIFQTKASFRNLM
                     LISVIAFFIGMLLLSNMTPDTARVWLTVFMMISGFGVGFNFSLLPAASMNDLEPRFRG
                     TANSTNSFLRSFGMTLGVTIFGTVQTNVFTNKLNDAFSGMKGSAGSGAAQNIGDPQEI
                     FQAGTRSQIPDAILNRIIDAMSSSITYVFLLALIPIVLAAVTILFMGKARVKTTAEMT
                     KKAN*"
                     /label="mdr CDS"
     gene            complement(314008..315546)
                     /gene="mdr"
                     /locus_tag="BSU_03070"
                     /old_locus_tag="BSU03070"
                     /label="mdr gene"
     downshifts      complement(314026)
                     /Source="Nicolas_upshifts"
                     /id="D134"
                     /incds=0
                     /nref=70
                     /ntot=182
                     /MaxReadThrough="1.04964"
                     /MaxDrop="4.53635"
                     /score="30.8374042"
                     /energy="-15.6"
                     /TU="NA"
                     /idTUdmin="U225"
                     /TUdmin=0
                     /isTUend="TRUE"
                     /label="downshifts"
     promotor_no_box complement(314600..314700)
                     /Source="Nicolas_upshift_promotors"
                     /id="U223"
                     /multdbtbs="-"
                     /comp="M13"
                     /sig="Sig-"
                     /pcomp="0.495504495504495"
                     /psig="0.002997002997003"
                     /xcortree=1728
                     /SigmaFactorBS="attttagcggtatttattccgattttcgttcaggcggtctac
                     ggcagctcggcgacaagcgcgggcttcattctgacgccgatgatgattggatcagtca
                     t"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_no_box"
     upshifts        complement(314640)
                     /Source="Nicolas_upshifts"
                     /id="U223"
                     /multdbtbs="-"
                     /comp="M13"
                     /sig="Sig-"
                     /pcomp="0.495504495504495"
                     /psig="0.002997002997003"
                     /xcortree=1728
                     /SigmaFactorBS="attttagcggtatttattccgattttcgttcaggcggtctac
                     ggcagctcggcgacaagcgcgggcttcattctgacgccgatgatgattggatcagtca
                     t"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    315560..315564
                     /Source="Nicolas_upshift_promotors"
                     /id="U224"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.772227772227772"
                     /psig="0.971028971028971"
                     /xcortree=2583
                     /SigmaFactorBS="ttgttgtgtccatttgttctacctccTCTTActtttctatgt
                     aagtTCTGATATCATGATAATAGTttgattgttgaatatctcgattatcaagataaac
                     t"
                     /listShort="ycgE, ycgF, ycgG"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    315580..315599
                     /Source="Nicolas_upshift_promotors"
                     /id="U224"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.772227772227772"
                     /psig="0.971028971028971"
                     /xcortree=2583
                     /SigmaFactorBS="ttgttgtgtccatttgttctacctccTCTTActtttctatgt
                     aagtTCTGATATCATGATAATAGTttgattgttgaatatctcgattatcaagataaac
                     t"
                     /listShort="ycgE, ycgF, ycgG"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        315594
                     /Source="Nicolas_upshifts"
                     /id="U224"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.772227772227772"
                     /psig="0.971028971028971"
                     /xcortree=2583
                     /SigmaFactorBS="ttgttgtgtccatttgttctacctccTCTTActtttctatgt
                     aagtTCTGATATCATGATAATAGTttgattgttgaatatctcgattatcaagataaac
                     t"
                     /listShort="ycgE, ycgF, ycgG"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-10    complement(315626..315645)
                     /Source="Nicolas_upshift_promotors"
                     /id="U225"
                     /multdbtbs="-"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp="0.501498501498502"
                     /psig="0.999000999001"
                     /xcortree=2540
                     /SigmaFactorBS="ccaactcacttctggaatttcttGTTGACAactgacagtcct
                     ccCTATAAAATCGAGTTTATCTtgataatcgagatattcaacaatcaaactattatca
                     t"
                     /listShort="mdr"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(315629)
                     /Source="Nicolas_upshifts"
                     /id="U225"
                     /multdbtbs="-"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp="0.501498501498502"
                     /psig="0.999000999001"
                     /xcortree=2540
                     /SigmaFactorBS="ccaactcacttctggaatttcttGTTGACAactgacagtcct
                     ccCTATAAAATCGAGTTTATCTtgataatcgagatattcaacaatcaaactattatca
                     t"
                     /listShort="mdr"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             315659..316123
                     /gene="ycgE"
                     /locus_tag="BSU_03080"
                     /old_locus_tag="BSU03080"
                     /function="16.3: Control"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; Product type r: regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="putative transcriptional regulator"
                     /protein_id="NP_388190.2"
                     /db_xref="EnsemblGenomes-Gn:BSU03080"
                     /db_xref="EnsemblGenomes-Tr:CAB12102"
                     /db_xref="GOA:O31472"
                     /db_xref="InterPro:IPR000835"
                     /db_xref="InterPro:IPR011991"
                     /db_xref="InterPro:IPR036388"
                     /db_xref="InterPro:IPR036390"
                     /db_xref="SubtiList:BG12003"
                     /db_xref="UniProtKB/Swiss-Prot:O31472"
                     /translation="MSTRNSRSELEKTAVQLFRKLGTRTVLFHQAAAQALGLFPTDLK
                     SADILNEAGPMTAGELGKKTGLSTGSVTALVDRLEKAGYVAREKDPNDRRRVVIVPLT
                     ASKKHIKDLFRPLSESTMDLCREYTEEELELIFSFVGKAADIMEEELERLKQ*"
                     /label="ycgE CDS"
     gene            315659..316123
                     /gene="ycgE"
                     /locus_tag="BSU_03080"
                     /old_locus_tag="BSU03080"
                     /label="ycgE gene"
     promotor_-35    complement(315660..315666)
                     /Source="Nicolas_upshift_promotors"
                     /id="U225"
                     /multdbtbs="-"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp="0.501498501498502"
                     /psig="0.999000999001"
                     /xcortree=2540
                     /SigmaFactorBS="ccaactcacttctggaatttcttGTTGACAactgacagtcct
                     ccCTATAAAATCGAGTTTATCTtgataatcgagatattcaacaatcaaactattatca
                     t"
                     /listShort="mdr"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-35    316133..316138
                     /Source="Nicolas_upshift_promotors"
                     /id="U226"
                     /multdbtbs="SigE"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp=1
                     /psig=1
                     /xcortree=970
                     /SigmaFactorBS="ttgaacgtctgaaacagtaagtgaatttgTGCATAgcttggc
                     ccgttcccGAATAAATTGTACAAGTTAcataagagaagggagtacgggccggtgaaca
                     t"
                     /listShort="ycgF, ycgG"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    316154..316172
                     /Source="Nicolas_upshift_promotors"
                     /id="U226"
                     /multdbtbs="SigE"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp=1
                     /psig=1
                     /xcortree=970
                     /SigmaFactorBS="ttgaacgtctgaaacagtaagtgaatttgTGCATAgcttggc
                     ccgttcccGAATAAATTGTACAAGTTAcataagagaagggagtacgggccggtgaaca
                     t"
                     /listShort="ycgF, ycgG"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        316164
                     /Source="Nicolas_upshifts"
                     /id="U226"
                     /multdbtbs="SigE"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp=1
                     /psig=1
                     /xcortree=970
                     /SigmaFactorBS="ttgaacgtctgaaacagtaagtgaatttgTGCATAgcttggc
                     ccgttcccGAATAAATTGTACAAGTTAcataagagaagggagtacgggccggtgaaca
                     t"
                     /listShort="ycgF, ycgG"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             316197..316826
                     /gene="ycgF"
                     /locus_tag="BSU_03090"
                     /old_locus_tag="BSU03090"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 15849754, 16850406;
                     Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="putative aminoacid export permease"
                     /protein_id="NP_388191.1"
                     /db_xref="EnsemblGenomes-Gn:BSU03090"
                     /db_xref="EnsemblGenomes-Tr:CAB12103"
                     /db_xref="GOA:P94381"
                     /db_xref="InterPro:IPR001123"
                     /db_xref="SubtiList:BG12004"
                     /db_xref="UniProtKB/Swiss-Prot:P94381"
                     /translation="MNIFLSYIVLGLSLSAPVGPVNAAQIDKGIKNGFWHAWIFGLGA
                     MTADGLYMLFIYFGLSQFLTAPFVKTFLWLFGFFVLTYTGIETLKNVREPMDVRSSRG
                     KPSYRKTFASGFLISLSNPLSILFWLGIYGSILAKTAEAYNMNQLLIYSSGIMIGILI
                     WDFCMAITASTFRNLLHEKLLRGLTGIAGVSLLVFGFYFGYQGIKQLLG*"
                     /label="ycgF CDS"
     gene            316197..316826
                     /gene="ycgF"
                     /locus_tag="BSU_03090"
                     /old_locus_tag="BSU03090"
                     /label="ycgF gene"
     promotor_-35    316837..316846
                     /Source="Nicolas_upshift_promotors"
                     /id="U227"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp="0.997002997002997"
                     /psig="0.997002997002997"
                     /xcortree=1281
                     /SigmaFactorBS="caaacagttattgggctgattcatgaaggACAGTCACCTgcc
                     gcttccagttTTAATATAGTATCCAGATGAtactggaggtggatcaatggtgaatggg
                     a"
                     /listShort="ycgG"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    316860..316879
                     /Source="Nicolas_upshift_promotors"
                     /id="U227"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp="0.997002997002997"
                     /psig="0.997002997002997"
                     /xcortree=1281
                     /SigmaFactorBS="caaacagttattgggctgattcatgaaggACAGTCACCTgcc
                     gcttccagttTTAATATAGTATCCAGATGAtactggaggtggatcaatggtgaatggg
                     a"
                     /listShort="ycgG"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        316868
                     /Source="Nicolas_upshifts"
                     /id="U227"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp="0.997002997002997"
                     /psig="0.997002997002997"
                     /xcortree=1281
                     /SigmaFactorBS="caaacagttattgggctgattcatgaaggACAGTCACCTgcc
                     gcttccagttTTAATATAGTATCCAGATGAtactggaggtggatcaatggtgaatggg
                     a"
                     /listShort="ycgG"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             316896..317657
                     /gene="ycgG"
                     /locus_tag="BSU_03100"
                     /old_locus_tag="BSU03100"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved protein of unknown function (similar
                     to phage protein)"
                     /protein_id="NP_388192.2"
                     /db_xref="EnsemblGenomes-Gn:BSU03100"
                     /db_xref="EnsemblGenomes-Tr:CAB12104"
                     /db_xref="InterPro:IPR014988"
                     /db_xref="SubtiList:BG12005"
                     /db_xref="UniProtKB/Swiss-Prot:P94382"
                     /translation="MVNGIYTKSFLERIQEELPEWQRIAFELLAETLGDDADTFPCIP
                     GRQAFLTDQLRIAFAGDPRENRTAEELAPLLAEYGKISRDTGKYASLVVLFDTPEDLA
                     EHYSIEAYEELFWRFLNRLSHQDEKEWPEDIPADPEHYKWEFCFDGEPYFILCATPGH
                     EARRSRSFPFFMVTFQPRWVFDDLNGSTAFGRNMSRLIRSRLEAYDQAPIHPQLGWYG
                     GKDNREWKQYFLRDDEKQVSKCPFSYLKNMFNKMK*"
                     /label="ycgG CDS"
     gene            316896..317657
                     /gene="ycgG"
                     /locus_tag="BSU_03100"
                     /old_locus_tag="BSU03100"
                     /label="ycgG gene"
     S_feature       complement(317296..317658)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_335729_336091_c"
                     /HighExp="S8, S7, S5, S6, S4, nit, ferm, BT, Pyr, G/S"
                     /AntisenseName="ycgG"
                     /AntisenseCor="0.73875580854115197"
                     /AntisenseRegPval="-46.9"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigGF"
                     /TUshortPSig=1
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S109"
     downshifts      317654
                     /Source="Nicolas_upshifts"
                     /id="D135"
                     /incds=0
                     /nref=21
                     /ntot=174
                     /MaxReadThrough="1.53211"
                     /MaxDrop="4.92685"
                     /score="6.36985882"
                     /energy="-8.6"
                     /TU="NA"
                     /idTUdmin="U227"
                     /TUdmin="-6"
                     /isTUend="TRUE"
                     /label="downshifts"
     CDS             complement(317659..318999)
                     /gene="ycgH"
                     /locus_tag="BSU_03110"
                     /old_locus_tag="BSU03110"
                     /function="16.1: Circulate"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 15849754, 16850406;
                     Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="putative amino acid transporter"
                     /protein_id="NP_388193.2"
                     /db_xref="EnsemblGenomes-Gn:BSU03110"
                     /db_xref="EnsemblGenomes-Tr:CAB12105"
                     /db_xref="GOA:P94383"
                     /db_xref="InterPro:IPR002293"
                     /db_xref="InterPro:IPR004841"
                     /db_xref="SubtiList:BG12006"
                     /db_xref="UniProtKB/Swiss-Prot:P94383"
                     /translation="MSQTKKDQPKGNLAWWQLSLIGVGCTIGTGFFLGSSIAIVKSGF
                     SVLLSFLIAGIGTYFVFEQLAKLSAKQPEKGSFCAYARKAFGKWAGFSNGWVYWTSEM
                     LITGSQLTAISLFTKHWFPQVPLWVFASIYAVLGLLIIFTGLSVFEKTENVLAVIKTA
                     AIFMFIVIAILALCGILSGGNHGIHVPNKTSEFFPYGAMGLWTGLIYAFYAFGGIEVM
                     GLMAVHLKKPEEASKSGKLMLATLAIIYIISIGLALLLVPLHTFTEQDSPFITSLKGY
                     NLEIILDIFNGIFIIAGFSTLVASLFAVTTLLCTMADDGDAPKCFTLKEGKKICWPAL
                     GLTFAGLVLSIILSLVLPKNIYEHMTTAAGLMLLYTWLFILFSSKKLTDPEGMGKTQI
                     YLAMVLIAAAVSGTLFEKSSRPGFFVSIGFLVIIAIVTMIYQKKQGHKDRPASP*"
                     /label="ycgH CDS"
     gene            complement(317659..318999)
                     /gene="ycgH"
                     /locus_tag="BSU_03110"
                     /old_locus_tag="BSU03110"
                     /label="ycgH gene"
     promotor_-10    complement(319026..319037)
                     /Source="Nicolas_upshift_promotors"
                     /id="U228"
                     /multdbtbs="-"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp=1
                     /psig=1
                     /xcortree=918
                     /SigmaFactorBS="ctgcttccttctccatgtaaaaagaggcaaaaatccgaTGTA
                     TATaagctttggacagaTCACAATCTAACcttagataaaaggggttgaataaataatg
                     a"
                     /listShort="ycgH, S109"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(319036)
                     /Source="Nicolas_upshifts"
                     /id="U228"
                     /multdbtbs="-"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp=1
                     /psig=1
                     /xcortree=918
                     /SigmaFactorBS="ctgcttccttctccatgtaaaaagaggcaaaaatccgaTGTA
                     TATaagctttggacagaTCACAATCTAACcttagataaaaggggttgaataaataatg
                     a"
                     /listShort="ycgH, S109"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(319052..319058)
                     /Source="Nicolas_upshift_promotors"
                     /id="U228"
                     /multdbtbs="-"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp=1
                     /psig=1
                     /xcortree=918
                     /SigmaFactorBS="ctgcttccttctccatgtaaaaagaggcaaaaatccgaTGTA
                     TATaagctttggacagaTCACAATCTAACcttagataaaaggggttgaataaataatg
                     a"
                     /listShort="ycgH, S109"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-35    319078..319084
                     /Source="Nicolas_upshift_promotors"
                     /id="U229"
                     /multdbtbs="-"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp=1
                     /psig=1
                     /xcortree=817
                     /SigmaFactorBS="ttgtgatctgtccaaagcttatatacatcggatttttgcctc
                     ttttTACATGGagaaggaagcagacGCTCATACTAATgaaaaaaggagcaaaccaatg
                     a"
                     /listShort="ycgI"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     upshifts        319092
                     /Source="Nicolas_upshifts"
                     /id="U229"
                     /multdbtbs="-"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp=1
                     /psig=1
                     /xcortree=817
                     /SigmaFactorBS="ttgtgatctgtccaaagcttatatacatcggatttttgcctc
                     ttttTACATGGagaaggaagcagacGCTCATACTAATgaaaaaaggagcaaaccaatg
                     a"
                     /listShort="ycgI"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-10    319099..319110
                     /Source="Nicolas_upshift_promotors"
                     /id="U229"
                     /multdbtbs="-"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp=1
                     /psig=1
                     /xcortree=817
                     /SigmaFactorBS="ttgtgatctgtccaaagcttatatacatcggatttttgcctc
                     ttttTACATGGagaaggaagcagacGCTCATACTAATgaaaaaaggagcaaaccaatg
                     a"
                     /listShort="ycgI"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     CDS             319129..319725
                     /gene="ycgI"
                     /locus_tag="BSU_03120"
                     /old_locus_tag="BSU03120"
                     /function="16.8: Protect"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 1b: Function from experimental evidences
                     in the studied species; PubMedId: 16433904, 28898812;
                     Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="xenotiotic metabolite methyltransferase"
                     /protein_id="NP_388194.3"
                     /db_xref="EnsemblGenomes-Gn:BSU03120"
                     /db_xref="EnsemblGenomes-Tr:CAB12106"
                     /db_xref="InterPro:IPR018959"
                     /db_xref="SubtiList:BG12007"
                     /db_xref="UniProtKB/Swiss-Prot:O31473"
                     /translation="MTQQYIVEPKKGLGLKLKKGQILKVVDVEGQQVADFVAYHAKDF
                     YEHLDQGATIDANHSIHVKVNDHLYSNLYKPMLTLIEDTVGKHDLLLPACRPDMNRLL
                     YGKQKDEFQDTCYDNMNRALEQFGVPKPHMHYPFAIFMNTVLDEKGNLSVETPLSNAG
                     DYVRLRAEMDLIVAFSSCPIEKGKCNGDSVTSIRVEVS*"
                     /label="ycgI CDS"
     gene            319129..319725
                     /gene="ycgI"
                     /locus_tag="BSU_03120"
                     /old_locus_tag="BSU03120"
                     /label="ycgI gene"
     promotor_-35    319733..319740
                     /Source="Nicolas_upshift_promotors"
                     /id="U230"
                     /multdbtbs="SigA"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.471528471528472"
                     /psig="0.99100899100899"
                     /xcortree=104
                     /SigmaFactorBS="gtgtgacatccatacgggttgaagtcagctgatctctctTGT
                     TCACAgtgaatgaagaccTGTGCTATATTTAATAGGGAtacataacagtcatgattca
                     t"
                     /listShort="S110, nadE"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     S_feature       319754..319854
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_338187_338287"
                     /HighExp="dia15, LBGtran, dia5, Etha, dia0, LBGexp, M0t45,
                     Lbexp, Diami, Heat"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.991"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S110"
     promotor_-10    319754..319773
                     /Source="Nicolas_upshift_promotors"
                     /id="U230"
                     /multdbtbs="SigA"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.471528471528472"
                     /psig="0.99100899100899"
                     /xcortree=104
                     /SigmaFactorBS="gtgtgacatccatacgggttgaagtcagctgatctctctTGT
                     TCACAgtgaatgaagaccTGTGCTATATTTAATAGGGAtacataacagtcatgattca
                     t"
                     /listShort="S110, nadE"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        319754
                     /Source="Nicolas_upshifts"
                     /id="U230"
                     /multdbtbs="SigA"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.471528471528472"
                     /psig="0.99100899100899"
                     /xcortree=104
                     /SigmaFactorBS="gtgtgacatccatacgggttgaagtcagctgatctctctTGT
                     TCACAgtgaatgaagaccTGTGCTATATTTAATAGGGAtacataacagtcatgattca
                     t"
                     /listShort="S110, nadE"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     downshifts      complement(319850)
                     /Source="Nicolas_upshifts"
                     /id="D136"
                     /incds=0
                     /nref=3
                     /ntot=24
                     /MaxReadThrough="1.2989"
                     /MaxDrop="4.67402"
                     /score="15.0992897"
                     /energy="-14.1"
                     /TU="NA"
                     /idTUdmin="U233"
                     /TUdmin=1562
                     /isTUend="FALSE"
                     /label="downshifts"
     CDS             319855..320673
                     /gene="nadE"
                     /locus_tag="BSU_03130"
                     /old_locus_tag="BSU03130"
                     /EC_number="6.3.1.5"
                     /function="16.2: Construct biomass (Anabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:7890752, 9271869, 12682299, 19204287"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 7890752, 9271869,
                     12682299, 19204287; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="ammonium-dependent NAD+ synthetase"
                     /protein_id="NP_388195.1"
                     /db_xref="EnsemblGenomes-Gn:BSU03130"
                     /db_xref="EnsemblGenomes-Tr:CAB12107"
                     /db_xref="GOA:P08164"
                     /db_xref="InterPro:IPR003694"
                     /db_xref="InterPro:IPR014729"
                     /db_xref="InterPro:IPR022310"
                     /db_xref="InterPro:IPR022926"
                     /db_xref="PDB:1EE1"
                     /db_xref="PDB:1FYD"
                     /db_xref="PDB:1IFX"
                     /db_xref="PDB:1IH8"
                     /db_xref="PDB:1KQP"
                     /db_xref="PDB:1NSY"
                     /db_xref="PDB:2NSY"
                     /db_xref="SubtiList:BG10694"
                     /db_xref="UniProtKB/Swiss-Prot:P08164"
                     /translation="MSMQEKIMRELHVKPSIDPKQEIEDRVNFLKQYVKKTGAKGFVL
                     GISGGQDSTLAGRLAQLAVESIREEGGDAQFIAVRLPHGTQQDEDDAQLALKFIKPDK
                     SWKFDIKSTVSAFSDQYQQETGDQLTDFNKGNVKARTRMIAQYAIGGQEGLLVLGTDH
                     AAEAVTGFFTKYGDGGADLLPLTGLTKRQGRTLLKELGAPERLYLKEPTADLLDEKPQ
                     QSDETELGISYDEIDDYLEGKEVSAKVSEALEKRYSMTEHKRQVPASMFDDWWK*"
                     /label="nadE CDS"
     gene            319855..320673
                     /gene="nadE"
                     /locus_tag="BSU_03130"
                     /old_locus_tag="BSU03130"
                     /label="nadE gene"
     downshifts      320655
                     /Source="Nicolas_upshifts"
                     /id="D137"
                     /incds=0
                     /nref=144
                     /ntot=271
                     /MaxReadThrough="2.68866"
                     /MaxDrop="6.24927"
                     /score="20.6612287"
                     /energy="-14.1"
                     /TU="U230"
                     /idTUdmin="U230"
                     /TUdmin="-65"
                     /isTUend="FALSE"
                     /label="downshifts"
     CDS             complement(320723..321316)
                     /gene="tmrB"
                     /locus_tag="BSU_03140"
                     /old_locus_tag="BSU03140"
                     /function="16.8: Protect"
                     /experiment="publication(s) with functional evidences,
                     PMID:1624425, 7766032, 15131133, 27315722"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 1624425, 7766032,
                     15131133, 27315722; Product type f: factor"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding tunicamycin resistance protein"
                     /protein_id="NP_388196.2"
                     /db_xref="EnsemblGenomes-Gn:BSU03140"
                     /db_xref="EnsemblGenomes-Tr:CAB12108"
                     /db_xref="GOA:P12921"
                     /db_xref="InterPro:IPR027417"
                     /db_xref="SubtiList:BG10456"
                     /db_xref="UniProtKB/Swiss-Prot:P12921"
                     /translation="MIIWINGAFGSGKTQTAFELHRRLNPSYVYDPEKMGFALRSMVP
                     QEIAKDDFQSYPLWRAFNYSLLASLTDTYRGILIVPMTIVHPEYFNEIIGRLRQEGRI
                     VHHFTLMASKETLLKRLRTRAEGKNSWAAKQIDRCVEGLSSPIFEDHIQTDNLSIQDV
                     AENIAARAELPLDPDTRGSLRRFADRLMVKLNHIRIK*"
                     /label="tmrB CDS"
     gene            complement(320723..321316)
                     /gene="tmrB"
                     /locus_tag="BSU_03140"
                     /old_locus_tag="BSU03140"
                     /label="tmrB gene"
     downshifts      complement(320730)
                     /Source="Nicolas_upshifts"
                     /id="D138"
                     /incds=0
                     /nref=10
                     /ntot=143
                     /MaxReadThrough="0.60282"
                     /MaxDrop="3.74815"
                     /score="15.0992897"
                     /energy="-14.1"
                     /TU="NA"
                     /idTUdmin="U233"
                     /TUdmin=682
                     /isTUend="FALSE"
                     /label="downshifts"
     promotor_-10    complement(321331..321350)
                     /Source="Nicolas_upshift_promotors"
                     /id="U231"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.779220779220779"
                     /psig="0.999000999001"
                     /xcortree=3131
                     /SigmaFactorBS="gttaaaaccttccgcctttattgtttttccagctgactCTTC
                     gatggaagggtcttTTTCTGTATGATAAATAGGAagggagaaatggcgatgatcattt
                     g"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(321346)
                     /Source="Nicolas_upshifts"
                     /id="U231"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.779220779220779"
                     /psig="0.999000999001"
                     /xcortree=3131
                     /SigmaFactorBS="gttaaaaccttccgcctttattgtttttccagctgactCTTC
                     gatggaagggtcttTTTCTGTATGATAAATAGGAagggagaaatggcgatgatcattt
                     g"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(321365..321368)
                     /Source="Nicolas_upshift_promotors"
                     /id="U231"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.779220779220779"
                     /psig="0.999000999001"
                     /xcortree=3131
                     /SigmaFactorBS="gttaaaaccttccgcctttattgtttttccagctgactCTTC
                     gatggaagggtcttTTTCTGTATGATAAATAGGAagggagaaatggcgatgatcattt
                     g"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     S_feature       complement(321374..321522)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_339807_339955_c"
                     /HighExp="S4, S3, S6, S5, S7, BT, S8, LoTm, T5.0H, B36"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigEF"
                     /TUshortPSig="0.987"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S111"
     promotor_-35    321424..321431
                     /Source="Nicolas_upshift_promotors"
                     /id="U232"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.495504495504495"
                     /psig="0.997002997002997"
                     /xcortree=3017
                     /SigmaFactorBS="aaaggcggaaggttttaacgcttttttgcgtcgaagTATTAA
                     AAtacctgcagaaaTGTTGTACAATGAATGTCATtcaggcaaaaatggctacaacaaa
                     g"
                     /listShort="S112, aroK"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    321444..321463
                     /Source="Nicolas_upshift_promotors"
                     /id="U232"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.495504495504495"
                     /psig="0.997002997002997"
                     /xcortree=3017
                     /SigmaFactorBS="aaaggcggaaggttttaacgcttttttgcgtcgaagTATTAA
                     AAtacctgcagaaaTGTTGTACAATGAATGTCATtcaggcaaaaatggctacaacaaa
                     g"
                     /listShort="S112, aroK"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     S_feature       321446..321554
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_339879_339987"
                     /HighExp="Diami, BMM, GM 15, GM 25, GM 120, GM 60, GM 10,
                     G180, GM 45, M9-exp"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.997"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S112"
     upshifts        321448
                     /Source="Nicolas_upshifts"
                     /id="U232"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.495504495504495"
                     /psig="0.997002997002997"
                     /xcortree=3017
                     /SigmaFactorBS="aaaggcggaaggttttaacgcttttttgcgtcgaagTATTAA
                     AAtacctgcagaaaTGTTGTACAATGAATGTCATtcaggcaaaaatggctacaacaaa
                     g"
                     /listShort="S112, aroK"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-10    complement(321516..321534)
                     /Source="Nicolas_upshift_promotors"
                     /id="U233"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.987012987012987"
                     /psig="0.987012987012987"
                     /xcortree=1121
                     /SigmaFactorBS="tcttcggcgaaatcctcctaaggaatgaaattatataTTCAT
                     TatatgcttatttagcGAATATTTATATAGATACCggctttaccggtcaagcttatag
                     t"
                     /listShort="S111"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     promotor_-35    321522..321529
                     /Source="Nicolas_upshift_promotors"
                     /id="U234"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.943056943056943"
                     /psig="0.988011988011988"
                     /xcortree=1750
                     /SigmaFactorBS="taagcttgaccggtaaagccggtatcTATATAAAtattcgct
                     aaataaGCATATAATGAATATATAATttcattccttaggaggatttcgccgaagatga
                     a"
                     /listShort="aroK"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     upshifts        complement(321532)
                     /Source="Nicolas_upshifts"
                     /id="U233"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.987012987012987"
                     /psig="0.987012987012987"
                     /xcortree=1121
                     /SigmaFactorBS="tcttcggcgaaatcctcctaaggaatgaaattatataTTCAT
                     TatatgcttatttagcGAATATTTATATAGATACCggctttaccggtcaagcttatag
                     t"
                     /listShort="S111"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-10    321544..321563
                     /Source="Nicolas_upshift_promotors"
                     /id="U234"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.943056943056943"
                     /psig="0.988011988011988"
                     /xcortree=1750
                     /SigmaFactorBS="taagcttgaccggtaaagccggtatcTATATAAAtattcgct
                     aaataaGCATATAATGAATATATAATttcattccttaggaggatttcgccgaagatga
                     a"
                     /listShort="aroK"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     promotor_-35    complement(321550..321555)
                     /Source="Nicolas_upshift_promotors"
                     /id="U233"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.987012987012987"
                     /psig="0.987012987012987"
                     /xcortree=1121
                     /SigmaFactorBS="tcttcggcgaaatcctcctaaggaatgaaattatataTTCAT
                     TatatgcttatttagcGAATATTTATATAGATACCggctttaccggtcaagcttatag
                     t"
                     /listShort="S111"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     upshifts        321556
                     /Source="Nicolas_upshifts"
                     /id="U234"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.943056943056943"
                     /psig="0.988011988011988"
                     /xcortree=1750
                     /SigmaFactorBS="taagcttgaccggtaaagccggtatcTATATAAAtattcgct
                     aaataaGCATATAATGAATATATAATttcattccttaggaggatttcgccgaagatga
                     a"
                     /listShort="aroK"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             321592..322152
                     /gene="aroK"
                     /locus_tag="BSU_03150"
                     /old_locus_tag="BSU03150"
                     /EC_number="2.7.1.71"
                     /function="16.2: Construct biomass (Anabolism)"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 2a: Function from experimental evidences
                     in other organisms; PubMedId: 170268, 7612934, 27339308;
                     Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="shikimate kinase"
                     /protein_id="NP_388197.2"
                     /db_xref="EnsemblGenomes-Gn:BSU03150"
                     /db_xref="EnsemblGenomes-Tr:CAB12109"
                     /db_xref="GOA:P37944"
                     /db_xref="InterPro:IPR000623"
                     /db_xref="InterPro:IPR023000"
                     /db_xref="InterPro:IPR027417"
                     /db_xref="InterPro:IPR031322"
                     /db_xref="SubtiList:BG10457"
                     /db_xref="UniProtKB/Swiss-Prot:P37944"
                     /translation="MNAKRAIPVRERNIVLIGFMGVGKTTIGQLVAKKLYRDFIDIDQ
                     QIEKDFNMSIPEIFEKKGEDFFRKTEKEYILDICHHKRFKIVSLGGGSFKQEEIRNCC
                     LENCLVLHLDLSWENWKQRADLLIESRPVLHNRSMDEMEQLFNERKVIYDKHNSKVAT
                     DNLSPEEVADYIVETLKIGWDLYQPM*"
                     /label="aroK CDS"
     gene            321592..322152
                     /gene="aroK"
                     /locus_tag="BSU_03150"
                     /old_locus_tag="BSU03150"
                     /label="aroK gene"
     downshifts      322129
                     /Source="Nicolas_upshifts"
                     /id="D139"
                     /incds=0
                     /nref=21
                     /ntot=239
                     /MaxReadThrough="2.07607"
                     /MaxDrop="4.67156"
                     /score="44.9099474"
                     /energy="-13.1"
                     /TU="NA"
                     /idTUdmin="U232"
                     /TUdmin=1
                     /isTUend="TRUE"
                     /label="downshifts"
     CDS             complement(322180..322941)
                     /gene="ycgJ"
                     /locus_tag="BSU_03160"
                     /old_locus_tag="BSU03160"
                     /EC_number="2.1.1.-"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 1b: Function from experimental evidences
                     in the studied species; PubMedId: 28898812; Product type
                     e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="xenotiotic metabolite methyltransferase"
                     /protein_id="NP_388198.2"
                     /db_xref="EnsemblGenomes-Gn:BSU03160"
                     /db_xref="EnsemblGenomes-Tr:CAB12110"
                     /db_xref="GOA:O31474"
                     /db_xref="InterPro:IPR013216"
                     /db_xref="InterPro:IPR029063"
                     /db_xref="PDB:1XXL"
                     /db_xref="PDB:2GLU"
                     /db_xref="SubtiList:BG12008"
                     /db_xref="UniProtKB/Swiss-Prot:O31474"
                     /translation="MTNETPFSKNAEMYRDEKVFAEGEDLGLMIKTAECRAEHRVLDI
                     GAGAGHTALAFSPYVQECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPDD
                     SFDIITCRYAAHHFSDVRKAVREVARVLKQDGRFLLVDHYAPEDPVLDEFVNHLNRLR
                     DPSHVRESSLSEWQAMFSANQLAYQDIQKWNLPIQYDSWIKRGGTPADREKQIITHLN
                     HASDEARDTFCITLNQNGQPISFCLKAILIQGIKR*"
                     /label="ycgJ CDS"
     gene            complement(322180..322941)
                     /gene="ycgJ"
                     /locus_tag="BSU_03160"
                     /old_locus_tag="BSU03160"
                     /label="ycgJ gene"
     downshifts      complement(322204)
                     /Source="Nicolas_upshifts"
                     /id="D140"
                     /incds=0
                     /nref=3
                     /ntot=55
                     /MaxReadThrough="0.31391"
                     /MaxDrop="3.85249"
                     /score="18.9843263"
                     /energy="-13.1"
                     /TU="NA"
                     /idTUdmin="U235"
                     /TUdmin=0
                     /isTUend="TRUE"
                     /label="downshifts"
     promotor_-10    complement(322973..322992)
                     /Source="Nicolas_upshift_promotors"
                     /id="U235"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.392607392607393"
                     /psig="0.942057942057942"
                     /xcortree=1808
                     /SigmaFactorBS="acctatcattttcatcatttttatatcTTGGACgaatcataa
                     cagaaATTGCTAACATAATCCATATcatcatttacgaaaagaaggagctggttcaaat
                     g"
                     /listShort="ycgJ"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     promotor_-35    322974..322981
                     /Source="Nicolas_upshift_promotors"
                     /id="U236"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.662337662337662"
                     /psig="0.983016983016983"
                     /xcortree=1867
                     /SigmaFactorBS="cagctccttcttttcgtaaatgatgaTATGGATTatgttagc
                     aatttcTGTTATGATTCGTCCAAGATataaaaatgatgaaaatgataggttcaaccta
                     t"
                     /listShort="ycgK, S113, cah, S114, ycgL"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     upshifts        complement(322979)
                     /Source="Nicolas_upshifts"
                     /id="U235"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.392607392607393"
                     /psig="0.942057942057942"
                     /xcortree=1808
                     /SigmaFactorBS="acctatcattttcatcatttttatatcTTGGACgaatcataa
                     cagaaATTGCTAACATAATCCATATcatcatttacgaaaagaaggagctggttcaaat
                     g"
                     /listShort="ycgJ"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-10    322996..323015
                     /Source="Nicolas_upshift_promotors"
                     /id="U236"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.662337662337662"
                     /psig="0.983016983016983"
                     /xcortree=1867
                     /SigmaFactorBS="cagctccttcttttcgtaaatgatgaTATGGATTatgttagc
                     aatttcTGTTATGATTCGTCCAAGATataaaaatgatgaaaatgataggttcaaccta
                     t"
                     /listShort="ycgK, S113, cah, S114, ycgL"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     promotor_-35    complement(323007..323012)
                     /Source="Nicolas_upshift_promotors"
                     /id="U235"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.392607392607393"
                     /psig="0.942057942057942"
                     /xcortree=1808
                     /SigmaFactorBS="acctatcattttcatcatttttatatcTTGGACgaatcataa
                     cagaaATTGCTAACATAATCCATATcatcatttacgaaaagaaggagctggttcaaat
                     g"
                     /listShort="ycgJ"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     upshifts        323008
                     /Source="Nicolas_upshifts"
                     /id="U236"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.662337662337662"
                     /psig="0.983016983016983"
                     /xcortree=1867
                     /SigmaFactorBS="cagctccttcttttcgtaaatgatgaTATGGATTatgttagc
                     aatttcTGTTATGATTCGTCCAAGATataaaaatgatgaaaatgataggttcaaccta
                     t"
                     /listShort="ycgK, S113, cah, S114, ycgL"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             323059..324033
                     /gene="ycgK"
                     /locus_tag="BSU_03170"
                     /old_locus_tag="BSU03170"
                     /function="16.3: Control"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 10939241; Product type
                     r: regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="putative transcriptional regulator (LysR
                     family)"
                     /protein_id="NP_388199.2"
                     /db_xref="EnsemblGenomes-Gn:BSU03170"
                     /db_xref="EnsemblGenomes-Tr:CAB12111"
                     /db_xref="GOA:P94387"
                     /db_xref="InterPro:IPR000847"
                     /db_xref="InterPro:IPR005119"
                     /db_xref="InterPro:IPR036388"
                     /db_xref="InterPro:IPR036390"
                     /db_xref="SubtiList:BG12009"
                     /db_xref="UniProtKB/Swiss-Prot:P94387"
                     /translation="MDIKVMEYAAEIARRQSFTKAAEHLHIAQPSLSQQIKKLEAELG
                     LTLFHRSHGSVTLTPHGRRFIEKAEDIIRSRDDLLREMQERSQGIGHKLSIGIPAVTG
                     RYLFPPLLKQFLARYPHVEVQLVEKDPVSLEKMTAKGEVDLSVLSLPIEDERLSITPL
                     LTEPVVLAVPKEKQRWMPPELVALIEKALEEDEGRQPCVPIDMVRNVPFILLKEGFGF
                     RRTVLDLCAESGFKPNAAFKTSHIETAQSLVANGLGVTMAPNMVRRDKDPGVIYLSIQ
                     SAPSRTLVFVFLKNRYVSLTAQAFMELSRESLKQTFDEGCLGNKDENI*"
                     /label="ycgK CDS"
     gene            323059..324033
                     /gene="ycgK"
                     /locus_tag="BSU_03170"
                     /old_locus_tag="BSU03170"
                     /label="ycgK gene"
     S_feature       324034..324104
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_342467_342537"
                     /HighExp="Diami, dia5, dia15, S1, dia0, C90, LBGexp, Heat,
                     Lbexp, GM 120"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.983"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S113"
     CDS             324105..325061
                     /gene="cah"
                     /locus_tag="BSU_03180"
                     /old_locus_tag="BSU03180"
                     /EC_number="3.1.1.41"
                     /EC_number="3.1.1.72"
                     /function="16.11: Scavenge (Catabolism)"
                     /function="16.8: Protect"
                     /experiment="publication(s) with functional evidences,
                     PMID:12842474, 19837798, 21382014"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 12842474, 19837798,
                     21382014; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="promiscuous acetyl xylan esterase-cephalosporin
                     C deacetylase"
                     /protein_id="NP_388200.1"
                     /db_xref="EnsemblGenomes-Gn:BSU03180"
                     /db_xref="EnsemblGenomes-Tr:CAB12112"
                     /db_xref="GOA:P94388"
                     /db_xref="InterPro:IPR008391"
                     /db_xref="InterPro:IPR029058"
                     /db_xref="PDB:1L7A"
                     /db_xref="PDB:1ODS"
                     /db_xref="PDB:1ODT"
                     /db_xref="SubtiList:BG11919"
                     /db_xref="UniProtKB/Swiss-Prot:P94388"
                     /translation="MQLFDLPLDQLQTYKPEKTAPKDFSEFWKLSLEELAKVQAEPDL
                     QPVDYPADGVKVYRLTYKSFGNARITGWYAVPDKEGPHPAIVKYHGYNASYDGEIHEM
                     VNWALHGYATFGMLVRGQQSSEDTSISPHGHALGWMTKGILDKDTYYYRGVYLDAVRA
                     LEVISSFDEVDETRIGVTGGSQGGGLTIAAAALSDIPKAAVADYPYLSNFERAIDVAL
                     EQPYLEINSFFRRNGSPETEVQAMKTLSYFDIMNLADRVKVPVLMSIGLIDKVTPPST
                     VFAAYNHLETKKELKVYRYFGHEYIPAFQTEKLAFFKQHLKG*"
                     /label="cah CDS"
     gene            324105..325061
                     /gene="cah"
                     /locus_tag="BSU_03180"
                     /old_locus_tag="BSU03180"
                     /label="cah gene"
     promotor_-35    324520..324526
                     /Source="Nicolas_upshift_promotors"
                     /id="U237"
                     /multdbtbs="-"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp="0.998001998001998"
                     /psig="0.998001998001998"
                     /xcortree=806
                     /SigmaFactorBS="ttcaccgcacggtcacgctttgggctggatgaCGAAAGGaat
                     tcttgataaagATACATACTATTaccgcggtgtttatttggacgccgtccgcgcgctt
                     g"
                     /listShort="S114, ycgL"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    324541..324552
                     /Source="Nicolas_upshift_promotors"
                     /id="U237"
                     /multdbtbs="-"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp="0.998001998001998"
                     /psig="0.998001998001998"
                     /xcortree=806
                     /SigmaFactorBS="ttcaccgcacggtcacgctttgggctggatgaCGAAAGGaat
                     tcttgataaagATACATACTATTaccgcggtgtttatttggacgccgtccgcgcgctt
                     g"
                     /listShort="S114, ycgL"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        324548
                     /Source="Nicolas_upshifts"
                     /id="U237"
                     /multdbtbs="-"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp="0.998001998001998"
                     /psig="0.998001998001998"
                     /xcortree=806
                     /SigmaFactorBS="ttcaccgcacggtcacgctttgggctggatgaCGAAAGGaat
                     tcttgataaagATACATACTATTaccgcggtgtttatttggacgccgtccgcgcgctt
                     g"
                     /listShort="S114, ycgL"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     S_feature       325062..325140
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_343495_343573"
                     /HighExp="dia5, dia15, Diami, dia0, B36, S1, MG 10, BT,
                     B60, MG t5"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigGF, SigA"
                     /TUshortPSig="0.998, 0.983"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S114"
     promotor_-35    325115..325120
                     /Source="Nicolas_upshift_promotors"
                     /id="U238"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.993006993006993"
                     /psig="0.993006993006993"
                     /xcortree=1193
                     /SigmaFactorBS="atatcatcaggcggtttttttctgcaaactgccGGAATGaga
                     acagactggagacGAATAGATATGAAACAAAGaatcattgatgaattaaaacggatcg
                     a"
                     /listShort="ycgL, S115, ycgM, ycgN, S116, ycgO"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    325137..325155
                     /Source="Nicolas_upshift_promotors"
                     /id="U238"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.993006993006993"
                     /psig="0.993006993006993"
                     /xcortree=1193
                     /SigmaFactorBS="atatcatcaggcggtttttttctgcaaactgccGGAATGaga
                     acagactggagacGAATAGATATGAAACAAAGaatcattgatgaattaaaacggatcg
                     a"
                     /listShort="ycgL, S115, ycgM, ycgN, S116, ycgO"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        325142
                     /Source="Nicolas_upshifts"
                     /id="U238"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.993006993006993"
                     /psig="0.993006993006993"
                     /xcortree=1193
                     /SigmaFactorBS="atatcatcaggcggtttttttctgcaaactgccGGAATGaga
                     acagactggagacGAATAGATATGAAACAAAGaatcattgatgaattaaaacggatcg
                     a"
                     /listShort="ycgL, S115, ycgM, ycgN, S116, ycgO"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             325145..325927
                     /gene="ycgL"
                     /locus_tag="BSU_03190"
                     /old_locus_tag="BSU03190"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved protein of unknown function"
                     /protein_id="NP_388201.1"
                     /db_xref="EnsemblGenomes-Gn:BSU03190"
                     /db_xref="EnsemblGenomes-Tr:CAB12113"
                     /db_xref="InterPro:IPR018775"
                     /db_xref="SubtiList:BG12010"
                     /db_xref="UniProtKB/Swiss-Prot:P94389"
                     /translation="MKQRIIDELKRIEQSYGVKIVYAVESGSRAWGFPSQDSDYDVRF
                     IYVPKKEWYFSIEQERDVIEEPIHDLLDISGWELRKTLRLFKKSNPPLLEWLSSDIVY
                     YEAFTTAEQLRKLRTEAFKPEASVYHYINMARRNVKDYLQGQEVKIKKYFYVLRPILA
                     CQWIEKHGTIPPMDFTVLMNELVAEPELKAEMETLLERKRRGEELDLEARIDVIHQFI
                     ETEIERIMEAAKELKAEKKDMTSELNRLLLNTVEEVWKDGGS*"
                     /label="ycgL CDS"
     gene            325145..325927
                     /gene="ycgL"
                     /locus_tag="BSU_03190"
                     /old_locus_tag="BSU03190"
                     /label="ycgL gene"
     downshifts      325892
                     /Source="Nicolas_upshifts"
                     /id="D141"
                     /incds=0
                     /nref=11
                     /ntot=63
                     /MaxReadThrough="3.94077"
                     /MaxDrop="4.37398"
                     /score="0.421649027"
                     /energy="-5.9"
                     /TU="U238"
                     /idTUdmin="U236"
                     /TUdmin=2
                     /isTUend="TRUE"
                     /label="downshifts"
     S_feature       325937..326064
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_344370_344497"
                     /HighExp="S5, S6, S8, S4, S7, B36, B60, BT, S3, S1"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigEF"
                     /TUshortPSig="0.993"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S115"
     promotor_-35    326041..326045
                     /Source="Nicolas_upshift_promotors"
                     /id="U239"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.472527472527473"
                     /psig="0.922077922077922"
                     /xcortree=391
                     /SigmaFactorBS="cacaaaaataatcagaatctttgtattttgagaatATTGTga
                     acgctggttttgTCCATTTACAATAAACTCATacaaatacttcttagattgcggggtg
                     t"
                     /listShort="ycgM, ycgN, S116, ycgO, S118, ycgP"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    326060..326079
                     /Source="Nicolas_upshift_promotors"
                     /id="U239"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.472527472527473"
                     /psig="0.922077922077922"
                     /xcortree=391
                     /SigmaFactorBS="cacaaaaataatcagaatctttgtattttgagaatATTGTga
                     acgctggttttgTCCATTTACAATAAACTCATacaaatacttcttagattgcggggtg
                     t"
                     /listShort="ycgM, ycgN, S116, ycgO, S118, ycgP"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        326066
                     /Source="Nicolas_upshifts"
                     /id="U239"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.472527472527473"
                     /psig="0.922077922077922"
                     /xcortree=391
                     /SigmaFactorBS="cacaaaaataatcagaatctttgtattttgagaatATTGTga
                     acgctggttttgTCCATTTACAATAAACTCATacaaatacttcttagattgcggggtg
                     t"
                     /listShort="ycgM, ycgN, S116, ycgO, S118, ycgP"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             326118..327029
                     /gene="putB"
                     /locus_tag="BSU_03200"
                     /old_locus_tag="BSU03200"
                     /EC_number="1.5.5.2"
                     /function="16.11: Scavenge (Catabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:17536821, 2118500, 21840319, 22139509, 26735940"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 17536821, 2118500,
                     21840319, 22139509, 26735940; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="proline oxidase"
                     /protein_id="NP_388202.1"
                     /db_xref="EnsemblGenomes-Gn:BSU03200"
                     /db_xref="EnsemblGenomes-Tr:CAB12114"
                     /db_xref="GOA:P94390"
                     /db_xref="InterPro:IPR002872"
                     /db_xref="InterPro:IPR008219"
                     /db_xref="InterPro:IPR015659"
                     /db_xref="InterPro:IPR029041"
                     /db_xref="SubtiList:BG12011"
                     /db_xref="UniProtKB/Swiss-Prot:P94390"
                     /translation="MITRDFFLFLSKSGFLNKMARNWGSRVAAGKIIGGNDFNSSIPT
                     IRQLNSQGLSVTVDHLGEFVNSAEVARERTEECIQTIATIADQELNSHVSLKMTSLGL
                     DIDMDLVYENMTKILQTAEKHKIMVTIDMEDEVRCQKTLDIFKDFRKKYEHVSTVLQA
                     YLYRTEKDIDDLDSLNPFLRLVKGAYKESEKVAFPEKSDVDENYKKIIRKQLLNGHYT
                     AIATHDDKMIDFTKQLAKEHGIANDKFEFQMLYGMRSQTQLSLVKEGYNMRVYLPYGE
                     DWYGYFMRRLAERPSNIAFAFKGMTKK*"
                     /label="putB CDS"
     gene            326118..327029
                     /gene="putB"
                     /locus_tag="BSU_03200"
                     /old_locus_tag="BSU03200"
                     /label="putB gene"
     CDS             327046..328593
                     /gene="putC"
                     /locus_tag="BSU_03210"
                     /old_locus_tag="BSU03210"
                     /EC_number="1.2.1.88"
                     /function="16.11: Scavenge (Catabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:11418582, 17183215, 21840319, 22139509, 25355936"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 11418582, 17183215,
                     21840319, 22139509, 25355936; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="1-pyrroline-5-carboxylate dehydrogenase"
                     /protein_id="NP_388203.2"
                     /db_xref="EnsemblGenomes-Gn:BSU03210"
                     /db_xref="EnsemblGenomes-Tr:CAB12115"
                     /db_xref="GOA:P94391"
                     /db_xref="InterPro:IPR005932"
                     /db_xref="InterPro:IPR015590"
                     /db_xref="InterPro:IPR016160"
                     /db_xref="InterPro:IPR016161"
                     /db_xref="InterPro:IPR016162"
                     /db_xref="InterPro:IPR029510"
                     /db_xref="SubtiList:BG12012"
                     /db_xref="UniProtKB/Swiss-Prot:P94391"
                     /translation="MTTPYKHEPFTNFQDQNNVEAFKKALATVSEYLGKDYPLVINGE
                     RVETEAKIVSINPADKEEVVGRVSKASQEHAEQAIQAAAKAFEEWRYTSPEERAAVLF
                     RAAAKVRRRKHEFSALLVKEAGKPWNEADADTAEAIDFMEYYARQMIELAKGKPVNSR
                     EGEKNQYVYTPTGVTVVIPPWNFLFAIMAGTTVAPIVTGNTVVLKPASATPVIAAKFV
                     EVLEESGLPKGVVNFVPGSGAEVGDYLVDHPKTSLITFTGSREVGTRIFERAAKVQPG
                     QQHLKRVIAEMGGKDTVVVDEDADIELAAQSIFTSAFGFAGQKCSAGSRAVVHEKVYD
                     QVLERVIEITESKVTAKPDSADVYMGPVIDQGSYDKIMSYIEIGKQEGRLVSGGTGDD
                     SKGYFIKPTIFADLDPKARLMQEEIFGPVVAFCKVSDFDEALEVANNTEYGLTGAVIT
                     NNRKHIERAKQEFHVGNLYFNRNCTGAIVGYHPFGGFKMSGTDSKAGGPDYLALHMQA
                     KTISEMF*"
                     /label="putC CDS"
     gene            327046..328593
                     /gene="putC"
                     /locus_tag="BSU_03210"
                     /old_locus_tag="BSU03210"
                     /label="putC gene"
     promotor_-35    328017..328023
                     /Source="Nicolas_upshift_promotors"
                     /id="U240"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.411588411588412"
                     /psig="0.994005994005994"
                     /xcortree=2488
                     /SigmaFactorBS="ggctttgcgggacaaaaatgctctgcaggttcACGTGCAgta
                     gttcatgaaaAAGTGTATGATCAAGTATTAgagcgtgtcattgaaattacggaatcaa
                     a"
                     /listShort="S116, ycgO, S118, ycgP"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    328037..328056
                     /Source="Nicolas_upshift_promotors"
                     /id="U240"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.411588411588412"
                     /psig="0.994005994005994"
                     /xcortree=2488
                     /SigmaFactorBS="ggctttgcgggacaaaaatgctctgcaggttcACGTGCAgta
                     gttcatgaaaAAGTGTATGATCAAGTATTAgagcgtgtcattgaaattacggaatcaa
                     a"
                     /listShort="S116, ycgO, S118, ycgP"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        328045
                     /Source="Nicolas_upshifts"
                     /id="U240"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.411588411588412"
                     /psig="0.994005994005994"
                     /xcortree=2488
                     /SigmaFactorBS="ggctttgcgggacaaaaatgctctgcaggttcACGTGCAgta
                     gttcatgaaaAAGTGTATGATCAAGTATTAgagcgtgtcattgaaattacggaatcaa
                     a"
                     /listShort="S116, ycgO, S118, ycgP"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    328128..328134
                     /Source="Nicolas_upshift_promotors"
                     /id="U241"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.793206793206793"
                     /psig=1
                     /xcortree=2403
                     /SigmaFactorBS="aaacctgacagtgcagatgtttatatgggaccTGTCATTgac
                     caaggttctTATGATAAAATTATGAGCTAtattgagatcggaaaacaggaagggcgtt
                     t"
                     /listShort="S116, ycgO"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    328147..328166
                     /Source="Nicolas_upshift_promotors"
                     /id="U241"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.793206793206793"
                     /psig=1
                     /xcortree=2403
                     /SigmaFactorBS="aaacctgacagtgcagatgtttatatgggaccTGTCATTgac
                     caaggttctTATGATAAAATTATGAGCTAtattgagatcggaaaacaggaagggcgtt
                     t"
                     /listShort="S116, ycgO"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        328156
                     /Source="Nicolas_upshifts"
                     /id="U241"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.793206793206793"
                     /psig=1
                     /xcortree=2403
                     /SigmaFactorBS="aaacctgacagtgcagatgtttatatgggaccTGTCATTgac
                     caaggttctTATGATAAAATTATGAGCTAtattgagatcggaaaacaggaagggcgtt
                     t"
                     /listShort="S116, ycgO"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     misc_feature    328592..328596
                     /Source="Nicolas_upshift_promotors"
                     /id="U242"
                     /multdbtbs="-"
                     /comp="M13"
                     /sig="Sig-"
                     /pcomp="0.315684315684316"
                     /psig="0.248751248751249"
                     /xcortree=3009
                     /SigmaFactorBS="cgggccggattacttggctctgcatatgcaagcaaaaacaat
                     cagtgaaatgttctAAGCGggactaaatgggcatcctccctgcgggggtgtccatttc
                     a"
                     /listShort="S116, ycgO, S118, ycgP"
                     /GFF_Attribute="listLong"
                     /label="promotor_single_box"
                     /note="Geneious type: promotor_single_box"
     S_feature       328594..328716
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_347027_347149"
                     /HighExp="S1, T2.0H, T2.30H, Lbstat, aero, HiOs, BC, Sw,
                     LPh, T3.0H"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="0.52312199999999998"
                     /TUshortSig="Sig-, SigA, SigA, SigA, SigEF"
                     /TUshortPSig="0.249, 1, 0.994, 0.922, 0.993"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S116"
     upshifts        328596
                     /Source="Nicolas_upshifts"
                     /id="U242"
                     /multdbtbs="-"
                     /comp="M13"
                     /sig="Sig-"
                     /pcomp="0.315684315684316"
                     /psig="0.248751248751249"
                     /xcortree=3009
                     /SigmaFactorBS="cgggccggattacttggctctgcatatgcaagcaaaaacaat
                     cagtgaaatgttctAAGCGggactaaatgggcatcctccctgcgggggtgtccatttc
                     a"
                     /listShort="S116, ycgO, S118, ycgP"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             328717..330138
                     /gene="putP"
                     /locus_tag="BSU_03220"
                     /old_locus_tag="BSU03220"
                     /function="16.1: Circulate"
                     /experiment="publication(s) with functional evidences,
                     PMID:11902719, 14976255, 15849754, 16850406, 21840319,
                     22139509, 24142252"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 11902719, 14976255,
                     15849754, 16850406, 21840319, 22139509, 24142252; Product
                     type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="proline permease"
                     /protein_id="NP_388204.2"
                     /db_xref="EnsemblGenomes-Gn:BSU03220"
                     /db_xref="EnsemblGenomes-Tr:CAB12116"
                     /db_xref="GOA:P94392"
                     /db_xref="InterPro:IPR001734"
                     /db_xref="InterPro:IPR011851"
                     /db_xref="InterPro:IPR018212"
                     /db_xref="SubtiList:BG12013"
                     /db_xref="UniProtKB/Swiss-Prot:P94392"
                     /translation="MLLIGYFAYKRTSNLTDYMLGGRSLGPAVTALSAGAADMSGWLL
                     MGLPGAMFSTGLSGAWIVIGLCLGAWANWLYVAPRLRTYTEKAGNSITIPGFLENRFG
                     DQTKLLRLFSGIVILVFFTFYVSSGMVSGGVLFNSILGMDYHTGLWIVTGVVVAYTLF
                     GGFLAVSWTDFVQGIIMFAALILVPIVTFFHTGGAGDTVAEIRSVDPDMFNIFKGTSV
                     LGIISLFAWGLGYFGQPHIIVRFMAITSVKEIKRARRIGMGWMILSAVGAVLTGLGGI
                     AYYHQRGMTLKDPETIFIQLGNILFHPIITGFLISAILAAIMSTISSQLLVTSSSLVE
                     DLYKSMFRRSASDKELVFLGRLAVLAVSIVALVLAWEKNNTILGLVSYAWAGFGASFG
                     PVVLLSLFWKRMTKWGALAGMIVGAATVIIWANAGLSDFLYEMIPGFAASLLSVFFVS
                     ILTQAPSQAVTDQFNDYQDTMSQ*"
                     /label="putP CDS"
     gene            328717..330138
                     /gene="putP"
                     /locus_tag="BSU_03220"
                     /old_locus_tag="BSU03220"
                     /label="putP gene"
     S_feature       complement(329237..331092)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_347670_349525_c"
                     /HighExp="T1.0H, T1.30H, T0.30H, T2.0H, T2.30H, T3.0H,
                     T3.30H, C30, T4.0H, Lbstat"
                     /AntisenseName="ycgP"
                     /AntisenseCor="0.143781082577395"
                     /AntisenseRegPval="-1.7"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigD"
                     /TUshortPSig="0.679"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S117"
     downshifts      330118
                     /Source="Nicolas_upshifts"
                     /id="D142"
                     /incds=0
                     /nref=21
                     /ntot=160
                     /MaxReadThrough="5.09597"
                     /MaxDrop="4.17771"
                     /score="5.89792272"
                     /energy="-15.9"
                     /TU="U239,U240,U242"
                     /idTUdmin="U238"
                     /TUdmin=4
                     /isTUend="TRUE"
                     /label="downshifts"
     S_feature       330163..330259
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_348596_348692"
                     /HighExp="S1, LPh, T2.0H, HPh, aero, Lbstat, LoTm, T2.30H,
                     Cold, HiOs"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="Sig-, SigA, SigA"
                     /TUshortPSig="0.249, 0.994, 0.922"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S118"
     promotor_-35    330230..330237
                     /Source="Nicolas_upshift_promotors"
                     /id="U243"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.985014985014985"
                     /psig=1
                     /xcortree=2392
                     /SigmaFactorBS="tttttcttttggaaacaaacgtattttttTCTATACAaaaag
                     accccgtatGGATATGATTAAAGTAAAAAaagtataggagaaaaaggtatggaagagc
                     t"
                     /listShort="ycgP"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    330252..330271
                     /Source="Nicolas_upshift_promotors"
                     /id="U243"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.985014985014985"
                     /psig=1
                     /xcortree=2392
                     /SigmaFactorBS="tttttcttttggaaacaaacgtattttttTCTATACAaaaag
                     accccgtatGGATATGATTAAAGTAAAAAaagtataggagaaaaaggtatggaagagc
                     t"
                     /listShort="ycgP"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        330261
                     /Source="Nicolas_upshifts"
                     /id="U243"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.985014985014985"
                     /psig=1
                     /xcortree=2392
                     /SigmaFactorBS="tttttcttttggaaacaaacgtattttttTCTATACAaaaag
                     accccgtatGGATATGATTAAAGTAAAAAaagtataggagaaaaaggtatggaagagc
                     t"
                     /listShort="ycgP"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             330291..331526
                     /gene="putR"
                     /locus_tag="BSU_03230"
                     /old_locus_tag="BSU03230"
                     /function="16.3: Control"
                     /experiment="publication(s) with functional evidences,
                     PMID:21840319, 21964733, 22139509"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 21840319, 21964733,
                     22139509; Product type r: regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional activator of proline
                     degradationoperon"
                     /protein_id="NP_388205.2"
                     /db_xref="EnsemblGenomes-Gn:BSU03230"
                     /db_xref="EnsemblGenomes-Tr:CAB12117"
                     /db_xref="GOA:P94393"
                     /db_xref="InterPro:IPR025736"
                     /db_xref="InterPro:IPR029016"
                     /db_xref="SubtiList:BG12014"
                     /db_xref="UniProtKB/Swiss-Prot:P94393"
                     /translation="MEELLERVFSFSDVDKLIDFISYELQKPVILESADFFLLAYNSY
                     YINHFDSANQQTIFSKKCPVQIFERFLKDGIIEKLKTEPEPFRVNKIESIGLNQRVVV
                     SAKHKGEVMGYIWIQELDQNLTDEELDFLYETSFHVGKIIYKTNKLKQEKEEKAEDLI
                     KRAIYQQFTSEKELRREAERINTVLPSMFSVVILHAANGDGEAVEDLKENIRSYLNLR
                     DKVSHVLTIESNIVIVVASFSQKSSVSSAASEFINKLLTHFHFQKIPTPIYIGIGNEY
                     NHLLKLGKSYTEALEVIKAAEITGNQENIPYEYAKLGIYRYLESIEQKNEFLEYENKD
                     LALLKAKDEESSTELLKTLEIYLLNNCKTKPAAEQLFIHQNTLNYRIKQITEMTSIDL
                     SDFRTRCQLYLDLMLMKKK*"
                     /label="putR CDS"
     gene            330291..331526
                     /gene="putR"
                     /locus_tag="BSU_03230"
                     /old_locus_tag="BSU03230"
                     /label="putR gene"
     promotor_-10    complement(331085..331103)
                     /Source="Nicolas_upshift_promotors"
                     /id="U244"
                     /multdbtbs="-"
                     /comp="M10"
                     /sig="SigD"
                     /pcomp="0.679320679320679"
                     /psig="0.679320679320679"
                     /xcortree=1717
                     /SigmaFactorBS="tcaagtgcttctgtgtagctcttgccaagttttaatagGTGA
                     TTATattcgtttccgatACCGATATAAATAGGGGTAggtattttttgaaagtgaaaat
                     g"
                     /listShort="S117"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(331102)
                     /Source="Nicolas_upshifts"
                     /id="U244"
                     /multdbtbs="-"
                     /comp="M10"
                     /sig="SigD"
                     /pcomp="0.679320679320679"
                     /psig="0.679320679320679"
                     /xcortree=1717
                     /SigmaFactorBS="tcaagtgcttctgtgtagctcttgccaagttttaatagGTGA
                     TTATattcgtttccgatACCGATATAAATAGGGGTAggtattttttgaaagtgaaaat
                     g"
                     /listShort="S117"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(331117..331124)
                     /Source="Nicolas_upshift_promotors"
                     /id="U244"
                     /multdbtbs="-"
                     /comp="M10"
                     /sig="SigD"
                     /pcomp="0.679320679320679"
                     /psig="0.679320679320679"
                     /xcortree=1717
                     /SigmaFactorBS="tcaagtgcttctgtgtagctcttgccaagttttaatagGTGA
                     TTATattcgtttccgatACCGATATAAATAGGGGTAggtattttttgaaagtgaaaat
                     g"
                     /listShort="S117"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     downshifts      complement(331510)
                     /Source="Nicolas_upshifts"
                     /id="D143"
                     /incds=0
                     /nref=1
                     /ntot=5
                     /MaxReadThrough="0.0291099999999993"
                     /MaxDrop="3.08474"
                     /score="-9.94728494"
                     /energy="-16.9"
                     /TU="NA"
                     /idTUdmin="U245"
                     /TUdmin=66
                     /isTUend="FALSE"
                     /label="downshifts"
     CDS             complement(331563..332420)
                     /gene="ycgQ"
                     /locus_tag="BSU_03240"
                     /old_locus_tag="BSU03240"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved protein of unknown function"
                     /protein_id="NP_388206.1"
                     /db_xref="EnsemblGenomes-Gn:BSU03240"
                     /db_xref="EnsemblGenomes-Tr:CAB12118"
                     /db_xref="GOA:P94394"
                     /db_xref="InterPro:IPR015402"
                     /db_xref="SubtiList:BG12015"
                     /db_xref="UniProtKB/Swiss-Prot:P94394"
                     /translation="MFRLLVLMGFTFFFYHLHASGNLTKYINMKYAYLSFIAIFLLAI
                     LTAVQAYLFIKSPEKSGHHHDHDCGCGHDHEHDHEQNKPFYQRYLIYVVFLFPLVSGI
                     FFPIATLDSSIVKTKGFSFKAMESGDHYSQTQYLRPDASLYYAQDSYDKQMKQLFNKY
                     SSKKEISLTDDDFLKGMETIYNYPGEFLGRTIEFHGFAYKGNAINKNQLFVLRFGIIH
                     CIADSGVYGMLVEFPKDMDIKDDEWIHIKGTLASEYYQPFKSTLPVVKVTDWNTIKKP
                     DDPYVYRGF*"
                     /label="ycgQ CDS"
     gene            complement(331563..332420)
                     /gene="ycgQ"
                     /locus_tag="BSU_03240"
                     /old_locus_tag="BSU03240"
                     /label="ycgQ gene"
     downshifts      complement(331576)
                     /Source="Nicolas_upshifts"
                     /id="D144"
                     /incds=0
                     /nref=48
                     /ntot=167
                     /MaxReadThrough="1.97725"
                     /MaxDrop="4.53007"
                     /score="-9.94728494"
                     /energy="-16.9"
                     /TU="NA"
                     /idTUdmin="U245"
                     /TUdmin=0
                     /isTUend="TRUE"
                     /label="downshifts"
     CDS             complement(332425..333309)
                     /gene="ycgR"
                     /locus_tag="BSU_03250"
                     /old_locus_tag="BSU03250"
                     /function="16.1: Circulate"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 15849754, 16850406;
                     Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="putative permease"
                     /protein_id="NP_388207.1"
                     /db_xref="EnsemblGenomes-Gn:BSU03250"
                     /db_xref="EnsemblGenomes-Tr:CAB12119"
                     /db_xref="GOA:P94395"
                     /db_xref="InterPro:IPR005524"
                     /db_xref="SubtiList:BG12016"
                     /db_xref="UniProtKB/Swiss-Prot:P94395"
                     /translation="MTAQSSFLQLNSIFISILIEAIPFILIGVILSGIIQMFVSEEMI
                     ARIMPKNRFLAVLFGALAGVLFPACECGIIPITRRLLLKGVPLHAGVAFMLTAPIINP
                     IVLFSTYIAFGNRWSVVFYRGGLALAVSLIIGVILSYQFKDNQLLKPDEPGHHHHHHG
                     TLLQKLGGTLRHAIDEFFSVGKYLIIGAFIAAAMQTYVKTSTLLAIGQNDVSSSLVMM
                     GLAFVLSLCSEVDAFIASSFSSTFSLGSLIAFLVFGAMVDIKNLLMMLAAFKKRFVFL
                     LITYIVVIVLAGSLLVKG*"
                     /label="ycgR CDS"
     gene            complement(332425..333309)
                     /gene="ycgR"
                     /locus_tag="BSU_03250"
                     /old_locus_tag="BSU03250"
                     /label="ycgR gene"
     upshifts        complement(333361)
                     /Source="Nicolas_upshifts"
                     /id="U245"
                     /multdbtbs="-"
                     /comp="M9"
                     /sig="SigWXY"
                     /pcomp="0.566433566433566"
                     /psig="0.566433566433566"
                     /xcortree=2523
                     /SigmaFactorBS="tttggaatcctaaccaaagTGAAACGATcctttcccctcctc
                     CGTCAAACAAGCAGtgcctttttttctggtatcataagaaaggcagcttaacatgagc
                     g"
                     /listShort="ycgR, ycgQ"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-10    complement(333366..333379)
                     /Source="Nicolas_upshift_promotors"
                     /id="U245"
                     /multdbtbs="-"
                     /comp="M9"
                     /sig="SigWXY"
                     /pcomp="0.566433566433566"
                     /psig="0.566433566433566"
                     /xcortree=2523
                     /SigmaFactorBS="tttggaatcctaaccaaagTGAAACGATcctttcccctcctc
                     CGTCAAACAAGCAGtgcctttttttctggtatcataagaaaggcagcttaacatgagc
                     g"
                     /listShort="ycgR, ycgQ"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     promotor_-35    complement(333394..333402)
                     /Source="Nicolas_upshift_promotors"
                     /id="U245"
                     /multdbtbs="-"
                     /comp="M9"
                     /sig="SigWXY"
                     /pcomp="0.566433566433566"
                     /psig="0.566433566433566"
                     /xcortree=2523
                     /SigmaFactorBS="tttggaatcctaaccaaagTGAAACGATcctttcccctcctc
                     CGTCAAACAAGCAGtgcctttttttctggtatcataagaaaggcagcttaacatgagc
                     g"
                     /listShort="ycgR, ycgQ"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             complement(333409..334263)
                     /gene="ycgS"
                     /locus_tag="BSU_03260"
                     /old_locus_tag="BSU03260"
                     /EC_number="3.7.1.-"
                     /function="16.11: Scavenge (Catabolism)"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative aromatic hydrocarbon hydrolase"
                     /protein_id="NP_388208.1"
                     /db_xref="EnsemblGenomes-Gn:BSU03260"
                     /db_xref="EnsemblGenomes-Tr:CAB12120"
                     /db_xref="GOA:P94396"
                     /db_xref="InterPro:IPR000073"
                     /db_xref="InterPro:IPR029058"
                     /db_xref="SubtiList:BG12017"
                     /db_xref="UniProtKB/Swiss-Prot:P94396"
                     /translation="MKRRVETITFDGGTLEYSVTGKGTPILVMHGGHSNCYEEFGYTA
                     LIEQGYSIITPSRPGYGRTSKEIGKSLANACRFYVKLLDHLQIESVHVIAISAGGPSG
                     ICFASHYPERVNTLTLQSAVTKEWLTPKDTEYKLGEILFRPPVEKWIWKLISSLNNAF
                     PRLMFRAMSPQFSTLPFQRIKSLMNEKDIEAFRKMNSRQRSGEGFLIDLSQTAAVSLK
                     DLQAIICPVLIMQSVYDGLVDLSHAHHAKEHIRGAVLCLLHSWGHLIWLGKEAAETGS
                     ILLGFLES*"
                     /label="ycgS CDS"
     gene            complement(333409..334263)
                     /gene="ycgS"
                     /locus_tag="BSU_03260"
                     /old_locus_tag="BSU03260"
                     /label="ycgS gene"
     promotor_-10    complement(334282..334301)
                     /Source="Nicolas_upshift_promotors"
                     /id="U246"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.715284715284715"
                     /psig=1
                     /xcortree=1859
                     /SigmaFactorBS="gtatatcatatttcaagggcctttgtttattcatttcttcta
                     cCTTGtggtcaattgctgaAAACTCTATAATAGGCAAAAaccaattgggtgaaacaga
                     t"
                     /listShort="ycgS, ycgR"
                     /listLong="ycgQ"
                     /label="promotor_-10"
     upshifts        complement(334302)
                     /Source="Nicolas_upshifts"
                     /id="U246"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.715284715284715"
                     /psig=1
                     /xcortree=1859
                     /SigmaFactorBS="gtatatcatatttcaagggcctttgtttattcatttcttcta
                     cCTTGtggtcaattgctgaAAACTCTATAATAGGCAAAAaccaattgggtgaaacaga
                     t"
                     /listShort="ycgS, ycgR"
                     /listLong="ycgQ"
                     /label="upshifts"
     promotor_-35    complement(334316..334319)
                     /Source="Nicolas_upshift_promotors"
                     /id="U246"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.715284715284715"
                     /psig=1
                     /xcortree=1859
                     /SigmaFactorBS="gtatatcatatttcaagggcctttgtttattcatttcttcta
                     cCTTGtggtcaattgctgaAAACTCTATAATAGGCAAAAaccaattgggtgaaacaga
                     t"
                     /listShort="ycgS, ycgR"
                     /listLong="ycgQ"
                     /label="promotor_-35"
     misc_feature    334353..334372
                     /Source="Nicolas_upshift_promotors"
                     /id="U247"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.762237762237762"
                     /psig="0.993006993006993"
                     /xcortree=2116
                     /SigmaFactorBS="ttcagcaattgaccacaaggtagaagaaatgaataaacaaag
                     gcccttgaaaTATGATATACTTTGTATTGAtattcattctcaattaaaactttgatat
                     a"
                     /listShort="S119, ycgT, S120"
                     /GFF_Attribute="listLong"
                     /label="promotor_single_box"
                     /note="Geneious type: promotor_single_box"
     promotor_-10    complement(334353..334371)
                     /Source="Nicolas_upshift_promotors"
                     /id="U248"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.966033966033966"
                     /psig="0.966033966033966"
                     /xcortree=774
                     /SigmaFactorBS="agccatccgtcctgcctcccgttcacatctatatcaaaGTTT
                     TAattgagaatgaatatCAATACAAAGTATATCATAtttcaagggcctttgtttattc
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     S_feature       334360..334424
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_352793_352857"
                     /HighExp="B60, Lbexp, LBGexp, dia0, B36, HiOs, GM 15, GM
                     10, Salt, dia5"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.993"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S119"
     upshifts        334361
                     /Source="Nicolas_upshifts"
                     /id="U247"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.762237762237762"
                     /psig="0.993006993006993"
                     /xcortree=2116
                     /SigmaFactorBS="ttcagcaattgaccacaaggtagaagaaatgaataaacaaag
                     gcccttgaaaTATGATATACTTTGTATTGAtattcattctcaattaaaactttgatat
                     a"
                     /listShort="S119, ycgT, S120"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     upshifts        complement(334370)
                     /Source="Nicolas_upshifts"
                     /id="U248"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.966033966033966"
                     /psig="0.966033966033966"
                     /xcortree=774
                     /SigmaFactorBS="agccatccgtcctgcctcccgttcacatctatatcaaaGTTT
                     TAattgagaatgaatatCAATACAAAGTATATCATAtttcaagggcctttgtttattc
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(334387..334392)
                     /Source="Nicolas_upshift_promotors"
                     /id="U248"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.966033966033966"
                     /psig="0.966033966033966"
                     /xcortree=774
                     /SigmaFactorBS="agccatccgtcctgcctcccgttcacatctatatcaaaGTTT
                     TAattgagaatgaatatCAATACAAAGTATATCATAtttcaagggcctttgtttattc
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             334425..335435
                     /gene="ffoR"
                     /locus_tag="BSU_03270"
                     /old_locus_tag="BSU03270"
                     /EC_number="1.18.1.-"
                     /EC_number="1.8.1.-"
                     /function="16.6: Maintain"
                     /function="16.8: Protect"
                     /experiment="publication(s) with functional evidences,
                     PMID:16672620, 25826316"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 16672620, 25826316;
                     Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="Fur-regulated NADPH:ferredoxin oxidoreductase"
                     /protein_id="NP_388209.1"
                     /db_xref="EnsemblGenomes-Gn:BSU03270"
                     /db_xref="EnsemblGenomes-Tr:CAB12121"
                     /db_xref="GOA:O31475"
                     /db_xref="InterPro:IPR000103"
                     /db_xref="InterPro:IPR022890"
                     /db_xref="InterPro:IPR023753"
                     /db_xref="InterPro:IPR036188"
                     /db_xref="SubtiList:BG12018"
                     /db_xref="UniProtKB/Swiss-Prot:O31475"
                     /translation="MAENQEVYDVTIIGGGPIGLFTAFYCGMRELKTKVIEFLPKLGG
                     KVSLFFPEKIIRDIGGIPGIAGKQLIEQLKEQAATFDPDIVLNQRVTGFERLDDGTIV
                     LTGSEGKKHYTRTVILACGMGTLEVNEFDSEDAARYAGKNLHYGVEKLDAFKGKRVVI
                     SGGGDTAVDWANELEPIAASVTVVHRREEFGGMESSVTKMKQSSVRVLTPYRLEQLNG
                     DEEGIKSVTVCHTESGQRKDIEIDELIINHGFKIDLGPMMEWGLEIEEGRVKADRHMR
                     TNLPGVFVAGDAAFYESKLRLIAGGFTEGPTAVNSAKAYLDPKAENMAMYSTHHKKLV
                     HK*"
                     /label="ffoR CDS"
     gene            334425..335435
                     /gene="ffoR"
                     /locus_tag="BSU_03270"
                     /old_locus_tag="BSU03270"
                     /label="ffoR gene"
     S_feature       335436..337883
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_353869_356316"
                     /HighExp="B60, Lbexp, GM 10, GM 25, HiOs, GM 15, dia0, GM
                     45, LBGexp, H2O2"
                     /AntisenseName="nasF"
                     /AntisenseCor="-0.30348565853404702"
                     /AntisenseRegPval="-6.4"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.993"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S120"
     CDS             complement(335467..336918)
                     /gene="nasF"
                     /locus_tag="BSU_03280"
                     /old_locus_tag="BSU03280"
                     /EC_number="2.1.1.107"
                     /function="16.10: Respire"
                     /function="16.2: Construct biomass (Anabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:9765565, 10217486, 15028686"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 9765565, 10217486,
                     15028686; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="uroporphyrin-III C-methyltransferase"
                     /protein_id="NP_388210.1"
                     /db_xref="EnsemblGenomes-Gn:BSU03280"
                     /db_xref="EnsemblGenomes-Tr:CAB12122"
                     /db_xref="GOA:P42437"
                     /db_xref="InterPro:IPR000878"
                     /db_xref="InterPro:IPR003043"
                     /db_xref="InterPro:IPR006366"
                     /db_xref="InterPro:IPR012409"
                     /db_xref="InterPro:IPR014776"
                     /db_xref="InterPro:IPR014777"
                     /db_xref="InterPro:IPR035996"
                     /db_xref="InterPro:IPR036108"
                     /db_xref="SubtiList:BG11098"
                     /db_xref="UniProtKB/Swiss-Prot:P42437"
                     /translation="MIMKNGIVYFVGAGPGDPGLLTIKGKQALKEADVILYDRLANPK
                     LLEFASPDCQFIYCGKLPNRHFMKQKEINALLVEKALNGLTVVRLKGGDPSVFGRVGE
                     EADALHEHGIRYEMVPGITSGIAAPLYAGIPVTHRDFASSFAMITAHDKSLKGTPNLD
                     WEGLARSVQTLVFYMGVKNLSYICQQLISYGKSPSVPVIVIQWGTWGRQRSVKGTLEN
                     IQQKVQEHQITNPAIIVIGDIVNFQTHSWFESKPLIGRHLMVVTHGEDEDPLADKLRD
                     SGADLIEWPKWRTENMPVNEEILRKIGTFEDVFFTSRRAVCEFFRALASQKIDIRQLT
                     AKLSAASEQAKTELEKRGFLVTAIQPDSEKRLVVGSRHAVENMQKHESCSFYITHENV
                     IDDRFTHMIQRTISESPLHMVICPNKLSVQQLINGGEQIGILPEPSASRPPIVCIGDD
                     SAAGIYGFTAVQEQDELLAFIHNQHAEKKLLHT*"
                     /label="nasF CDS"
     gene            complement(335467..336918)
                     /gene="nasF"
                     /locus_tag="BSU_03280"
                     /old_locus_tag="BSU03280"
                     /label="nasF gene"
     downshifts      complement(335471)
                     /Source="Nicolas_upshifts"
                     /id="D145"
                     /incds=0
                     /nref=131
                     /ntot=230
                     /MaxReadThrough="1.40657"
                     /MaxDrop="6.58881"
                     /score="10.9556399"
                     /energy="-11.7"
                     /TU="NA"
                     /idTUdmin="U250"
                     /TUdmin="-1"
                     /isTUend="TRUE"
                     /label="downshifts"
     CDS             complement(336979..337299)
                     /gene="nasE"
                     /locus_tag="BSU_03290"
                     /old_locus_tag="BSU03290"
                     /EC_number="1.7.1.4"
                     /function="16.2: Construct biomass (Anabolism)"
                     /function="16.10: Respire"
                     /experiment="publication(s) with functional evidences,
                     PMID:10217486, 15028686, 9765565, 22103536"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 10217486, 15028686,
                     9765565, 22103536; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="assimilatory nitrite reductase subunit"
                     /protein_id="NP_388211.1"
                     /db_xref="EnsemblGenomes-Gn:BSU03290"
                     /db_xref="EnsemblGenomes-Tr:CAB12123"
                     /db_xref="GOA:P42436"
                     /db_xref="InterPro:IPR012748"
                     /db_xref="InterPro:IPR017941"
                     /db_xref="InterPro:IPR036922"
                     /db_xref="SubtiList:BG11097"
                     /db_xref="UniProtKB/Swiss-Prot:P42436"
                     /translation="MVNKDVTKVCIGKIEELPEQLGKTVYIEDKELAVFKLSDGSIRA
                     IENRCPHKGGVLAEGIVSGQYVFCPMHDWKISLEDGIVQEPDHGCVKTYETLIEGEHV
                     YLVY*"
                     /label="nasE CDS"
     gene            complement(336979..337299)
                     /gene="nasE"
                     /locus_tag="BSU_03290"
                     /old_locus_tag="BSU03290"
                     /label="nasE gene"
     promotor_-35    337150..337155
                     /Source="Nicolas_upshift_promotors"
                     /id="U249"
                     /multdbtbs="-"
                     /comp="M13"
                     /sig="Sig-"
                     /pcomp="0.965034965034965"
                     /psig="0.00899100899100899"
                     /xcortree=84
                     /SigmaFactorBS="tgacgatgccttctgccaggacgccgcccttatgCGGACAgc
                     ggttttcaatgGCGCGgatgcttccgtctgaaagcttgaaaaccgcgagctccttatc
                     t"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    337169..337173
                     /Source="Nicolas_upshift_promotors"
                     /id="U249"
                     /multdbtbs="-"
                     /comp="M13"
                     /sig="Sig-"
                     /pcomp="0.965034965034965"
                     /psig="0.00899100899100899"
                     /xcortree=84
                     /SigmaFactorBS="tgacgatgccttctgccaggacgccgcccttatgCGGACAgc
                     ggttttcaatgGCGCGgatgcttccgtctgaaagcttgaaaaccgcgagctccttatc
                     t"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        337176
                     /Source="Nicolas_upshifts"
                     /id="U249"
                     /multdbtbs="-"
                     /comp="M13"
                     /sig="Sig-"
                     /pcomp="0.965034965034965"
                     /psig="0.00899100899100899"
                     /xcortree=84
                     /SigmaFactorBS="tgacgatgccttctgccaggacgccgcccttatgCGGACAgc
                     ggttttcaatgGCGCGgatgcttccgtctgaaagcttgaaaaccgcgagctccttatc
                     t"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     upshifts        complement(337208)
                     /Source="Nicolas_upshifts"
                     /id="U250"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.853146853146853"
                     /psig="0.957042957042957"
                     /xcortree=1590
                     /SigmaFactorBS="tcggaaaaattgaagaatTGCCTGAAcaattaggcaaaaCAG
                     TGTATATTGAAGATAAGgagctcgcggttttcaagctttcagacggaagcatccgcgc
                     c"
                     /listShort="nasF"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-10    complement(337210..337229)
                     /Source="Nicolas_upshift_promotors"
                     /id="U250"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.853146853146853"
                     /psig="0.957042957042957"
                     /xcortree=1590
                     /SigmaFactorBS="tcggaaaaattgaagaatTGCCTGAAcaattaggcaaaaCAG
                     TGTATATTGAAGATAAGgagctcgcggttttcaagctttcagacggaagcatccgcgc
                     c"
                     /listShort="nasF"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     promotor_-35    complement(337243..337250)
                     /Source="Nicolas_upshift_promotors"
                     /id="U250"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.853146853146853"
                     /psig="0.957042957042957"
                     /xcortree=1590
                     /SigmaFactorBS="tcggaaaaattgaagaatTGCCTGAAcaattaggcaaaaCAG
                     TGTATATTGAAGATAAGgagctcgcggttttcaagctttcagacggaagcatccgcgc
                     c"
                     /listShort="nasF"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             complement(337331..339748)
                     /gene="nasD"
                     /locus_tag="BSU_03300"
                     /old_locus_tag="BSU03300"
                     /EC_number="1.7.1.4"
                     /function="16.2: Construct biomass (Anabolism)"
                     /function="16.10: Respire"
                     /experiment="publication(s) with functional evidences,
                     PMID:10972836, 15028686, 9765565, 16428414, 22103536"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 10972836, 15028686,
                     9765565, 16428414, 22103536; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="assimilatory nitrite reductase subunit"
                     /protein_id="NP_388212.1"
                     /db_xref="EnsemblGenomes-Gn:BSU03300"
                     /db_xref="EnsemblGenomes-Tr:CAB12124"
                     /db_xref="GOA:P42435"
                     /db_xref="InterPro:IPR005117"
                     /db_xref="InterPro:IPR006066"
                     /db_xref="InterPro:IPR006067"
                     /db_xref="InterPro:IPR007419"
                     /db_xref="InterPro:IPR012744"
                     /db_xref="InterPro:IPR017121"
                     /db_xref="InterPro:IPR023753"
                     /db_xref="InterPro:IPR036136"
                     /db_xref="InterPro:IPR036188"
                     /db_xref="SubtiList:BG11096"
                     /db_xref="UniProtKB/Swiss-Prot:P42435"
                     /translation="MGKKQLVLVGNGMAGVRAIEEILSVAKDEFQITIFGAEPHPNYN
                     RILLSKVLQGDTDIKDITLNDWDWYEENNIQLYTNETVIKVDTENKTVITDADRIQPY
                     DELILATGSVPFILPIPGADKKGVTAFRDIKDTDTMLAASKQYKKAAVIGGGLLGLEA
                     ARGLLNLGMDVSVIHLAPFLMERQLDATAGRLLQNELEKQGMTFLLEKQTEEIVGDDR
                     VEGLRFKDGTSIEADLVVMAVGIRPNTTLGAESGIPVNRGIIVNDYMQTEIPHIYAVG
                     ECAEHRGIAYGLVAPLYEQAKVLAKHMCGIETKPYEGSVLSTQLKVSGVEVFSAGDFN
                     ESEEKKAIKVFDEQDGIYKKIVLRGNQIVGAVLFGDSSEGNRLFSMIQKEADISETSK
                     ISILQPLSQEAGTSITAAMSDDEIICGCNGVSKGAIIQAIQEKGCSSTDEIKACTGAS
                     RSCGGCKPLVEEILQHTLGSDFDASAQKEAICGCTTLSRDEVVEEIKAKGLSHTREVM
                     NVLGWKTPEGCSKCRPALNYYLGMINPTKYEDDRTSRFVNERMHANIQKDGTYSVVPR
                     MYGGVTNSTDLRKIADVVDKYEIPLVKMTGGQRIDLIGVKKEDLPKVWEDLDMPSGYA
                     YGKTLRTVKTCVGEQFCRFGTQDSMALGIALEKKFEGLNTPHKVKMAVSACPRNCAES
                     GIKDLGVVGIDGGWELYVGGNGGTHLRAGDLLMKVKTNEEVLEYAGAYLQYYRETANY
                     LERTSAWLERVGLSHVQSVLNDPEKRQELNGRMNETLSVHKDPWKDFLEDKQTSKELF
                     ENVVTTS*"
                     /label="nasD CDS"
     gene            complement(337331..339748)
                     /gene="nasD"
                     /locus_tag="BSU_03300"
                     /old_locus_tag="BSU03300"
                     /label="nasD gene"
     promotor_-10    complement(339773..339792)
                     /Source="Nicolas_upshift_promotors"
                     /id="U251"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.915084915084915"
                     /psig="0.998001998001998"
                     /xcortree=1620
                     /SigmaFactorBS="cttttcgtatattttgttacattttataacatgtatcTTAAA
                     TAttcctttttgcTGTGCTACGCTGGAAAAAACatttgataaggagcggatcatctga
                     t"
                     /listShort="nasD, nasE, nasF"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(339787)
                     /Source="Nicolas_upshifts"
                     /id="U251"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.915084915084915"
                     /psig="0.998001998001998"
                     /xcortree=1620
                     /SigmaFactorBS="cttttcgtatattttgttacattttataacatgtatcTTAAA
                     TAttcctttttgcTGTGCTACGCTGGAAAAAACatttgataaggagcggatcatctga
                     t"
                     /listShort="nasD, nasE, nasF"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(339804..339810)
                     /Source="Nicolas_upshift_promotors"
                     /id="U251"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.915084915084915"
                     /psig="0.998001998001998"
                     /xcortree=1620
                     /SigmaFactorBS="cttttcgtatattttgttacattttataacatgtatcTTAAA
                     TAttcctttttgcTGTGCTACGCTGGAAAAAACatttgataaggagcggatcatctga
                     t"
                     /listShort="nasD, nasE, nasF"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             complement(339870..342002)
                     /gene="nasC"
                     /locus_tag="BSU_03310"
                     /old_locus_tag="BSU03310"
                     /EC_number="1.7.99.4"
                     /function="16.2: Construct biomass (Anabolism)"
                     /function="16.11: Scavenge (Catabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:10972836, 15028686, 9765565"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 10972836, 15028686,
                     9765565; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="assimilatory nitrate reductase (catalytic
                     subunit)"
                     /protein_id="NP_388213.2"
                     /db_xref="EnsemblGenomes-Gn:BSU03310"
                     /db_xref="EnsemblGenomes-Tr:CAB12125"
                     /db_xref="GOA:P42434"
                     /db_xref="InterPro:IPR006655"
                     /db_xref="InterPro:IPR006656"
                     /db_xref="InterPro:IPR006657"
                     /db_xref="InterPro:IPR006963"
                     /db_xref="InterPro:IPR009010"
                     /db_xref="InterPro:IPR027467"
                     /db_xref="SubtiList:BG11095"
                     /db_xref="UniProtKB/Swiss-Prot:P42434"
                     /translation="MTERLLRYFRDKQQDVQSEKTYDTQCPFCSMQCKMQLVEQTIVT
                     RKKYTAIGIDNPTTQGRLCIKGMNAHQHALNSSRITRPLLKKNGEFMPVSWEEALNHI
                     KDQVTMIQTEHGHDAMAVYGSASITNEEAYLLGKFARVGLQTKYIDYNGRLCMSAAAT
                     AANQTFGADRGLTNPLSDIPHTRVIILAGTNIAECQPTIMPYFEKAKENGAYFIAIDP
                     RETATTKIADLHLKIKPGTDAALANGLVKIIIDEQLINEDFIQSRTNGFEELKQHTDS
                     LDLNDIAEQTSVSLVDIRKAAVKFAKETSGMLFTARGIEQQTDGTAAVKGFLNMVLIT
                     GKIGKPYSGYGAITGQGNGQGAREHGQKADQLPGYRSIENEEHRAHIAKVWGIHQDEL
                     PRKGVSAYEMMEKINDGDIKGLFLMCSNPAVSSPNANLVKKALRRLTFFVAIDLFISE
                     TAKYADVILPASSYLEDEGTMTNVEGRVTLREASRPCPGEAKHDWQIICDLASALGKG
                     RYFSYTSAEDIFNELREASRGGIADYSGISYGRLRREGGIHWPCPESDHPGTGRLFTE
                     SFAHPDQKAALSVIPNEPPVPKEKPTADYPLYLTTGRVMSHYLTGVQTRKSAALAARH
                     FESFMEIHPQTAATYNIEDRVLVKIESPRGSITVRSKLSEQIRKDTVFVPIHWADAQN
                     VNDLIGEALDPACKMPGFKVCAVRIIPI*"
                     /label="nasC CDS"
     gene            complement(339870..342002)
                     /gene="nasC"
                     /locus_tag="BSU_03310"
                     /old_locus_tag="BSU03310"
                     /label="nasC gene"
     CDS             complement(342009..344324)
                     /gene="nasB"
                     /locus_tag="BSU_03320"
                     /old_locus_tag="BSU03320"
                     /EC_number="1.7.1.3"
                     /function="16.2: Construct biomass (Anabolism)"
                     /function="16.11: Scavenge (Catabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:7836289, 8799114, 9765565, 10940050, 10972836,
                     15028686, 24122235"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 7836289, 8799114,
                     9765565, 10940050, 10972836, 15028686, 24122235; Product
                     type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="assimilatory nitrate reductase (electron
                     transfer subunit NasB)"
                     /protein_id="NP_388214.2"
                     /db_xref="EnsemblGenomes-Gn:BSU03320"
                     /db_xref="EnsemblGenomes-Tr:CAB12126"
                     /db_xref="GOA:P42433"
                     /db_xref="InterPro:IPR005117"
                     /db_xref="InterPro:IPR007419"
                     /db_xref="InterPro:IPR012744"
                     /db_xref="InterPro:IPR017121"
                     /db_xref="InterPro:IPR023753"
                     /db_xref="InterPro:IPR036136"
                     /db_xref="InterPro:IPR036188"
                     /db_xref="SubtiList:BG11094"
                     /db_xref="UniProtKB/Swiss-Prot:P42433"
                     /translation="MKKQRLVLAGNGMAGIRCIEEVLKLNRHMFEIVIFGSEPHPNYN
                     RILLSSVLQGEASLDDITLNSKDWYDKHGITLYTGETVIQIDTDQQQVITDRKRTLSY
                     DKLIVATGSSPHILPIPGADKKGVYGFRTIEDCQALMNMAQHFQKAAVIGAGLLGLEA
                     AVGLQHLGMDVSVIHHSAGIMQKQLDQTAARLLQTELEQKGLTFLLEKDTVSISGATK
                     ADRIHFKDGSSLKADLIVMAAGVKPNIELAVSAGIKVNRGIIVNDFMQTSEPNIYAVG
                     ECAEHNGTVYGLVAPLYEQGKALASHICGVPCEEYQGSAPSAALKIAGIDVWSAGKIQ
                     EDERTTSIKIYDEQAGVYKKALFVDDKLAGVILFGDTRDKQRLLDSLLKQRDISIAKK
                     QIIEPETSGPLFESMPSSETICQCNTVTKGAIEDAVHTNSLTTVEEVKHCTKATGSCG
                     GCKPLVEDLLRYMTNSEYTKPASTPSFCSCTDFTEDDIIAELQRRPFTNPAEVMNQLD
                     WKTKNGCSTCVPAIQYYLEMLYPGFVQPEPATEETCILIPQMYGGRTNAEQLRTIANI
                     IEAYSIPDVSITHGQRLKLSGIKPADLPNMKKDLKMPVYTNEHRHALQSIKACTCGQN
                     RSIQQLAAQIERQLEMLPLPAPISISLSCETDCTEAALQDVGAIRTQAGWDIHIGGVR
                     GTHARSGALFCVTENEDSTAGMIKGLIQYYRETAHYLEGVHQWIDRLGIVHIREVLFE
                     EDLRAQLLESLQTDLSLIQNPTVETGAYKKG*"
                     /label="nasB CDS"
     gene            complement(342009..344324)
                     /gene="nasB"
                     /locus_tag="BSU_03320"
                     /old_locus_tag="BSU03320"
                     /label="nasB gene"
     promotor_no_box complement(344343..344443)
                     /Source="Nicolas_upshift_promotors"
                     /id="U252"
                     /multdbtbs="SigA"
                     /comp="M21"
                     /sig="Sig-"
                     /pcomp="0.241758241758242"
                     /psig="0.410589410589411"
                     /xcortree=313
                     /SigmaFactorBS="ttattttctggaaaagacatgtgtaagtttttgtgacacgtt
                     taatgcgttaacaatgcattgtgacataatttttaataggagaaaacttacgagcttc
                     g"
                     /listShort="nasB, nasC, nasD, nasE, nasF"
                     /GFF_Attribute="listLong"
                     /label="promotor_no_box"
     upshifts        complement(344383)
                     /Source="Nicolas_upshifts"
                     /id="U252"
                     /multdbtbs="SigA"
                     /comp="M21"
                     /sig="Sig-"
                     /pcomp="0.241758241758242"
                     /psig="0.410589410589411"
                     /xcortree=313
                     /SigmaFactorBS="ttattttctggaaaagacatgtgtaagtttttgtgacacgtt
                     taatgcgttaacaatgcattgtgacataatttttaataggagaaaacttacgagcttc
                     g"
                     /listShort="nasB, nasC, nasD, nasE, nasF"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    344426..344433
                     /Source="Nicolas_upshift_promotors"
                     /id="U253"
                     /multdbtbs="SigA"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.613386613386613"
                     /psig="0.928071928071928"
                     /xcortree=319
                     /SigmaFactorBS="ttaaacgtgtcacaaaaacttacacatGTCTTTTCcagaaaa
                     taatggTCCTATATCCTTGATTCAGAaaatgtaaaataatgagggtctagaaagggga
                     a"
                     /listShort="nasA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    344447..344466
                     /Source="Nicolas_upshift_promotors"
                     /id="U253"
                     /multdbtbs="SigA"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.613386613386613"
                     /psig="0.928071928071928"
                     /xcortree=319
                     /SigmaFactorBS="ttaaacgtgtcacaaaaacttacacatGTCTTTTCcagaaaa
                     taatggTCCTATATCCTTGATTCAGAaaatgtaaaataatgagggtctagaaagggga
                     a"
                     /listShort="nasA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        344459
                     /Source="Nicolas_upshifts"
                     /id="U253"
                     /multdbtbs="SigA"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.613386613386613"
                     /psig="0.928071928071928"
                     /xcortree=319
                     /SigmaFactorBS="ttaaacgtgtcacaaaaacttacacatGTCTTTTCcagaaaa
                     taatggTCCTATATCCTTGATTCAGAaaatgtaaaataatgagggtctagaaagggga
                     a"
                     /listShort="nasA"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             344504..345709
                     /gene="nasA"
                     /locus_tag="BSU_03330"
                     /old_locus_tag="BSU03330"
                     /function="16.1: Circulate"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 7868621, 12823818,
                     15849754, 16850406; Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="putative nitrate transporter"
                     /protein_id="NP_388215.2"
                     /db_xref="EnsemblGenomes-Gn:BSU03330"
                     /db_xref="EnsemblGenomes-Tr:CAB12127"
                     /db_xref="GOA:P42432"
                     /db_xref="InterPro:IPR004737"
                     /db_xref="InterPro:IPR011701"
                     /db_xref="InterPro:IPR020846"
                     /db_xref="InterPro:IPR036259"
                     /db_xref="SubtiList:BG11093"
                     /db_xref="UniProtKB/Swiss-Prot:P42432"
                     /translation="MKLSELKTSGHPLTLLCSFLYFDVSFMIWVMLGALGVYISQDFG
                     LSPFEKGLVVAVPILSGSVFRIILGILTDRIGPKKTAVIGMLVTMIPLLWGTFGGRSL
                     TELYAIGILLGVAGASFAVALPMASRWYPPHLQGLAMGIAGAGNSGTLFATLFGPRLA
                     EQFGWHIVMGIALIPLLIVFILFVSMAKDSPAQPSPQPLKSYLHVFGQKETWFFCLLY
                     SVTFGGFVGLSSFLSIFFVDQYQLSKIHAGDFVTLCVAAGSFFRPVGGLISDRVGGTK
                     VLSVLFVIVALCMAGVSSLPSLSMVIVLLFVGMMGLGMGNGAVFQLVPQRFRKEIGMV
                     TGIVGAAGGIGGFFLPNILGSLKQMTGTYAIGFITFSCIALLAFALVLAAGYYWRKSW
                     SAESSPADV*"
                     /label="nasA CDS"
     gene            344504..345709
                     /gene="nasA"
                     /locus_tag="BSU_03330"
                     /old_locus_tag="BSU03330"
                     /label="nasA gene"
     downshifts      345694
                     /Source="Nicolas_upshifts"
                     /id="D146"
                     /incds=0
                     /nref=1
                     /ntot=3
                     /MaxReadThrough="2.02479"
                     /MaxDrop="3.6823"
                     /score="39.2612286"
                     /energy="-11.9"
                     /TU="NA"
                     /idTUdmin="U253"
                     /TUdmin=0
                     /isTUend="TRUE"
                     /label="downshifts"
     promotor_-35    345753..345759
                     /Source="Nicolas_upshift_promotors"
                     /id="U254"
                     /multdbtbs="SigA"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp="0.362637362637363"
                     /psig="0.998001998001998"
                     /xcortree=667
                     /SigmaFactorBS="cacgcgtttgtgcgtgtcttttttattttctCTTGATTttca
                     acagtgaaccGATCAAAATAAATAGTAATTattacgatttgttagtgagaggagtttt
                     c"
                     /listShort="folEB, yciB"
                     /listLong="yczL, yciC"
                     /label="promotor_-35"
     promotor_-10    345774..345793
                     /Source="Nicolas_upshift_promotors"
                     /id="U254"
                     /multdbtbs="SigA"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp="0.362637362637363"
                     /psig="0.998001998001998"
                     /xcortree=667
                     /SigmaFactorBS="cacgcgtttgtgcgtgtcttttttattttctCTTGATTttca
                     acagtgaaccGATCAAAATAAATAGTAATTattacgatttgttagtgagaggagtttt
                     c"
                     /listShort="folEB, yciB"
                     /listLong="yczL, yciC"
                     /label="promotor_-10"
     upshifts        345782
                     /Source="Nicolas_upshifts"
                     /id="U254"
                     /multdbtbs="SigA"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp="0.362637362637363"
                     /psig="0.998001998001998"
                     /xcortree=667
                     /SigmaFactorBS="cacgcgtttgtgcgtgtcttttttattttctCTTGATTttca
                     acagtgaaccGATCAAAATAAATAGTAATTattacgatttgttagtgagaggagtttt
                     c"
                     /listShort="folEB, yciB"
                     /listLong="yczL, yciC"
                     /label="upshifts"
     CDS             345826..346740
                     /gene="folEB"
                     /locus_tag="BSU_03340"
                     /old_locus_tag="BSU03340"
                     /EC_number="3.5.4.16"
                     /function="16.2: Construct biomass (Anabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:12426338, 17032654, 19767425"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 12426338, 17032654,
                     19767425; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="GTP cyclohydrolase I"
                     /protein_id="NP_388216.2"
                     /db_xref="EnsemblGenomes-Gn:BSU03340"
                     /db_xref="EnsemblGenomes-Tr:CAB12128"
                     /db_xref="GOA:P94398"
                     /db_xref="InterPro:IPR003801"
                     /db_xref="InterPro:IPR022838"
                     /db_xref="SubtiList:BG12019"
                     /db_xref="UniProtKB/Swiss-Prot:P94398"
                     /translation="MNQHTLLPKKTERLQYFGSVSPIKGEKPVEKEKMKDLQNIRKDY
                     FFDIQHVGVANVSHPVTITSAMMPAEQTTAANFTMTCNLPRNQKGINMSRLTELLQVY
                     HQNGWILSFSSLQQFTKELAENMDTSSATVEVRFPWFFERKSPKLEKAGLMHADIFMS
                     VTYRKDQPFKQRAGISAKVTTLCPCSKEISEYSAHNQRGTVSIWADIHPAASLPSDVK
                     ADLLHAAESNASARLHPVLKRPDEKAVTETAYENPRFVEDLARLIAADLFELEWVSAF
                     EIECRNEESIHLHDAYAKLCFSKEVDKI*"
                     /label="folEB CDS"
     gene            345826..346740
                     /gene="folEB"
                     /locus_tag="BSU_03340"
                     /old_locus_tag="BSU03340"
                     /label="folEB gene"
     CDS             346737..347321
                     /gene="yciB"
                     /locus_tag="BSU_03350"
                     /old_locus_tag="BSU03350"
                     /function="16.1: Circulate"
                     /function="16.13: Shape"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 12426338, 20013255;
                     Product type f: factor"
                     /codon_start=1
                     /transl_table=11
                     /product="putative Zn(2+)-dependent division lipoprotein
                     (schizosome)"
                     /protein_id="NP_388217.2"
                     /db_xref="EnsemblGenomes-Gn:BSU03350"
                     /db_xref="EnsemblGenomes-Tr:CAB12129"
                     /db_xref="GOA:C0SP99"
                     /db_xref="InterPro:IPR005490"
                     /db_xref="SubtiList:BG12020"
                     /db_xref="UniProtKB/Swiss-Prot:C0SP99"
                     /translation="MKLSLFIIAVLMPVILLSACSDHAEEHASINTKKTVENITDVRK
                     TAKTSIDWTKPSGGEYPDIKQKHVWIDVNVKEQKAYIKEGSNTIYTMMISSGLDQTKD
                     DATPKGTFYVEPERGEWFFSEGYQEGAEYWVSWKNHGEFLFHSVPMTKDQKVIKTEAE
                     KLGTKASHGCIRLTIPDAKWVYENIPEHTKVVIS*"
                     /label="yciB CDS"
     gene            346737..347321
                     /gene="yciB"
                     /locus_tag="BSU_03350"
                     /old_locus_tag="BSU03350"
                     /label="yciB gene"
     promotor_-35    347332..347339
                     /Source="Nicolas_upshift_promotors"
                     /id="U255"
                     /multdbtbs="SigA"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp="0.671328671328671"
                     /psig=1
                     /xcortree=668
                     /SigmaFactorBS="aaaagtggtgatcagctgaattgaaaaccGTTGACAAaaagg
                     aaaaaagaCCATACAATTTAAATCGTAAcaattacgttttatgataaatggcttatca
                     t"
                     /listShort="yczL, yciC, S121"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    347353..347372
                     /Source="Nicolas_upshift_promotors"
                     /id="U255"
                     /multdbtbs="SigA"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp="0.671328671328671"
                     /psig=1
                     /xcortree=668
                     /SigmaFactorBS="aaaagtggtgatcagctgaattgaaaaccGTTGACAAaaagg
                     aaaaaagaCCATACAATTTAAATCGTAAcaattacgttttatgataaatggcttatca
                     t"
                     /listShort="yczL, yciC, S121"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        347363
                     /Source="Nicolas_upshifts"
                     /id="U255"
                     /multdbtbs="SigA"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp="0.671328671328671"
                     /psig=1
                     /xcortree=668
                     /SigmaFactorBS="aaaagtggtgatcagctgaattgaaaaccGTTGACAAaaagg
                     aaaaaagaCCATACAATTTAAATCGTAAcaattacgttttatgataaatggcttatca
                     t"
                     /listShort="yczL, yciC, S121"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             347417..347602
                     /gene="yczL"
                     /locus_tag="BSU_03359"
                     /old_locus_tag="BSU03359"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 5: Unknown function"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_003097674.1"
                     /db_xref="EnsemblGenomes-Gn:BSU03359"
                     /db_xref="EnsemblGenomes-Tr:CAX52544"
                     /db_xref="UniProtKB/Swiss-Prot:C0H3U7"
                     /translation="MKSGKASIKDLAVGKGKDLRWGKGLNAVGVFTDLEIGRQREMSA
                     KSCSTPLYIRRSIQFKS*"
                     /label="yczL CDS"
     gene            347417..347602
                     /gene="yczL"
                     /locus_tag="BSU_03359"
                     /old_locus_tag="BSU03359"
                     /label="yczL gene"
     CDS             347630..348823
                     /gene="zinU"
                     /locus_tag="BSU_03360"
                     /old_locus_tag="BSU03360"
                     /function="16.1: Circulate"
                     /experiment="publication(s) with functional evidences,
                     PMID:2013568, 9811636, 12426338, 18344368, 19648245,
                     27060116, 27561249"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 2013568, 9811636,
                     12426338, 18344368, 19648245, 27060116, 27561249; Product
                     type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="zinc metallochaperone with NTPase activity"
                     /protein_id="NP_388218.1"
                     /db_xref="EnsemblGenomes-Gn:BSU03360"
                     /db_xref="EnsemblGenomes-Tr:CAB12130"
                     /db_xref="GOA:P94400"
                     /db_xref="InterPro:IPR003495"
                     /db_xref="InterPro:IPR011629"
                     /db_xref="InterPro:IPR027417"
                     /db_xref="InterPro:IPR036627"
                     /db_xref="SubtiList:BG12021"
                     /db_xref="UniProtKB/Swiss-Prot:P94400"
                     /translation="MKKIPVTVLSGYLGAGKTTLLNSILQNREGLKIAVIVNDMSEVN
                     IDAGLVKQEGGLSRTDEKLVEMSNGCICCTLREDLLIEVEKLAKDGRFDYIVIESTGI
                     SEPIPVAQTFSYIDEEMGIDLTKFCQLDTMVTVVDANRFWHDYQSGESLLDRKEALGE
                     KDEREIADLLIDQIEFCDVLILNKCDLVSEQELEQLENVLRKLQPRARFIRSVKGNVK
                     PQEILHTGLFNFEEASGSAGWIQELTAGHAEHTPETEEYGISSFVYKRRLPFHSTRFY
                     RWLDQMPKNVVRAKGIVWCASHNNLALLMSQAGPSVTIEPVSYWVAALPKLEQEQVKQ
                     QEPEILEEWDPEFGDRLTQLVFIGTDLDEETITKELDQCLLTEYEFDSDWSLFEDPFK
                     WKLNQ*"
                     /label="zinU CDS"
     gene            347630..348823
                     /gene="zinU"
                     /locus_tag="BSU_03360"
                     /old_locus_tag="BSU03360"
                     /label="zinU gene"
     downshifts      348815
                     /Source="Nicolas_upshifts"
                     /id="D147"
                     /incds=0
                     /nref=26
                     /ntot=45
                     /MaxReadThrough="5.12378"
                     /MaxDrop="5.8275"
                     /score="15.6427627"
                     /energy="-9.2"
                     /TU="U255"
                     /idTUdmin="U255"
                     /TUdmin="-792"
                     /isTUend="FALSE"
                     /label="downshifts"
     S_feature       348860..350529
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_367293_368962"
                     /HighExp="Etha, B60, Cold, Heat, B36, C30, BMM, S6, C90,
                     S2"
                     /AntisenseName="yckB"
                     /AntisenseCor="-0.170121935628575"
                     /AntisenseRegPval="-2.2999999999999998"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig=1
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S121"
     CDS             complement(348872..349552)
                     /gene="yckA"
                     /locus_tag="BSU_03370"
                     /old_locus_tag="BSU03370"
                     /function="16.1: Circulate"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 2b: Function from indirect experimental
                     evidences (e.g. phenotypes); PubMedId: 15849754, 16850406,
                     23038252; Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="aminoacid ABC transporter (permease subunit)"
                     /protein_id="NP_388219.1"
                     /db_xref="EnsemblGenomes-Gn:BSU03370"
                     /db_xref="EnsemblGenomes-Tr:CAB12131"
                     /db_xref="GOA:P42399"
                     /db_xref="InterPro:IPR000515"
                     /db_xref="InterPro:IPR010065"
                     /db_xref="InterPro:IPR035906"
                     /db_xref="SubtiList:BG11177"
                     /db_xref="UniProtKB/Swiss-Prot:P42399"
                     /translation="MINSIQWEYIFNTKLAIESFPYVIKGIGYTLLISFVSMFAGTVI
                     GLFISLARMSKLALLRWPAKLYISFMRGVPILVILFILYFGFPYIGIEFSAVTAALIG
                     FSLNSAAYIAEINRSAISSVEKGQWEAASSLGLSYWQTMRGIILPQSIRIALPPLANV
                     LLDLIKASSLAAMITVPELLQHAKIIGGREFDYMTMYILTALIYWAICSIAAVFQNIL
                     EKKYAHYV*"
                     /label="yckA CDS"
     gene            complement(348872..349552)
                     /gene="yckA"
                     /locus_tag="BSU_03370"
                     /old_locus_tag="BSU03370"
                     /label="yckA gene"
     downshifts      complement(348878)
                     /Source="Nicolas_upshifts"
                     /id="D148"
                     /incds=0
                     /nref=101
                     /ntot=231
                     /MaxReadThrough="0.41655"
                     /MaxDrop="6.18136"
                     /score="40.1548023"
                     /energy="-12.6"
                     /TU="NA"
                     /idTUdmin="U256"
                     /TUdmin="-9"
                     /isTUend="TRUE"
                     /label="downshifts"
     CDS             complement(349562..350425)
                     /gene="yckB"
                     /locus_tag="BSU_03380"
                     /old_locus_tag="BSU03380"
                     /function="16.1: Circulate"
                     /experiment="publication(s) with functional evidences,
                     PMID:23038252"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 23038252; Product type t:
                     transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter (binding lipoprotein
                     subunit)"
                     /protein_id="NP_388220.1"
                     /db_xref="EnsemblGenomes-Gn:BSU03380"
                     /db_xref="EnsemblGenomes-Tr:CAB12132"
                     /db_xref="GOA:P42400"
                     /db_xref="InterPro:IPR001638"
                     /db_xref="InterPro:IPR018313"
                     /db_xref="PDB:2IEE"
                     /db_xref="SubtiList:BG11178"
                     /db_xref="UniProtKB/Swiss-Prot:P42400"
                     /translation="MKSFMHSKAVIFSFTMAFFLILAACSGKNEADSKDTGWEQIKDK
                     GKIVVATSGTLYPTSYHDTDSGSDKLTGYEVEVVREAAKRLGLKVEFKEMGIDGMLTA
                     VNSGQVDAAANDIDVTKDREEKFAFSTPYKYSYGTAIVRKDDLSGIKTLKDLKGKKAA
                     GAATTVYMEVARKYGAKEVIYDNATNEQYLKDVANGRTDVILNDYYLQTLALAAFPDL
                     NITIHPDIKYMPNKQALVMKKSNAALQKKMNEALKEMSKDGSLTKLSKQFFNKADVSK
                     KIDADVQDVDL*"
                     /label="yckB CDS"
     gene            complement(349562..350425)
                     /gene="yckB"
                     /locus_tag="BSU_03380"
                     /old_locus_tag="BSU03380"
                     /label="yckB gene"
     promotor_-10    complement(350447..350466)
                     /Source="Nicolas_upshift_promotors"
                     /id="U256"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.791208791208791"
                     /psig="0.983016983016983"
                     /xcortree=1804
                     /SigmaFactorBS="caattcgaactttttgaaaacgcgatcaacaTATTGCAAccc
                     cttatgttcaaTGCTATCTTTTTAGTTGATTaacagattgggggaactataggtgaaa
                     t"
                     /listShort="yckB, yckA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(350459)
                     /Source="Nicolas_upshifts"
                     /id="U256"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.791208791208791"
                     /psig="0.983016983016983"
                     /xcortree=1804
                     /SigmaFactorBS="caattcgaactttttgaaaacgcgatcaacaTATTGCAAccc
                     cttatgttcaaTGCTATCTTTTTAGTTGATTaacagattgggggaactataggtgaaa
                     t"
                     /listShort="yckB, yckA"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     S_feature       complement(350461..353295)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_368894_371728_c"
                     /HighExp="GM 150, T-4.40H, G/S, Pyr, S2, C30, T-5.40H,
                     C90, T-3.40H, T0.30H"
                     /AntisenseName="bglC"
                     /AntisenseCor="-0.37749573319969598"
                     /AntisenseRegPval="-9.8000000000000007"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="Sig-, SigA, Sig-"
                     /TUshortPSig="0.248, 0.994, 0.0879"
                     /TUlongSig="SigD"
                     /TUlongPSig=1
                     /label="S122"
     promotor_-35    complement(350481..350488)
                     /Source="Nicolas_upshift_promotors"
                     /id="U256"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.791208791208791"
                     /psig="0.983016983016983"
                     /xcortree=1804
                     /SigmaFactorBS="caattcgaactttttgaaaacgcgatcaacaTATTGCAAccc
                     cttatgttcaaTGCTATCTTTTTAGTTGATTaacagattgggggaactataggtgaaa
                     t"
                     /listShort="yckB, yckA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-35    350498..350504
                     /Source="Nicolas_upshift_promotors"
                     /id="U257"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp="0.996003996003996"
                     /psig="0.996003996003996"
                     /xcortree=154
                     /SigmaFactorBS="acataaggggttgcaatatgttgatcgCGTTTTCaaaaagtt
                     cgaattGTGTATACAAAAAGCATGGgtgggtgtttaaaagcgtctatgaagggaagag
                     g"
                     /listShort="S123, yckC"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    350519..350537
                     /Source="Nicolas_upshift_promotors"
                     /id="U257"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp="0.996003996003996"
                     /psig="0.996003996003996"
                     /xcortree=154
                     /SigmaFactorBS="acataaggggttgcaatatgttgatcgCGTTTTCaaaaagtt
                     cgaattGTGTATACAAAAAGCATGGgtgggtgtttaaaagcgtctatgaagggaagag
                     g"
                     /listShort="S123, yckC"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     S_feature       350531..350753
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_368964_369186"
                     /HighExp="Etha, Salt, B60, Sw, B36, Gly, Heat, S6, Cold,
                     S7"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="0.99896700000000005"
                     /TUshortSig="SigB"
                     /TUshortPSig="0.996"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S123"
     upshifts        350531
                     /Source="Nicolas_upshifts"
                     /id="U257"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp="0.996003996003996"
                     /psig="0.996003996003996"
                     /xcortree=154
                     /SigmaFactorBS="acataaggggttgcaatatgttgatcgCGTTTTCaaaaagtt
                     cgaattGTGTATACAAAAAGCATGGgtgggtgtttaaaagcgtctatgaagggaagag
                     g"
                     /listShort="S123, yckC"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             350587..350784
                     /locus_tag="BSU_03385"
                     /old_locus_tag="BSU03385"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 5: Unknown function"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_009513942.1"
                     /translation="MSKDECQTYQGNACESEGCSRPVTHLCQYRKKWSRGMKPIFRIN
                     LSLADAPKAYDIFDEKENGNI*"
                     /label="hypothetical protein CDS"
     gene            350587..350784
                     /locus_tag="BSU_03385"
                     /old_locus_tag="BSU03385"
                     /label="gene"
     promotor_-35    350722..350727
                     /Source="Nicolas_upshift_promotors"
                     /id="U258"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.876123876123876"
                     /psig="0.876123876123876"
                     /xcortree=779
                     /SigmaFactorBS="atgaaaccgatcttcagaataaatttaAGTCTTgctgatgcc
                     cctaagGCATATGATATATTCGATGagaaagaaaatggaaacatttaaaccataatgg
                     g"
                     /listShort="yckC"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    350743..350761
                     /Source="Nicolas_upshift_promotors"
                     /id="U258"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.876123876123876"
                     /psig="0.876123876123876"
                     /xcortree=779
                     /SigmaFactorBS="atgaaaccgatcttcagaataaatttaAGTCTTgctgatgcc
                     cctaagGCATATGATATATTCGATGagaaagaaaatggaaacatttaaaccataatgg
                     g"
                     /listShort="yckC"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        350755
                     /Source="Nicolas_upshifts"
                     /id="U258"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.876123876123876"
                     /psig="0.876123876123876"
                     /xcortree=779
                     /SigmaFactorBS="atgaaaccgatcttcagaataaatttaAGTCTTgctgatgcc
                     cctaagGCATATGATATATTCGATGagaaagaaaatggaaacatttaaaccataatgg
                     g"
                     /listShort="yckC"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             350803..351258
                     /gene="yckC"
                     /locus_tag="BSU_03390"
                     /old_locus_tag="BSU03390"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms; PubMedId: 15849754, 16850406; Product type
                     m:membrane component"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved integral membrane protein of unknown
                     function"
                     /protein_id="NP_388221.1"
                     /db_xref="EnsemblGenomes-Gn:BSU03390"
                     /db_xref="EnsemblGenomes-Tr:CAB12133"
                     /db_xref="GOA:P42401"
                     /db_xref="InterPro:IPR010432"
                     /db_xref="SubtiList:BG11179"
                     /db_xref="UniProtKB/Swiss-Prot:P42401"
                     /translation="MNIYKPAGFWIRLGAALLDYIIVSVPLLLIYWLITGKDPNDSMF
                     ISLVVLLYSILLPMFWRGYLIGKRICGIRIVKKDGSQVSLLTMFLRVIVAGLVYCITF
                     GLGLIASLILIAVREDKRTLHDLIAGTYVTYATPGEEELNADEEIRKSE*"
                     /label="yckC CDS"
     gene            350803..351258
                     /gene="yckC"
                     /locus_tag="BSU_03390"
                     /old_locus_tag="BSU03390"
                     /label="yckC gene"
     downshifts      351233
                     /Source="Nicolas_upshifts"
                     /id="D149"
                     /incds=0
                     /nref=40
                     /ntot=193
                     /MaxReadThrough="1.14817"
                     /MaxDrop="5.48303"
                     /score="23.1539807"
                     /energy="-9.8"
                     /TU="NA"
                     /idTUdmin="U257"
                     /TUdmin="-2"
                     /isTUend="TRUE"
                     /label="downshifts"
     promotor_-35    351281..351287
                     /Source="Nicolas_upshift_promotors"
                     /id="U259"
                     /multdbtbs="SigG"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp=1
                     /psig=1
                     /xcortree=899
                     /SigmaFactorBS="cgaagagattagaaagagcgaataatggttcgctctttttat
                     ttttaTGCATAAaaaatacaaggcaGCAAAACATATGaaaaataggattggaggaata
                     a"
                     /listShort="yckD"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     upshifts        351294
                     /Source="Nicolas_upshifts"
                     /id="U259"
                     /multdbtbs="SigG"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp=1
                     /psig=1
                     /xcortree=899
                     /SigmaFactorBS="cgaagagattagaaagagcgaataatggttcgctctttttat
                     ttttaTGCATAAaaaatacaaggcaGCAAAACATATGaaaaataggattggaggaata
                     a"
                     /listShort="yckD"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-10    351301..351312
                     /Source="Nicolas_upshift_promotors"
                     /id="U259"
                     /multdbtbs="SigG"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp=1
                     /psig=1
                     /xcortree=899
                     /SigmaFactorBS="cgaagagattagaaagagcgaataatggttcgctctttttat
                     ttttaTGCATAAaaaatacaaggcaGCAAAACATATGaaaaataggattggaggaata
                     a"
                     /listShort="yckD"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     CDS             351340..351672
                     /gene="yckD"
                     /locus_tag="BSU_03400"
                     /old_locus_tag="BSU03400"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; Product type f: factor"
                     /codon_start=1
                     /transl_table=11
                     /product="putative exported protein"
                     /protein_id="NP_388222.1"
                     /db_xref="EnsemblGenomes-Gn:BSU03400"
                     /db_xref="EnsemblGenomes-Tr:CAB12134"
                     /db_xref="InterPro:IPR024485"
                     /db_xref="SubtiList:BG11180"
                     /db_xref="UniProtKB/Swiss-Prot:P42402"
                     /translation="MKRITINIITMFIAAAVISLTGTAEAAEKQQQSPANVTLTDQQK
                     KEIEQLEAEILKKRKDVISKYVQYGILPKERGEHIKNHLDKHFEMMKQNGFVPKHHPH
                     PHKFEKRH*"
                     /label="yckD CDS"
     gene            351340..351672
                     /gene="yckD"
                     /locus_tag="BSU_03400"
                     /old_locus_tag="BSU03400"
                     /label="yckD gene"
     downshifts      351653
                     /Source="Nicolas_upshifts"
                     /id="D150"
                     /incds=0
                     /nref=20
                     /ntot=44
                     /MaxReadThrough="2.48743"
                     /MaxDrop="4.3022"
                     /score="-1.40416926"
                     /energy="-11.8"
                     /TU="NA"
                     /idTUdmin="U259"
                     /TUdmin=0
                     /isTUend="TRUE"
                     /label="downshifts"
     promotor_-35    351758..351765
                     /Source="Nicolas_upshift_promotors"
                     /id="U260"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.936063936063936"
                     /psig="0.953046953046953"
                     /xcortree=1581
                     /SigmaFactorBS="caatattagctgagctgttccgcgactaacatcGAGTTGATa
                     tgaaacgcgtttcaTAGCCTATGATAGGTTTATCaaataattcaggagtgataaacac
                     t"
                     /listShort="bglC"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    351781..351800
                     /Source="Nicolas_upshift_promotors"
                     /id="U260"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.936063936063936"
                     /psig="0.953046953046953"
                     /xcortree=1581
                     /SigmaFactorBS="caatattagctgagctgttccgcgactaacatcGAGTTGATa
                     tgaaacgcgtttcaTAGCCTATGATAGGTTTATCaaataattcaggagtgataaacac
                     t"
                     /listShort="bglC"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        351785
                     /Source="Nicolas_upshifts"
                     /id="U260"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.936063936063936"
                     /psig="0.953046953046953"
                     /xcortree=1581
                     /SigmaFactorBS="caatattagctgagctgttccgcgactaacatcGAGTTGATa
                     tgaaacgcgtttcaTAGCCTATGATAGGTTTATCaaataattcaggagtgataaacac
                     t"
                     /listShort="bglC"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             351826..353259
                     /gene="bglC"
                     /locus_tag="BSU_03410"
                     /old_locus_tag="BSU03410"
                     /EC_number="3.2.1.86"
                     /function="16.11: Scavenge (Catabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:14652714, 15139916, 18069788"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 14652714, 15139916,
                     18069788; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="aryl-phospho-beta-d-glucosidase"
                     /protein_id="NP_388223.1"
                     /db_xref="EnsemblGenomes-Gn:BSU03410"
                     /db_xref="EnsemblGenomes-Tr:CAB12135"
                     /db_xref="GOA:P42403"
                     /db_xref="InterPro:IPR001360"
                     /db_xref="InterPro:IPR017853"
                     /db_xref="InterPro:IPR018120"
                     /db_xref="InterPro:IPR033132"
                     /db_xref="SubtiList:BG11181"
                     /db_xref="UniProtKB/Swiss-Prot:P42403"
                     /translation="MIHQHPESFPKHFLWGSASAAYQIEGAWNEDGKGPSVWDVFTKI
                     PGKTFKGTNGEIAVDHYHRFKEDVALMAEMGLKAYRFSVSWPRVFPKGKGEINEAGLA
                     FYDSLIDELLSHHIEPVLTLYHWDLPQALMDEYGGFESRNIIEDFNHYCITLYKRFGD
                     RVKYWVTLNEQNYNFNHGFITAMHPPGVKDRKRFYEANHIAFLANAKAIESFREYVPE
                     GKIGPSFAYSPAYPLSSHPEDILAFENAEEFTNNWWLDMYCWGTYPQIPFRCLEKQGW
                     APTIEAGDMDLLAKGKPDFVGVNYYQTITYERNPLDGVSEGKMNTTGQKGTNQETGIP
                     GVFKTKKNPHLTTSNWDWTIDPIGLRIGLRRITSRYQLPVFITENGLGEFDKVEDGTV
                     QDDYRIDYLRSHLEQCRQAISDGVDLIGYCSWSFTDLLSWLNGYQKRYGFVYVNRDEE
                     STSDLKRLKKKSFYWYQDVIKTNGESL*"
                     /label="bglC CDS"
     gene            351826..353259
                     /gene="bglC"
                     /locus_tag="BSU_03410"
                     /old_locus_tag="BSU03410"
                     /label="bglC gene"
     downshifts      353237
                     /Source="Nicolas_upshifts"
                     /id="D151"
                     /incds=0
                     /nref=12
                     /ntot=61
                     /MaxReadThrough="1.51167"
                     /MaxDrop="4.6748"
                     /score="18.0928088"
                     /energy="-15.9"
                     /TU="NA"
                     /idTUdmin="U260"
                     /TUdmin=0
                     /isTUend="TRUE"
                     /label="downshifts"
     CDS             complement(353296..353694)
                     /gene="nin"
                     /locus_tag="BSU_03420"
                     /old_locus_tag="BSU03420"
                     /function="16.3: Control"
                     /function="16.11: Scavenge (Catabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:11359569, 11814663, 22720735"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 11359569, 11814663,
                     22720735; Product type r: regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="inhibitor of the DNA degrading activity of NucA
                     (competence)"
                     /protein_id="NP_388224.1"
                     /db_xref="EnsemblGenomes-Gn:BSU03420"
                     /db_xref="EnsemblGenomes-Tr:CAB12136"
                     /db_xref="GOA:P12669"
                     /db_xref="InterPro:IPR020354"
                     /db_xref="PDB:4MQD"
                     /db_xref="SubtiList:BG10839"
                     /db_xref="UniProtKB/Swiss-Prot:P12669"
                     /translation="MIKSWKPQELSISYHQFTVFQKDSTPPVMDWTDEAIEKGYAAAD
                     GAISFEAQRNTKAFILFRLNSSETVNSYEKKVTVPFHVTENGIHIESIMSKRLSFDLP
                     KGDYQLTCWTVPAEMSDLHADTYIIDAVSV*"
                     /label="nin CDS"
     gene            complement(353296..353694)
                     /gene="nin"
                     /locus_tag="BSU_03420"
                     /old_locus_tag="BSU03420"
                     /label="nin gene"
     promotor_no_box complement(353691..353791)
                     /Source="Nicolas_upshift_promotors"
                     /id="U261"
                     /multdbtbs="-"
                     /comp="M18"
                     /sig="Sig-"
                     /pcomp="0.234765234765235"
                     /psig="0.247752247752248"
                     /xcortree=1715
                     /SigmaFactorBS="caggctcttgggtcgggcatcggcttaccgattacccagacg
                     gcacaaaggttttattcacaattcagtaaacagtacatagaggaggaacagcacattg
                     a"
                     /listShort="nin, S122"
                     /GFF_Attribute="listLong"
                     /label="promotor_no_box"
     CDS             complement(353721..354170)
                     /gene="nucA"
                     /locus_tag="BSU_03430"
                     /old_locus_tag="BSU03430"
                     /function="16.11: Scavenge (Catabolism)"
                     /function="16.8: Protect"
                     /function="16.6: Maintain"
                     /experiment="publication(s) with functional evidences,
                     PMID:2841296, 7746143, 11359569, 11814663"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 2841296, 7746143,
                     11359569, 11814663; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="endonuclease"
                     /protein_id="NP_388225.3"
                     /db_xref="EnsemblGenomes-Gn:BSU03430"
                     /db_xref="EnsemblGenomes-Tr:CAB12137"
                     /db_xref="GOA:P12667"
                     /db_xref="InterPro:IPR029476"
                     /db_xref="SubtiList:BG10838"
                     /db_xref="UniProtKB/Swiss-Prot:P12667"
                     /translation="MNITTDIIKTILLVIVIIAAAAVGLIKGDFFSADQKTSQTKEYD
                     ETMAFPSDRYPETAKHIKDAINEGHSEVCTIDRDGAEERREQSLKDVPSKKGYDRDEW
                     PMAMCKEGGEGASVEYISPADNRGAGSWVGHRLTDYPDGTKVLFTIQ*"
                     /label="nucA CDS"
     gene            complement(353721..354170)
                     /gene="nucA"
                     /locus_tag="BSU_03430"
                     /old_locus_tag="BSU03430"
                     /label="nucA gene"
     upshifts        complement(353731)
                     /Source="Nicolas_upshifts"
                     /id="U261"
                     /multdbtbs="-"
                     /comp="M18"
                     /sig="Sig-"
                     /pcomp="0.234765234765235"
                     /psig="0.247752247752248"
                     /xcortree=1715
                     /SigmaFactorBS="caggctcttgggtcgggcatcggcttaccgattacccagacg
                     gcacaaaggttttattcacaattcagtaaacagtacatagaggaggaacagcacattg
                     a"
                     /listShort="nin, S122"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-10    complement(354185..354204)
                     /Source="Nicolas_upshift_promotors"
                     /id="U262"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.532467532467532"
                     /psig="0.994005994005994"
                     /xcortree=2957
                     /SigmaFactorBS="taaactgatcgtaaaacataaaatttaaACCTTTACaccaaa
                     tgctttcTGGATTACTCTTGTGTCAGTtttaaaagcgggaggtgaacatcacgacgga
                     c"
                     /listShort="nucA, nin, S122, yckB, yckA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(354193)
                     /Source="Nicolas_upshifts"
                     /id="U262"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.532467532467532"
                     /psig="0.994005994005994"
                     /xcortree=2957
                     /SigmaFactorBS="taaactgatcgtaaaacataaaatttaaACCTTTACaccaaa
                     tgctttcTGGATTACTCTTGTGTCAGTtttaaaagcgggaggtgaacatcacgacgga
                     c"
                     /listShort="nucA, nin, S122, yckB, yckA"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     S_feature       complement(354195..354337)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_372628_372770_c"
                     /HighExp="C30, Diami, M40t45, Cold, Lbstat, T0.30H, M0t90,
                     dia15, C90, Lbtran"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="Sig-, SigD"
                     /TUshortPSig="0.0879, 1"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S124"
     promotor_-35    complement(354218..354225)
                     /Source="Nicolas_upshift_promotors"
                     /id="U262"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.532467532467532"
                     /psig="0.994005994005994"
                     /xcortree=2957
                     /SigmaFactorBS="taaactgatcgtaaaacataaaatttaaACCTTTACaccaaa
                     tgctttcTGGATTACTCTTGTGTCAGTtttaaaagcgggaggtgaacatcacgacgga
                     c"
                     /listShort="nucA, nin, S122, yckB, yckA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             complement(354338..356059)
                     /gene="tlpC"
                     /locus_tag="BSU_03440"
                     /old_locus_tag="BSU03440"
                     /function="16.12: Sense"
                     /function="16.3: Control"
                     /experiment="publication(s) with functional evidences,
                     PMID:7704255, 7921238, 15187186, 27899502"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 7704255, 7921238,
                     15187186, 27899502; Product type rc: receptor"
                     /codon_start=1
                     /transl_table=11
                     /product="methyl-accepting chemotaxis protein (plant
                     colonization)"
                     /protein_id="NP_388226.2"
                     /db_xref="EnsemblGenomes-Gn:BSU03440"
                     /db_xref="EnsemblGenomes-Tr:CAB12138"
                     /db_xref="GOA:P39209"
                     /db_xref="InterPro:IPR003660"
                     /db_xref="InterPro:IPR004089"
                     /db_xref="InterPro:IPR004090"
                     /db_xref="InterPro:IPR029151"
                     /db_xref="InterPro:IPR033463"
                     /db_xref="SubtiList:BG10790"
                     /db_xref="UniProtKB/Swiss-Prot:P39209"
                     /translation="MLIKRFKMKLGTKILCLVFVVILLFSASVGTVMLKEITESMKQM
                     ATEKAKGDLALSSTYIDDVMSGDWQVKNNKLYKGQTQINGNEDIVDLLGEKTGDTITI
                     FQGDTRVATNVMKNGERAVGTQASSEVIAAVLKKGKRFYGQADVAGSSYQTAYMPLKD
                     QNGNIIGMLYTGANQSILASLTQSLFTQFAIVLVIVIMVSVILVLVFTRKINKRLNAL
                     KSAFESAGNGDMTIEVSDKTGDELSELSVYYNKMRMKLNDTIQTVQQSALQLASASQQ
                     LSAGAEETNQASEKITEAVQQIANGAQDQITRIENSESSLKQASADIRDISANTAAIA
                     DKGQLAQSKADIGQKEIANVQAQMDAIHQSIQKSGEIIHQLDGRSKQIEQILSVITQI
                     ADQTNLLALNAAIEAARAGEQGKGFAVVADEVRKLAEESQQSAGQISKLIIEIQKDMN
                     RSARSVEHVKTEAAEGVTMIQRTRDAFKEIAAATGEISAEISDLSASVTNISASAHQI
                     NDSFAANTADIKESTKNTRQAAALTEEQFAAMEEITAASETLSQLAEELTGIISQFKM
                     INQAENG*"
                     /label="tlpC CDS"
     gene            complement(354338..356059)
                     /gene="tlpC"
                     /locus_tag="BSU_03440"
                     /old_locus_tag="BSU03440"
                     /label="tlpC gene"
     promotor_-35    354350..354357
                     /Source="Nicolas_upshift_promotors"
                     /id="U263"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.955044955044955"
                     /psig="0.996003996003996"
                     /xcortree=2959
                     /SigmaFactorBS="ttgccaatttacaataatgatagtaagtcatcagccgttttc
                     GGCTTGATtaatcattttaaatTGGCTTATGATACCGGTAAGctcctcagctaattga
                     g"
                     /listShort="S125, hxlR"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     S_feature       354368..357511
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_372801_375944"
                     /HighExp="T1.0H, T1.30H, T0.30H, T2.0H, T2.30H, T3.0H,
                     T3.30H, T4.0H, T0.0H, T-0.40H"
                     /AntisenseName="tlpC"
                     /AntisenseCor="-0.40398083053643302"
                     /AntisenseRegPval="-11.3"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.996"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S125"
     upshifts        354368
                     /Source="Nicolas_upshifts"
                     /id="U263"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.955044955044955"
                     /psig="0.996003996003996"
                     /xcortree=2959
                     /SigmaFactorBS="ttgccaatttacaataatgatagtaagtcatcagccgttttc
                     GGCTTGATtaatcattttaaatTGGCTTATGATACCGGTAAGctcctcagctaattga
                     g"
                     /listShort="S125, hxlR"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-10    354372..354391
                     /Source="Nicolas_upshift_promotors"
                     /id="U263"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.955044955044955"
                     /psig="0.996003996003996"
                     /xcortree=2959
                     /SigmaFactorBS="ttgccaatttacaataatgatagtaagtcatcagccgttttc
                     GGCTTGATtaatcattttaaatTGGCTTATGATACCGGTAAGctcctcagctaattga
                     g"
                     /listShort="S125, hxlR"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     promotor_no_box complement(354373..354473)
                     /Source="Nicolas_upshift_promotors"
                     /id="U264"
                     /multdbtbs="-"
                     /comp="M13"
                     /sig="Sig-"
                     /pcomp="0.452547452547453"
                     /psig="0.0879120879120879"
                     /xcortree=2190
                     /SigmaFactorBS="ggctgcattaacagaggagcaatttgctgcaatggaggagat
                     taccgcagcttctgaaacactttctcaattagctgaggagcttaccggtatcataagc
                     c"
                     /listShort="S124, nucA, nin, S122"
                     /listLong="yckB, yckA"
                     /label="promotor_no_box"
     upshifts        complement(354413)
                     /Source="Nicolas_upshifts"
                     /id="U264"
                     /multdbtbs="-"
                     /comp="M13"
                     /sig="Sig-"
                     /pcomp="0.452547452547453"
                     /psig="0.0879120879120879"
                     /xcortree=2190
                     /SigmaFactorBS="ggctgcattaacagaggagcaatttgctgcaatggaggagat
                     taccgcagcttctgaaacactttctcaattagctgaggagcttaccggtatcataagc
                     c"
                     /listShort="S124, nucA, nin, S122"
                     /listLong="yckB, yckA"
                     /label="upshifts"
     promotor_-10    complement(356083..356101)
                     /Source="Nicolas_upshift_promotors"
                     /id="U265"
                     /multdbtbs="SigD"
                     /comp="M10"
                     /sig="SigD"
                     /pcomp=1
                     /psig=1
                     /xcortree=2796
                     /SigmaFactorBS="cggcctgaagatcaggccggttttattttttctaaaATAAAA
                     CTttaaacccaaaaaCCCGATAAGTAATATGACCtgcaaatcgtaaagggaggaatta
                     t"
                     /listShort="tlpC, S124, nucA, nin"
                     /listLong="S122"
                     /label="promotor_-10"
     upshifts        complement(356098)
                     /Source="Nicolas_upshifts"
                     /id="U265"
                     /multdbtbs="SigD"
                     /comp="M10"
                     /sig="SigD"
                     /pcomp=1
                     /psig=1
                     /xcortree=2796
                     /SigmaFactorBS="cggcctgaagatcaggccggttttattttttctaaaATAAAA
                     CTttaaacccaaaaaCCCGATAAGTAATATGACCtgcaaatcgtaaagggaggaatta
                     t"
                     /listShort="tlpC, S124, nucA, nin"
                     /listLong="S122"
                     /label="upshifts"
     promotor_-35    complement(356115..356122)
                     /Source="Nicolas_upshift_promotors"
                     /id="U265"
                     /multdbtbs="SigD"
                     /comp="M10"
                     /sig="SigD"
                     /pcomp=1
                     /psig=1
                     /xcortree=2796
                     /SigmaFactorBS="cggcctgaagatcaggccggttttattttttctaaaATAAAA
                     CTttaaacccaaaaaCCCGATAAGTAATATGACCtgcaaatcgtaaagggaggaatta
                     t"
                     /listShort="tlpC, S124, nucA, nin"
                     /listLong="S122"
                     /label="promotor_-35"
     CDS             complement(356170..356727)
                     /gene="hxlB"
                     /locus_tag="BSU_03450"
                     /old_locus_tag="BSU03450"
                     /EC_number="5.3.1.27"
                     /function="16.8: Protect"
                     /function="16.11: Scavenge (Catabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:10572115, 15978081"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 10572115, 15978081;
                     Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="6-phospho-3-hexuloisomerase (PHI)"
                     /protein_id="NP_388227.1"
                     /db_xref="EnsemblGenomes-Gn:BSU03450"
                     /db_xref="EnsemblGenomes-Tr:CAB12139"
                     /db_xref="GOA:P42404"
                     /db_xref="InterPro:IPR001347"
                     /db_xref="InterPro:IPR017552"
                     /db_xref="PDB:1M3S"
                     /db_xref="PDB:1VIV"
                     /db_xref="SubtiList:BG11182"
                     /db_xref="UniProtKB/Swiss-Prot:P42404"
                     /translation="MKTTEYVAEILNELHNSAAYISNEEADQLADHILSSHQIFTAGA
                     GRSGLMAKSFAMRLMHMGFNAHIVGEILTPPLAEGDLVIIGSGSGETKSLIHTAAKAK
                     SLHGIVAALTINPESSIGKQADLIIRMPGSPKDQSNGSYKTIQPMGSLFEQTLLLFYD
                     AVILKLMEKKGLDSETMFTHHANLE*"
                     /label="hxlB CDS"
     gene            complement(356170..356727)
                     /gene="hxlB"
                     /locus_tag="BSU_03450"
                     /old_locus_tag="BSU03450"
                     /label="hxlB gene"
     downshifts      complement(356173)
                     /Source="Nicolas_upshifts"
                     /id="D152"
                     /incds=0
                     /nref=51
                     /ntot=130
                     /MaxReadThrough="1.98332"
                     /MaxDrop="6.56052"
                     /score="42.3682356"
                     /energy="-15.4"
                     /TU="NA"
                     /idTUdmin="U266"
                     /TUdmin=0
                     /isTUend="TRUE"
                     /label="downshifts"
     CDS             complement(356733..357365)
                     /gene="hxlA"
                     /locus_tag="BSU_03460"
                     /old_locus_tag="BSU03460"
                     /EC_number="4.1.2.43"
                     /function="16.8: Protect"
                     /function="16.11: Scavenge (Catabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:10572115, 15978081"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 10572115, 15978081;
                     Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="3-hexulose-6-phosphate synthase (HPS)"
                     /protein_id="NP_388228.1"
                     /db_xref="EnsemblGenomes-Gn:BSU03460"
                     /db_xref="EnsemblGenomes-Tr:CAB12140"
                     /db_xref="GOA:P42405"
                     /db_xref="InterPro:IPR001754"
                     /db_xref="InterPro:IPR011060"
                     /db_xref="InterPro:IPR013785"
                     /db_xref="InterPro:IPR017553"
                     /db_xref="SubtiList:BG11183"
                     /db_xref="UniProtKB/Swiss-Prot:P42405"
                     /translation="MELQLALDLVNIPEAIELVKEVEQYIDVVEIGTPVVINEGLRAV
                     KEIKEAFPQLKVLADLKIMDAGGYEIMKASEAGADIITVLGATDDATIKGAVEEAKKQ
                     KKKILVDMINVKDIESRAKEIDALGVDYICVHTGYDLQAEGKNSFEELTTIKNTVKNA
                     KTAIAGGIKLDTLPEVIQQKPDLVIVGGGITSAADKAETASKMKQLIVQG*"
                     /label="hxlA CDS"
     gene            complement(356733..357365)
                     /gene="hxlA"
                     /locus_tag="BSU_03460"
                     /old_locus_tag="BSU03460"
                     /label="hxlA gene"
     promotor_-10    complement(357391..357410)
                     /Source="Nicolas_upshift_promotors"
                     /id="U266"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.658341658341658"
                     /psig="0.987012987012987"
                     /xcortree=1517
                     /SigmaFactorBS="agtatcctccaagtaacttgttgacttcaaagtgcctaCTTC
                     tcaacaaaagaaggAACCTATAGAATGAACAATAattcgaaaaagggagtggatcaac
                     a"
                     /listShort="hxlA, hxlB"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(357406)
                     /Source="Nicolas_upshifts"
                     /id="U266"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.658341658341658"
                     /psig="0.987012987012987"
                     /xcortree=1517
                     /SigmaFactorBS="agtatcctccaagtaacttgttgacttcaaagtgcctaCTTC
                     tcaacaaaagaaggAACCTATAGAATGAACAATAattcgaaaaagggagtggatcaac
                     a"
                     /listShort="hxlA, hxlB"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(357425..357428)
                     /Source="Nicolas_upshift_promotors"
                     /id="U266"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.658341658341658"
                     /psig="0.987012987012987"
                     /xcortree=1517
                     /SigmaFactorBS="agtatcctccaagtaacttgttgacttcaaagtgcctaCTTC
                     tcaacaaaagaaggAACCTATAGAATGAACAATAattcgaaaaagggagtggatcaac
                     a"
                     /listShort="hxlA, hxlB"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-35    357489..357492
                     /Source="Nicolas_upshift_promotors"
                     /id="U267"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.536463536463537"
                     /psig=1
                     /xcortree=1957
                     /SigmaFactorBS="acttggaggatactgtgaggagagacaatcagatttCTTTcg
                     cttgattttatgAGTGAGTATAATGAAAAAAGagtctgcaaaaaagtaagtaagtgat
                     g"
                     /listShort="hxlR"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    357507..357526
                     /Source="Nicolas_upshift_promotors"
                     /id="U267"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.536463536463537"
                     /psig=1
                     /xcortree=1957
                     /SigmaFactorBS="acttggaggatactgtgaggagagacaatcagatttCTTTcg
                     cttgattttatgAGTGAGTATAATGAAAAAAGagtctgcaaaaaagtaagtaagtgat
                     g"
                     /listShort="hxlR"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        357513
                     /Source="Nicolas_upshifts"
                     /id="U267"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.536463536463537"
                     /psig=1
                     /xcortree=1957
                     /SigmaFactorBS="acttggaggatactgtgaggagagacaatcagatttCTTTcg
                     cttgattttatgAGTGAGTATAATGAAAAAAGagtctgcaaaaaagtaagtaagtgat
                     g"
                     /listShort="hxlR"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             357599..357961
                     /gene="hxlR"
                     /locus_tag="BSU_03470"
                     /old_locus_tag="BSU03470"
                     /function="16.3: Control"
                     /experiment="publication(s) with functional evidences,
                     PMID:15978081, 26973631"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 15978081, 26973631;
                     Product type r: regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="positive regulator of hxlAB expression
                     (formaldehyde sensing)"
                     /protein_id="NP_388229.2"
                     /db_xref="EnsemblGenomes-Gn:BSU03470"
                     /db_xref="EnsemblGenomes-Tr:CAB12141"
                     /db_xref="GOA:P42406"
                     /db_xref="InterPro:IPR002577"
                     /db_xref="InterPro:IPR036388"
                     /db_xref="InterPro:IPR036390"
                     /db_xref="SubtiList:BG11184"
                     /db_xref="UniProtKB/Swiss-Prot:P42406"
                     /translation="MSRMDDKRFNCEKELTLAVIGGKWKMLILWHLGKEGTKRFNELK
                     TLIPDITQKILVNQLRELEQDMIVHREVYPVVPPKVEYSLTPHGESLMPILEAMYEWG
                     KGYMELIDIDKNVMKESL*"
                     /label="hxlR CDS"
     gene            357599..357961
                     /gene="hxlR"
                     /locus_tag="BSU_03470"
                     /old_locus_tag="BSU03470"
                     /label="hxlR gene"
     downshifts      357945
                     /Source="Nicolas_upshifts"
                     /id="D153"
                     /incds=0
                     /nref=14
                     /ntot=154
                     /MaxReadThrough="3.13609"
                     /MaxDrop="3.66949"
                     /score="20.4643411"
                     /energy="-9.6"
                     /TU="U267"
                     /idTUdmin="U263"
                     /TUdmin="-2"
                     /isTUend="TRUE"
                     /label="downshifts"
     promotor_-35    358208..358211
                     /Source="Nicolas_upshift_promotors"
                     /id="U268"
                     /multdbtbs="SigA"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.658341658341658"
                     /psig="0.994005994005994"
                     /xcortree=3241
                     /SigmaFactorBS="cggcatcccgcatgaaacttttcacccatttttcGGTGataa
                     aaacatttttTTCATTTAAACTGAACGGTAgaaagataaaaaatattgaaaacaatga
                     a"
                     /listShort="S126, srfAA, srfAB, comS, srfAC, srfAD, ycxA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    358226..358245
                     /Source="Nicolas_upshift_promotors"
                     /id="U268"
                     /multdbtbs="SigA"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.658341658341658"
                     /psig="0.994005994005994"
                     /xcortree=3241
                     /SigmaFactorBS="cggcatcccgcatgaaacttttcacccatttttcGGTGataa
                     aaacatttttTTCATTTAAACTGAACGGTAgaaagataaaaaatattgaaaacaatga
                     a"
                     /listShort="S126, srfAA, srfAB, comS, srfAC, srfAD, ycxA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     S_feature       358234..358534
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_376667_376967"
                     /HighExp="HiOs, T-1.10H, T5.0H, T4.0H, T-1.40H, S2,
                     M9-stat, T3.30H, T0.0H, T2.30H"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="0.20585600000000001"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.994"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S126"
     upshifts        358234
                     /Source="Nicolas_upshifts"
                     /id="U268"
                     /multdbtbs="SigA"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.658341658341658"
                     /psig="0.994005994005994"
                     /xcortree=3241
                     /SigmaFactorBS="cggcatcccgcatgaaacttttcacccatttttcGGTGataa
                     aaacatttttTTCATTTAAACTGAACGGTAgaaagataaaaaatattgaaaacaatga
                     a"
                     /listShort="S126, srfAA, srfAB, comS, srfAC, srfAD, ycxA"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             358535..369298
                     /gene="srfAA"
                     /locus_tag="BSU_03480"
                     /old_locus_tag="BSU03480"
                     /function="16.5: Explore"
                     /function="16.8: Protect"
                     /experiment="publication(s) with functional evidences,
                     PMID:15066026, 16166527, 8288534, 8441623, 14762003,
                     16707694, 26284661, 26268540, 14762003"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 15066026, 16166527,
                     8288534, 8441623, 14762003, 16707694, 26284661, 26268540,
                     14762003; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="surfactin synthetase"
                     /protein_id="NP_388230.2"
                     /db_xref="EnsemblGenomes-Gn:BSU03480"
                     /db_xref="EnsemblGenomes-Tr:CAB12142"
                     /db_xref="GOA:P27206"
                     /db_xref="InterPro:IPR000873"
                     /db_xref="InterPro:IPR001242"
                     /db_xref="InterPro:IPR006162"
                     /db_xref="InterPro:IPR009081"
                     /db_xref="InterPro:IPR010060"
                     /db_xref="InterPro:IPR010071"
                     /db_xref="InterPro:IPR013321"
                     /db_xref="InterPro:IPR020806"
                     /db_xref="InterPro:IPR020845"
                     /db_xref="InterPro:IPR025110"
                     /db_xref="InterPro:IPR036736"
                     /db_xref="SubtiList:BG10168"
                     /db_xref="UniProtKB/Swiss-Prot:P27206"
                     /translation="MEITFYPLTDAQKRIWYTEKFYPHTSISNLAGIGKLVSADAIDY
                     VLVEQAIQEFIRRNDAMRLRLRLDENGEPVQYISEYRPVDIKHTDTTEDPNAIEFISQ
                     WSREETKKPLPLYDCDLFRFSLFTIKENEVWFYANVHHVISDGISMNILGNAIMHIYL
                     ELASGSETKEGISHSFIDHVLSEQEYAQSKRFEKDKAFWNKQFESVPELVSLKRNASA
                     GGSLDAERFSKDVPEALHQQILSFCEANKVSVLSVFQSLLAAYLYRVSGQNDVVTGTF
                     MGNRTNAKEKQMLGMFVSTVPLRTNIDGGQAFSEFVKDRMKDLMKTLRHQKYPYNLLI
                     NDLRETKSSLTKLFTVSLEYQVMQWQKEEDLAFLTEPIFSGSGLNDVSIHVKDRWDTG
                     KLTIDFDYRTDLFSREEINMICERMITMLENALTHPEHTIDELTLISDAEKEKLLARA
                     GGKSVSYRKDMTIPELFQEKAELLSDHPAVVFEDRTLSYRTLHEQSARIANVLKQKGV
                     GPDSPVAVLIERSERMITAIMGILKAGGAYVPIDPGFPAERIQYILEDCGADFILTES
                     KVAAPEADAELIDLDQAIEEGAEESLNADVNARNLAYIIYTSGTTGRPKGVMIEHRQV
                     HHLVESLQQTIYQSGSQTLRMALLAPFHFDASVKQIFASLLLGQTLYIVPKKTVTNGA
                     ALTAYYRKNSIEATDGTPAHLQMLAAAGDFEGLKLKHMLIGGEGLSSVVADKLLKLFK
                     EAGTAPRLTNVYGPTETCVDASVHPVIPENAVQSAYVPIGKALGNNRLYILDQKGRLQ
                     PEGVAGELYIAGDGVGRGYLHLPELTEEKFLQDPFVPGDRMYRTGDVVRWLPDGTIEY
                     LGREDDQVKVRGYRIELGEIEAVIQQAPDVAKAVVLARPDEQGNLEVCAYVVQKPGSE
                     FAPAGLREHAARQLPDYMVPAYFTEVTEIPLTPSGKVDRRKLFALEVKAVSGTAYTAP
                     RNETEKAIAAIWQDVLNVEKAGIFDNFFETGGHSLKAMTLLTKIHKETGIEIPLQFLF
                     EHPTITALAEEADHRESKAFAVIEPAEKQEHYPLSLAQQRTYIVSQFEDAGVGYNMPA
                     AAILEGPLDIQKLERAFQGLIRRHESLRTSFVLENSTPRQKIHDSVDFNIEMIERGGR
                     SDEAIMASFVRTFDLAKAPLFRIGLLGLEENRHMLLFDMHHLISDGVSIGIMLEELAR
                     IYKGEQLPDLRLQYKDYAVWQSRQAAEGYKKDQAYWKEVFAGELPVLQLLSDYPRPPV
                     QSFEGDRVSIKLDAGVKDRLNRLAEQNGATLYMVMLSAYYTLLSKYTGQDDIIVGTPS
                     AGRNHSDTEGIIGMFVNTLAIRSEVKQNETFTQLISRVRKRVLDAFSHQDYPFEWLVE
                     DLNIPRDVSRHPLFDTMFSLQNATEGIPAVGDLSLSVQETNFKIAKFDLTVQARETDE
                     GIEIDVDYSTKLFKQSTADRLLTHFARLLEDAAADPEKPISEYKLLSEEEAASQIQQF
                     NPGRTPYPKDKTIVQLFEEQAANTPDHTALQYEGESLTYRELNERANRLARGILSLGA
                     GEGRTAAVLCERSMDMIVSILAVLKSGSAYVPIDPEHPIQRMQHFFRDSGAKVLLTQR
                     KLKALAEEAEFKGVIVLADEEESYHADARNLALPLDSAAMANLTYTSGTTGTPKGNIV
                     THANILRTVKETNYLSITEQDTILGLSNYVFDAFMFDMFGSLLNGAKLVLIPKETVLD
                     MARLSRVIERENISILMITTALFHLLVDLNPACLSTLRKIMFGGERASVEHVRKALQT
                     VGKGKLLHMYGPSESTVFATYHPVDELEEHTLSVPIGKPVSNTEVYILDRTGHVQPAG
                     IAGELCVSGEGLVKGYYNRPELTEEKFVPHPFTSGERMYKTGDLARWLPNGDIEFIGR
                     IDHQVKIRGQRIELGEIEHQLQTHDRVQESVVLAVDQGAGDKLLCAYYVGEGDISSQE
                     MREHAAKDLPAYMVPAVFIQMDELPLTGNGKIDRRALPIPDANVSRGVSYVAPRNGTE
                     QKVADIWAQVLQAEQVGAYDHFFDIGGHSLAGMKMLALVHQELGVELSLKDLFQSPTV
                     EGLAQVIASAEKGTAASISPAEKQDTYPVSSPQKRMYVLQQLEDAQTSYNMPAVLRLT
                     GELDVERLNSVMQQLMQRHEALRTTFEIKDGETVQRIWEEAECEIAYFEAPEEETERI
                     VSEFIKPFKIDQLPLFRIGLIKHSDTEHVLLFDMHHIISDGASVGVLIEELSKLYDGE
                     TLEPLRIQYKDYAVWQQQFIQSELYKKQEEHWLKELDGELPVLTLPTDYSRPAVQTFE
                     GDRIAFSLEAGKADALRRLAKETDSTLYMVLLASYSAFLSKISGQDDIIVGSPVAGRS
                     QADVSRVIGMFVNTLALRTYPKGEKTFADYLNEVKETALSAFDAQDYPLEDLIGNVQV
                     QRDTSRNPLFDAVFSMQNANIKDLTMKGIQLEPHPFERKTAKFDLTLTADETDGGLTF
                     VLEYNTALFKQETIERWKQYWMELLDAVTGNPNQPLSSLSLVTETEKQALLEAWKGKA
                     LPVPTDKTVHQLFEETAQRHKDRPAVTYNGQSWTYGELNAKANRLARILMDCGISPDD
                     RVGVLTKPSLEMSAAVLGVLKAGAAFVPIDPDYPDQRIEYILQDSGAKLLLKQEGISV
                     PDSYTGDVILLDGSRTILSLPLDENDEENPETAVTAENLAYMIYTSGTTGQPKGVMVE
                     HHALVNLCFWHHDAFSMTAEDRSAKYAGFGFDASIWEMFPTWTIGAELHVIEEAIRLD
                     IVRLNDYFETNGVTITFLPTQLAEQFMELENTSLRVLLTGGDKLKRAVKKPYTLVNNY
                     GPTENTVVATSAEIHPEEGSLSIGRAIANTRVYILGEGNQVQPEGVAGELCVAGRGLA
                     RGYLNREDETAKRFVADPFVPGERMYRTGDLVKWTGGGIEYIGRIDQQVKVRGYRIEL
                     SEIEVQLAQLSEVQDAAVTAVKDKGGNTAIAAYVTPESADIEALKSALKETLPDYMIP
                     AFWVTLNELPVTANGKVDRKALPEPDIEAGSGEYKAPTTDMEELLAGIWQDVLGMSEV
                     GVTDNFFSLGGDSIKGIQMASRLNQHGWKLEMKDLFQHPTIEELTQYVERAEGKQADQ
                     GPVEGEVILTPIQRWFFEKNFTNKHHWNQSVMLHAKKGFDPERVEKTLQALIEHHDAL
                     RMVYREGQEDVIQYNRGLEAASAQLEVIQIEGQAADYEDRIEREAERLQSSIDLQEGG
                     LLKAGLFQAEDGDHLLLAIHHLVVDGVSWRILLEDFAAVYTQLEQGNEPVLPQKTHSF
                     AEYAERLQDFANSKAFLKEKEYWRQLEEQAVAAKLPKDRESGDQRMKHTKTIEFSLTA
                     EETEQLTTKVHEAYHTEMNDILLTAFGLAMKEWTGQDRVSVHLEGHGREEIIEDLTIS
                     RTVGWFTSMYPMVLDMKHADDLGYQLKQMKEDIRHVPNKGVGYGILRYLTAPEHKEDV
                     AFSIQPDVSFNYLGQFDEMSDAGLFTRSELPSGQSLSPETEKPNALDVVGYIENGKLT
                     MSLAYHSLEFHEKTVQTFSDSFKAHLLRIIEHCLSQDGTELTPSDLGDDDLTLDELDK
                     LMEIF*"
                     /label="srfAA CDS"
     gene            358535..369298
                     /gene="srfAA"
                     /locus_tag="BSU_03480"
                     /old_locus_tag="BSU03480"
                     /label="srfAA gene"
     CDS             369311..380062
                     /gene="srfAB"
                     /locus_tag="BSU_03490"
                     /old_locus_tag="BSU03490"
                     /function="16.5: Explore"
                     /function="16.8: Protect"
                     /experiment="publication(s) with functional evidences,
                     PMID:15066026, 16166527, 16553878, 17227471, 14762003,
                     26284661"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 15066026, 16166527,
                     16553878, 17227471, 14762003, 26284661; Product type e :
                     enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="surfactin synthetase"
                     /protein_id="NP_388231.2"
                     /db_xref="EnsemblGenomes-Gn:BSU03490"
                     /db_xref="EnsemblGenomes-Tr:CAB12143"
                     /db_xref="GOA:Q04747"
                     /db_xref="InterPro:IPR000873"
                     /db_xref="InterPro:IPR001242"
                     /db_xref="InterPro:IPR006162"
                     /db_xref="InterPro:IPR009081"
                     /db_xref="InterPro:IPR010060"
                     /db_xref="InterPro:IPR010071"
                     /db_xref="InterPro:IPR020806"
                     /db_xref="InterPro:IPR020845"
                     /db_xref="InterPro:IPR025110"
                     /db_xref="InterPro:IPR036736"
                     /db_xref="SubtiList:BG10169"
                     /db_xref="UniProtKB/Swiss-Prot:Q04747"
                     /translation="MSKKSIQKVYALTPMQEGMLYHAMLDPHSSSYFTQLELGIHGAF
                     DLEIFEKSVNELIRSYDILRTVFVHQQLQKPRQVVLAERKTKVHYEDISHADENRQKE
                     HIERYKQDVQRQGFNLAKDILFKVAVFRLAADQLYLVWSNHHIMMDGWSMGVLMKSLF
                     QNYEALRAGRTPANGQGKPYSDYIKWLGKQDNEEAESYWSERLAGFEQPSVLPGRLPV
                     KKDEYVNKEYSFTWDETLVARIQQTANLHQVTGPNLFQAVWGIVLSKYNFTDDVIFGT
                     VVSGRPSEINGIETMAGLFINTIPVRVKVERDAAFADIFTAVQQHAVEAERYDYVPLY
                     EIQKRSALDGNLLNHLVAFENYPLDQELENGSMEDRLGFSIKVESAFEQTSFDFNLIV
                     YPGKTWTVKIKYNGAAFDSAFIERTAEHLTRMMEAAVDQPAAFVREYGLVGDEEQRQI
                     VEVFNSTKAELPEGMAVHQVFEEQAKRTPASTAVVYEGTKLTYRELNAAANRLARKLV
                     EHGLQKGETAAIMNDRSVETVVGMLAVLKAGAAYVPLDPALPGDRLRFMAEDSSVRMV
                     LIGNSYTGQAHQLQVPVLTLDIGFEESEAADNLNLPSAPSDLAYIMYTSGSTGKPKGV
                     MIEHKSILRLVKNAGYVPVTEEDRMAQTGAVSFDAGTFEVFGALLNGAALYPVKKETL
                     LDAKQFAAFLREQSITTMWLTSPLFNQLAAKDAGMFGTLRHLIIGGDALVPHIVSKVK
                     QASPSLSLWNGYGPTENTTFSTSFLIDREYGGSIPIGKPIGNSTAYIMDEQQCLQPIG
                     APGELCVGGIGVARGYVNLPELTEKQFLEDPFRPGERIYRTGDLARWLPDGNIEFLGR
                     IDNQVKVRGFRIELGEIETKLNMAEHVTEAAVIIRKNKADENEICAYFTADREVAVSE
                     LRKTLSQSLPDYMVPAHLIQMDSLPLTPNGKINKKELPAPQSEAVQPEYAAPKTESEK
                     KLAEIWEGILGVKAGVTDNFFMIGGHSLKAMMMTAKIQEHFHKEVPIKVLFEKPTIQE
                     LALYLEENESKEEQTFEPIRQASYQQHYPVSPAQRRMYILNQLGQANTSYNVPAVLLL
                     EGEVDKDRLENAIQQLINRHEILRTSFDMIDGEVVQTVHKNISFQLEAAKGREEDAEE
                     IIKAFVQPFELNRAPLVRSKLVQLEEKRHLLLIDMHHIITDGSSTGILIGDLAKIYQG
                     ADLELPQIHYKDYAVWHKEQTNYQKDEEYWLDVFKGELPILDLPADFERPAERSFAGE
                     RVMFGLDKQITAQIKSLMAETDTTMYMFLLAAFNVLLSKYASQDDIIVGSPTAGRTHP
                     DLQGVPGMFVNTVALRTAPAGDKTFAQFLEEVKTASLQAFEHQSYPLEELIEKLPLTR
                     DTSRSPLFSVMFNMQNMEIPSLRLGDLKISSYSMLHHVAKFDLSLEAVEREEDIGLSF
                     DYATALFKDETIRRWSRHFVNIIKAAAANPNVRLSDVDLLSSAETAALLEERHMTQIT
                     EATFAALFEKQAQQTPDHSAVKAGGNLLTYRELDEQANQLAHHLRAQGAGNEDIVAIV
                     MDRSAEVMVSILGVMKAGAAFLPIDPDTPEERIRYSLEDSGAKFAVVNERNMTAIGQY
                     EGIIVSLDDGKWRNESKERPSSISGSRNLAYVIYTSGTTGKPKGVQIEHRNLTNYVSW
                     FSEEAGLTENDKTVLLSSYAFDLGYTSMFPVLLGGGELHIVQKETYTAPDEIAHYIKE
                     HGITYIKLTPSLFHTIVNTASFAKDANFESLRLIVLGGEKIIPTDVIAFRKMYGHTEF
                     INHYGPTEATIGAIAGRVDLYEPDAFAKRPTIGRPIANAGALVLNEALKLVPPGASGQ
                     LYITGQGLARGYLNRPQLTAERFVENPYSPGSLMYKTGDVVRRLSDGTLAFIGRADDQ
                     VKIRGYRIEPKEIETVMLSLSGIQEAVVLAVSEGGLQELCAYYTSDQDIEKAELRYQL
                     SLTLPSHMIPAFFVQVDAIPLTANGKTDRNALPKPNAAQSGGKALAAPETALEESLCR
                     IWQKTLGIEAIGIDDNFFDLGGHSLKGMMLIANIQAELEKSVPLKALFEQPTVRQLAA
                     YMEASAVSGGHQVLKPADKQDMYPLSSAQKRMYVLNQLDRQTISYNMPSVLLMEGELD
                     ISRLRDSLNQLVNRHESLRTSFMEANGEPVQRIIEKAEVDLHVFEAKEDEADQKIKEF
                     IRPFDLNDAPLIRAALLRIEAKKHLLLLDMHHIIADGVSRGIFVKELALLYKGEQLPE
                     PTLHYKDFAVWQNEAEQKERMKEHEAYWMSVLSGELPELDLPLDYARPPVQSFKGDTI
                     RFRTGSETAKAVEKLLAETGTTLHMVLHAVFHVFLSKISGQRDIVIGSVTAGRTNADV
                     QDMPGMFVNTLALRMEAKEQQTFAELLELAKQTNLSALEHQEYPFEDLVNQLDLPRDM
                     SRNPLFNVMVTTENPDKEQLTLQNLSISPYEAHQGTSKFDLTLGGFTDENGIGLQLEY
                     ATDLFAKETAEKWSEYVLRLLKAVADNPNQPLSSLLLVTETEKQALLEAWKGKALPVP
                     TDKTVHQLFEETVQRHKDRPAVTYNGQSWTYGELNAKANRLARILMDCGISPDDRVGV
                     LTKPSLEMSAAVLGVLKAGAAFVPIDPDYPDQRIEYILQDSGAKLLLKQEGISVPDSY
                     TGDVILLDGSRTILSLPLDENDEGNPETAVTAENLAYMIYTSGTTGQPKGVMVEHHAL
                     VNLCFWHHDAFSMTAEDRSAKYAGFGFDASIWEMFPTWTIGAELHVIDEAIRLDIVRL
                     NDYFETNGVTITFLPTQLAEQFMELENTSLRVLLTGGDKLKRAVKKPYTLVNNYGPTE
                     NTVVATSAEIHPEEGSLSIGRAIANTRVYILGEGNQVQPEGVAGELCVAGRGLARGYL
                     NREDETAKRFVADPFVPGERMYRTGDLVKWVNGGIEYIGRIDQQVKVRGYRIELSEIE
                     VQLAQLSEVQDAAVTAVKDKGGNTAIAAYVTPETADIEALKSTLKETLPDYMIPAFWV
                     TLNELPVTANGKVDRKALPEPDIEAGSGEYKAPTTDMEELLAGIWQDVLGMSEVGVTD
                     NFFSLGGDSIKGIQMASRLNQHGWKLEMKDLFQHPTIEELTQYVERAEGKQADQGPVE
                     GEVILTPIQRWFFEKNFTNKHHWNQSVMLHAKKGFDPERVEKTLQALIEHHDALRMVY
                     REENGDIVQVYKPIGESKVSFEIVDLYGSDEEMLRSQIKLLANKLQSSLDLRNGPLLK
                     AEQYRTEAGDHLLIAVHHLVVDGVSWRILLEDFASGYMQAEKEESLVFPQKTNSFKDW
                     AEELAAFSQSAHLLQQAEYWSQIAAEQVSPLPKDCETEQRIVKDTSSVLCELTAEDTK
                     HLLTDVHQPYGTEINDILLSALGLTMKEWTKGAKIGINLEGHGREDIIPNVNISRTVG
                     WFTAQYPVVLDISDADASAVIKTVKENLRRIPDKGVGYGILRYFTETAETKGFTPEIS
                     FNYLGQFDSEVKTDFFEPSAFDMGRQVSGESEALYALSFSGMIRNGRFVLSCSYNEKE
                     FERATVEEQMERFKENLLMLIRHCTEKEDKEFTPSDFSAEDLEMDEMGDIFDMLEENL
                     K*"
                     /label="srfAB CDS"
     gene            369311..380062
                     /gene="srfAB"
                     /locus_tag="BSU_03490"
                     /old_locus_tag="BSU03490"
                     /label="srfAB gene"
     CDS             372447..372587
                     /gene="comS"
                     /locus_tag="BSU_03500"
                     /old_locus_tag="BSU03500"
                     /function="16.3: Control"
                     /experiment="publication(s) with functional evidences,
                     PMID:10361283, 16554821, 8752331, 9696775, 22720735"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 10361283, 16554821,
                     8752331, 9696775, 22720735; Product type r: regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="regulator of genetic competence"
                     /protein_id="NP_388232.1"
                     /db_xref="EnsemblGenomes-Gn:BSU03500"
                     /db_xref="EnsemblGenomes-Tr:CAB12144"
                     /db_xref="GOA:P80355"
                     /db_xref="InterPro:IPR035139"
                     /db_xref="SubtiList:BG11045"
                     /db_xref="UniProtKB/Swiss-Prot:P80355"
                     /translation="MNRSGKHLISSIILYPRPSGECISSISLDKQTQATTSPLYFCWR
                     EK*"
                     /label="comS CDS"
     gene            372447..372587
                     /gene="comS"
                     /locus_tag="BSU_03500"
                     /old_locus_tag="BSU03500"
                     /label="comS gene"
     CDS             380099..383926
                     /gene="srfAC"
                     /locus_tag="BSU_03510"
                     /old_locus_tag="BSU03510"
                     /function="16.8: Protect"
                     /function="16.5: Explore"
                     /experiment="publication(s) with functional evidences,
                     PMID:15066026, 16166527, 16553878, 17227471, 14762003,
                     22720735, 26284661"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 15066026, 16166527,
                     16553878, 17227471, 14762003, 22720735, 26284661; Product
                     type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="surfactin synthetase"
                     /protein_id="NP_388233.2"
                     /db_xref="EnsemblGenomes-Gn:BSU03510"
                     /db_xref="EnsemblGenomes-Tr:CAB12145"
                     /db_xref="GOA:Q08787"
                     /db_xref="InterPro:IPR000873"
                     /db_xref="InterPro:IPR001031"
                     /db_xref="InterPro:IPR001242"
                     /db_xref="InterPro:IPR006162"
                     /db_xref="InterPro:IPR009081"
                     /db_xref="InterPro:IPR010071"
                     /db_xref="InterPro:IPR020806"
                     /db_xref="InterPro:IPR020845"
                     /db_xref="InterPro:IPR025110"
                     /db_xref="InterPro:IPR029058"
                     /db_xref="InterPro:IPR036736"
                     /db_xref="PDB:1JMK"
                     /db_xref="PDB:2VSQ"
                     /db_xref="SubtiList:BG10170"
                     /db_xref="UniProtKB/Swiss-Prot:Q08787"
                     /translation="MSQFSKDQVQDMYYLSPMQEGMLFHAILNPGQSFYLEQITMKVK
                     GSLNIKCLEESMNVIMDRYDVFRTVFIHEKVKRPVQVVLKKRQFHIEEIDLTHLTGSE
                     QTAKINEYKEQDKIRGFDLTRDIPMRAAIFKKAEESFEWVWSYHHIILDGWCFGIVVQ
                     DLFKVYNALREQKPYSLPPVKPYKDYIKWLEKQDKQASLRYWREYLEGFEGQTTFAEQ
                     RKKQKDGYEPKELLFSLSEAETKAFTELAKSQHTTLSTALQAVWSVLISRYQQSGDLA
                     FGTVVSGRPAEIKGVEHMVGLFINVVPRRVKLSEGITFNGLLKRLQEQSLQSEPHQYV
                     PLYDIQSQADQPKLIDHIIVFENYPLQDAKNEESSENGFDMVDVHVFEKSNYDLNLMA
                     SPGDEMLIKLAYNENVFDEAFILRLKSQLLTAIQQLIQNPDQPVSTINLVDDREREFL
                     LTGLNPPAQAHETKPLTYWFKEAVNANPDAPALTYSGQTLSYRELDEEANRIARRLQK
                     HGAGKGSVVALYTKRSLELVIGILGVLKAGAAYLPVDPKLPEDRISYMLADSAAACLL
                     THQEMKEQAAELPYTGTTLFIDDQTRFEEQASDPATAIDPNDPAYIMYTSGTTGKPKG
                     NITTHANIQGLVKHVDYMAFSDQDTFLSVSNYAFDAFTFDFYASMLNAARLIIADEHT
                     LLDTERLTDLILQENVNVMFATTALFNLLTDAGEDWMKGLRCILFGGERASVPHVRKA
                     LRIMGPGKLINCYGPTEGTVFATAHVVHDLPDSISSLPIGKPISNASVYILNEQSQLQ
                     PFGAVGELCISGMGVSKGYVNRADLTKEKFIENPFKPGETLYRTGDLARWLPDGTIEY
                     AGRIDDQVKIRGHRIELEEIEKQLQEYPGVKDAVVVADRHESGDASINAYLVNRTQLS
                     AEDVKAHLKKQLPAYMVPQTFTFLDELPLTTNGKVNKRLLPKPDQDQLAEEWIGPRNE
                     MEETIAQIWSEVLGRKQIGIHDDFFALGGHSLKAMTAASRIKKELGIDLPVKLLFEAP
                     TIAGISAYLKNGGSDGLQDVTIMNQDQEQIIFAFPPVLGYGLMYQNLSSRLPSYKLCA
                     FDFIEEEDRLDRYADLIQKLQPEGPLTLFGYSAGCSLAFEAAKKLEEQGRIVQRIIMV
                     DSYKKQGVSDLDGRTVESDVEALMNVNRDNEALNSEAVKHGLKQKTHAFYSYYVNLIS
                     TGQVKADIDLLTSGADFDMPEWLASWEEATTGVYRVKRGFGTHAEMLQGETLDRNAEI
                     LLEFLNTQTVTVS*"
                     /label="srfAC CDS"
     gene            380099..383926
                     /gene="srfAC"
                     /locus_tag="BSU_03510"
                     /old_locus_tag="BSU03510"
                     /label="srfAC gene"
     CDS             383955..384683
                     /gene="srfAD"
                     /locus_tag="BSU_03520"
                     /old_locus_tag="BSU03520"
                     /function="16.8: Protect"
                     /function="16.5: Explore"
                     /experiment="publication(s) with functional evidences,
                     PMID:16166527, 16553878, 17227471, 14762003, 22720735,
                     26284661"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 16166527, 16553878,
                     17227471, 14762003, 22720735, 26284661; Product type e :
                     enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="surfactin synthetase"
                     /protein_id="NP_388234.1"
                     /db_xref="EnsemblGenomes-Gn:BSU03520"
                     /db_xref="EnsemblGenomes-Tr:CAB12146"
                     /db_xref="GOA:Q08788"
                     /db_xref="InterPro:IPR001031"
                     /db_xref="InterPro:IPR012223"
                     /db_xref="InterPro:IPR029058"
                     /db_xref="PDB:2K2Q"
                     /db_xref="PDB:2RON"
                     /db_xref="SubtiList:BG10171"
                     /db_xref="UniProtKB/Swiss-Prot:Q08788"
                     /translation="MSQLFKSFDASEKTQLICFPFAGGYSASFRPLHAFLQGECEMLA
                     AEPPGHGTNQTSAIEDLEELTDLYKQELNLRPDRPFVLFGHSMGGMITFRLAQKLERE
                     GIFPQAVIISAIQPPHIQRKKVSHLPDDQFLDHIIQLGGMPAELVENKEVMSFFLPSF
                     RSDYRALEQFELYDLAQIQSPVHVFNGLDDKKCIRDAEGWKKWAKDITFHQFDGGHMF
                     LLSQTEEVAERIFAILNQHPIIQP*"
                     /label="srfAD CDS"
     gene            383955..384683
                     /gene="srfAD"
                     /locus_tag="BSU_03520"
                     /old_locus_tag="BSU03520"
                     /label="srfAD gene"
     downshifts      384665
                     /Source="Nicolas_upshifts"
                     /id="D154"
                     /incds=0
                     /nref=196
                     /ntot=261
                     /MaxReadThrough="4.65721"
                     /MaxDrop="6.48992"
                     /score="24.9581454"
                     /energy="-11.1"
                     /TU="U268"
                     /idTUdmin="U268"
                     /TUdmin="-1339"
                     /isTUend="FALSE"
                     /label="downshifts"
     promotor_-35    384721..384728
                     /Source="Nicolas_upshift_promotors"
                     /id="U269"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.795204795204795"
                     /psig=1
                     /xcortree=2955
                     /SigmaFactorBS="cattcaaccgtgatcaaaagcggacagcttcggctgttccgc
                     tttttttgTGTTGAATgccaatttctgCATGGTATAATAGTCGAAATactcaaataaa
                     g"
                     /listShort="ycxA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     upshifts        384731
                     /Source="Nicolas_upshifts"
                     /id="U269"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.795204795204795"
                     /psig=1
                     /xcortree=2955
                     /SigmaFactorBS="cattcaaccgtgatcaaaagcggacagcttcggctgttccgc
                     tttttttgTGTTGAATgccaatttctgCATGGTATAATAGTCGAAATactcaaataaa
                     g"
                     /listShort="ycxA"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-10    384740..384759
                     /Source="Nicolas_upshift_promotors"
                     /id="U269"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.795204795204795"
                     /psig=1
                     /xcortree=2955
                     /SigmaFactorBS="cattcaaccgtgatcaaaagcggacagcttcggctgttccgc
                     tttttttgTGTTGAATgccaatttctgCATGGTATAATAGTCGAAATactcaaataaa
                     g"
                     /listShort="ycxA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     CDS             384784..386010
                     /gene="srfT"
                     /locus_tag="BSU_03530"
                     /old_locus_tag="BSU03530"
                     /function="16.1: Circulate"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 1b: Function from experimental evidences
                     in the studied species; PubMedId: 15849754, 16850406,
                     25366377; Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="surfactin exporter"
                     /protein_id="NP_388235.2"
                     /db_xref="EnsemblGenomes-Gn:BSU03530"
                     /db_xref="EnsemblGenomes-Tr:CAB12147"
                     /db_xref="GOA:Q08791"
                     /db_xref="InterPro:IPR011701"
                     /db_xref="InterPro:IPR020846"
                     /db_xref="InterPro:IPR036259"
                     /db_xref="SubtiList:BG10172"
                     /db_xref="UniProtKB/Swiss-Prot:Q08791"
                     /translation="MRTSPRMKWFVLLFTFVFAIGMNSFRNSFQFFMLPMADAFHADR
                     SLISVSVSIFMITTGIVQFFVGFFIDRFSVRKIMALGAVCISASFLVLPYSPNVHVFS
                     AIYGVLGGIGYSCAVGVTTQYFISCWFDTHKGLALAILTNANSAGLLLLSPIWAAAPY
                     HAGWQSTYTILGIVMAAVLLPLLVFGMKHPPHAQAETVKKSYDWRGFWNVMKQSRLIH
                     ILYFGVFTCGFTMGIIDAHLVPILKDAHVSHVNGMMAAFGAFIIIGGLLAGWLSDLLG
                     SRSVMLSILFFIRLLSLICLLIPILGIHHSDLWYFGFILLFGLSYTGVIPLTAASISE
                     SYQTGLIGSLLGINFFIHQVAGALSVYAGGLFFDMTHGYLLIVAVCIVFVGLSAVIEL
                     VPFLDKQKAKETHHSI*"
                     /label="srfT CDS"
     gene            384784..386010
                     /gene="srfT"
                     /locus_tag="BSU_03530"
                     /old_locus_tag="BSU03530"
                     /label="srfT gene"
     downshifts      386004
                     /Source="Nicolas_upshifts"
                     /id="D155"
                     /incds=0
                     /nref=15
                     /ntot=198
                     /MaxReadThrough="2.67601"
                     /MaxDrop="4.06773"
                     /score="7.33278866"
                     /energy="-13.2"
                     /TU="NA"
                     /idTUdmin="U268"
                     /TUdmin=0
                     /isTUend="TRUE"
                     /label="downshifts"
     CDS             complement(386025..386582)
                     /gene="ycxB"
                     /locus_tag="BSU_03540"
                     /old_locus_tag="BSU03540"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 5: Unknown function; PubMedId : 21965396"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="NP_388236.1"
                     /db_xref="EnsemblGenomes-Gn:BSU03540"
                     /db_xref="EnsemblGenomes-Tr:CAB12148"
                     /db_xref="GOA:Q08793"
                     /db_xref="InterPro:IPR025588"
                     /db_xref="SubtiList:BG10173"
                     /db_xref="UniProtKB/Swiss-Prot:Q08793"
                     /translation="MIQYASESINLPGEITFKDVREIFFYQIAKISCFYFLLFCAIFA
                     AVNFINGWPRIVYGSDALNLFMNSMLIIVMSVLFTLLLLLLLYVKFSRAYKKNERMKS
                     KRTYTLNQEGIRICSKKYDLIFNWDEITAVFEYKNIFRVNTSSGQYIAIPKHFFHSEE
                     EMNRFKEIILKNTETKKLKFKKDQH*"
                     /label="ycxB CDS"
     gene            complement(386025..386582)
                     /gene="ycxB"
                     /locus_tag="BSU_03540"
                     /old_locus_tag="BSU03540"
                     /label="ycxB gene"
     promotor_no_box complement(386040..386140)
                     /Source="Nicolas_upshift_promotors"
                     /id="U270"
                     /multdbtbs="-"
                     /comp="M21"
                     /sig="Sig-"
                     /pcomp="0.725274725274725"
                     /psig="0.024975024975025"
                     /xcortree=283
                     /SigmaFactorBS="atattgcgatccccaaacatttttttcactccgaagaggaga
                     tgaacagattcaaggagattatccttaaaaataccgaaacaaaaaaactcaaatttaa
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_no_box"
     downshifts      complement(386062)
                     /Source="Nicolas_upshifts"
                     /id="D156"
                     /incds=0
                     /nref=46
                     /ntot=241
                     /MaxReadThrough="0.9216"
                     /MaxDrop="4.25654"
                     /score="8.42655219"
                     /energy="-14.3"
                     /TU="U270"
                     /idTUdmin="U271"
                     /TUdmin=18
                     /isTUend="TRUE"
                     /label="downshifts"
     upshifts        complement(386080)
                     /Source="Nicolas_upshifts"
                     /id="U270"
                     /multdbtbs="-"
                     /comp="M21"
                     /sig="Sig-"
                     /pcomp="0.725274725274725"
                     /psig="0.024975024975025"
                     /xcortree=283
                     /SigmaFactorBS="atattgcgatccccaaacatttttttcactccgaagaggaga
                     tgaacagattcaaggagattatccttaaaaataccgaaacaaaaaaactcaaatttaa
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     misc_feature    complement(386611..386630)
                     /Source="Nicolas_upshift_promotors"
                     /id="U271"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.942057942057942"
                     /psig=1
                     /xcortree=3105
                     /SigmaFactorBS="aaaaaacaaagcgccctggtatgcctgcaaaaaaatgagaaa
                     tTATGCTAGACTAAAAGGAAAaacatggttagaggtgtaggtttaccgtatgattcaa
                     t"
                     /listShort="ycxB"
                     /GFF_Attribute="listLong"
                     /label="promotor_single_box"
                     /note="Geneious type: promotor_single_box"
     upshifts        complement(386613)
                     /Source="Nicolas_upshifts"
                     /id="U271"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.942057942057942"
                     /psig=1
                     /xcortree=3105
                     /SigmaFactorBS="aaaaaacaaagcgccctggtatgcctgcaaaaaaatgagaaa
                     tTATGCTAGACTAAAAGGAAAaacatggttagaggtgtaggtttaccgtatgattcaa
                     t"
                     /listShort="ycxB"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             complement(386636..387574)
                     /gene="ycxC"
                     /locus_tag="BSU_03550"
                     /old_locus_tag="BSU03550"
                     /function="16.1: Circulate"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 15849754, 16850406;
                     Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="putative permease"
                     /protein_id="NP_388237.2"
                     /db_xref="EnsemblGenomes-Gn:BSU03550"
                     /db_xref="EnsemblGenomes-Tr:CAB12149"
                     /db_xref="GOA:Q08794"
                     /db_xref="InterPro:IPR000620"
                     /db_xref="SubtiList:BG10174"
                     /db_xref="UniProtKB/Swiss-Prot:Q08794"
                     /translation="MVKHQQTPAYIAAILYSFIIGLSFLFVKIALQTAEPFDILAHRF
                     TIAFAAATVPILFGWVKLSIRVKDVIDILPLALLYPALFFSFQAFGLVYSSSSEAGII
                     QAAIPIFTMVFAAYVLKERPTWTQKGFTVLSVAGVMFIFVMKGVDVESASLKGSLLIL
                     LSALSSAMYNTAARKMTQRFKLTELTYIMSAIGFVVFNAIALVRHGAAGTVGTYFLPF
                     REPGFVLAIVYLGVLSSLVTSFLSNYTLSRIEAFKMSAFNHVSTIVTMIAGFVILNES
                     LAWYHLAGAVCIMIGVVGSNINLEKKTKRPGMPAKK*"
                     /label="ycxC CDS"
     gene            complement(386636..387574)
                     /gene="ycxC"
                     /locus_tag="BSU_03550"
                     /old_locus_tag="BSU03550"
                     /label="ycxC gene"
     promotor_-10    complement(387613..387631)
                     /Source="Nicolas_upshift_promotors"
                     /id="U272"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.536463536463537"
                     /psig="0.536463536463537"
                     /xcortree=793
                     /SigmaFactorBS="tgtaccggtacagttcattgtttttctcATTGTAccgttctg
                     accgcggCCATACAATAAAGGGAGCGaccggcgctgcaattcaggtaaaggagccctt
                     c"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(387620)
                     /Source="Nicolas_upshifts"
                     /id="U272"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.536463536463537"
                     /psig="0.536463536463537"
                     /xcortree=793
                     /SigmaFactorBS="tgtaccggtacagttcattgtttttctcATTGTAccgttctg
                     accgcggCCATACAATAAAGGGAGCGaccggcgctgcaattcaggtaaaggagccctt
                     c"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(387647..387652)
                     /Source="Nicolas_upshift_promotors"
                     /id="U272"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.536463536463537"
                     /psig="0.536463536463537"
                     /xcortree=793
                     /SigmaFactorBS="tgtaccggtacagttcattgtttttctcATTGTAccgttctg
                     accgcggCCATACAATAAAGGGAGCGaccggcgctgcaattcaggtaaaggagccctt
                     c"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             387698..389032
                     /gene="ycxD"
                     /locus_tag="BSU_03560"
                     /old_locus_tag="BSU03560"
                     /function="16.3: Control"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 15223311, 26585522;
                     Product type r: regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="putative PLP-dependent transcriptional
                     regulator"
                     /protein_id="NP_388238.1"
                     /db_xref="EnsemblGenomes-Gn:BSU03560"
                     /db_xref="EnsemblGenomes-Tr:CAB12150"
                     /db_xref="GOA:Q08792"
                     /db_xref="InterPro:IPR000524"
                     /db_xref="InterPro:IPR004839"
                     /db_xref="InterPro:IPR015421"
                     /db_xref="InterPro:IPR015422"
                     /db_xref="InterPro:IPR015424"
                     /db_xref="InterPro:IPR036388"
                     /db_xref="InterPro:IPR036390"
                     /db_xref="SubtiList:BG10175"
                     /db_xref="UniProtKB/Swiss-Prot:Q08792"
                     /translation="MEKYMSLLTRIEEMMQSTSYQEGDRLPSIRQLSARYQVSKSTVI
                     RALQELEKRHLIYSVPKSGYYIVKKSGKSKSGQPGPIDFATSAPDPDVFPYLDFQHCI
                     NKAIDTYKNDLFIYGTPKGLPSLIRVLRKLLATQQVFADERHIFITSGVQQALSLLCA
                     MPFPNGKEKIAIEQPGYHLMVEQLETLGIPAIGVKRTEEGLDIAKVERLFQTESIKFF
                     YTMPRFHNPLGCSLSERDKQELVRLAEAYDVYLVEDDYLGDLEENKKADPLYAYDLSS
                     HVIYLKSFSKMMFPGLRVGAAVLPEALTDTFYAYKKLNDIDCSMISQAALEIYLKSGM
                     YGRHKEKIRDSYKERSLRLHQAIRTHRQLGSGRFTFSSGQAPCMHTHLVLPQDLPASR
                     VIHRLEKQGVLLEAIDRHYLSDYPKENLLKINISNVKTEDIERGVKLLMSHL*"
                     /label="ycxD CDS"
     gene            387698..389032
                     /gene="ycxD"
                     /locus_tag="BSU_03560"
                     /old_locus_tag="BSU03560"
                     /label="ycxD gene"
     CDS             complement(389027..389194)
                     /gene="sfpAc"
                     /locus_tag="BSU_03569"
                     /old_locus_tag="BSU03569"
                     /EC_number="2.7.8.-"
                     /function="16.5: Explore"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 1b: Function from experimental evidences
                     in the studied species; PubMedId: 10568751, 17376553,
                     2848009, 9384377, 14762003, 16707694, 19061923, 20971906,
                     25288929, 26268540; Product type e: enzyme"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="C-terminal part of 4'-phosphopantetheinyl
                     transferase (Surfactin synthetase-activating enzyme)"
                     /db_xref="PSEUDO:CAX52545.1"
                     /translation="MRLHQDGQVSIELPDSHSPCYIKTYEVDPGYKMAVCAVHPDFPE
                     DITMVSYEELL*"
                     /label="sfpAc CDS"
     gene            complement(389027..389194)
                     /gene="sfpAc"
                     /locus_tag="BSU_03569"
                     /old_locus_tag="BSU03569"
                     /pseudo
                     /label="sfpAc gene"
     CDS             complement(389205..389702)
                     /gene="sfpAn"
                     /locus_tag="BSU_03570"
                     /old_locus_tag="BSU03570"
                     /EC_number="2.7.8.-"
                     /function="16.5: Explore"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 1b: Function from experimental evidences
                     in the studied species; PubMedId: 10568751, 17376553,
                     2848009, 9384377, 14762003, 16707694, 19061923, 20971906,
                     25288929, 26268540; Product type e: enzyme"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="N-terminal part of 4'-phosphopantetheinyl
                     transferase (surfactin synthetase-activating enzyme)"
                     /db_xref="GOA:P39135"
                     /db_xref="InterPro:IPR004568"
                     /db_xref="InterPro:IPR008278"
                     /db_xref="InterPro:IPR037143"
                     /db_xref="PDB:1QR0"
                     /db_xref="PDB:2GE0"
                     /db_xref="PDB:2GE1"
                     /db_xref="PDB:4MRT"
                     /db_xref="PSEUDO:CAB12151.2"
                     /db_xref="SubtiList:BG10176"
                     /db_xref="UniProtKB/Swiss-Prot:P39135"
                     /translation="MKIYGIYMDRPLSQEENERFMSFISPEKREKCRRFYHKEDAHRT
                     LLGDVLVRSVISRQYQLDKSDIRFSTQEYGKPCIPDLPDAHFNISHSGRWVICAFDSQ
                     PIGIDIEKTKPISLEIAKRFFSKTEYSDLLAKDKDEQTDYFYHLWSMKESFIKQGRQR
                     LIASA*"
                     /label="sfpAn CDS"
     gene            complement(389205..389702)
                     /gene="sfpAn"
                     /locus_tag="BSU_03570"
                     /old_locus_tag="BSU03570"
                     /pseudo
                     /label="sfpAn gene"
     misc_feature    complement(389729..389748)
                     /Source="Nicolas_upshift_promotors"
                     /id="U273"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.984015984015984"
                     /psig=1
                     /xcortree=2243
                     /SigmaFactorBS="agccgccttggctttgtttttttattttctcctctatatgag
                     tcttgtggaagTATGATAGGATGGTTTTGACaatcttttgcagacggaggatctagaa
                     t"
                     /listShort="sfp, sfp"
                     /GFF_Attribute="listLong"
                     /label="promotor_single_box"
                     /note="Geneious type: promotor_single_box"
     upshifts        complement(389741)
                     /Source="Nicolas_upshifts"
                     /id="U273"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.984015984015984"
                     /psig=1
                     /xcortree=2243
                     /SigmaFactorBS="agccgccttggctttgtttttttattttctcctctatatgag
                     tcttgtggaagTATGATAGGATGGTTTTGACaatcttttgcagacggaggatctagaa
                     t"
                     /listShort="sfp, sfp"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             complement(389807..390454)
                     /gene="yczE"
                     /locus_tag="BSU_03580"
                     /old_locus_tag="BSU03580"
                     /function="15.11: Biosynthesis of natural products"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 2a: Function from experimental evidences
                     in other organisms; PubMedId: 15849754, 16850406,
                     17827323, 14762003, 16707694, 17827323, 25288929; Product
                     type m: membrane component"
                     /codon_start=1
                     /transl_table=11
                     /product="integral inner membrane protein regulating
                     antibiotic production"
                     /protein_id="NP_388240.2"
                     /db_xref="EnsemblGenomes-Gn:BSU03580"
                     /db_xref="EnsemblGenomes-Tr:CAB12152"
                     /db_xref="GOA:O34927"
                     /db_xref="SubtiList:BG12779"
                     /db_xref="UniProtKB/Swiss-Prot:O34927"
                     /translation="MKQELVLRWTFYFAGLIILAFGVSLTIEGKALGISPWDAFHYSL
                     FQHFGLTVGQWSIIIGALIVGFTSLFTRAWPKIGALLNMVLIGVFIDFFNFILPALST
                     YTGSIIVFSLGVVLIGYGVGVYVSAGLGAGPRDSLMMLITEKTGWNVQWVRNGMELTI
                     LFAAWGMGGPIGFGTILTAILTGLILRFSLPQSIQLLNYAVARRTAAVKASPPVH*"
                     /label="yczE CDS"
     gene            complement(389807..390454)
                     /gene="yczE"
                     /locus_tag="BSU_03580"
                     /old_locus_tag="BSU03580"
                     /label="yczE gene"
     promotor_-10    complement(390483..390502)
                     /Source="Nicolas_upshift_promotors"
                     /id="U274"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.866133866133866"
                     /psig=1
                     /xcortree=2616
                     /SigmaFactorBS="tttttttgttgagcccctttcgccTATTCcgcccttctgtca
                     gaTGTGCTACAATGACAATCGActgatttttacgaaagaagggacctcacgtgaagca
                     a"
                     /listShort="yczE, sfp, sfp"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(390486)
                     /Source="Nicolas_upshifts"
                     /id="U274"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.866133866133866"
                     /psig=1
                     /xcortree=2616
                     /SigmaFactorBS="tttttttgttgagcccctttcgccTATTCcgcccttctgtca
                     gaTGTGCTACAATGACAATCGActgatttttacgaaagaagggacctcacgtgaagca
                     a"
                     /listShort="yczE, sfp, sfp"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(390518..390522)
                     /Source="Nicolas_upshift_promotors"
                     /id="U274"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.866133866133866"
                     /psig=1
                     /xcortree=2616
                     /SigmaFactorBS="tttttttgttgagcccctttcgccTATTCcgcccttctgtca
                     gaTGTGCTACAATGACAATCGActgatttttacgaaagaagggacctcacgtgaagca
                     a"
                     /listShort="yczE, sfp, sfp"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     S_feature       complement(390623..390774)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_409056_409207_c"
                     /HighExp="G180, G135, dia15, H2O2, Diami, S8, Oxctl, G150,
                     LPhT, Heat"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="NA"
                     /TUshortPSig="NA"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S127"
     CDS             complement(390775..391518)
                     /gene="tcyC"
                     /locus_tag="BSU_03590"
                     /old_locus_tag="BSU03590"
                     /function="16.1: Circulate"
                     /experiment="publication(s) with functional evidences,
                     PMID:15262924, 16513748, 22212096"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 15262924, 16513748,
                     22212096; Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="cystine ABC transporter (ATP-binding protein)"
                     /protein_id="NP_388241.2"
                     /db_xref="EnsemblGenomes-Gn:BSU03590"
                     /db_xref="EnsemblGenomes-Tr:CAB12153"
                     /db_xref="GOA:P39456"
                     /db_xref="InterPro:IPR003439"
                     /db_xref="InterPro:IPR003593"
                     /db_xref="InterPro:IPR017871"
                     /db_xref="InterPro:IPR027417"
                     /db_xref="InterPro:IPR030679"
                     /db_xref="SubtiList:BG11185"
                     /db_xref="UniProtKB/Swiss-Prot:P39456"
                     /translation="MLTVKGLNKSFGENEILKKIDMKIEKGKVIAILGPSGSGKTTLL
                     RCLNALEIPNRGELAFDDFSIDFSKKVKQADILKLRRKSGMVFQAYHLFPHRTALENV
                     MEGPVQVQKRNKEEVRKEAIQLLDKVGLKDKMDLYPFQLSGGQQQRVGIARALAIQPE
                     LMLFDEPTSALDPELVGEVLKVIKDLANEGWTMVVVTHEIKFAQEVADEVIFIDGGVI
                     VEQGPPEQIFSAPKEERTQRFLNRILNPL*"
                     /label="tcyC CDS"
     gene            complement(390775..391518)
                     /gene="tcyC"
                     /locus_tag="BSU_03590"
                     /old_locus_tag="BSU03590"
                     /label="tcyC gene"
     downshifts      complement(390831)
                     /Source="Nicolas_upshifts"
                     /id="D157"
                     /incds=0
                     /nref=72
                     /ntot=232
                     /MaxReadThrough="4.60958"
                     /MaxDrop="4.44283"
                     /score="1.62131565"
                     /energy="-12.6"
                     /TU="U275"
                     /idTUdmin="U276"
                     /TUdmin=4
                     /isTUend="TRUE"
                     /label="downshifts"
     CDS             complement(391532..392236)
                     /gene="tcyB"
                     /locus_tag="BSU_03600"
                     /old_locus_tag="BSU03600"
                     /function="16.1: Circulate"
                     /experiment="publication(s) with functional evidences,
                     PMID:15262924, 15849754, 16850406, 22212096"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 15262924, 15849754,
                     16850406, 22212096; Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="cystine ABC transporter (permease)"
                     /protein_id="NP_388242.1"
                     /db_xref="EnsemblGenomes-Gn:BSU03600"
                     /db_xref="EnsemblGenomes-Tr:CAB12154"
                     /db_xref="GOA:P42200"
                     /db_xref="InterPro:IPR000515"
                     /db_xref="InterPro:IPR010065"
                     /db_xref="InterPro:IPR035906"
                     /db_xref="SubtiList:BG11186"
                     /db_xref="UniProtKB/Swiss-Prot:P42200"
                     /translation="MFLNNLPALTLGTAIPWDLVQQSFWPILSGGIYYTIPLTILSFI
                     FGMILALITALARMSKVRPLRWVFSVYVSAIRGTPLLVQLFIIFYLFPAFNVTLDPFP
                     SAVIAFSLNVGAYASEIIRASILSVPKGQWEAGYTIGMTHQKTLFRVILPQAFRVSIP
                     PLSNTFISLIKDTSLASQILVAELFRKAQEIGARNLDQILVIYIEAAFIYWIICFLLS
                     LVQHVIERRLDRYVAK*"
                     /label="tcyB CDS"
     gene            complement(391532..392236)
                     /gene="tcyB"
                     /locus_tag="BSU_03600"
                     /old_locus_tag="BSU03600"
                     /label="tcyB gene"
     CDS             complement(392223..393029)
                     /gene="tcyA"
                     /locus_tag="BSU_03610"
                     /old_locus_tag="BSU03610"
                     /function="16.1: Circulate"
                     /experiment="publication(s) with functional evidences,
                     PMID:15262924, 22212096"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 15262924, 22212096;
                     Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="cystine ABC transporter (substrate-binding
                     lipoprotein)"
                     /protein_id="NP_388243.2"
                     /db_xref="EnsemblGenomes-Gn:BSU03610"
                     /db_xref="EnsemblGenomes-Tr:CAB12155"
                     /db_xref="GOA:P42199"
                     /db_xref="InterPro:IPR001638"
                     /db_xref="InterPro:IPR018313"
                     /db_xref="SubtiList:BG11187"
                     /db_xref="UniProtKB/Swiss-Prot:P42199"
                     /translation="MKKALLALFMVVSIAALAACGAGNDNQSKDNAKDGDLWASIKKK
                     GVLTVGTEGTYEPFTYHDKDTDKLTGYDVEVITEVAKRLGLKVDFKETQWDSMFAGLN
                     SKRFDVVANQVGKTDREDKYDFSDKYTTSRAVVVTKKDNNDIKSEADVKGKTSAQSLT
                     SNYNKLATNAGAKVEGVEGMAQALQMIQQGRVDMTYNDKLAVLNYLKTSGNKNVKIAF
                     ETGEPQSTYFTFRKGSGEVVDQVNKALKEMKEDGTLSKISKKWFGEDVSK*"
                     /label="tcyA CDS"
     gene            complement(392223..393029)
                     /gene="tcyA"
                     /locus_tag="BSU_03610"
                     /old_locus_tag="BSU03610"
                     /label="tcyA gene"
     promotor_-10    complement(393078..393097)
                     /Source="Nicolas_upshift_promotors"
                     /id="U275"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.913086913086913"
                     /psig="0.987012987012987"
                     /xcortree=1798
                     /SigmaFactorBS="ttttaaaagattttgtcttatgaaaaccaaatACTTGACTca
                     tactaaaaaaaAGTTATCCTTTAGATTTGTAagctaattttttatttcaataaaatca
                     a"
                     /listShort="tcyA, tcyB, tcyC"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(393090)
                     /Source="Nicolas_upshifts"
                     /id="U275"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.913086913086913"
                     /psig="0.987012987012987"
                     /xcortree=1798
                     /SigmaFactorBS="ttttaaaagattttgtcttatgaaaaccaaatACTTGACTca
                     tactaaaaaaaAGTTATCCTTTAGATTTGTAagctaattttttatttcaataaaatca
                     a"
                     /listShort="tcyA, tcyB, tcyC"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(393111..393118)
                     /Source="Nicolas_upshift_promotors"
                     /id="U275"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.913086913086913"
                     /psig="0.987012987012987"
                     /xcortree=1798
                     /SigmaFactorBS="ttttaaaagattttgtcttatgaaaaccaaatACTTGACTca
                     tactaaaaaaaAGTTATCCTTTAGATTTGTAagctaattttttatttcaataaaatca
                     a"
                     /listShort="tcyA, tcyB, tcyC"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             complement(393145..394017)
                     /gene="bsdA"
                     /locus_tag="BSU_03620"
                     /old_locus_tag="BSU03620"
                     /function="16.3: Control"
                     /experiment="publication(s) with functional evidences,
                     PMID:17295427"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 17295427; Product type r:
                     regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="HTH-type transcriptional regulator BsdA (LysR
                     family)"
                     /protein_id="NP_388244.1"
                     /db_xref="EnsemblGenomes-Gn:BSU03620"
                     /db_xref="EnsemblGenomes-Tr:CAB12156"
                     /db_xref="GOA:P94403"
                     /db_xref="InterPro:IPR000847"
                     /db_xref="InterPro:IPR005119"
                     /db_xref="InterPro:IPR036388"
                     /db_xref="InterPro:IPR036390"
                     /db_xref="SubtiList:BG12022"
                     /db_xref="UniProtKB/Swiss-Prot:P94403"
                     /translation="MDIRQLRYFITIAQEQKITSAAKKLHMAQPPLSRQLKQLEDELG
                     VVLFDRNKKKQMTLTYEGAVFLKRAKEILHRFEDAVIEVQELKEEVAGTLAVGSTIYC
                     AALMLEKVTQIKERYPHLTFNIWENEPATLLELLESRQIDAAVTTTLIKSDTVQFKQL
                     DDIPCVLVLSDEAGYPCGDTIKMVDIPSFPLILLRPVNGKGVYNQVMNEFHRLNLEPR
                     IVCECHDSATLLSLVSSGFGASILPVTMIPVHMRNHVHTVHIENNPFIMTPAVMWRTD
                     SYLPKPAQQFLDLF*"
                     /label="bsdA CDS"
     gene            complement(393145..394017)
                     /gene="bsdA"
                     /locus_tag="BSU_03620"
                     /old_locus_tag="BSU03620"
                     /label="bsdA gene"
     promotor_-10    complement(393755..393773)
                     /Source="Nicolas_upshift_promotors"
                     /id="U276"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp="0.999000999001"
                     /psig="0.999000999001"
                     /xcortree=148
                     /SigmaFactorBS="ctaaaaagagcaaaagagattctgcataGGTTTGAagatgca
                     gtcattgAGGTACAGGAGCTGAAGGAggaagtagccggtacacttgccgtgggatcaa
                     c"
                     /listShort="tcyA, tcyB, tcyC"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(393762)
                     /Source="Nicolas_upshifts"
                     /id="U276"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp="0.999000999001"
                     /psig="0.999000999001"
                     /xcortree=148
                     /SigmaFactorBS="ctaaaaagagcaaaagagattctgcataGGTTTGAagatgca
                     gtcattgAGGTACAGGAGCTGAAGGAggaagtagccggtacacttgccgtgggatcaa
                     c"
                     /listShort="tcyA, tcyB, tcyC"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(393788..393794)
                     /Source="Nicolas_upshift_promotors"
                     /id="U276"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp="0.999000999001"
                     /psig="0.999000999001"
                     /xcortree=148
                     /SigmaFactorBS="ctaaaaagagcaaaagagattctgcataGGTTTGAagatgca
                     gtcattgAGGTACAGGAGCTGAAGGAggaagtagccggtacacttgccgtgggatcaa
                     c"
                     /listShort="tcyA, tcyB, tcyC"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-35    394071..394078
                     /Source="Nicolas_upshift_promotors"
                     /id="U278"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.947052947052947"
                     /psig="0.97902097902098"
                     /xcortree=1580
                     /SigmaFactorBS="ccttttaggtattaattatagatttaatagaTATTTTTCata
                     tggatatatcAGGAGTATGATTGAAATGAAagcagaattcaagcgtaaaggagggggc
                     a"
                     /listShort="ubiX, ubiD, bsdD, yclD"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    complement(394086..394105)
                     /Source="Nicolas_upshift_promotors"
                     /id="U277"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.978021978021978"
                     /psig="0.985014985014985"
                     /xcortree=1966
                     /SigmaFactorBS="cgagtttcactttgccccctcctttaCGCTTGAAttctgctt
                     tcattTCAATCATACTCCTGATATAtccatatgaaaaatatctattaaatctataatt
                     a"
                     /listShort="yclA"
                     /listLong="tcyA, tcyB, tcyC"
                     /label="promotor_-10"
     promotor_-10    394092..394111
                     /Source="Nicolas_upshift_promotors"
                     /id="U278"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.947052947052947"
                     /psig="0.97902097902098"
                     /xcortree=1580
                     /SigmaFactorBS="ccttttaggtattaattatagatttaatagaTATTTTTCata
                     tggatatatcAGGAGTATGATTGAAATGAAagcagaattcaagcgtaaaggagggggc
                     a"
                     /listShort="ubiX, ubiD, bsdD, yclD"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(394092)
                     /Source="Nicolas_upshifts"
                     /id="U277"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.978021978021978"
                     /psig="0.985014985014985"
                     /xcortree=1966
                     /SigmaFactorBS="cgagtttcactttgccccctcctttaCGCTTGAAttctgctt
                     tcattTCAATCATACTCCTGATATAtccatatgaaaaatatctattaaatctataatt
                     a"
                     /listShort="yclA"
                     /listLong="tcyA, tcyB, tcyC"
                     /label="upshifts"
     upshifts        394100
                     /Source="Nicolas_upshifts"
                     /id="U278"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.947052947052947"
                     /psig="0.97902097902098"
                     /xcortree=1580
                     /SigmaFactorBS="ccttttaggtattaattatagatttaatagaTATTTTTCata
                     tggatatatcAGGAGTATGATTGAAATGAAagcagaattcaagcgtaaaggagggggc
                     a"
                     /listShort="ubiX, ubiD, bsdD, yclD"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             394107..394721
                     /gene="ubiX"
                     /locus_tag="BSU_03630"
                     /old_locus_tag="BSU03630"
                     /EC_number="4.1.1.-"
                     /EC_number="4.1.1.61"
                     /function="3.2: Degradation"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 1b: Function from experimental evidences
                     in the studied species; PubMedId: 10919793, 15979273,
                     17295427, 18388975, 26083743, 26658822, 26337367; Product
                     type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="phenolic acid decarboxylase-flavin
                     prenyltransferase subunit"
                     /protein_id="NP_388245.1"
                     /db_xref="EnsemblGenomes-Gn:BSU03630"
                     /db_xref="EnsemblGenomes-Tr:CAB12157"
                     /db_xref="GOA:P94404"
                     /db_xref="InterPro:IPR003382"
                     /db_xref="InterPro:IPR004507"
                     /db_xref="InterPro:IPR032901"
                     /db_xref="InterPro:IPR036551"
                     /db_xref="SubtiList:BG12023"
                     /db_xref="UniProtKB/Swiss-Prot:P94404"
                     /translation="MKAEFKRKGGGKVKLVVGMTGATGAIFGVRLLQWLKAAGVETHL
                     VVSPWANVTIKHETGYTLQEVEQLATYTYSHKDQAAAISSGSFDTDGMIVAPCSMKSL
                     ASIRTGMADNLLTRAADVMLKERKKLVLLTRETPLNQIHLENMLALTKMGTIILPPMP
                     AFYNRPRSLEEMVDHIVFRTLDQFGIRLPEAKRWNGIEKQKGGA*"
                     /label="ubiX CDS"
     gene            394107..394721
                     /gene="ubiX"
                     /locus_tag="BSU_03630"
                     /old_locus_tag="BSU03630"
                     /label="ubiX gene"
     promotor_-35    complement(394119..394126)
                     /Source="Nicolas_upshift_promotors"
                     /id="U277"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.978021978021978"
                     /psig="0.985014985014985"
                     /xcortree=1966
                     /SigmaFactorBS="cgagtttcactttgccccctcctttaCGCTTGAAttctgctt
                     tcattTCAATCATACTCCTGATATAtccatatgaaaaatatctattaaatctataatt
                     a"
                     /listShort="yclA"
                     /listLong="tcyA, tcyB, tcyC"
                     /label="promotor_-35"
     CDS             394724..396145
                     /gene="bsdC"
                     /locus_tag="BSU_03640"
                     /old_locus_tag="BSU03640"
                     /EC_number="4.1.1.61"
                     /EC_number="4.1.1.-"
                     /function="3.2: Degradation"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 1b: Function from experimental evidences
                     in the studied species; PubMedId: 11029449, 15979273,
                     17295427, 18388975, 26658822, 26337367; Product type e :
                     enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="promiscuous phenolic acid decarboxylase
                     subunit;1,4-dihydroxy-2-naphtoate-heptaprenyl
                     diphosphatedecarboxylase"
                     /protein_id="NP_388246.1"
                     /db_xref="EnsemblGenomes-Gn:BSU03640"
                     /db_xref="EnsemblGenomes-Tr:CAB12158"
                     /db_xref="GOA:P94405"
                     /db_xref="InterPro:IPR002830"
                     /db_xref="InterPro:IPR012349"
                     /db_xref="InterPro:IPR032902"
                     /db_xref="SubtiList:BG12024"
                     /db_xref="UniProtKB/Swiss-Prot:P94405"
                     /translation="MAYQDFREFLAALEKEGQLLTVNEEVKPEPDLGASARAASNLGD
                     KSPALLFNNIYGYHNARIAMNVIGSWPNHAMMLGMPKDTPVKEQFFEFAKRYDQFPMP
                     VKREETAPFHENEITEDINLFDILPLFRINQGDGGYYLDKACVISRDLEDPDNFGKQN
                     VGIYRMQVKGKDRLGIQPVPQHDIAIHLRQAEERGINLPVTIALGCEPVITTAASTPL
                     LYDQSEYEMAGAIQGEPYRIVKSKLSDLDVPWGAEVVLEGEIIAGEREYEGPFGEFTG
                     HYSGGRSMPIIKIKRVYHRNNPIFEHLYLGMPWTECDYMIGINTCVPLYQQLKEAYPN
                     EIVAVNAMYTHGLIAIVSTKTRYGGFAKAVGMRALTTPHGLGYCKMVIVVDEDVDPFN
                     LPQVMWALSTKMHPKHDAVIIPDLSVLPLDPGSNPSGITHKMILDATTPVAPETRGHY
                     SQPLDSPLTTKEWEQKLMDLMNK*"
                     /label="bsdC CDS"
     gene            394724..396145
                     /gene="bsdC"
                     /locus_tag="BSU_03640"
                     /old_locus_tag="BSU03640"
                     /label="bsdC gene"
     CDS             396162..396389
                     /gene="bsdD"
                     /locus_tag="BSU_03651"
                     /old_locus_tag="BSU03651"
                     /EC_number="4.1.1.91"
                     /EC_number="4.1.1.-"
                     /EC_number="4.1.1.61"
                     /function="3.2: Degradation"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 1b: Function from experimental evidences
                     in the studied species; PubMedId: 15979273, 17295427,
                     18388975, 26658822; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="phenolic acid decarboxylase subunit"
                     /protein_id="YP_003097675.1"
                     /db_xref="EnsemblGenomes-Gn:BSU03651"
                     /db_xref="EnsemblGenomes-Tr:CAX52546"
                     /db_xref="GOA:C0H3U9"
                     /db_xref="UniProtKB/Swiss-Prot:C0H3U9"
                     /translation="MHTCPRCDSKKGEVMSKSPVEGAWEVYQCQTCFFTWRSCEPESI
                     TNPEKYNPAFKIDPKETETAIEVPAVPERKA*"
                     /label="bsdD CDS"
     gene            396162..396389
                     /gene="bsdD"
                     /locus_tag="BSU_03651"
                     /old_locus_tag="BSU03651"
                     /label="bsdD gene"
     CDS             396386..396850
                     /gene="yclD"
                     /locus_tag="BSU_03652"
                     /old_locus_tag="BSU03652"
                     /function="16.11: Scavenge (Catabolism)"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 15979273, 18388975;
                     Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative FMN-binding enzyme subunit"
                     /protein_id="NP_388247.2"
                     /db_xref="EnsemblGenomes-Gn:BSU03652"
                     /db_xref="EnsemblGenomes-Tr:CAB12159"
                     /db_xref="GOA:C0SPB5"
                     /db_xref="InterPro:IPR012349"
                     /db_xref="SubtiList:BG12025"
                     /db_xref="UniProtKB/Swiss-Prot:C0SPB5"
                     /translation="MIRVNCMSDRLFELLDGSCLNEKQHEAFVLQTVSEDGWPHAAMI
                     SAGEIIALSRTDIRIALWKNTMTSANILRTGKAQFTAWWKGAAYYVKLECAPLPPLKD
                     AEYERDRFSCRIVSVKEDVAKYADLTSGVRIQLHSPEEVLSRWKKTLEDLKR*"
                     /label="yclD CDS"
     gene            396386..396850
                     /gene="yclD"
                     /locus_tag="BSU_03652"
                     /old_locus_tag="BSU03652"
                     /label="yclD gene"
     downshifts      396831
                     /Source="Nicolas_upshifts"
                     /id="D158"
                     /incds=0
                     /nref=1
                     /ntot=4
                     /MaxReadThrough="3.32586"
                     /MaxDrop="3.88166"
                     /score="45.8937489"
                     /energy="-15.1"
                     /TU="NA"
                     /idTUdmin="U278"
                     /TUdmin=0
                     /isTUend="TRUE"
                     /label="downshifts"
     misc_feature    396857..396858
                     /Source="Nicolas_upshift_promotors"
                     /id="U279"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.357642357642358"
                     /psig="0.557442557442557"
                     /xcortree=3132
                     /SigmaFactorBS="ctgaagaggtgctgagcagatggaaaaagaccctggaagatt
                     taaaacggtaatatcgaTAgcctgacgccatgcgtcaggctttttttatataatgaaa
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_single_box"
                     /note="Geneious type: promotor_single_box"
     upshifts        396858
                     /Source="Nicolas_upshifts"
                     /id="U279"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.357642357642358"
                     /psig="0.557442557442557"
                     /xcortree=3132
                     /SigmaFactorBS="ctgaagaggtgctgagcagatggaaaaagaccctggaagatt
                     taaaacggtaatatcgaTAgcctgacgccatgcgtcaggctttttttatataatgaaa
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             396917..397762
                     /gene="yclE"
                     /locus_tag="BSU_03660"
                     /old_locus_tag="BSU03660"
                     /function="16.6: Maintain"
                     /function="16.11: Scavenge (Catabolism)"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative hydrolase"
                     /protein_id="NP_388248.2"
                     /db_xref="EnsemblGenomes-Gn:BSU03660"
                     /db_xref="EnsemblGenomes-Tr:CAB12160"
                     /db_xref="GOA:P94407"
                     /db_xref="InterPro:IPR000073"
                     /db_xref="InterPro:IPR029058"
                     /db_xref="SubtiList:BG12026"
                     /db_xref="UniProtKB/Swiss-Prot:P94407"
                     /translation="MERAGICHSDGFDLAYRIEGEGAPILVIGSAVYYPRLFSSDIKQ
                     KYQWVFVDHRGFAKPKRELRAEDSRLDAVLADIERMRTFLQLEDVTILGHSGHAFMAL
                     EYARTYPKQVRKVALFNTAPDNSEERQRKSESFFMETASLERKKRFEKDIENLPQDID
                     KDPERRFVHMCIRAEAKSFYQERPHAAALWDGVFTNMPIIDELWGNTFARIDLLQRLA
                     DVRMPVYIGLGRYDYLVAPVSLWDAVDGLYPHVDKVIFEKSGHQPMLEEPEAFDQSFR
                     KWLDQ*"
                     /label="yclE CDS"
     gene            396917..397762
                     /gene="yclE"
                     /locus_tag="BSU_03660"
                     /old_locus_tag="BSU03660"
                     /label="yclE gene"
     CDS             complement(397802..399280)
                     /gene="dtpT"
                     /locus_tag="BSU_03670"
                     /old_locus_tag="BSU03670"
                     /function="16.1: Circulate"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 2a: Function from experimental evidences
                     in other organisms; PubMedId: 8458848, 11717292, 15849754,
                     16204487, 16850406, 17496096, 23144141, 25966844; Product
                     type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="di-tripeptide-proton ABC symporter"
                     /protein_id="NP_388249.2"
                     /db_xref="EnsemblGenomes-Gn:BSU03670"
                     /db_xref="EnsemblGenomes-Tr:CAB12175"
                     /db_xref="GOA:P94408"
                     /db_xref="InterPro:IPR000109"
                     /db_xref="InterPro:IPR005279"
                     /db_xref="InterPro:IPR018456"
                     /db_xref="InterPro:IPR020846"
                     /db_xref="InterPro:IPR036259"
                     /db_xref="SubtiList:BG12027"
                     /db_xref="UniProtKB/Swiss-Prot:P94408"
                     /translation="MASIDNESIIKSVPQKGFFGHPRGLFTLFFTEFWERFSYYGMRA
                     ILLYYLYTETVNGGLGFDKGTAVAIMSIYGSLVYMSTIIGGWLADRVFGTANTVFYGG
                     IFIMFGHIALAYPGSSIAFYISMVLIIVGTGLLKPNVSSVVGDLYTKEDPRRDSGFSI
                     FYMGINLGGLLAPLIVGTLGQKYNYHLGFGAAAVGMLLGLIVFALTRKKNLGLAGSNV
                     PNPLSKKSAIGTGIGVIIVAIAVIISVQTGVLTIKRFIDLVSILGILIPVIYFIIMFT
                     SKKADKTEKSRLAAYVPLFIGAVMFWAIQEQGATILAVYADERIRLSLGGFELQSSWF
                     QSLNPLFVVIFAPIFAWLWMKLGKRQPSTPVKFSIGIILAGLSFIIMVFPAMQGKEAL
                     VSPLWLVLSFLLVVLGELCLSPVGLSVTTKLAPAAFSAQTMSMWFLTNAAAQAINAQV
                     AGLFDKIPETMYFGTIGLISIVLGGILLLLSPVIKRAMKGVL*"
                     /label="dtpT CDS"
     gene            complement(397802..399280)
                     /gene="dtpT"
                     /locus_tag="BSU_03670"
                     /old_locus_tag="BSU03670"
                     /label="dtpT gene"
     downshifts      complement(397810)
                     /Source="Nicolas_upshifts"
                     /id="D159"
                     /incds=0
                     /nref=17
                     /ntot=90
                     /MaxReadThrough="1.40624"
                     /MaxDrop="3.91827"
                     /score="43.5753464"
                     /energy="-21"
                     /TU="NA"
                     /idTUdmin="U281"
                     /TUdmin=0
                     /isTUend="TRUE"
                     /label="downshifts"
     promotor_-35    399307..399309
                     /Source="Nicolas_upshift_promotors"
                     /id="U280"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.257742257742258"
                     /psig="0.581418581418581"
                     /xcortree=1444
                     /SigmaFactorBS="ctttcgttatcaatcgaagccatgtcagccaaaccctttcta
                     aaaaaagTGTattataaaaatcatatTCTTATATAATACTTGTGTcaatataatttat
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    complement(399308..399327)
                     /Source="Nicolas_upshift_promotors"
                     /id="U281"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.936063936063936"
                     /psig="0.97002997002997"
                     /xcortree=1442
                     /SigmaFactorBS="tttttccaatatggaactatttgaaatgagtataaattaTAT
                     TGACAcaagtattatataaGAATATGATTTTTATAATACactttttttagaaagggtt
                     t"
                     /listShort="dtpT"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        399318
                     /Source="Nicolas_upshifts"
                     /id="U280"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.257742257742258"
                     /psig="0.581418581418581"
                     /xcortree=1444
                     /SigmaFactorBS="ctttcgttatcaatcgaagccatgtcagccaaaccctttcta
                     aaaaaagTGTattataaaaatcatatTCTTATATAATACTTGTGTcaatataatttat
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-10    399326..399344
                     /Source="Nicolas_upshift_promotors"
                     /id="U280"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.257742257742258"
                     /psig="0.581418581418581"
                     /xcortree=1444
                     /SigmaFactorBS="ctttcgttatcaatcgaagccatgtcagccaaaccctttcta
                     aaaaaagTGTattataaaaatcatatTCTTATATAATACTTGTGTcaatataatttat
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(399328)
                     /Source="Nicolas_upshifts"
                     /id="U281"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.936063936063936"
                     /psig="0.97002997002997"
                     /xcortree=1442
                     /SigmaFactorBS="tttttccaatatggaactatttgaaatgagtataaattaTAT
                     TGACAcaagtattatataaGAATATGATTTTTATAATACactttttttagaaagggtt
                     t"
                     /listShort="dtpT"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     S_feature       complement(399330..399834)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_417763_418267_c"
                     /HighExp="S3, S4, LoTm, S5, S6, T5.0H, T4.0H, M9-stat, S8,
                     T3.30H"
                     /AntisenseName="yclG"
                     /AntisenseCor="0.33937447534762299"
                     /AntisenseRegPval="-7.9"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigEF"
                     /TUshortPSig=1
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S128"
     promotor_-35    complement(399342..399349)
                     /Source="Nicolas_upshift_promotors"
                     /id="U281"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.936063936063936"
                     /psig="0.97002997002997"
                     /xcortree=1442
                     /SigmaFactorBS="tttttccaatatggaactatttgaaatgagtataaattaTAT
                     TGACAcaagtattatataaGAATATGATTTTTATAATACactttttttagaaagggtt
                     t"
                     /listShort="dtpT"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-35    399498..399507
                     /Source="Nicolas_upshift_promotors"
                     /id="U282"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp="0.998001998001998"
                     /psig="0.998001998001998"
                     /xcortree=1425
                     /SigmaFactorBS="attcctttatatttttttaataaaattttagagaaatGTACA
                     AGCAGatcgggcctttgTGAGTAACATGATAGTAATCatagagaaggaggctcgcaat
                     t"
                     /listShort="yclG"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    399520..399539
                     /Source="Nicolas_upshift_promotors"
                     /id="U282"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp="0.998001998001998"
                     /psig="0.998001998001998"
                     /xcortree=1425
                     /SigmaFactorBS="attcctttatatttttttaataaaattttagagaaatGTACA
                     AGCAGatcgggcctttgTGAGTAACATGATAGTAATCatagagaaggaggctcgcaat
                     t"
                     /listShort="yclG"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        399521
                     /Source="Nicolas_upshifts"
                     /id="U282"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp="0.998001998001998"
                     /psig="0.998001998001998"
                     /xcortree=1425
                     /SigmaFactorBS="attcctttatatttttttaataaaattttagagaaatGTACA
                     AGCAGatcgggcctttgTGAGTAACATGATAGTAATCatagagaaggaggctcgcaat
                     t"
                     /listShort="yclG"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             399560..401314
                     /gene="yclG"
                     /locus_tag="BSU_03680"
                     /old_locus_tag="BSU03680"
                     /function="16.11: Scavenge (Catabolism)"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative uronase"
                     /protein_id="NP_388250.1"
                     /db_xref="EnsemblGenomes-Gn:BSU03680"
                     /db_xref="EnsemblGenomes-Tr:CAB12176"
                     /db_xref="InterPro:IPR006626"
                     /db_xref="InterPro:IPR006633"
                     /db_xref="InterPro:IPR011050"
                     /db_xref="InterPro:IPR012334"
                     /db_xref="InterPro:IPR024535"
                     /db_xref="SubtiList:BG12028"
                     /db_xref="UniProtKB/Swiss-Prot:P94409"
                     /translation="MAEFILNAADFGVPRDGKTDSTERINQCLSTAVSKGYHTVWFPK
                     GTYLIDATLGGDLNQRFRNAGIIVPGNLEIMMDPECIMKVIPNSSWGYSAFYVGKQEN
                     ITISGGQIIGERDEHTYASAGIRSTHEWGFGICIEGCSNVVIDDVKISDFTGDGIIVS
                     PRGLKTNQDYRTSEQIIIRRCEVRRSRRNNISITGCDMVTVEECLIEDAGTGNGTAPK
                     FGIDIEGYGEGDVDYEEPINVSIRNNHFVGNVSSSVTNFNGYGILIEGNHSDNTISYG
                     YGTQTVIKGNILRRPEDAAAAPRVGITGLGVSQGKETSDAVIAGNLITGFSTGIDVRG
                     KSVLVTNNKISNFENTGILVYQSSDVKVDGNQIQNGLSETRRSIGLRAVLSDDIAFLN
                     NCLIQVVDGVNVSGGNMIIKDNLLRKFSRGIWIAQGNAVIEGNTLNPDAFEAVPESYS
                     VSVTNNAGAIIKNNTFKEFKNYPIYCSTSAKTSIIGNHLERSPLLVTIYISAGVHEIF
                     DNTISVNRTAGNPIVIYLNGSAGSIISGNTINNLSAGTATAIQTNTSTNSKIIGNRIF
                     KGTINKHSSDTIDGNMIV*"
                     /label="yclG CDS"
     gene            399560..401314
                     /gene="yclG"
                     /locus_tag="BSU_03680"
                     /old_locus_tag="BSU03680"
                     /label="yclG gene"
     promotor_-10    complement(399831..399849)
                     /Source="Nicolas_upshift_promotors"
                     /id="U283"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp=1
                     /psig=1
                     /xcortree=1003
                     /SigmaFactorBS="atcccgttcgccgataatttgtcctccggaaataGTTATAtt
                     ctcttgcttgcctACATAAAATGCGGAATAACcccacgaactattcggtatcactttc
                     a"
                     /listShort="S128, dtpT"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(399844)
                     /Source="Nicolas_upshifts"
                     /id="U283"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp=1
                     /psig=1
                     /xcortree=1003
                     /SigmaFactorBS="atcccgttcgccgataatttgtcctccggaaataGTTATAtt
                     ctcttgcttgcctACATAAAATGCGGAATAACcccacgaactattcggtatcactttc
                     a"
                     /listShort="S128, dtpT"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(399865..399870)
                     /Source="Nicolas_upshift_promotors"
                     /id="U283"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp=1
                     /psig=1
                     /xcortree=1003
                     /SigmaFactorBS="atcccgttcgccgataatttgtcctccggaaataGTTATAtt
                     ctcttgcttgcctACATAAAATGCGGAATAACcccacgaactattcggtatcactttc
                     a"
                     /listShort="S128, dtpT"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     downshifts      401305
                     /Source="Nicolas_upshifts"
                     /id="D160"
                     /incds=0
                     /nref=6
                     /ntot=21
                     /MaxReadThrough="0.325519999999999"
                     /MaxDrop="4.9689"
                     /score="4.29139266"
                     /energy="-5.4"
                     /TU="NA"
                     /idTUdmin="U282"
                     /TUdmin=7
                     /isTUend="TRUE"
                     /label="downshifts"
     CDS             complement(401330..401551)
                     /gene="yczF"
                     /locus_tag="BSU_03690"
                     /old_locus_tag="BSU03690"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved protein of unknown function"
                     /protein_id="NP_388251.1"
                     /db_xref="EnsemblGenomes-Gn:BSU03690"
                     /db_xref="EnsemblGenomes-Tr:CAB12177"
                     /db_xref="GOA:O31479"
                     /db_xref="SubtiList:BG12780"
                     /db_xref="UniProtKB/Swiss-Prot:O31479"
                     /translation="MKILGVTGFILICLLAISVLMDMLQGFSLTKAVYNNMSSFKMTT
                     FAEWVVLLFFVLVLVREMYVIYKSKKKNP*"
                     /label="yczF CDS"
     gene            complement(401330..401551)
                     /gene="yczF"
                     /locus_tag="BSU_03690"
                     /old_locus_tag="BSU03690"
                     /label="yczF gene"
     promotor_-10    complement(401570..401581)
                     /Source="Nicolas_upshift_promotors"
                     /id="U284"
                     /multdbtbs="-"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp=1
                     /psig=1
                     /xcortree=857
                     /SigmaFactorBS="aaattgagattatgcattagggttagatgcGGTATAActtct
                     ccgccaaagATAGACACTAAAagcggaggatgatgaagcatgaagatattgggcgtga
                     c"
                     /listShort="yczF"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(401572)
                     /Source="Nicolas_upshifts"
                     /id="U284"
                     /multdbtbs="-"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp=1
                     /psig=1
                     /xcortree=857
                     /SigmaFactorBS="aaattgagattatgcattagggttagatgcGGTATAActtct
                     ccgccaaagATAGACACTAAAagcggaggatgatgaagcatgaagatattgggcgtga
                     c"
                     /listShort="yczF"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(401596..401602)
                     /Source="Nicolas_upshift_promotors"
                     /id="U284"
                     /multdbtbs="-"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp=1
                     /psig=1
                     /xcortree=857
                     /SigmaFactorBS="aaattgagattatgcattagggttagatgcGGTATAActtct
                     ccgccaaagATAGACACTAAAagcggaggatgatgaagcatgaagatattgggcgtga
                     c"
                     /listShort="yczF"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-35    401617..401623
                     /Source="Nicolas_upshift_promotors"
                     /id="U285"
                     /multdbtbs="SigG"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp=1
                     /psig=1
                     /xcortree=903
                     /SigmaFactorBS="gagaagttataccgcatctaaccctaaTGCATAAtctcaatt
                     ttaaaAGGAAGAATATGagaaaacgacaaggaaaggtatttgtgtatgcctttatttt
                     c"
                     /listShort="gerKA, gerKC"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    401637..401648
                     /Source="Nicolas_upshift_promotors"
                     /id="U285"
                     /multdbtbs="SigG"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp=1
                     /psig=1
                     /xcortree=903
                     /SigmaFactorBS="gagaagttataccgcatctaaccctaaTGCATAAtctcaatt
                     ttaaaAGGAAGAATATGagaaaacgacaaggaaaggtatttgtgtatgcctttatttt
                     c"
                     /listShort="gerKA, gerKC"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        401650
                     /Source="Nicolas_upshifts"
                     /id="U285"
                     /multdbtbs="SigG"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp=1
                     /psig=1
                     /xcortree=903
                     /SigmaFactorBS="gagaagttataccgcatctaaccctaaTGCATAAtctcaatt
                     ttaaaAGGAAGAATATGagaaaacgacaaggaaaggtatttgtgtatgcctttatttt
                     c"
                     /listShort="gerKA, gerKC"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             401677..403311
                     /gene="gerKA"
                     /locus_tag="BSU_03700"
                     /old_locus_tag="BSU03700"
                     /function="16.5: Explore"
                     /experiment="publication(s) with functional evidences,
                     PMID:10762253, 16707705, 16740944"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 10762253, 16707705,
                     16740944; Product type cp: cell process"
                     /codon_start=1
                     /transl_table=11
                     /product="spore germination receptor subunit"
                     /protein_id="NP_388252.1"
                     /db_xref="EnsemblGenomes-Gn:BSU03700"
                     /db_xref="EnsemblGenomes-Tr:CAB12178"
                     /db_xref="GOA:P49939"
                     /db_xref="InterPro:IPR004995"
                     /db_xref="SubtiList:BG11392"
                     /db_xref="UniProtKB/Swiss-Prot:P49939"
                     /translation="MPLFSKRKNNTDSKDKQNTDERNQEQQQEKERPVLISPSLAKNI
                     AETKKEVGSSSDVIIREIKIGEQDHVHLAVIYISGLVDNNTIHESLIDPLVQDESIQN
                     THAIQQILEKTLPLGGVKAEKSWDKLFSELMLGNALIFADGHDEALICSTQGGEQRSI
                     QEPSTQVSFRGPRQGFTESLQTNISMIRRYIKNPNLWVEKMKKGSVTNTDIALMYIQG
                     ICDEKVLKEVKQRLEKIDIDSILESGYIEQLIEDETFTTFPTMYHTERPDVVAGNLLE
                     GRFAIIVDGTPFVLIAPALFVQFFQSVEDYYSRFDIATSIRILRVLVFFISLVAPAVY
                     VAATTFHQEMIPTQLLVVIAAQREIVPFPAVVEALTMEVAFEILREAGVRLPRVVGSA
                     VSIVGALVIGQAAVQAGIVSPAMVIIVALTAIASFATPAFAMAISARLIRFIFIIASA
                     VMGFYGLILGIIMMFVHLCSLRSFGVPYMSPLAPFSSQGVKDALFRVPWWADEKRPES
                     VSKEDKVRQGKDQRPEPAASRGMVNKDLEEGDQNGT*"
                     /label="gerKA CDS"
     gene            401677..403311
                     /gene="gerKA"
                     /locus_tag="BSU_03700"
                     /old_locus_tag="BSU03700"
                     /label="gerKA gene"
     CDS             403301..404524
                     /gene="gerKC"
                     /locus_tag="BSU_03710"
                     /old_locus_tag="BSU03710"
                     /function="16.5: Explore"
                     /experiment="publication(s) with functional evidences,
                     PMID:10762253, 16707705, 16740944, 19363077"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 10762253, 16707705,
                     16740944, 19363077; Product type cp: cell process"
                     /codon_start=1
                     /transl_table=11
                     /product="spore germination receptor subunit"
                     /protein_id="NP_388253.1"
                     /db_xref="EnsemblGenomes-Gn:BSU03710"
                     /db_xref="EnsemblGenomes-Tr:CAB12179"
                     /db_xref="GOA:P49941"
                     /db_xref="InterPro:IPR008844"
                     /db_xref="SubtiList:BG11394"
                     /db_xref="UniProtKB/Swiss-Prot:P49941"
                     /translation="MVRKCLLAVLMLLSVIVLPGCWDKRELTDLAIISAIGIDRTNDS
                     NYVLHLQIINPGNVAGGLQGGGAGDRPPVSVYSIEGNNITEALRKASMKVSRRLYFAH
                     TNLVVINEKLAKEEGLDFVLDNLDRDTEFRTTATFVVAHKTKAENIVKILTPIDKIPS
                     NKVNKTLDFTEAQYGRVVKINIQDVLKTLAANTMAPVIPGYMMIGDDKKGVSMENTQA
                     TDPKAILQADGLAVFDKAGYLKYWLEDDESVGAVWLMNKIQHTFINADWGKTKDAVSL
                     QVTHQDTKLVPKMRNGRPYIHVKVSVEGIIDAVKYPFQLSDPKVLAAIEKALNKELEK
                     EISHTVKKIKKNKIDFIGFGDTIYRKYPEQWEKMKDTWDKEYLPELPIDVKAETYIRR
                     TGLRNNPIKHQFKDD*"
                     /label="gerKC CDS"
     gene            403301..404524
                     /gene="gerKC"
                     /locus_tag="BSU_03710"
                     /old_locus_tag="BSU03710"
                     /label="gerKC gene"
     CDS             404549..405670
                     /gene="gerKB"
                     /locus_tag="BSU_03720"
                     /old_locus_tag="BSU03720"
                     /function="16.5: Explore"
                     /experiment="publication(s) with functional evidences,
                     PMID:10762253, 15849754, 16707705, 16740944, 16850406,
                     19363077"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 10762253, 15849754,
                     16707705, 16740944, 16850406, 19363077; Product type cp :
                     cell process"
                     /codon_start=1
                     /transl_table=11
                     /product="spore germination receptor subunit"
                     /protein_id="NP_388254.1"
                     /db_xref="EnsemblGenomes-Gn:BSU03720"
                     /db_xref="EnsemblGenomes-Tr:CAB12180"
                     /db_xref="GOA:P49940"
                     /db_xref="InterPro:IPR004761"
                     /db_xref="SubtiList:BG11393"
                     /db_xref="UniProtKB/Swiss-Prot:P49940"
                     /translation="MEKARISIRQLFVMIIIFELGSSLLITPGSMAGRDAWIAVLLGC
                     AIGLFLFYLYQGIYQCYPNSSPKEYMDDMLGTKLSWLFSFLYILYFAYIAARVLRDFG
                     EMLLTFAYHDTPIIIVNALLMVVSIYAVRKGIEVLARAAELLFGAMYLLGAIGLVLII
                     VSGTIDPHNLKPVLANGISPVLHSVFTQTMYVPFGEVVLFVMIFPNLNDRKDVKKMGM
                     IAMAISGLIVALTVAINISVLDVDLTLRSQFPLLSTIQTIKVEEFLDRLDVFFMLALI
                     IGGFFKVSLYLYATVVGTSTLFKEKNPSQLAYPMGLGILILSITIATNFSEHLNEGLN
                     VVPLYIHLPFQLLFPLFLFIVAVWKKKRREKSKGEEAKK*"
                     /label="gerKB CDS"
     gene            404549..405670
                     /gene="gerKB"
                     /locus_tag="BSU_03720"
                     /old_locus_tag="BSU03720"
                     /label="gerKB gene"
     downshifts      405654
                     /Source="Nicolas_upshifts"
                     /id="D161"
                     /incds=0
                     /nref=6
                     /ntot=58
                     /MaxReadThrough="2.55658"
                     /MaxDrop="3.73002"
                     /score="3.39927899"
                     /energy="-10.5"
                     /TU="NA"
                     /idTUdmin="U285"
                     /TUdmin=2200
                     /isTUend="FALSE"
                     /label="downshifts"
     CDS             complement(405775..406455)
                     /gene="yclH"
                     /locus_tag="BSU_03730"
                     /old_locus_tag="BSU03730"
                     /function="16.1: Circulate"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="putative ABC transporter (ATPase component)"
                     /protein_id="NP_388255.1"
                     /db_xref="EnsemblGenomes-Gn:BSU03730"
                     /db_xref="EnsemblGenomes-Tr:CAB12181"
                     /db_xref="GOA:P94411"
                     /db_xref="InterPro:IPR003439"
                     /db_xref="InterPro:IPR003593"
                     /db_xref="InterPro:IPR027417"
                     /db_xref="SubtiList:BG12029"
                     /db_xref="UniProtKB/Swiss-Prot:P94411"
                     /translation="MSLLQFQQVGYWYKNKSQPLFQDINISFQKGKFYTIVGTSGTGK
                     TTFLSLAGGLDAPKEGNILYDGKAVSKIGLTNFRNQYVSIVFQAYNLLPYMTALQNVT
                     TAMEITGSKEKNKESYALDMLQKVGINEKQARQKVLTLSGGQQQRVSITRAFCCDTDL
                     IVADEPTGNLDEDTSKEIVRLFQDLAHKEDKCVIMVTHDEQIAKVSDINIRLSRGSFT
                     VKENVAVV*"
                     /label="yclH CDS"
     gene            complement(405775..406455)
                     /gene="yclH"
                     /locus_tag="BSU_03730"
                     /old_locus_tag="BSU03730"
                     /label="yclH gene"
     CDS             complement(406471..407931)
                     /gene="yclI"
                     /locus_tag="BSU_03740"
                     /old_locus_tag="BSU03740"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="putative transporter"
                     /protein_id="NP_388256.2"
                     /db_xref="EnsemblGenomes-Gn:BSU03740"
                     /db_xref="EnsemblGenomes-Tr:CAB12182"
                     /db_xref="GOA:P94412"
                     /db_xref="InterPro:IPR003838"
                     /db_xref="InterPro:IPR025857"
                     /db_xref="SubtiList:BG12030"
                     /db_xref="UniProtKB/Swiss-Prot:P94412"
                     /translation="MNFIKRAFWNMKAKKGKTLLQLFVFTVICVFVLSGLAIQSAAQK
                     SSELARQELGGSVTLQVDRQKQMEKQQDSGEKRSFESTPIKVSDANKLAALDHVKSYN
                     YTTSASANAGNFDAIESSSSSDSSSSSSSSNAKNSQGGGQGGPQMVQADLSIEGVIST
                     ALVDDFSDGDSKITDGRAITKSDVGKKVTVINETLAEENDLSVGDSITIESATDEDTT
                     VKLKIVGIYKTTSSGDDQAQNFSFLNPYNKLYTPYTATAALKGDDYKNTIDSAVYYMD
                     DAKNMDTFVKAAKKTSIDFDTYTLNTNDQLYQQMVGPIENVASFSKNVVYLVSVAGAV
                     ILGLIVMMSIRERKYEMGVLMAIGEKRWKLIGQFLTEILIVAVIAIGLASVTGNLVAN
                     QLGNQLLSQQISSSTDSTQTASGQMPGGGGGMGGKMFGHSSSNVDVIDSLNVAVSMND
                     MLILGGIGILIAIIATLLPSISVLRLHPKTILTKQE*"
                     /label="yclI CDS"
     gene            complement(406471..407931)
                     /gene="yclI"
                     /locus_tag="BSU_03740"
                     /old_locus_tag="BSU03740"
                     /label="yclI gene"
     misc_feature    408101..408120
                     /Source="Nicolas_upshift_promotors"
                     /id="U286"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.647352647352647"
                     /psig="0.962037962037962"
                     /xcortree=1584
                     /SigmaFactorBS="tctagttgatgaaataaaaactaacaattgtgaaacgcaaaa
                     ccttctgtttaaaatGGTGCTATTATATAAAAAAGcatcaaaacaaccggaggatata
                     a"
                     /listShort="yclJ, yclK, S129, rapC, phrC"
                     /GFF_Attribute="listLong"
                     /label="promotor_single_box"
                     /note="Geneious type: promotor_single_box"
     upshifts        408104
                     /Source="Nicolas_upshifts"
                     /id="U286"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.647352647352647"
                     /psig="0.962037962037962"
                     /xcortree=1584
                     /SigmaFactorBS="tctagttgatgaaataaaaactaacaattgtgaaacgcaaaa
                     ccttctgtttaaaatGGTGCTATTATATAAAAAAGcatcaaaacaaccggaggatata
                     a"
                     /listShort="yclJ, yclK, S129, rapC, phrC"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             408144..408827
                     /gene="yclJ"
                     /locus_tag="BSU_03750"
                     /old_locus_tag="BSU03750"
                     /function="16.10: Respire"
                     /function="16.3: Control"
                     /experiment="publication(s) with functional evidences,
                     PMID:11717295, 15375128, 20512483"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 11717295, 15375128,
                     20512483; Product type r: regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="two-component response regulator [YclK]
                     (possibly involved in arabinogalactan metabolism)"
                     /protein_id="NP_388257.1"
                     /db_xref="EnsemblGenomes-Gn:BSU03750"
                     /db_xref="EnsemblGenomes-Tr:CAB12183"
                     /db_xref="GOA:P94413"
                     /db_xref="InterPro:IPR001789"
                     /db_xref="InterPro:IPR001867"
                     /db_xref="InterPro:IPR011006"
                     /db_xref="InterPro:IPR016032"
                     /db_xref="InterPro:IPR036388"
                     /db_xref="SubtiList:BG12031"
                     /db_xref="UniProtKB/Swiss-Prot:P94413"
                     /translation="MKILMIEDNVSVCTMTEMFFFKEGFEAEFVHDGLEGYQRFTEEN
                     WDLIILDIMLPSMDGVTICRKIRETSTVPIIMLTAKDTESDQVIGFEMGADDYVTKPF
                     SPLTLVARIKAVIRRYKATGKAVIDEDMIETECFTINKKTREVLLNGEPVENLTPKEF
                     DLLYYLVQNPRQVFSREQLLEQVWGYQFYGDERTVDVHIKRLRKKLASEDKPFLYTVW
                     GVGYKFDED*"
                     /label="yclJ CDS"
     gene            408144..408827
                     /gene="yclJ"
                     /locus_tag="BSU_03750"
                     /old_locus_tag="BSU03750"
                     /label="yclJ gene"
     CDS             408814..410235
                     /gene="yclK"
                     /locus_tag="BSU_03760"
                     /old_locus_tag="BSU03760"
                     /function="16.3: Control"
                     /function="16.10: Respire"
                     /function="16.12: Sense"
                     /experiment="publication(s) with functional evidences,
                     PMID:11717295, 15375128, 20512483"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 11717295, 15375128,
                     20512483; Product type rc: receptor"
                     /codon_start=1
                     /transl_table=11
                     /product="two-component sensor histidine kinase [YclJ]"
                     /protein_id="NP_388258.1"
                     /db_xref="EnsemblGenomes-Gn:BSU03760"
                     /db_xref="EnsemblGenomes-Tr:CAB12184"
                     /db_xref="GOA:P94414"
                     /db_xref="InterPro:IPR003594"
                     /db_xref="InterPro:IPR003660"
                     /db_xref="InterPro:IPR003661"
                     /db_xref="InterPro:IPR004358"
                     /db_xref="InterPro:IPR005467"
                     /db_xref="InterPro:IPR036097"
                     /db_xref="InterPro:IPR036890"
                     /db_xref="SubtiList:BG12032"
                     /db_xref="UniProtKB/Swiss-Prot:P94414"
                     /translation="MMKIKYLYQLLLSHISILILAFVIIISLFSHFVKEFAYQNKVEE
                     LTSYAVQIANEFQSGQVDMRRLYPYQDILSTRKTQFIIFNEEQQPYFLPEGFHHPPRE
                     QLKKSEWNKLKKGQTVTIRADGRFDDEVSLVAQPIFVQNEFKGAVLLISPISGVEQMV
                     NQVNLYMFYAVISTLVITILVSWLLSKFHVKRIQKLREATDKVASGDYDIHLENSYGD
                     EIGVLASDFNIMAKKLKQSRDEIERLEKRRRQFIADVSHELKTPLTTINGLVEGLNSH
                     TIPEDKKDKCFSLISEETKRMLRLVKENLDYEKIRSQQITLNKLDVPLIEVFEIVKEH
                     LQQQAEEKQNKLMIQVEDHVIVHADYDRFIQILVNITKNSIQFTQNGDIWLRGMEGYK
                     ETIIEIEDTGIGIPKEDIEHIWERFYKADISRTNTAYGEYGLGLSIVRQLVEMHQGTV
                     EIKSEEGKGTKFIIRLPLTAKQQ*"
                     /label="yclK CDS"
     gene            408814..410235
                     /gene="yclK"
                     /locus_tag="BSU_03760"
                     /old_locus_tag="BSU03760"
                     /label="yclK gene"
     downshifts      410211
                     /Source="Nicolas_upshifts"
                     /id="D162"
                     /incds=0
                     /nref=20
                     /ntot=169
                     /MaxReadThrough="3.43905"
                     /MaxDrop="4.91565"
                     /score="13.4599201"
                     /energy="-15"
                     /TU="U286"
                     /idTUdmin="U286"
                     /TUdmin="-1427"
                     /isTUend="FALSE"
                     /label="downshifts"
     S_feature       410256..410360
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_428689_428793"
                     /HighExp="Lbstat, nit, ferm, BI, M0t45, M40t45, M0t90, S0,
                     S2, Paraq"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.962"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S129"
     misc_feature    410350..410369
                     /Source="Nicolas_upshift_promotors"
                     /id="U287"
                     /multdbtbs="SigA"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.96903096903097"
                     /psig="0.986013986013986"
                     /xcortree=678
                     /SigmaFactorBS="tcccgaaaacaaagattgcgtgtttttcgggttgggacggcc
                     tataaaCATGATAAAATATGACATAAacagtttttgatgggagagggtgaaggaatga
                     a"
                     /listShort="rapC, phrC"
                     /GFF_Attribute="listLong"
                     /label="promotor_single_box"
                     /note="Geneious type: promotor_single_box"
     upshifts        410362
                     /Source="Nicolas_upshifts"
                     /id="U287"
                     /multdbtbs="SigA"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.96903096903097"
                     /psig="0.986013986013986"
                     /xcortree=678
                     /SigmaFactorBS="tcccgaaaacaaagattgcgtgtttttcgggttgggacggcc
                     tataaaCATGATAAAATATGACATAAacagtttttgatgggagagggtgaaggaatga
                     a"
                     /listShort="rapC, phrC"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     downshifts      complement(410394)
                     /Source="Nicolas_upshifts"
                     /id="D163"
                     /incds=0
                     /nref=2
                     /ntot=81
                     /MaxReadThrough="1.74985"
                     /MaxDrop="4.10695"
                     /score="1.47729412"
                     /energy="-10.3"
                     /TU="NA"
                     /idTUdmin="U290"
                     /TUdmin=1320
                     /isTUend="FALSE"
                     /label="downshifts"
     CDS             410398..411546
                     /gene="rapC"
                     /locus_tag="BSU_03770"
                     /old_locus_tag="BSU03770"
                     /function="16.3: Control"
                     /experiment="publication(s) with functional evidences,
                     PMID:10464187, 12456319, 12897006, 12950917, 15968044,
                     19202088"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 10464187, 12456319,
                     12897006, 12950917, 15968044, 19202088; Product type e :
                     enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator aspartate phosphatase"
                     /protein_id="NP_388259.1"
                     /db_xref="EnsemblGenomes-Gn:BSU03770"
                     /db_xref="EnsemblGenomes-Tr:CAB12185"
                     /db_xref="GOA:P94415"
                     /db_xref="InterPro:IPR011990"
                     /db_xref="InterPro:IPR013026"
                     /db_xref="InterPro:IPR019734"
                     /db_xref="SubtiList:BG11966"
                     /db_xref="UniProtKB/Swiss-Prot:P94415"
                     /translation="MKSGVIPSSAVGQKINEWYRYIRTFSVPDAEVLKAEIQQELKHM
                     QHDSNLLLYYSLMEFRHQLMLDYLEPLEKLNIEDQPSLSELSRNIDSNQADLKGLLDY
                     YVNFFRGMYEFDKREFISAITYYKQAEKKLSFVADHIERAEFYFKIAEAYYYMKQTYF
                     SLINIKNAYEIYVEQETYNVRIIQCHFVFGVNLMDERNFEQAARHFKLALNMAQAEQK
                     AQLVGRAYYNLGLCYYNQDLLDPAIDYFEKAVSTFESSRIVNSLPQAYFLITLIYYKQ
                     GKHDKASEYHKRGYEYAKETDDADYAVKFEFLQSLYLDQPNEEGIERCFQYLKNKNMY
                     ADIEDLALEVAKYYYEQKWFKLSASYFLQVEEARKQIQRSEGLYEIEI*"
                     /label="rapC CDS"
     gene            410398..411546
                     /gene="rapC"
                     /locus_tag="BSU_03770"
                     /old_locus_tag="BSU03770"
                     /label="rapC gene"
     promotor_-35    411246..411251
                     /Source="Nicolas_upshift_promotors"
                     /id="U288"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.776223776223776"
                     /psig="0.776223776223776"
                     /xcortree=1063
                     /SigmaFactorBS="caccctgatttattataaacagggaaaacatgataaagcttc
                     GGAATAtcacaagcggggctatGAATATGCTAAAGAAACAGacgatgcagactatgcc
                     g"
                     /listShort="phrC"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     upshifts        411264
                     /Source="Nicolas_upshifts"
                     /id="U288"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.776223776223776"
                     /psig="0.776223776223776"
                     /xcortree=1063
                     /SigmaFactorBS="caccctgatttattataaacagggaaaacatgataaagcttc
                     GGAATAtcacaagcggggctatGAATATGCTAAAGAAACAGacgatgcagactatgcc
                     g"
                     /listShort="phrC"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-10    411268..411286
                     /Source="Nicolas_upshift_promotors"
                     /id="U288"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.776223776223776"
                     /psig="0.776223776223776"
                     /xcortree=1063
                     /SigmaFactorBS="caccctgatttattataaacagggaaaacatgataaagcttc
                     GGAATAtcacaagcggggctatGAATATGCTAAAGAAACAGacgatgcagactatgcc
                     g"
                     /listShort="phrC"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     promotor_-35    411408..411416
                     /Source="Nicolas_upshift_promotors"
                     /id="U289"
                     /multdbtbs="SigH"
                     /comp="M1"
                     /sig="SigH"
                     /pcomp="0.753246753246753"
                     /psig="0.753246753246753"
                     /xcortree=788
                     /SigmaFactorBS="taaaaaataaaaatatgtacgctgatatAGAGGATTTagccc
                     tagaagTAGCAAAATATTACTATGAacagaaatggtttaaactgtctgcttcctactt
                     t"
                     /listShort="phrC"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    411428..411446
                     /Source="Nicolas_upshift_promotors"
                     /id="U289"
                     /multdbtbs="SigH"
                     /comp="M1"
                     /sig="SigH"
                     /pcomp="0.753246753246753"
                     /psig="0.753246753246753"
                     /xcortree=788
                     /SigmaFactorBS="taaaaaataaaaatatgtacgctgatatAGAGGATTTagccc
                     tagaagTAGCAAAATATTACTATGAacagaaatggtttaaactgtctgcttcctactt
                     t"
                     /listShort="phrC"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        411440
                     /Source="Nicolas_upshifts"
                     /id="U289"
                     /multdbtbs="SigH"
                     /comp="M1"
                     /sig="SigH"
                     /pcomp="0.753246753246753"
                     /psig="0.753246753246753"
                     /xcortree=788
                     /SigmaFactorBS="taaaaaataaaaatatgtacgctgatatAGAGGATTTagccc
                     tagaagTAGCAAAATATTACTATGAacagaaatggtttaaactgtctgcttcctactt
                     t"
                     /listShort="phrC"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             411530..411652
                     /gene="phrC"
                     /locus_tag="BSU_03780"
                     /old_locus_tag="BSU03780"
                     /function="16.3: Control"
                     /function="16.5: Explore"
                     /experiment="publication(s) with functional evidences,
                     PMID:10464187, 12456319, 12897006, 12950917, 16816200,
                     19202088"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 10464187, 12456319,
                     12897006, 12950917, 16816200, 19202088; Product type r :
                     regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="secreted regulator of the activity of
                     phosphatase RapC and competence and sporulation
                     stimulating factor (CSF)"
                     /protein_id="NP_388260.1"
                     /db_xref="EnsemblGenomes-Gn:BSU03780"
                     /db_xref="EnsemblGenomes-Tr:CAB12186"
                     /db_xref="GOA:P94416"
                     /db_xref="InterPro:IPR020243"
                     /db_xref="InterPro:IPR025899"
                     /db_xref="SubtiList:BG11959"
                     /db_xref="UniProtKB/Swiss-Prot:P94416"
                     /translation="MKLKSKLFVICLAAAAIFTAAGVSANAEALDFHVTERGMT*"
                     /label="phrC CDS"
     gene            411530..411652
                     /gene="phrC"
                     /locus_tag="BSU_03780"
                     /old_locus_tag="BSU03780"
                     /label="phrC gene"
     downshifts      411639
                     /Source="Nicolas_upshifts"
                     /id="D164"
                     /incds=0
                     /nref=260
                     /ntot=275
                     /MaxReadThrough="3.24518"
                     /MaxDrop="7.70367"
                     /score="26.3182765"
                     /energy="-14"
                     /TU="NA"
                     /idTUdmin="U286"
                     /TUdmin=1
                     /isTUend="TRUE"
                     /label="downshifts"
     downshifts      complement(411707)
                     /Source="Nicolas_upshifts"
                     /id="D165"
                     /incds=0
                     /nref=3
                     /ntot=64
                     /MaxReadThrough="0.60499"
                     /MaxDrop="7.4475"
                     /score="-1.25354129"
                     /energy="-15.8"
                     /TU="NA"
                     /idTUdmin="U290"
                     /TUdmin=7
                     /isTUend="TRUE"
                     /label="downshifts"
     CDS             complement(411752..411841)
                     /gene="yczM"
                     /locus_tag="BSU_03788"
                     /old_locus_tag="BSU03788"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 20156992, 21670523;
                     Product type f: factor"
                     /codon_start=1
                     /transl_table=11
                     /product="putative type I toxin"
                     /protein_id="YP_003097676.1"
                     /db_xref="EnsemblGenomes-Gn:BSU03788"
                     /db_xref="EnsemblGenomes-Tr:CAX52547"
                     /db_xref="GOA:C0H3V0"
                     /db_xref="InterPro:IPR010070"
                     /db_xref="UniProtKB/Swiss-Prot:C0H3V0"
                     /translation="MSGYGTSFALIVVLFILLIIVGTAFVGGY*"
                     /label="yczM CDS"
     gene            complement(411752..411841)
                     /gene="yczM"
                     /locus_tag="BSU_03788"
                     /old_locus_tag="BSU03788"
                     /label="yczM gene"
     downshifts      complement(411912)
                     /Source="Nicolas_upshifts"
                     /id="D166"
                     /incds=0
                     /nref=25
                     /ntot=113
                     /MaxReadThrough="7.05273"
                     /MaxDrop="3.3619"
                     /score="32.1465401"
                     /energy="-16.5"
                     /TU="U290"
                     /idTUdmin="U290"
                     /TUdmin="-198"
                     /isTUend="FALSE"
                     /label="downshifts"
     CDS             complement(411923..412036)
                     /gene="yczN"
                     /locus_tag="BSU_03789"
                     /old_locus_tag="BSU03789"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 21670523; Product type
                     f: factor"
                     /codon_start=1
                     /transl_table=11
                     /product="putative spore and germination protein"
                     /protein_id="YP_003097677.1"
                     /db_xref="EnsemblGenomes-Gn:BSU03789"
                     /db_xref="EnsemblGenomes-Tr:CAX52548"
                     /db_xref="GOA:C0H3V1"
                     /db_xref="InterPro:IPR010070"
                     /db_xref="UniProtKB/Swiss-Prot:C0H3V1"
                     /translation="MSGYSNGGGYGGISSFALIVVLFILLIIVGTAFVGGF*"
                     /label="yczN CDS"
     gene            complement(411923..412036)
                     /gene="yczN"
                     /locus_tag="BSU_03789"
                     /old_locus_tag="BSU03789"
                     /label="yczN gene"
     promotor_-10    complement(412057..412076)
                     /Source="Nicolas_upshift_promotors"
                     /id="U290"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp="0.999000999001"
                     /psig="0.999000999001"
                     /xcortree=1406
                     /SigmaFactorBS="attcttcattttttctcttgtccactattaTCCCTGCCAAat
                     ggatcggttcAGCATATCTTATAGTATCCTtcatagggaggtgaaaccttatgtcagg
                     a"
                     /listShort="yczN, yczM"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(412068)
                     /Source="Nicolas_upshifts"
                     /id="U290"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp="0.999000999001"
                     /psig="0.999000999001"
                     /xcortree=1406
                     /SigmaFactorBS="attcttcattttttctcttgtccactattaTCCCTGCCAAat
                     ggatcggttcAGCATATCTTATAGTATCCTtcatagggaggtgaaaccttatgtcagg
                     a"
                     /listShort="yczN, yczM"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(412089..412098)
                     /Source="Nicolas_upshift_promotors"
                     /id="U290"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp="0.999000999001"
                     /psig="0.999000999001"
                     /xcortree=1406
                     /SigmaFactorBS="attcttcattttttctcttgtccactattaTCCCTGCCAAat
                     ggatcggttcAGCATATCTTATAGTATCCTtcatagggaggtgaaaccttatgtcagg
                     a"
                     /listShort="yczN, yczM"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             complement(412190..413554)
                     /gene="thrD"
                     /locus_tag="BSU_03790"
                     /old_locus_tag="BSU03790"
                     /EC_number="2.7.2.4"
                     /function="16.2: Construct biomass (Anabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:2152900, 11471740, 27260660"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 2152900, 11471740,
                     27260660; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate kinase III"
                     /protein_id="NP_388261.1"
                     /db_xref="EnsemblGenomes-Gn:BSU03790"
                     /db_xref="EnsemblGenomes-Tr:CAB12187"
                     /db_xref="GOA:P94417"
                     /db_xref="InterPro:IPR001048"
                     /db_xref="InterPro:IPR001341"
                     /db_xref="InterPro:IPR002912"
                     /db_xref="InterPro:IPR005260"
                     /db_xref="InterPro:IPR018042"
                     /db_xref="InterPro:IPR027795"
                     /db_xref="InterPro:IPR035804"
                     /db_xref="InterPro:IPR036393"
                     /db_xref="SubtiList:BG12033"
                     /db_xref="UniProtKB/Swiss-Prot:P94417"
                     /translation="MKVVKFGGSSLASGAQLDKVFHIVTSDPARKAVVVSAPGKHYAE
                     DTKVTDLLIACAEQYLATGSAPELAEAVVERYALIANELQLGQSIIEKIRDDLFTLLE
                     GDKSNPEQYLDAVKASGEDNNAKLIAAYFRYKGVKAEYVNPKDAGLFVTNEPGNAQVL
                     PESYQNLYRLRERDGLIIFPGFFGFSKDGDVITFSRSGSDITGSILANGLQADLYENF
                     TDVDAVYSVNPSFVENPKEISELTYREMRELSYAGFSVFHDEALIPAFRAGIPVQIKN
                     TNNPSAEGTRVVSKRDNTNGPVVGIASDTGFCSIYISKYLMNREIGFGRRALQILEEH
                     GLTYEHVPSGIDDMTIILRQGQMDAATERSVIKRIEEDLHADEVIVEHHLALIMVVGE
                     AMRHNVGTTARAAKALSEAQVNIEMINQGSSEVSMMFGVKEAEERKAVQALYQEFFAG
                     VLIS*"
                     /label="thrD CDS"
     gene            complement(412190..413554)
                     /gene="thrD"
                     /locus_tag="BSU_03790"
                     /old_locus_tag="BSU03790"
                     /label="thrD gene"
     downshifts      complement(412198)
                     /Source="Nicolas_upshifts"
                     /id="D167"
                     /incds=0
                     /nref=23
                     /ntot=129
                     /MaxReadThrough="2.21842"
                     /MaxDrop="4.81019"
                     /score="44.9085917"
                     /energy="-15"
                     /TU="NA"
                     /idTUdmin="U291"
                     /TUdmin=0
                     /isTUend="TRUE"
                     /label="downshifts"
     downshifts      complement(412242)
                     /Source="Nicolas_upshifts"
                     /id="D168"
                     /incds=0
                     /nref=1
                     /ntot=17
                     /MaxReadThrough="5.53807"
                     /MaxDrop="2.54279"
                     /score="44.9085917"
                     /energy="-15"
                     /TU="U291"
                     /idTUdmin="U291"
                     /TUdmin="-44"
                     /isTUend="FALSE"
                     /label="downshifts"
     promotor_-10    complement(413590..413609)
                     /Source="Nicolas_upshift_promotors"
                     /id="U291"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.946053946053946"
                     /psig="0.999000999001"
                     /xcortree=3042
                     /SigmaFactorBS="aaaaatacaaatgttctcctgagaaagaaattcccCCTTGAT
                     TtacagtactgaaagAGAGATAATAAATACTAAATttgtgtgaaaattttaaacatta
                     g"
                     /listShort="yclM"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(413606)
                     /Source="Nicolas_upshifts"
                     /id="U291"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.946053946053946"
                     /psig="0.999000999001"
                     /xcortree=3042
                     /SigmaFactorBS="aaaaatacaaatgttctcctgagaaagaaattcccCCTTGAT
                     TtacagtactgaaagAGAGATAATAAATACTAAATttgtgtgaaaattttaaacatta
                     g"
                     /listShort="yclM"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(413624..413631)
                     /Source="Nicolas_upshift_promotors"
                     /id="U291"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.946053946053946"
                     /psig="0.999000999001"
                     /xcortree=3042
                     /SigmaFactorBS="aaaaatacaaatgttctcctgagaaagaaattcccCCTTGAT
                     TtacagtactgaaagAGAGATAATAAATACTAAATttgtgtgaaaattttaaacatta
                     g"
                     /listShort="yclM"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-35    413745..413749
                     /Source="Nicolas_upshift_promotors"
                     /id="U292"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.843156843156843"
                     /psig="0.997002997002997"
                     /xcortree=2746
                     /SigmaFactorBS="aaatatggtaaacagcctaacgttttggGATGGaaaatggtt
                     agaatgATTAGTAAAATTGATAAATGactaggttaatatttttaaagaatattgacta
                     a"
                     /listShort="S130, yclN, yclO, yclP, yclQ"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    413765..413784
                     /Source="Nicolas_upshift_promotors"
                     /id="U292"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.843156843156843"
                     /psig="0.997002997002997"
                     /xcortree=2746
                     /SigmaFactorBS="aaatatggtaaacagcctaacgttttggGATGGaaaatggtt
                     agaatgATTAGTAAAATTGATAAATGactaggttaatatttttaaagaatattgacta
                     a"
                     /listShort="S130, yclN, yclO, yclP, yclQ"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        413777
                     /Source="Nicolas_upshifts"
                     /id="U292"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.843156843156843"
                     /psig="0.997002997002997"
                     /xcortree=2746
                     /SigmaFactorBS="aaatatggtaaacagcctaacgttttggGATGGaaaatggtt
                     agaatgATTAGTAAAATTGATAAATGactaggttaatatttttaaagaatattgacta
                     a"
                     /listShort="S130, yclN, yclO, yclP, yclQ"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    413808..413815
                     /Source="Nicolas_upshift_promotors"
                     /id="U293"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.926073926073926"
                     /psig=1
                     /xcortree=2099
                     /SigmaFactorBS="ataaatgactaggttaatatttttaaagaaTATTGACTaacc
                     ctataaaaaTGGTAATATGTAAATGATAAtgataatcaattactatatggccatattg
                     t"
                     /listShort="S130, yclN, yclO, yclP, yclQ"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    413829..413848
                     /Source="Nicolas_upshift_promotors"
                     /id="U293"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.926073926073926"
                     /psig=1
                     /xcortree=2099
                     /SigmaFactorBS="ataaatgactaggttaatatttttaaagaaTATTGACTaacc
                     ctataaaaaTGGTAATATGTAAATGATAAtgataatcaattactatatggccatattg
                     t"
                     /listShort="S130, yclN, yclO, yclP, yclQ"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     S_feature       413838..413938
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_432271_432371"
                     /HighExp="LBGexp, Lbexp, G150, dia0, G135, H2O2, Paraq,
                     dia15, G180, Diami"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA, SigA"
                     /TUshortPSig="1, 0.997"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S130"
     upshifts        413838
                     /Source="Nicolas_upshifts"
                     /id="U293"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.926073926073926"
                     /psig=1
                     /xcortree=2099
                     /SigmaFactorBS="ataaatgactaggttaatatttttaaagaaTATTGACTaacc
                     ctataaaaaTGGTAATATGTAAATGATAAtgataatcaattactatatggccatattg
                     t"
                     /listShort="S130, yclN, yclO, yclP, yclQ"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             413939..414889
                     /gene="pbtN"
                     /locus_tag="BSU_03800"
                     /old_locus_tag="BSU03800"
                     /function="16.1: Circulate"
                     /experiment="publication(s) with functional evidences,
                     PMID:12354229, 15849754, 16850406, 19955416"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 12354229, 15849754,
                     16850406, 19955416; Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="petrobactin iron-siderophore ABC transporter
                     (permease)"
                     /protein_id="NP_388262.1"
                     /db_xref="EnsemblGenomes-Gn:BSU03800"
                     /db_xref="EnsemblGenomes-Tr:CAB12188"
                     /db_xref="GOA:P94418"
                     /db_xref="InterPro:IPR000522"
                     /db_xref="InterPro:IPR035568"
                     /db_xref="SubtiList:BG12034"
                     /db_xref="UniProtKB/Swiss-Prot:P94418"
                     /translation="MKLRYLFILLIILAVTSVFIGVEDLSPLDLFDLSKQEASTLFAS
                     RLPRLISIVIAGLSMSICGLIMQQISRNKFVSPTTAGTMDWARLGILISLLLFTSASP
                     LIKMLVAFVFALAGNFLFMKILERIKFNDTIFIPLVGLMLGNIVSSIATFIAYKYDLI
                     QNVSSWLQGDFSLVVKGRYELLYLSIPLVIIAYVYADKFTLAGMGESFSVNLGLKYKR
                     VVNIGLIIVSLITSLVILTVGMLPFLGLIIPNIVSIYRGDNLKSSLPHTVLLGAVFVL
                     FCDILGRIIIFPYEISIGLMVGIIGSGIFLFMLLRRKAYA*"
                     /label="pbtN CDS"
     gene            413939..414889
                     /gene="pbtN"
                     /locus_tag="BSU_03800"
                     /old_locus_tag="BSU03800"
                     /label="pbtN gene"
     CDS             414882..415829
                     /gene="pbtO"
                     /locus_tag="BSU_03810"
                     /old_locus_tag="BSU03810"
                     /function="16.1: Circulate"
                     /experiment="publication(s) with functional evidences,
                     PMID:12354229, 15849754, 16850406, 19955416"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 12354229, 15849754,
                     16850406, 19955416; Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="petrobactin iron-siderophore ABC transporter
                     (permease)"
                     /protein_id="NP_388263.1"
                     /db_xref="EnsemblGenomes-Gn:BSU03810"
                     /db_xref="EnsemblGenomes-Tr:CAB12189"
                     /db_xref="GOA:P94419"
                     /db_xref="InterPro:IPR000522"
                     /db_xref="InterPro:IPR035568"
                     /db_xref="SubtiList:BG12035"
                     /db_xref="UniProtKB/Swiss-Prot:P94419"
                     /translation="MRNQMKIALLVGLAIVCIGLFLFYDLGNWDYTLPRRIKKVAAIV
                     LTGGAIAFSTMIFQTITNNRILTPSILGLDSLYMLIQTGIIFLFGSANMVIMNKNINF
                     IISVLLMILFSLVLYQIMFKGEGRNIFFLLLIGIVFGTLFSSLSSFMQMLIDPNEFQV
                     VQDKMFASFNNINTDLLWLAFIIFLLTGVYVWRFTKFFDVLSLGREHAVNLGIDYDKV
                     VKQMLIVVAILVSVSTALVGPIMFLGLLVVNLAREFLKTYKHSYLIAGSVFISIIALV
                     GGQFVVEKVFTFSTTLSVIINFAGGIYFIYLLLKENKSW*"
                     /label="pbtO CDS"
     gene            414882..415829
                     /gene="pbtO"
                     /locus_tag="BSU_03810"
                     /old_locus_tag="BSU03810"
                     /label="pbtO gene"
     CDS             415823..416581
                     /gene="pbtP"
                     /locus_tag="BSU_03820"
                     /old_locus_tag="BSU03820"
                     /function="16.1: Circulate"
                     /experiment="publication(s) with functional evidences,
                     PMID:12354229, 19955416"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 12354229, 19955416;
                     Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="petrobactin iron-siderophore ABC transporter
                     (ATP-binding protein)"
                     /protein_id="NP_388264.1"
                     /db_xref="EnsemblGenomes-Gn:BSU03820"
                     /db_xref="EnsemblGenomes-Tr:CAB12190"
                     /db_xref="GOA:P94420"
                     /db_xref="InterPro:IPR003439"
                     /db_xref="InterPro:IPR003593"
                     /db_xref="InterPro:IPR017871"
                     /db_xref="InterPro:IPR027417"
                     /db_xref="SubtiList:BG12036"
                     /db_xref="UniProtKB/Swiss-Prot:P94420"
                     /translation="MVEVRNVSKQYGGKVVLEETSVTIQKGKITSFIGPNGAGKSTLL
                     SIMSRLIKKDSGEIYIDGQEIGACDSKELAKKMSILKQANQINIRLTIKDLVSFGRFP
                     YSQGRLTEEDWVHINQALSYMKLEDIQDKYLDQLSGGQCQRAFIAMVIAQDTDYIFLD
                     EPLNNLDMKHSVEIMKLLKRLVEELGKTIVIVIHDINFASVYSDYIVALKNGRIVKEG
                     PPEEMIETSVLEEIYDMTIPIQTIDNQRIGVYFS*"
                     /label="pbtP CDS"
     gene            415823..416581
                     /gene="pbtP"
                     /locus_tag="BSU_03820"
                     /old_locus_tag="BSU03820"
                     /label="pbtP gene"
     CDS             416603..417556
                     /gene="pbtQ"
                     /locus_tag="BSU_03830"
                     /old_locus_tag="BSU03830"
                     /function="16.1: Circulate"
                     /experiment="publication(s) with functional evidences,
                     PMID:12354229, 19955416, 25355936"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 12354229, 19955416,
                     25355936; Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="petrobactin iron-siderophore ABC transporter
                     (binding lipoprotein)"
                     /protein_id="NP_388265.1"
                     /db_xref="EnsemblGenomes-Gn:BSU03830"
                     /db_xref="EnsemblGenomes-Tr:CAB12191"
                     /db_xref="GOA:P94421"
                     /db_xref="InterPro:IPR002491"
                     /db_xref="InterPro:IPR033870"
                     /db_xref="PDB:3GFV"
                     /db_xref="SubtiList:BG12037"
                     /db_xref="UniProtKB/Swiss-Prot:P94421"
                     /translation="MKKFALLFIALVTAVVISACGNQSTSSKGSDTKKEQITVKHQLD
                     KNGTKVPKNPKKVVVFDFGSLDTLDKLGLDDIVAGLPKQVLPKYLSKFKDDKYADVGS
                     LKEPDFDKVAELDPDLIIISARQSESYKEFSKIAPTIYLGVDTAKYMESFKSDAETIG
                     KIFDKEDKVKDELANIDHSIADVKKTAEKLNKNGLVIMANDGKISAFGPKSRYGLIHD
                     VFGVAPADQNIKASTHGQSVSYEYISKTNPDYLFVIDRGTAIGETSSTKQVVENDYVK
                     NVNAVKNGHVIYLDSATWYLSGGGLESMTQMIKEVKDGLEK*"
                     /label="pbtQ CDS"
     gene            416603..417556
                     /gene="pbtQ"
                     /locus_tag="BSU_03830"
                     /old_locus_tag="BSU03830"
                     /label="pbtQ gene"
     downshifts      417539
                     /Source="Nicolas_upshifts"
                     /id="D169"
                     /incds=0
                     /nref=161
                     /ntot=280
                     /MaxReadThrough="3.87669"
                     /MaxDrop="7.4722"
                     /score="31.9942335"
                     /energy="-13.8"
                     /TU="U293"
                     /idTUdmin="U292"
                     /TUdmin=5
                     /isTUend="TRUE"
                     /label="downshifts"
     CDS             complement(417603..419021)
                     /gene="ycnB"
                     /locus_tag="BSU_03840"
                     /old_locus_tag="BSU03840"
                     /function="16.1: Circulate"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 15849754, 15855514,
                     16850406; Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="putative efflux transporter"
                     /protein_id="NP_388266.1"
                     /db_xref="EnsemblGenomes-Gn:BSU03840"
                     /db_xref="EnsemblGenomes-Tr:CAB12192"
                     /db_xref="GOA:P94422"
                     /db_xref="InterPro:IPR004638"
                     /db_xref="InterPro:IPR011701"
                     /db_xref="InterPro:IPR020846"
                     /db_xref="InterPro:IPR036259"
                     /db_xref="SubtiList:BG12038"
                     /db_xref="UniProtKB/Swiss-Prot:P94422"
                     /translation="MNTSIEQKPFNRSVIVGILLAGAFVAILNQTLLITALPHIMRDF
                     NVDANQAQWLTTSFMLTNGILIPITAFLIEKFTSRALLITAMSIFTAGTVVGAFAPNF
                     PVLLTARIIQAAGAGIMMPLMQTVFLTIFPIEKRGQAMGMVGLVISFAPAIGPTLSGW
                     AVEAFSWRSLFYIILPFAVIDLILASILMKNVTTLRKTQIDILSVILSTFGFGGLLYG
                     FSSVGSYGWSSSTVLISLLVGVIALLLFITRQMKLKKPMLEFRVFTFGVFSLTTLLGT
                     LVFALLIGTETILPLYTQNVRDVTAFDTGLMLLPGAVVMGFMSPIIGRIFDRVGGRGL
                     AIAGFCIIFLTSLPFMQLTDHTSLAWIVVLYTVRLLGTAMIMMPVTTAGINALPRHLI
                     PHGTAMNNTIRQVGGSIGTALLVSVMSNQAAHAGTTNVKHAALHGMNAAFIVAAVIAL
                     VGFLLSFTLKKPQRPAEQQPAR*"
                     /label="ycnB CDS"
     gene            complement(417603..419021)
                     /gene="ycnB"
                     /locus_tag="BSU_03840"
                     /old_locus_tag="BSU03840"
                     /label="ycnB gene"
     downshifts      complement(417624)
                     /Source="Nicolas_upshifts"
                     /id="D170"
                     /incds=0
                     /nref=8
                     /ntot=150
                     /MaxReadThrough="2.00954"
                     /MaxDrop="5.13029"
                     /score="17.5501827"
                     /energy="-13.8"
                     /TU="NA"
                     /idTUdmin="U294"
                     /TUdmin="-14"
                     /isTUend="TRUE"
                     /label="downshifts"
     CDS             complement(419041..419919)
                     /gene="ycnC"
                     /locus_tag="BSU_03850"
                     /old_locus_tag="BSU03850"
                     /function="16.3: Control"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; Product type r: regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="putative transcriptional regulator (TetR/AcrR
                     family)"
                     /protein_id="NP_388267.2"
                     /db_xref="EnsemblGenomes-Gn:BSU03850"
                     /db_xref="EnsemblGenomes-Tr:CAB12193"
                     /db_xref="GOA:P94423"
                     /db_xref="InterPro:IPR001647"
                     /db_xref="InterPro:IPR009057"
                     /db_xref="SubtiList:BG12039"
                     /db_xref="UniProtKB/Swiss-Prot:P94423"
                     /translation="MLDKKTDILLAARKLFSEKDFTSVSMQAIAEECKMSKASIYKLF
                     QSKEDLLLELLSFNQKQMVAAASRLQENTALTPEERLTQKVKMELEGFRRNQQFFNML
                     TYGNPKLHNDRVKQHIHQTRSTIICWHRDSLIQAYGETILPFVWDLVIILHGMMREFL
                     MLIKIEEKPLELDPIAEFIISTLNQIIKNRETRQSLLPPEAIELYIHSASSYKPKDKS
                     VLLSESLKELHKGISSLSAADYDVDELTSAAAMLEEEAKKEEPRAFLLKSLIGYLEQT
                     GVLTQPVSMLKTLLIT*"
                     /label="ycnC CDS"
     gene            complement(419041..419919)
                     /gene="ycnC"
                     /locus_tag="BSU_03850"
                     /old_locus_tag="BSU03850"
                     /label="ycnC gene"
     S_feature       complement(419920..419986)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_438353_438419_c"
                     /HighExp="dia15, H2O2, Diami, Paraq, Oxctl, Cold, G180,
                     Salt, BMM, GM 120"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.999"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S131"
     promotor_-10    complement(419985..420004)
                     /Source="Nicolas_upshift_promotors"
                     /id="U294"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.373626373626374"
                     /psig="0.999000999001"
                     /xcortree=2489
                     /SigmaFactorBS="gcaggcctttcatttacccggttaaaatcCATTGACttctat
                     tttgtttaTCTGGTAAAATTTTTTCATTgttactcattggttttctgtgaaccaatgg
                     g"
                     /listShort="S131, ycnC, ycnB"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(419994)
                     /Source="Nicolas_upshifts"
                     /id="U294"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.373626373626374"
                     /psig="0.999000999001"
                     /xcortree=2489
                     /SigmaFactorBS="gcaggcctttcatttacccggttaaaatcCATTGACttctat
                     tttgtttaTCTGGTAAAATTTTTTCATTgttactcattggttttctgtgaaccaatgg
                     g"
                     /listShort="S131, ycnC, ycnB"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(420019..420025)
                     /Source="Nicolas_upshift_promotors"
                     /id="U294"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.373626373626374"
                     /psig="0.999000999001"
                     /xcortree=2489
                     /SigmaFactorBS="gcaggcctttcatttacccggttaaaatcCATTGACttctat
                     tttgtttaTCTGGTAAAATTTTTTCATTgttactcattggttttctgtgaaccaatgg
                     g"
                     /listShort="S131, ycnC, ycnB"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             complement(420083..420832)
                     /gene="nfrAB"
                     /locus_tag="BSU_03860"
                     /old_locus_tag="BSU03860"
                     /EC_number="1.5.1.39"
                     /EC_number="1.6.99.-"
                     /function="16.11: Scavenge (Catabolism)"
                     /function="16.8: Protect"
                     /experiment="publication(s) with functional evidences,
                     PMID:16229462, 9836433, 20862523"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 16229462, 9836433,
                     20862523; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="NADPH-FMN oxidoreductase (nitroreductase)"
                     /protein_id="NP_388268.1"
                     /db_xref="EnsemblGenomes-Gn:BSU03860"
                     /db_xref="EnsemblGenomes-Tr:CAB12194"
                     /db_xref="GOA:P94424"
                     /db_xref="InterPro:IPR000415"
                     /db_xref="InterPro:IPR016446"
                     /db_xref="InterPro:IPR029479"
                     /db_xref="PDB:1ZCH"
                     /db_xref="SubtiList:BG12040"
                     /db_xref="UniProtKB/Swiss-Prot:P94424"
                     /translation="MNEVIKSLTDHRSIRSYTDEPVAQEQLDQIIEAVQSAPSSINGQ
                     QVTVITVQDKERKKKISELAGGQPWIDQAPVFLLFCADFNRAKIALEDLHDFKMEITN
                     GLESVLVGAVDAGIALGTATAAAESLGLGTVPIGAVRGNPQELIELLELPKYVFPLSG
                     LVIGHPADRSAKKPRLPQEAVNHQETYLNQDELTSHIQAYDEQMSEYMNKRTNGKETR
                     NWSQSIASYYERLYYPHIREMLEKQGFKVEK*"
                     /label="nfrAB CDS"
     gene            complement(420083..420832)
                     /gene="nfrAB"
                     /locus_tag="BSU_03860"
                     /old_locus_tag="BSU03860"
                     /label="nfrAB gene"
     downshifts      complement(420096)
                     /Source="Nicolas_upshifts"
                     /id="D171"
                     /incds=0
                     /nref=136
                     /ntot=243
                     /MaxReadThrough="2.08639"
                     /MaxDrop="5.10745"
                     /score="11.1864402"
                     /energy="-18.6"
                     /TU="NA"
                     /idTUdmin="U296"
                     /TUdmin=0
                     /isTUend="TRUE"
                     /label="downshifts"
     CDS             complement(420849..421136)
                     /gene="ycnE"
                     /locus_tag="BSU_03870"
                     /old_locus_tag="BSU03870"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 17274596, 21454635;
                     Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative AI-2 degrading enzyme"
                     /protein_id="NP_388269.1"
                     /db_xref="EnsemblGenomes-Gn:BSU03870"
                     /db_xref="EnsemblGenomes-Tr:CAB12195"
                     /db_xref="GOA:P94425"
                     /db_xref="InterPro:IPR007138"
                     /db_xref="InterPro:IPR011008"
                     /db_xref="SubtiList:BG12041"
                     /db_xref="UniProtKB/Swiss-Prot:P94425"
                     /translation="MIVLQAYIKVKPEKREEFLSEAQSLVQHSRAEEGNAQYDLFEKV
                     GEENTFVMLEKWKDEAAMKFHNETAHFQGFVAKGKELLSAPLDVVRTELSE*"
                     /label="ycnE CDS"
     gene            complement(420849..421136)
                     /gene="ycnE"
                     /locus_tag="BSU_03870"
                     /old_locus_tag="BSU03870"
                     /label="ycnE gene"
     promotor_-35    421102..421109
                     /Source="Nicolas_upshift_promotors"
                     /id="U295"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.966033966033966"
                     /psig="0.993006993006993"
                     /xcortree=1982
                     /SigmaFactorBS="aaaattcctcgcgtttttctGGTTTTACtttgatgtaagctT
                     GTAATACGATCATGTAAATctcctccgtcgttatgcgaatttattgttcgaatttcat
                     c"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    421123..421142
                     /Source="Nicolas_upshift_promotors"
                     /id="U295"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.966033966033966"
                     /psig="0.993006993006993"
                     /xcortree=1982
                     /SigmaFactorBS="aaaattcctcgcgtttttctGGTTTTACtttgatgtaagctT
                     GTAATACGATCATGTAAATctcctccgtcgttatgcgaatttattgttcgaatttcat
                     c"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        421142
                     /Source="Nicolas_upshifts"
                     /id="U295"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.966033966033966"
                     /psig="0.993006993006993"
                     /xcortree=1982
                     /SigmaFactorBS="aaaattcctcgcgtttttctGGTTTTACtttgatgtaagctT
                     GTAATACGATCATGTAAATctcctccgtcgttatgcgaatttattgttcgaatttcat
                     c"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-10    complement(421180..421199)
                     /Source="Nicolas_upshift_promotors"
                     /id="U296"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.573426573426573"
                     /psig=1
                     /xcortree=1945
                     /SigmaFactorBS="acaattagaatgacaattttactatataagggttttTCCTTT
                     ACctcatttagaataCATGTTACATTTAGTTCGATgaaattcgaacaataaattcgca
                     t"
                     /listShort="ycnE, ycnD"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(421196)
                     /Source="Nicolas_upshifts"
                     /id="U296"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.573426573426573"
                     /psig=1
                     /xcortree=1945
                     /SigmaFactorBS="acaattagaatgacaattttactatataagggttttTCCTTT
                     ACctcatttagaataCATGTTACATTTAGTTCGATgaaattcgaacaataaattcgca
                     t"
                     /listShort="ycnE, ycnD"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(421213..421220)
                     /Source="Nicolas_upshift_promotors"
                     /id="U296"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.573426573426573"
                     /psig=1
                     /xcortree=1945
                     /SigmaFactorBS="acaattagaatgacaattttactatataagggttttTCCTTT
                     ACctcatttagaataCATGTTACATTTAGTTCGATgaaattcgaacaataaattcgca
                     t"
                     /listShort="ycnE, ycnD"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-35    421241..421248
                     /Source="Nicolas_upshift_promotors"
                     /id="U297"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.614385614385614"
                     /psig="0.955044955044955"
                     /xcortree=576
                     /SigmaFactorBS="taacatgtattctaaatgaggtaaaggaaaaacccttatata
                     gtaaaaTTGTCATTctaattgttgTATGATACATTTGTGTCATGaacattccaaacca
                     t"
                     /listShort="yczG"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     upshifts        421253
                     /Source="Nicolas_upshifts"
                     /id="U297"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.614385614385614"
                     /psig="0.955044955044955"
                     /xcortree=576
                     /SigmaFactorBS="taacatgtattctaaatgaggtaaaggaaaaacccttatata
                     gtaaaaTTGTCATTctaattgttgTATGATACATTTGTGTCATGaacattccaaacca
                     t"
                     /listShort="yczG"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-10    421259..421278
                     /Source="Nicolas_upshift_promotors"
                     /id="U297"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.614385614385614"
                     /psig="0.955044955044955"
                     /xcortree=576
                     /SigmaFactorBS="taacatgtattctaaatgaggtaaaggaaaaacccttatata
                     gtaaaaTTGTCATTctaattgttgTATGATACATTTGTGTCATGaacattccaaacca
                     t"
                     /listShort="yczG"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     CDS             421276..421590
                     /gene="yczG"
                     /locus_tag="BSU_03880"
                     /old_locus_tag="BSU03880"
                     /function="16.3: Control"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; Product type r: regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="putative transcriptional regulator (ArsR
                     family)"
                     /protein_id="NP_388270.1"
                     /db_xref="EnsemblGenomes-Gn:BSU03880"
                     /db_xref="EnsemblGenomes-Tr:CAB12196"
                     /db_xref="GOA:O31480"
                     /db_xref="InterPro:IPR001845"
                     /db_xref="InterPro:IPR011991"
                     /db_xref="InterPro:IPR036388"
                     /db_xref="InterPro:IPR036390"
                     /db_xref="SubtiList:BG12781"
                     /db_xref="UniProtKB/Swiss-Prot:O31480"
                     /translation="MNIPNHPETETLQLTKVLHALSDPLRLELVKQLAEAKEKTCSTC
                     ADVQVAKSTLSHHFKVLRESGIAQVRIEGKRRYYSLRAEDLEKAFPGLLEAVLNVDQD
                     RW*"
                     /label="yczG CDS"
     gene            421276..421590
                     /gene="yczG"
                     /locus_tag="BSU_03880"
                     /old_locus_tag="BSU03880"
                     /label="yczG gene"
     downshifts      421582
                     /Source="Nicolas_upshifts"
                     /id="D172"
                     /incds=0
                     /nref=173
                     /ntot=262
                     /MaxReadThrough="0.52252"
                     /MaxDrop="5.32898"
                     /score="20.7855667"
                     /energy="-7.4"
                     /TU="NA"
                     /idTUdmin="U297"
                     /TUdmin=0
                     /isTUend="TRUE"
                     /label="downshifts"
     CDS             complement(421592..423031)
                     /gene="gabR"
                     /locus_tag="BSU_03890"
                     /old_locus_tag="BSU03890"
                     /experiment="publication(s) with functional evidences,
                     PMID:15223311, 24127574, 25388514, 27640111, 28348215,
                     28412355"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 15223311, 24127574,
                     25388514, 27640111, 28348215, 28412355; Product type r :
                     regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator (GntR/MocR family)
                     with PLP binding site (GabR-GABA-PLP aldimine)"
                     /protein_id="NP_388271.1"
                     /db_xref="EnsemblGenomes-Gn:BSU03890"
                     /db_xref="EnsemblGenomes-Tr:CAB12197"
                     /db_xref="GOA:P94426"
                     /db_xref="InterPro:IPR000524"
                     /db_xref="InterPro:IPR004839"
                     /db_xref="InterPro:IPR015421"
                     /db_xref="InterPro:IPR015422"
                     /db_xref="InterPro:IPR015424"
                     /db_xref="InterPro:IPR036388"
                     /db_xref="InterPro:IPR036390"
                     /db_xref="PDB:4MGR"
                     /db_xref="PDB:4N0B"
                     /db_xref="PDB:4TV7"
                     /db_xref="PDB:5T4J"
                     /db_xref="PDB:5T4K"
                     /db_xref="PDB:5X03"
                     /db_xref="SubtiList:BG12042"
                     /db_xref="UniProtKB/Swiss-Prot:P94426"
                     /translation="MDITITLDRSEQADYIYQQIYQKLKKEILSRNLLPHSKVPSKRE
                     LAENLKVSVNSVNSAYQQLLAEGYLYAIERKGFFVEELDMFSAEEHPPFALPDDLKEI
                     HIDQSDWISFSHMSSDTDHFPIKSWFRCEQKAASRSYRTLGDMSHPQGIYEVRAAITR
                     LISLTRGVKCRPEQMIIGAGTQVLMQLLTELLPKEAVYAMEEPGYRRMYQLLKNAGKQ
                     VKTIMLDEKGMSIAEITRQQPDVLVTTPSHQFPSGTIMPVSRRIQLLNWAAEEPRRYI
                     IEDDYDSEFTYDVDSIPALQSLDRFQNVIYMGTFSKSLLPGLRISYMVLPPELLRAYK
                     QRGYDLQTCSSLTQLTLQEFIESGEYQKHIKKMKQHYKEKRERLITALEAEFSGEVTV
                     KGANAGLHFVTEFDTRRTEQDILSHAAGLQLEIFGMSRFNLKENKRQTGRPALIIGFA
                     RLKEEDIQEGVQRLFKAVYGHKKIPVTGD*"
                     /label="gabR CDS"
     gene            complement(421592..423031)
                     /gene="gabR"
                     /locus_tag="BSU_03890"
                     /old_locus_tag="BSU03890"
                     /label="gabR gene"
     promotor_-10    complement(421916..421927)
                     /Source="Nicolas_upshift_promotors"
                     /id="U298"
                     /multdbtbs="-"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp="0.998001998001998"
                     /psig="0.998001998001998"
                     /xcortree=919
                     /SigmaFactorBS="cctgcaggaatttatcgagtctggtgaatatcagaAGCATAT
                     aaaaaaaatgaagCAGCATTATAAAgaaaagagagaacgcctgatcaccgctttagaa
                     g"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(421922)
                     /Source="Nicolas_upshifts"
                     /id="U298"
                     /multdbtbs="-"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp="0.998001998001998"
                     /psig="0.998001998001998"
                     /xcortree=919
                     /SigmaFactorBS="cctgcaggaatttatcgagtctggtgaatatcagaAGCATAT
                     aaaaaaaatgaagCAGCATTATAAAgaaaagagagaacgcctgatcaccgctttagaa
                     g"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(421941..421947)
                     /Source="Nicolas_upshift_promotors"
                     /id="U298"
                     /multdbtbs="-"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp="0.998001998001998"
                     /psig="0.998001998001998"
                     /xcortree=919
                     /SigmaFactorBS="cctgcaggaatttatcgagtctggtgaatatcagaAGCATAT
                     aaaaaaaatgaagCAGCATTATAAAgaaaagagagaacgcctgatcaccgctttagaa
                     g"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    complement(423074..423093)
                     /Source="Nicolas_upshift_promotors"
                     /id="U299"
                     /multdbtbs="SigA"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.728271728271728"
                     /psig="0.999000999001"
                     /xcortree=2992
                     /SigmaFactorBS="tcatgtgaatatccccctgtcggtattttcTTATCATTctga
                     cttctcTTTGGTATGATGAAAAGTACcaattataactttttgatggtatcagaaggag
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     promotor_-35    423075..423082
                     /Source="Nicolas_upshift_promotors"
                     /id="U300"
                     /multdbtbs="SigA"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.537462537462537"
                     /psig="0.942057942057942"
                     /xcortree=377
                     /SigmaFactorBS="ttctccttctgataccatcaaaaagttataattggTACTTTT
                     CatcataccaaagaGAAGTCAGAATGATAAGAAAataccgacagggggatattcacat
                     g"
                     /listShort="gabT"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     upshifts        complement(423081)
                     /Source="Nicolas_upshifts"
                     /id="U299"
                     /multdbtbs="SigA"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.728271728271728"
                     /psig="0.999000999001"
                     /xcortree=2992
                     /SigmaFactorBS="tcatgtgaatatccccctgtcggtattttcTTATCATTctga
                     cttctcTTTGGTATGATGAAAAGTACcaattataactttttgatggtatcagaaggag
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-10    423096..423115
                     /Source="Nicolas_upshift_promotors"
                     /id="U300"
                     /multdbtbs="SigA"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.537462537462537"
                     /psig="0.942057942057942"
                     /xcortree=377
                     /SigmaFactorBS="ttctccttctgataccatcaaaaagttataattggTACTTTT
                     CatcataccaaagaGAAGTCAGAATGATAAGAAAataccgacagggggatattcacat
                     g"
                     /listShort="gabT"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        423100
                     /Source="Nicolas_upshifts"
                     /id="U300"
                     /multdbtbs="SigA"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.537462537462537"
                     /psig="0.942057942057942"
                     /xcortree=377
                     /SigmaFactorBS="ttctccttctgataccatcaaaaagttataattggTACTTTT
                     CatcataccaaagaGAAGTCAGAATGATAAGAAAataccgacagggggatattcacat
                     g"
                     /listShort="gabT"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(423104..423111)
                     /Source="Nicolas_upshift_promotors"
                     /id="U299"
                     /multdbtbs="SigA"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.728271728271728"
                     /psig="0.999000999001"
                     /xcortree=2992
                     /SigmaFactorBS="tcatgtgaatatccccctgtcggtattttcTTATCATTctga
                     cttctcTTTGGTATGATGAAAAGTACcaattataactttttgatggtatcagaaggag
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             423138..424448
                     /gene="gabT"
                     /locus_tag="BSU_03900"
                     /old_locus_tag="BSU03900"
                     /EC_number="2.6.1.19"
                     /function="16.8: Protect"
                     /experiment="publication(s) with functional evidences,
                     PMID:4590473, 12123465, 12354229, 15590624, 9723923,
                     19854901, 24529384"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 4590473, 12123465,
                     12354229, 15590624, 9723923, 19854901, 24529384; Product
                     type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="4-aminobutyrate aminotransferase"
                     /protein_id="NP_388272.1"
                     /db_xref="EnsemblGenomes-Gn:BSU03900"
                     /db_xref="EnsemblGenomes-Tr:CAB12198"
                     /db_xref="GOA:P94427"
                     /db_xref="InterPro:IPR004632"
                     /db_xref="InterPro:IPR005814"
                     /db_xref="InterPro:IPR015421"
                     /db_xref="InterPro:IPR015422"
                     /db_xref="InterPro:IPR015424"
                     /db_xref="SubtiList:BG12043"
                     /db_xref="UniProtKB/Swiss-Prot:P94427"
                     /translation="MSQTTASITTAQWQQKRDQFVSKGVSNGNRSLAVKGEGAELYDL
                     DGRRFIDFAGAIGTLNVGHSHPKVVEAVKRQAEELIHPGFNVMMYPTYIELAEKLCGI
                     APGSHEKKAIFLNSGAEAVENAVKIARKYTKRQGVVSFTRGFHGRTNMTMSMTSKVKP
                     YKFGFGPFAPEVYQAPFPYYYQKPAGMSDESYDDMVIQAFNDFFIASVAPETVACVVM
                     EPVQGEGGFIIPSKRFVQHVASFCKEHGIVFVADEIQTGFARTGTYFAIEHFDVVPDL
                     ITVSKSLAAGLPLSGVIGRAEMLDAAAPGELGGTYAGSPLGCAAALAVLDIIEEEGLN
                     ERSEEIGKIIEDKAYEWKQEFPFIGDIRRLGAMAAIEIVKDPDTREPDKTKAAAIAAY
                     ANQNGLLLLTAGINGNIIRFLTPLVISDSLLNEGLSILEAGLRA*"
                     /label="gabT CDS"
     gene            423138..424448
                     /gene="gabT"
                     /locus_tag="BSU_03900"
                     /old_locus_tag="BSU03900"
                     /label="gabT gene"
     promotor_-35    424326..424332
                     /Source="Nicolas_upshift_promotors"
                     /id="U301"
                     /multdbtbs="SigB"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp=1
                     /psig=1
                     /xcortree=250
                     /SigmaFactorBS="cagcagcgatcgcggcctatgcgaatcaaaacGGATTACttt
                     tgctgacagcGGGAATTAACGGTAATATCatccgctttttgacaccgctcgtcatctc
                     a"
                     /listShort="gabD"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    424346..424364
                     /Source="Nicolas_upshift_promotors"
                     /id="U301"
                     /multdbtbs="SigB"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp=1
                     /psig=1
                     /xcortree=250
                     /SigmaFactorBS="cagcagcgatcgcggcctatgcgaatcaaaacGGATTACttt
                     tgctgacagcGGGAATTAACGGTAATATCatccgctttttgacaccgctcgtcatctc
                     a"
                     /listShort="gabD"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        424354
                     /Source="Nicolas_upshifts"
                     /id="U301"
                     /multdbtbs="SigB"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp=1
                     /psig=1
                     /xcortree=250
                     /SigmaFactorBS="cagcagcgatcgcggcctatgcgaatcaaaacGGATTACttt
                     tgctgacagcGGGAATTAACGGTAATATCatccgctttttgacaccgctcgtcatctc
                     a"
                     /listShort="gabD"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    424450..424457
                     /Source="Nicolas_upshift_promotors"
                     /id="U302"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.987012987012987"
                     /psig="0.998001998001998"
                     /xcortree=2034
                     /SigmaFactorBS="catcttggaggcgggcctgcgagcttaatCATTGGAAagaaa
                     atggccgggTCTGCTATCATTTTAAGTAAtcatgaaaagaaaggaatgttcaatatgc
                     c"
                     /listShort="gabD"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    424472..424491
                     /Source="Nicolas_upshift_promotors"
                     /id="U302"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.987012987012987"
                     /psig="0.998001998001998"
                     /xcortree=2034
                     /SigmaFactorBS="catcttggaggcgggcctgcgagcttaatCATTGGAAagaaa
                     atggccgggTCTGCTATCATTTTAAGTAAtcatgaaaagaaaggaatgttcaatatgc
                     c"
                     /listShort="gabD"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        424481
                     /Source="Nicolas_upshifts"
                     /id="U302"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.987012987012987"
                     /psig="0.998001998001998"
                     /xcortree=2034
                     /SigmaFactorBS="catcttggaggcgggcctgcgagcttaatCATTGGAAagaaa
                     atggccgggTCTGCTATCATTTTAAGTAAtcatgaaaagaaaggaatgttcaatatgc
                     c"
                     /listShort="gabD"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             424517..425905
                     /gene="gabD"
                     /locus_tag="BSU_03910"
                     /old_locus_tag="BSU03910"
                     /EC_number="1.2.1.24"
                     /function="16.8: Protect"
                     /experiment="publication(s) with functional evidences,
                     PMID:12354229, 15590624, 9723923, 12123465, 24529384,
                     24809290, 25911692"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 12354229, 15590624,
                     9723923, 12123465, 24529384, 24809290, 25911692; Product
                     type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="succinate-semialdehyde dehydrogenase"
                     /protein_id="NP_388273.1"
                     /db_xref="EnsemblGenomes-Gn:BSU03910"
                     /db_xref="EnsemblGenomes-Tr:CAB12199"
                     /db_xref="GOA:P94428"
                     /db_xref="InterPro:IPR010102"
                     /db_xref="InterPro:IPR012394"
                     /db_xref="InterPro:IPR015590"
                     /db_xref="InterPro:IPR016160"
                     /db_xref="InterPro:IPR016161"
                     /db_xref="InterPro:IPR016162"
                     /db_xref="SubtiList:BG12044"
                     /db_xref="UniProtKB/Swiss-Prot:P94428"
                     /translation="MPDQLTVYNPATGEEIKTIPQQSATEVEEAIERSHQAFKTWSKT
                     SANERTSLLKKWYELIVEHKEELADLITKENGKPYQEAVGEVLYGAGYIEWFAEEAKR
                     VYGRTVPAPTTGKRIVVTRQPVGPVAAITPWNFPNAMITRKAAPALAAGCTFIIKPAP
                     DTPLSAYELARLAYEAGIPKDVLQVVIGDGEEIGNVFTSSPKIRKITFTGSTPVGKIL
                     MKNSADTVKHVSMELGGHAPLIVDEDADIDLAVEQAMASKYRNAGQTCVCANRLIVHE
                     SIKDEFAAKLSEQVSKLKVGNGLEEGVNVGPIINKRGFEKIVSQIDDAVEKGAKVIAG
                     GTYDRNDDKGCYFVNPTVLTDVDTSMNIMHEETFGPVAPIVTFSDIDEAIQLANDTPY
                     GLAAYFFTENYRRGIYISENLEYGIIGWNDGGPSAVQAPFGGMKESGIGREGGSEGIE
                     PYLETKYLSIGL*"
                     /label="gabD CDS"
     gene            424517..425905
                     /gene="gabD"
                     /locus_tag="BSU_03910"
                     /old_locus_tag="BSU03910"
                     /label="gabD gene"
     downshifts      425913
                     /Source="Nicolas_upshifts"
                     /id="D173"
                     /incds=0
                     /nref=107
                     /ntot=240
                     /MaxReadThrough="0.105510000000001"
                     /MaxDrop="6.52053"
                     /score="38.677658"
                     /energy="-19.9"
                     /TU="NA"
                     /idTUdmin="U301"
                     /TUdmin="-3"
                     /isTUend="TRUE"
                     /label="downshifts"
     promotor_-35    425963..425969
                     /Source="Nicolas_upshift_promotors"
                     /id="U303"
                     /multdbtbs="SigG"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp=1
                     /psig=1
                     /xcortree=885
                     /SigmaFactorBS="gagctgccggattttccggcagctctttttgtgttccggCGA
                     ATAAtcacaacaattccAGCCAAAATAACagcaaatacattttgaaagaaggttcccc
                     a"
                     /listShort="glcU, gdh"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    425983..425994
                     /Source="Nicolas_upshift_promotors"
                     /id="U303"
                     /multdbtbs="SigG"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp=1
                     /psig=1
                     /xcortree=885
                     /SigmaFactorBS="gagctgccggattttccggcagctctttttgtgttccggCGA
                     ATAAtcacaacaattccAGCCAAAATAACagcaaatacattttgaaagaaggttcccc
                     a"
                     /listShort="glcU, gdh"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        425984
                     /Source="Nicolas_upshifts"
                     /id="U303"
                     /multdbtbs="SigG"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp=1
                     /psig=1
                     /xcortree=885
                     /SigmaFactorBS="gagctgccggattttccggcagctctttttgtgttccggCGA
                     ATAAtcacaacaattccAGCCAAAATAACagcaaatacattttgaaagaaggttcccc
                     a"
                     /listShort="glcU, gdh"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             426028..426891
                     /gene="glcU"
                     /locus_tag="BSU_03920"
                     /old_locus_tag="BSU03920"
                     /function="16.1: Circulate"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 2a: Function from experimental evidences
                     in other organisms; PubMedId: 10438764, 15849754,
                     16850406, 19054326, 21564334, 27329749; Product type t :
                     transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="glucose uptake protein"
                     /protein_id="NP_388274.1"
                     /db_xref="EnsemblGenomes-Gn:BSU03920"
                     /db_xref="EnsemblGenomes-Tr:CAB12200"
                     /db_xref="GOA:P40420"
                     /db_xref="InterPro:IPR010651"
                     /db_xref="SubtiList:BG11066"
                     /db_xref="UniProtKB/Swiss-Prot:P40420"
                     /translation="MDLLLALLPALFWGSIVLFNVKLGGGPYSQTLGTTIGALIVSIV
                     IYFFVQPVLSLRIFIVGIVSGLFWSLGQANQLKSIQLMGVSKTMPISTGMQLVSTSLF
                     GVIVFREWSTPIAITLGVLALIFIIVGIILTSLEDKNDKKEGEPSNLKKGILILLVST
                     LGYLVYVVVARLFNVSGWSALLPQAIGMVVGGLVLTYRHKPFNKYAIRNILPGLIWAG
                     GNMFLFISQPRVGVATSFSLSQMGIVISTLGGIFILREKKTKRQLIAIAIGIILIIAA
                     AVFLGIAKTNS*"
                     /label="glcU CDS"
     gene            426028..426891
                     /gene="glcU"
                     /locus_tag="BSU_03920"
                     /old_locus_tag="BSU03920"
                     /label="glcU gene"
     CDS             426911..427696
                     /gene="gdh"
                     /locus_tag="BSU_03930"
                     /old_locus_tag="BSU03930"
                     /EC_number="1.1.1.47"
                     /function="16.11: Scavenge (Catabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:2493633, 3141376, 6438057, 16912926"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 2493633, 3141376,
                     6438057, 16912926; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="forespore glucose 1-dehydrogenase"
                     /protein_id="NP_388275.1"
                     /db_xref="EnsemblGenomes-Gn:BSU03930"
                     /db_xref="EnsemblGenomes-Tr:CAB12201"
                     /db_xref="GOA:P12310"
                     /db_xref="InterPro:IPR002347"
                     /db_xref="InterPro:IPR020904"
                     /db_xref="InterPro:IPR036291"
                     /db_xref="SubtiList:BG10545"
                     /db_xref="UniProtKB/Swiss-Prot:P12310"
                     /translation="MYPDLKGKVVAITGAASGLGKAMAIRFGKEQAKVVINYYSNKQD
                     PNEVKEEVIKAGGEAVVVQGDVTKEEDVKNIVQTAIKEFGTLDIMINNAGLENPVPSH
                     EMPLKDWDKVIGTNLTGAFLGSREAIKYFVENDIKGNVINMSSVHEVIPWPLFVHYAA
                     SKGGIKLMTETLALEYAPKGIRVNNIGPGAINTPINAEKFADPKQKADVESMIPMGYI
                     GEPEEIAAVAAWLASKEASYVTGITLFADGGMTQYPSFQAGRG*"
                     /label="gdh CDS"
     gene            426911..427696
                     /gene="gdh"
                     /locus_tag="BSU_03930"
                     /old_locus_tag="BSU03930"
                     /label="gdh gene"
     misc_feature    427016..427035
                     /Source="Nicolas_upshift_promotors"
                     /id="U304"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.692307692307692"
                     /psig="0.732267732267732"
                     /xcortree=1477
                     /SigmaFactorBS="gcttcagggctcggaaaggcgatggccattcgcttcggcaag
                     gagcaggcaaaagtggttATCAACTATTATAGTAATAAacaagatccgaacgaggtaa
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_single_box"
                     /note="Geneious type: promotor_single_box"
     upshifts        427016
                     /Source="Nicolas_upshifts"
                     /id="U304"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.692307692307692"
                     /psig="0.732267732267732"
                     /xcortree=1477
                     /SigmaFactorBS="gcttcagggctcggaaaggcgatggccattcgcttcggcaag
                     gagcaggcaaaagtggttATCAACTATTATAGTAATAAacaagatccgaacgaggtaa
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     downshifts      427104
                     /Source="Nicolas_upshifts"
                     /id="D174"
                     /incds=1
                     /nref=1
                     /ntot=3
                     /MaxReadThrough="6.44884"
                     /MaxDrop="2.47712"
                     /score="-5.4075438"
                     /energy="-11.7"
                     /TU="U303"
                     /idTUdmin="U301"
                     /TUdmin=1188
                     /isTUend="FALSE"
                     /label="downshifts"
     downshifts      427698
                     /Source="Nicolas_upshifts"
                     /id="D175"
                     /incds=0
                     /nref=4
                     /ntot=40
                     /MaxReadThrough="2.7861"
                     /MaxDrop="4.2307"
                     /score="-5.4075438"
                     /energy="-11.7"
                     /TU="U303"
                     /idTUdmin="U303"
                     /TUdmin="-836"
                     /isTUend="FALSE"
                     /label="downshifts"
     CDS             complement(427741..428355)
                     /gene="cutI"
                     /locus_tag="BSU_03940"
                     /old_locus_tag="BSU03940"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 19168619, 22904286,
                     27010565, 26822828; Product type f: factor"
                     /codon_start=1
                     /transl_table=11
                     /product="putative membrane protein involved in copper
                     intake"
                     /protein_id="NP_388276.1"
                     /db_xref="EnsemblGenomes-Gn:BSU03940"
                     /db_xref="EnsemblGenomes-Tr:CAB12202"
                     /db_xref="GOA:P94431"
                     /db_xref="InterPro:IPR012533"
                     /db_xref="SubtiList:BG12045"
                     /db_xref="UniProtKB/Swiss-Prot:P94431"
                     /translation="MLKKIALTLCPAIVGSLLFFTAPASAHVSVKPAESAAGSWETYT
                     MKVPSEKNLPTTKVVLKMPKDVEFQQYEPIPGWKVSTQKHDDKSVSVTWEATDGGIQE
                     GQFQQFTFVAKNPDKAEEAAWDAYQYYKDGSIVEWTGDEDADTPHSITNITSAKQVTD
                     EHGATKTEDDSENSGSSALDITAMVLSAAAIILSVAALVKKKRA*"
                     /label="cutI CDS"
     gene            complement(427741..428355)
                     /gene="cutI"
                     /locus_tag="BSU_03940"
                     /old_locus_tag="BSU03940"
                     /label="cutI gene"
     downshifts      complement(427752)
                     /Source="Nicolas_upshifts"
                     /id="D176"
                     /incds=0
                     /nref=95
                     /ntot=219
                     /MaxReadThrough="0.879290000000001"
                     /MaxDrop="6.67627"
                     /score="21.5633403"
                     /energy="-16"
                     /TU="NA"
                     /idTUdmin="U305"
                     /TUdmin=0
                     /isTUend="TRUE"
                     /label="downshifts"
     CDS             complement(428368..429993)
                     /gene="cutJ"
                     /locus_tag="BSU_03950"
                     /old_locus_tag="BSU03950"
                     /function="16.1: Circulate"
                     /experiment="publication(s) with functional evidences,
                     PMID:15101989, 15849754, 16850406, 19168619, 22904286,
                     23012364"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 15101989, 15849754,
                     16850406, 19168619, 22904286, 23012364; Product type t :
                     transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="copper import permease subunit"
                     /protein_id="NP_388277.2"
                     /db_xref="EnsemblGenomes-Gn:BSU03950"
                     /db_xref="EnsemblGenomes-Tr:CAB12203"
                     /db_xref="GOA:C0SP95"
                     /db_xref="InterPro:IPR007348"
                     /db_xref="InterPro:IPR008457"
                     /db_xref="InterPro:IPR013783"
                     /db_xref="InterPro:IPR014756"
                     /db_xref="InterPro:IPR032693"
                     /db_xref="InterPro:IPR032694"
                     /db_xref="SubtiList:BG12046"
                     /db_xref="UniProtKB/Swiss-Prot:C0SP95"
                     /translation="MKRNRWWIILLLFLVFLPKTSFAHAYIVKSSPGENSELKSAPAQ
                     VEIEFNEPVEEGFHYIKVYNSNGDRVDTDKTEIKKDNHHIMTVKLKKNLPKDVYRAEW
                     NAVSADGHPVSGVIPFSIGKADGGFSSQKAADSALNPGTAADRAILYTALSLFIGTVF
                     FHLFWYKGKSEQLVKRTRRILTGSIAALGLALLLQLPIQTKANAGGGWGSAFQPGYIR
                     ETLFETAGGSIWIIQAALFVLLALSVIPAIRKNRFSSFGYWTAPLIFFFGLLLAKAFT
                     GHAAVVEEKTVGILMDFLHLTSASIWVGGIAALVLLLSKEWRQPDKTLAWETVRRFSP
                     WALTAVGVILFSGLLNGFFIIRSMDSLFHTAYGQALLVKSGLFVFMLVLGAIHFLLTR
                     KQRRTGISRTLKAEWAIGIAVLITAAVFTSLPSPPEPAPEPFYQTKAIENGQSVSLSI
                     SPNQPGKNVFELRVTDHNGDPVKNIQQITLTVYKTGLSGSENKSTFTLKEKTKGVFQD
                     QNLSINEKGNWKIKVHGLTGDFNEINIMFTKTN*"
                     /label="cutJ CDS"
     gene            complement(428368..429993)
                     /gene="cutJ"
                     /locus_tag="BSU_03950"
                     /old_locus_tag="BSU03950"
                     /label="cutJ gene"
     CDS             complement(430028..430600)
                     /gene="cutR"
                     /locus_tag="BSU_03960"
                     /old_locus_tag="BSU03960"
                     /function="16.3: Control"
                     /experiment="publication(s) with functional evidences,
                     PMID:15101989, 22904286, 23012364"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 15101989, 22904286,
                     23012364; Product type r: regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator of copper intake
                     (CutR-Cu(+))"
                     /protein_id="NP_388278.1"
                     /db_xref="EnsemblGenomes-Gn:BSU03960"
                     /db_xref="EnsemblGenomes-Tr:CAB12204"
                     /db_xref="GOA:P94433"
                     /db_xref="InterPro:IPR001034"
                     /db_xref="InterPro:IPR008719"
                     /db_xref="InterPro:IPR036388"
                     /db_xref="InterPro:IPR036390"
                     /db_xref="SubtiList:BG12047"
                     /db_xref="UniProtKB/Swiss-Prot:P94433"
                     /translation="MLPINRQQHILKWLKEEGSLRISDISARFGVSEMTVYRDVNQLV
                     QSNQVIKTAGGITLPVRTPQTDHMCSYCLKPVNQAHSVQLITVNQDIEQLCCAHCAFL
                     RYADKTEEVSHLICRDFLLQTTVSAGSAYFVVNAELNLHCCQPQAIPFATLDHAERFQ
                     KGFGGAVCTFDQALEDMLQDRKKRCTCTKK*"
                     /label="cutR CDS"
     gene            complement(430028..430600)
                     /gene="cutR"
                     /locus_tag="BSU_03960"
                     /old_locus_tag="BSU03960"
                     /label="cutR gene"
     promotor_-10    complement(430622..430641)
                     /Source="Nicolas_upshift_promotors"
                     /id="U305"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.944055944055944"
                     /psig="0.999000999001"
                     /xcortree=1591
                     /SigmaFactorBS="tgttcaacacattttcacattttttatcatccactTACTTGT
                     CtccgtctctaaaaTCCTCTACGCTTAAATAGATcttaatgaagagggtgtatgaatg
                     c"
                     /listShort="ycnK, ycnJ, ycnI"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(430637)
                     /Source="Nicolas_upshifts"
                     /id="U305"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.944055944055944"
                     /psig="0.999000999001"
                     /xcortree=1591
                     /SigmaFactorBS="tgttcaacacattttcacattttttatcatccactTACTTGT
                     CtccgtctctaaaaTCCTCTACGCTTAAATAGATcttaatgaagagggtgtatgaatg
                     c"
                     /listShort="ycnK, ycnJ, ycnI"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(430655..430662)
                     /Source="Nicolas_upshift_promotors"
                     /id="U305"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.944055944055944"
                     /psig="0.999000999001"
                     /xcortree=1591
                     /SigmaFactorBS="tgttcaacacattttcacattttttatcatccactTACTTGT
                     CtccgtctctaaaaTCCTCTACGCTTAAATAGATcttaatgaagagggtgtatgaatg
                     c"
                     /listShort="ycnK, ycnJ, ycnI"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     misc_feature    430722..430741
                     /Source="Nicolas_upshift_promotors"
                     /id="U306"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.764235764235764"
                     /psig="0.999000999001"
                     /xcortree=2504
                     /SigmaFactorBS="aaaaatgtgaaaatgtgttgaacagcaacaaaacgaaacaga
                     agggacTCTGGTATAATAGACAGATGgaatagaaagtgaggaataccctatgaaagaa
                     a"
                     /listShort="ycnL"
                     /GFF_Attribute="listLong"
                     /label="promotor_single_box"
                     /note="Geneious type: promotor_single_box"
     upshifts        430734
                     /Source="Nicolas_upshifts"
                     /id="U306"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.764235764235764"
                     /psig="0.999000999001"
                     /xcortree=2504
                     /SigmaFactorBS="aaaaatgtgaaaatgtgttgaacagcaacaaaacgaaacaga
                     agggacTCTGGTATAATAGACAGATGgaatagaaagtgaggaataccctatgaaagaa
                     a"
                     /listShort="ycnL"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             430765..431118
                     /gene="ycnL"
                     /locus_tag="BSU_03970"
                     /old_locus_tag="BSU03970"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 15849754, 16850406,
                     18307109, 27010565; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative reductase or disulfide isomerase"
                     /protein_id="NP_388279.1"
                     /db_xref="EnsemblGenomes-Gn:BSU03970"
                     /db_xref="EnsemblGenomes-Tr:CAB12205"
                     /db_xref="GOA:P94434"
                     /db_xref="SubtiList:BG12048"
                     /db_xref="UniProtKB/Swiss-Prot:P94434"
                     /translation="MKETPCPNCGKPLTGDMVRSSNVPCQFRCGHCRERLYEYKVSAP
                     IMLVSLAAIVLLIYLLMLLRNAAGSVLPAVQHVPMAVFALVCAYPVFIVSERMIAKYV
                     IQNGNIIYRGKRKGS*"
                     /label="ycnL CDS"
     gene            430765..431118
                     /gene="ycnL"
                     /locus_tag="BSU_03970"
                     /old_locus_tag="BSU03970"
                     /label="ycnL gene"
     downshifts      431089
                     /Source="Nicolas_upshifts"
                     /id="D177"
                     /incds=0
                     /nref=136
                     /ntot=248
                     /MaxReadThrough="0.860829999999999"
                     /MaxDrop="6.25982"
                     /score="38.4886131"
                     /energy="-13.4"
                     /TU="NA"
                     /idTUdmin="U306"
                     /TUdmin="-19"
                     /isTUend="TRUE"
                     /label="downshifts"
     promotor_-35    431182..431189
                     /Source="Nicolas_upshift_promotors"
                     /id="U307"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.938061938061938"
                     /psig=1
                     /xcortree=1546
                     /SigmaFactorBS="tgtcacagtcatgtgccaaagtcctctttactttCAATTGTA
                     tagggactgtaagCGTTTTAACATAGAGTCAAAgggaagcatcattctctgaacatat
                     t"
                     /listShort="S132, mtlA, mtlF, mtlD, ycsA, sipU, S133"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    431203..431222
                     /Source="Nicolas_upshift_promotors"
                     /id="U307"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.938061938061938"
                     /psig=1
                     /xcortree=1546
                     /SigmaFactorBS="tgtcacagtcatgtgccaaagtcctctttactttCAATTGTA
                     tagggactgtaagCGTTTTAACATAGAGTCAAAgggaagcatcattctctgaacatat
                     t"
                     /listShort="S132, mtlA, mtlF, mtlD, ycsA, sipU, S133"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        431208
                     /Source="Nicolas_upshifts"
                     /id="U307"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.938061938061938"
                     /psig=1
                     /xcortree=1546
                     /SigmaFactorBS="tgtcacagtcatgtgccaaagtcctctttactttCAATTGTA
                     tagggactgtaagCGTTTTAACATAGAGTCAAAgggaagcatcattctctgaacatat
                     t"
                     /listShort="S132, mtlA, mtlF, mtlD, ycsA, sipU, S133"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     S_feature       431218..431290
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_449651_449723"
                     /HighExp="S0, dia5, Gly, G135, B60, T0.30H, BT, G180,
                     G150, M40t45"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig=1
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S132"
     CDS             431291..432727
                     /gene="mtlA"
                     /locus_tag="BSU_03981"
                     /old_locus_tag="BSU03981"
                     /EC_number="2.7.1.197"
                     /function="16.1: Circulate"
                     /function="16.11: Scavenge (Catabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:12897001, 23279188"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 12897001, 23279188;
                     Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphotransferase system (PTS)
                     mannitol-specific enzyme IICB component"
                     /protein_id="NP_388280.2"
                     /db_xref="EnsemblGenomes-Gn:BSU03981"
                     /db_xref="EnsemblGenomes-Tr:CAB12206"
                     /db_xref="GOA:P42956"
                     /db_xref="InterPro:IPR003352"
                     /db_xref="InterPro:IPR003501"
                     /db_xref="InterPro:IPR004718"
                     /db_xref="InterPro:IPR013011"
                     /db_xref="InterPro:IPR013014"
                     /db_xref="InterPro:IPR029503"
                     /db_xref="InterPro:IPR036095"
                     /db_xref="SubtiList:BG11215"
                     /db_xref="UniProtKB/Swiss-Prot:P42956"
                     /translation="MQQQEQQQGGMKVKVQRFGSYLSGMIMPNIGAFIAWGIITALFI
                     PAGWFPNEQLNTLVSPMITYLLPLLIAYTGGKMIYDHRGGVVGATAAIGVIVGSDIPM
                     FLGAMIMGPLGGYLIKQTDKLFKDKVKQGFEMLINNFTAGIVGAALTILAFYAIGPVV
                     LTLNKLLAAGVEVIVHANLLPVASVFVEPAKVLFLNNAINHGILSPIGIEQASQTGKS
                     ILFLVEANPGPGLGILLAYMFFGKGSSKSTAPGAAIIHFFGGIHEIYFPYILMKPALI
                     LAAIAGGASGLLTFTIFNAGLVAAASPGSIIALMAMTPRGGYFGVLAGVLVAAAVSFI
                     VSAVILKSSKASEEDLAAATEKMQSMKGKKSQAAAALEAEQAKAEEASELSPESVNKI
                     IFACDAGMGSSAMGASILRNKVKKAELDISVTNTAINNLPSDADIVITHKDLTDRAKA
                     KLPNATHISVDNFLNSPKYDELIEKLKK*"
                     /label="mtlA CDS"
     gene            431291..432727
                     /gene="mtlA"
                     /locus_tag="BSU_03981"
                     /old_locus_tag="BSU03981"
                     /label="mtlA gene"
     CDS             432752..433183
                     /gene="mtlF"
                     /locus_tag="BSU_03982"
                     /old_locus_tag="BSU03982"
                     /EC_number="2.7.1.197"
                     /function="16.1: Circulate"
                     /function="16.11: Scavenge (Catabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:12897001, 23279188"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 12897001, 23279188;
                     Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphotransferase system (PTS)
                     mannitol-specific enzyme IIA component"
                     /protein_id="YP_003097678.1"
                     /db_xref="EnsemblGenomes-Gn:BSU03982"
                     /db_xref="EnsemblGenomes-Tr:CAX52549"
                     /db_xref="GOA:C0H3V2"
                     /db_xref="InterPro:IPR002178"
                     /db_xref="InterPro:IPR016152"
                     /db_xref="UniProtKB/Swiss-Prot:C0H3V2"
                     /translation="MQVLAKENIKLNQTVSSKEEAIKLAGQTLIDNGYVTEDYISKMF
                     EREETSSTFMGNFIAIPHGTEEAKSEVLHSGISIIQIPEGVEYGEGNTAKVVFGIAGK
                     NNEHLDILSNIAIICSEEENIERLISAKSEEDLIAIFNEVN*"
                     /label="mtlF CDS"
     gene            432752..433183
                     /gene="mtlF"
                     /locus_tag="BSU_03982"
                     /old_locus_tag="BSU03982"
                     /label="mtlF gene"
     CDS             433185..434306
                     /gene="mtlD"
                     /locus_tag="BSU_03990"
                     /old_locus_tag="BSU03990"
                     /EC_number="1.1.1.17"
                     /function="16.11: Scavenge (Catabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:12897001, 22014119, 23279188"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 12897001, 22014119,
                     23279188; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="mannitol-1-phosphate 5-dehydrogenase"
                     /protein_id="NP_388281.2"
                     /db_xref="EnsemblGenomes-Gn:BSU03990"
                     /db_xref="EnsemblGenomes-Tr:CAB12207"
                     /db_xref="GOA:P42957"
                     /db_xref="InterPro:IPR000669"
                     /db_xref="InterPro:IPR008927"
                     /db_xref="InterPro:IPR013118"
                     /db_xref="InterPro:IPR013131"
                     /db_xref="InterPro:IPR013328"
                     /db_xref="InterPro:IPR023027"
                     /db_xref="InterPro:IPR023028"
                     /db_xref="InterPro:IPR036291"
                     /db_xref="SubtiList:BG11216"
                     /db_xref="UniProtKB/Swiss-Prot:P42957"
                     /translation="MIALHFGAGNIGRGFIGALLHHSGYDVVFADVNETMVSLLNEKK
                     EYTVELAEEGRSSEIIGPVSAINSGSQTEELYRLMNEAALITTAVGPNVLKLIAPSIA
                     EGLRRRNTANTLNIIACENMIGGSSFLKKEIYSHLTEAEQKSVSETVGFPNSAVDRIV
                     PIQHHEDPLKVSVEPFFEWVIDESGFKGKTPVINGALFVDDLTPYIERKLFTVNTGHA
                     VTAYVGYQRGLKTVKEAIDHPEIRRVVHSALLETGDYLVKSYGFKQTEHEQYIKKIIG
                     RFENPFISDDVTRVARSPLRKLGENDRLVGPAKKIKEPNALAEGIAAALRFDFTGDPE
                     AVELQALIEEKGYSGVLQEVCGIQSHEPLHAIILKKLNQ*"
                     /label="mtlD CDS"
     gene            433185..434306
                     /gene="mtlD"
                     /locus_tag="BSU_03990"
                     /old_locus_tag="BSU03990"
                     /label="mtlD gene"
     downshifts      434289
                     /Source="Nicolas_upshifts"
                     /id="D178"
                     /incds=0
                     /nref=46
                     /ntot=156
                     /MaxReadThrough="5.56503"
                     /MaxDrop="4.72154"
                     /score="32.3837677"
                     /energy="-13.4"
                     /TU="U307"
                     /idTUdmin="U308"
                     /TUdmin="-1254"
                     /isTUend="FALSE"
                     /label="downshifts"
     promotor_-35    434335..434338
                     /Source="Nicolas_upshift_promotors"
                     /id="U308"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.964035964035964"
                     /psig=1
                     /xcortree=1552
                     /SigmaFactorBS="ttaatcaataaccgaccacccgtgacacaatgtcacgggCTT
                     TttttactatctcgcaATCTAGTATAATAGAAAGCGcttacgataacaggggaaggag
                     a"
                     /listShort="ycsA"
                     /listLong="sipU, S133, ycsD"
                     /label="promotor_-35"
     promotor_-10    434354..434373
                     /Source="Nicolas_upshift_promotors"
                     /id="U308"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.964035964035964"
                     /psig=1
                     /xcortree=1552
                     /SigmaFactorBS="ttaatcaataaccgaccacccgtgacacaatgtcacgggCTT
                     TttttactatctcgcaATCTAGTATAATAGAAAGCGcttacgataacaggggaaggag
                     a"
                     /listShort="ycsA"
                     /listLong="sipU, S133, ycsD"
                     /label="promotor_-10"
     upshifts        434356
                     /Source="Nicolas_upshifts"
                     /id="U308"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.964035964035964"
                     /psig=1
                     /xcortree=1552
                     /SigmaFactorBS="ttaatcaataaccgaccacccgtgacacaatgtcacgggCTT
                     TttttactatctcgcaATCTAGTATAATAGAAAGCGcttacgataacaggggaaggag
                     a"
                     /listShort="ycsA"
                     /listLong="sipU, S133, ycsD"
                     /label="upshifts"
     CDS             434397..435461
                     /gene="ycsA"
                     /locus_tag="BSU_04000"
                     /old_locus_tag="BSU04000"
                     /EC_number="1.1.1.93"
                     /EC_number="1.1.1.83"
                     /EC_number="4.1.1.73"
                     /function="16.11: Scavenge (Catabolism)"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 2a: Function from experimental evidences
                     in other organisms; PubMedId: 10568751, 12356321; Product
                     type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative tartrate dehydrogenase"
                     /protein_id="NP_388282.3"
                     /db_xref="EnsemblGenomes-Gn:BSU04000"
                     /db_xref="EnsemblGenomes-Tr:CAB12208"
                     /db_xref="GOA:P42958"
                     /db_xref="InterPro:IPR011829"
                     /db_xref="InterPro:IPR019818"
                     /db_xref="InterPro:IPR024084"
                     /db_xref="SubtiList:BG11222"
                     /db_xref="UniProtKB/Swiss-Prot:P42958"
                     /translation="MTMKQFEIAAIPGDGVGKEVVAAAEKVLHTAAEVHGGLSFSFTA
                     FPWSCDYYLEHGKMMPEDGIHTLTQFEAVFLGAVGNPKLVPDHISLWGLLLKIRRELE
                     LSINMRPAKQMAGITSPLLHPNDFDFVVIRENSEGEYSEVGGRIHRGDDEIAIQNAVF
                     TRKATERVMRFAFELAKKRRSHVTSATKSNGIYHAMPFWDEVFQQTAADYSGIETSSQ
                     HIDALAAFFVTRPETFDVIVASNLFGDILTDISSSLMGSIGIAPSANINPSGKYPSMF
                     EPVHGSAPDIAGQGLANPIGQIWTAKLMLDHFGEEELGAKILDVMEQVTADGIKTRDI
                     GGQSTTAEVTDEICSRLRKL*"
                     /label="ycsA CDS"
     gene            434397..435461
                     /gene="ycsA"
                     /locus_tag="BSU_04000"
                     /old_locus_tag="BSU04000"
                     /label="ycsA gene"
     promotor_-35    434631..434639
                     /Source="Nicolas_upshift_promotors"
                     /id="U309"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp="0.96903096903097"
                     /psig="0.96903096903097"
                     /xcortree=1234
                     /SigmaFactorBS="atttgaagcagtttttttgggagctgtcGGAAATCCGaagct
                     ggttcccgATCATATATCGTTATGGGGGctgctgctgaaaatccggagggagcttgag
                     c"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    434653..434672
                     /Source="Nicolas_upshift_promotors"
                     /id="U309"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp="0.96903096903097"
                     /psig="0.96903096903097"
                     /xcortree=1234
                     /SigmaFactorBS="atttgaagcagtttttttgggagctgtcGGAAATCCGaagct
                     ggttcccgATCATATATCGTTATGGGGGctgctgctgaaaatccggagggagcttgag
                     c"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        434663
                     /Source="Nicolas_upshifts"
                     /id="U309"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp="0.96903096903097"
                     /psig="0.96903096903097"
                     /xcortree=1234
                     /SigmaFactorBS="atttgaagcagtttttttgggagctgtcGGAAATCCGaagct
                     ggttcccgATCATATATCGTTATGGGGGctgctgctgaaaatccggagggagcttgag
                     c"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     downshifts      435455
                     /Source="Nicolas_upshifts"
                     /id="D179"
                     /incds=0
                     /nref=7
                     /ntot=41
                     /MaxReadThrough="4.24123"
                     /MaxDrop="4.42639"
                     /score="9.70532694"
                     /energy="-11.6"
                     /TU="U307,U308"
                     /idTUdmin="U308"
                     /TUdmin="-88"
                     /isTUend="FALSE"
                     /label="downshifts"
     promotor_-35    435528..435535
                     /Source="Nicolas_upshift_promotors"
                     /id="U310"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.567432567432567"
                     /psig="0.996003996003996"
                     /xcortree=2303
                     /SigmaFactorBS="atttccttacgaaaatttccacgaaagTCTAACCAagcagat
                     ccaaaTGCTGTATAATAATTTGGAAttcttaggaaagcatcgggtgaaggaagttgaa
                     t"
                     /listShort="sipU, S133, ycsD"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    435548..435567
                     /Source="Nicolas_upshift_promotors"
                     /id="U310"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.567432567432567"
                     /psig="0.996003996003996"
                     /xcortree=2303
                     /SigmaFactorBS="atttccttacgaaaatttccacgaaagTCTAACCAagcagat
                     ccaaaTGCTGTATAATAATTTGGAAttcttaggaaagcatcgggtgaaggaagttgaa
                     t"
                     /listShort="sipU, S133, ycsD"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        435561
                     /Source="Nicolas_upshifts"
                     /id="U310"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.567432567432567"
                     /psig="0.996003996003996"
                     /xcortree=2303
                     /SigmaFactorBS="atttccttacgaaaatttccacgaaagTCTAACCAagcagat
                     ccaaaTGCTGTATAATAATTTGGAAttcttaggaaagcatcgggtgaaggaagttgaa
                     t"
                     /listShort="sipU, S133, ycsD"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             435596..436159
                     /gene="sipU"
                     /locus_tag="BSU_04010"
                     /old_locus_tag="BSU04010"
                     /EC_number="3.4.21.89"
                     /function="16.1: Circulate"
                     /function="16.2: Construct biomass (Anabolism)"
                     /function="16.6: Maintain"
                     /experiment="publication(s) with functional evidences,
                     PMID:9325333, 10198007, 11856304, 14568161"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 9325333, 10198007,
                     11856304, 14568161; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="type I signal peptidase"
                     /protein_id="NP_388283.1"
                     /db_xref="EnsemblGenomes-Gn:BSU04010"
                     /db_xref="EnsemblGenomes-Tr:CAB12209"
                     /db_xref="GOA:P42959"
                     /db_xref="InterPro:IPR000223"
                     /db_xref="InterPro:IPR015927"
                     /db_xref="InterPro:IPR019756"
                     /db_xref="InterPro:IPR019757"
                     /db_xref="InterPro:IPR019758"
                     /db_xref="InterPro:IPR036286"
                     /db_xref="SubtiList:BG11223"
                     /db_xref="UniProtKB/Swiss-Prot:P42959"
                     /translation="MNAKTITLKKKRKIKTIVVLSIIMIAALIFTIRLVFYKPFLIEG
                     SSMAPTLKDSERILVDKAVKWTGGFHRGDIIVIHDKKSGRSFVKRLIGLPGDSIKMKN
                     DQLYINDKKVEEPYLKEYKQEVKESGVTLTGDFEVEVPSGKYFVMGDNRLNSLDSRNG
                     MGMPSEDDIIGTESLVFYPFGEMRQAK*"
                     /label="sipU CDS"
     gene            435596..436159
                     /gene="sipU"
                     /locus_tag="BSU_04010"
                     /old_locus_tag="BSU04010"
                     /label="sipU gene"
     S_feature       436160..436884
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_454593_455317"
                     /HighExp="G150, Oxctl, Lbexp, G135, Paraq, dia0, LBGexp,
                     Mt0, G180, dia15"
                     /AntisenseName="yczH"
                     /AntisenseCor="0.134432865921808"
                     /AntisenseRegPval="-1.6"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA, SigA"
                     /TUshortPSig="0.996, 1"
                     /TUlongSig="SigA"
                     /TUlongPSig=1
                     /label="S133"
     CDS             complement(436219..436827)
                     /gene="yczH"
                     /locus_tag="BSU_04020"
                     /old_locus_tag="BSU04020"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative hydrolase"
                     /protein_id="NP_388284.2"
                     /db_xref="EnsemblGenomes-Gn:BSU04020"
                     /db_xref="EnsemblGenomes-Tr:CAB12210"
                     /db_xref="GOA:O31482"
                     /db_xref="InterPro:IPR002925"
                     /db_xref="InterPro:IPR029058"
                     /db_xref="SubtiList:BG12782"
                     /db_xref="UniProtKB/Swiss-Prot:O31482"
                     /translation="MFPKPLVILAHEIYGVNSHMKKMGRLIKMAGYDVLTPNLLGEDE
                     VYTLKEEKTAYEQFTKHERLKTGETIIQNVIRQNAGRHIFVIGFSVGATIAWKCSSMP
                     EVSGSVCYYGSRIRDSLHHMPACPVLLFFPNYEPSFDVALLIKKLREKQHTHLEIYQF
                     DALHGFANPDSVYFNRALFFKTLSIIKNGAESRLRTVSSSFF*"
                     /label="yczH CDS"
     gene            complement(436219..436827)
                     /gene="yczH"
                     /locus_tag="BSU_04020"
                     /old_locus_tag="BSU04020"
                     /label="yczH gene"
     misc_feature    complement(436845..436864)
                     /Source="Nicolas_upshift_promotors"
                     /id="U311"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.397602397602398"
                     /psig="0.993006993006993"
                     /xcortree=2931
                     /SigmaFactorBS="aagataatgagttcattttatatctcctttttttgaccatta
                     tatctcagcctaaagtgaaacgATAGGATATAATGGAAAAAAcacaaaaggaggccgt
                     t"
                     /listShort="yczH"
                     /GFF_Attribute="listLong"
                     /label="promotor_single_box"
                     /note="Geneious type: promotor_single_box"
     promotor_-35    436861..436867
                     /Source="Nicolas_upshift_promotors"
                     /id="U312"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.572427572427572"
                     /psig="0.995004995004995"
                     /xcortree=3001
                     /SigmaFactorBS="ataacggcctccttttgtgttttttccattatatcCTATCGT
                     ttcactttaggcTGAGATATAATGGTCAAAAAaaggagatataaaatgaactcattat
                     c"
                     /listShort="ycsD"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     upshifts        complement(436868)
                     /Source="Nicolas_upshifts"
                     /id="U311"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.397602397602398"
                     /psig="0.993006993006993"
                     /xcortree=2931
                     /SigmaFactorBS="aagataatgagttcattttatatctcctttttttgaccatta
                     tatctcagcctaaagtgaaacgATAGGATATAATGGAAAAAAcacaaaaggaggccgt
                     t"
                     /listShort="yczH"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-10    436880..436899
                     /Source="Nicolas_upshift_promotors"
                     /id="U312"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.572427572427572"
                     /psig="0.995004995004995"
                     /xcortree=3001
                     /SigmaFactorBS="ataacggcctccttttgtgttttttccattatatcCTATCGT
                     ttcactttaggcTGAGATATAATGGTCAAAAAaaggagatataaaatgaactcattat
                     c"
                     /listShort="ycsD"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        436886
                     /Source="Nicolas_upshifts"
                     /id="U312"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.572427572427572"
                     /psig="0.995004995004995"
                     /xcortree=3001
                     /SigmaFactorBS="ataacggcctccttttgtgttttttccattatatcCTATCGT
                     ttcactttaggcTGAGATATAATGGTCAAAAAaaggagatataaaatgaactcattat
                     c"
                     /listShort="ycsD"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             436913..437305
                     /gene="ycsD"
                     /locus_tag="BSU_04030"
                     /old_locus_tag="BSU04030"
                     /EC_number="4.2.1.-"
                     /function="16.2: Construct biomass (Anabolism)"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 12682299, 16291680,
                     22720735; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative hydroxyacyl-(acyl carrier protein)
                     dehydratase"
                     /protein_id="NP_388285.2"
                     /db_xref="EnsemblGenomes-Gn:BSU04030"
                     /db_xref="EnsemblGenomes-Tr:CAB12211"
                     /db_xref="InterPro:IPR013114"
                     /db_xref="InterPro:IPR029069"
                     /db_xref="SubtiList:BG11225"
                     /db_xref="UniProtKB/Swiss-Prot:P42961"
                     /translation="MNSLSLPHRYPFLFIDGVTDSEPGKHAAAYKLISENDWFITDTQ
                     TEMPFSLVIEALAQTAAFTGITDENSLGLLSSVKKAEKLGEAVPGDRLDLTFEVTRNR
                     RGFVFGHAKASVGEQPVAEAEIGIYIEK*"
                     /label="ycsD CDS"
     gene            436913..437305
                     /gene="ycsD"
                     /locus_tag="BSU_04030"
                     /old_locus_tag="BSU04030"
                     /label="ycsD gene"
     downshifts      437282
                     /Source="Nicolas_upshifts"
                     /id="D180"
                     /incds=0
                     /nref=23
                     /ntot=189
                     /MaxReadThrough="1.8721"
                     /MaxDrop="3.42324"
                     /score="-5.4921522"
                     /energy="-13.6"
                     /TU="NA"
                     /idTUdmin="U310"
                     /TUdmin=0
                     /isTUend="TRUE"
                     /label="downshifts"
     CDS             complement(437338..437502)
                     /gene="yczO"
                     /locus_tag="BSU_04039"
                     /old_locus_tag="BSU04039"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved protein of unknown function"
                     /protein_id="YP_003097679.1"
                     /db_xref="EnsemblGenomes-Gn:BSU04039"
                     /db_xref="EnsemblGenomes-Tr:CAX52550"
                     /db_xref="UniProtKB/Swiss-Prot:C0H3V3"
                     /translation="MTEKKQQNKPNENPEHNDLTDPIPNEELKENMNDEKHKRQQRDN
                     SQSERDYDTK*"
                     /label="yczO CDS"
     gene            complement(437338..437502)
                     /gene="yczO"
                     /locus_tag="BSU_04039"
                     /old_locus_tag="BSU04039"
                     /label="yczO gene"
     downshifts      complement(437358)
                     /Source="Nicolas_upshifts"
                     /id="D181"
                     /incds=0
                     /nref=101
                     /ntot=193
                     /MaxReadThrough="1.44096"
                     /MaxDrop="6.55741"
                     /score="22.582242"
                     /energy="-10.6"
                     /TU="NA"
                     /idTUdmin="U313"
                     /TUdmin=0
                     /isTUend="TRUE"
                     /label="downshifts"
     promotor_-10    complement(437512..437530)
                     /Source="Nicolas_upshift_promotors"
                     /id="U313"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp="0.992007992007992"
                     /psig="0.992007992007992"
                     /xcortree=206
                     /SigmaFactorBS="ttctaatacattatacccagcgggacaaaaaagcgatttcct
                     aTGTTTGAggagaatgaataagAGGAAAACAAACGGTGAGGtgatcaaacatgacaga
                     a"
                     /listShort="yczO"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(437534)
                     /Source="Nicolas_upshifts"
                     /id="U313"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp="0.992007992007992"
                     /psig="0.992007992007992"
                     /xcortree=206
                     /SigmaFactorBS="ttctaatacattatacccagcgggacaaaaaagcgatttcct
                     aTGTTTGAggagaatgaataagAGGAAAACAAACGGTGAGGtgatcaaacatgacaga
                     a"
                     /listShort="yczO"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(437545..437551)
                     /Source="Nicolas_upshift_promotors"
                     /id="U313"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp="0.992007992007992"
                     /psig="0.992007992007992"
                     /xcortree=206
                     /SigmaFactorBS="ttctaatacattatacccagcgggacaaaaaagcgatttcct
                     aTGTTTGAggagaatgaataagAGGAAAACAAACGGTGAGGtgatcaaacatgacaga
                     a"
                     /listShort="yczO"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-35    437564..437571
                     /Source="Nicolas_upshift_promotors"
                     /id="U314"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.809190809190809"
                     /psig=1
                     /xcortree=2352
                     /SigmaFactorBS="cctcttattcattctcctcaaacataggaaatcgctTTTTTG
                     TCccgctgggtataaTGTATTAGAATAGAGAGAAGcacaacaaaaagataaagagagg
                     t"
                     /listShort="ycsE"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    437585..437604
                     /Source="Nicolas_upshift_promotors"
                     /id="U314"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.809190809190809"
                     /psig=1
                     /xcortree=2352
                     /SigmaFactorBS="cctcttattcattctcctcaaacataggaaatcgctTTTTTG
                     TCccgctgggtataaTGTATTAGAATAGAGAGAAGcacaacaaaaagataaagagagg
                     t"
                     /listShort="ycsE"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        437588
                     /Source="Nicolas_upshifts"
                     /id="U314"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.809190809190809"
                     /psig=1
                     /xcortree=2352
                     /SigmaFactorBS="cctcttattcattctcctcaaacataggaaatcgctTTTTTG
                     TCccgctgggtataaTGTATTAGAATAGAGAGAAGcacaacaaaaagataaagagagg
                     t"
                     /listShort="ycsE"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             437635..438384
                     /gene="ribZ"
                     /locus_tag="BSU_04040"
                     /old_locus_tag="BSU04040"
                     /EC_number="3.1.3.-"
                     /function="4.9: Riboflavin, FMN, and FAD"
                     /function="16.11: Scavenge (Catabolism)"
                     /function="16.8: Protect"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 1b: Function from experimental evidences
                     in the studied species; PubMedId: 26316208, 27435445,
                     27784292; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="5-amino-6-ribitylamino-2,4(1H,
                     3H)-pyrimidinedione 5'-phosphate phosphatase / 5'
                     nucleotidase"
                     /protein_id="NP_388286.2"
                     /db_xref="EnsemblGenomes-Gn:BSU04040"
                     /db_xref="EnsemblGenomes-Tr:CAB12212"
                     /db_xref="GOA:P42962"
                     /db_xref="InterPro:IPR006379"
                     /db_xref="InterPro:IPR023214"
                     /db_xref="InterPro:IPR036412"
                     /db_xref="SubtiList:BG11226"
                     /db_xref="UniProtKB/Swiss-Prot:P42962"
                     /translation="MSVQREDVDIKLIAIDMDGTLLNDEQLISDENRKAIREAEDKGV
                     YVVISTGRTLMTCRELAESLKLSSFLITANGSEIWDSNFNLVERKLLHTDHIQMMWDL
                     RNKHNTNFWASTVNKVWRGEFPENITDHEWLKFGFDIEDDDIRNEVLEELRKNKELEI
                     TNSSPTNIEVNALGINKAAALAKVTEKLGFTMENVMAMGDSLNDIAMIKEAGLGVAMG
                     NAQDIVKETADYITDTNIEDGVAKAIRHWVL*"
                     /label="ribZ CDS"
     gene            437635..438384
                     /gene="ribZ"
                     /locus_tag="BSU_04040"
                     /old_locus_tag="BSU04040"
                     /label="ribZ gene"
     downshifts      438361
                     /Source="Nicolas_upshifts"
                     /id="D182"
                     /incds=0
                     /nref=219
                     /ntot=253
                     /MaxReadThrough="3.23506"
                     /MaxDrop="6.84998"
                     /score="19.5535298"
                     /energy="-11.7"
                     /TU="NA"
                     /idTUdmin="U314"
                     /TUdmin="-21"
                     /isTUend="TRUE"
                     /label="downshifts"
     downshifts      complement(438437)
                     /Source="Nicolas_upshifts"
                     /id="D183"
                     /incds=0
                     /nref=1
                     /ntot=7
                     /MaxReadThrough="0.52326"
                     /MaxDrop="2.84763"
                     /score="25.9755124"
                     /energy="-11.7"
                     /TU="NA"
                     /idTUdmin="U313"
                     /TUdmin="-1079"
                     /isTUend="FALSE"
                     /label="downshifts"
     promotor_-35    438467..438473
                     /Source="Nicolas_upshift_promotors"
                     /id="U315"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.386613386613387"
                     /psig="0.996003996003996"
                     /xcortree=2194
                     /SigmaFactorBS="attctgggaccatggtaggttttctgacaaaagtATTTCACa
                     aactgatatgatTCACTTATAATGAAATAAAGttcaaaaattcggaatagtcgttccg
                     a"
                     /listShort="S134, ycsF, ycsG, ycsI, kipI, kipA, kipR,
                     lipC"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    438487..438506
                     /Source="Nicolas_upshift_promotors"
                     /id="U315"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.386613386613387"
                     /psig="0.996003996003996"
                     /xcortree=2194
                     /SigmaFactorBS="attctgggaccatggtaggttttctgacaaaagtATTTCACa
                     aactgatatgatTCACTTATAATGAAATAAAGttcaaaaattcggaatagtcgttccg
                     a"
                     /listShort="S134, ycsF, ycsG, ycsI, kipI, kipA, kipR,
                     lipC"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     S_feature       438493..438589
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_456926_457022"
                     /HighExp="S1, Cold, S0, GM 5, BMM, MG 25, Lbtran, aero, GM
                     10, HiOs"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.996"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S134"
     upshifts        438493
                     /Source="Nicolas_upshifts"
                     /id="U315"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.386613386613387"
                     /psig="0.996003996003996"
                     /xcortree=2194
                     /SigmaFactorBS="attctgggaccatggtaggttttctgacaaaagtATTTCACa
                     aactgatatgatTCACTTATAATGAAATAAAGttcaaaaattcggaatagtcgttccg
                     a"
                     /listShort="S134, ycsF, ycsG, ycsI, kipI, kipA, kipR,
                     lipC"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             438590..439363
                     /gene="pxpA"
                     /locus_tag="BSU_04050"
                     /old_locus_tag="BSU04050"
                     /EC_number="3.5.2.9"
                     /function="16.6: Maintain"
                     /function="16.11: Scavenge (Catabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:9334321, 28830929"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 9334321, 28830929;
                     Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="oxoprolinase subunit A"
                     /protein_id="NP_388287.3"
                     /db_xref="EnsemblGenomes-Gn:BSU04050"
                     /db_xref="EnsemblGenomes-Tr:CAB12213"
                     /db_xref="GOA:P42963"
                     /db_xref="InterPro:IPR005501"
                     /db_xref="InterPro:IPR011330"
                     /db_xref="SubtiList:BG11227"
                     /db_xref="UniProtKB/Swiss-Prot:P42963"
                     /translation="MFQIDLNCDLGESFGAYKIGLDQDILEYVTSANIACGFHAGDPS
                     VMRKTVALAAERGVKMGAHPGLPDLLGFGRRNMAISPEEAYDLVVYQIGALSGFLKAE
                     GLHMQHVKPHGALYNMAAVDQKLSDAIAKAVYKVDPGLILFGLAESELVKAGERIGLQ
                     TANEVFADRTYQSDGTLTPRSQPDALIESDDAAVTQVIKMVKEGAVKSQQGHDVSLKA
                     DTVCIHGDGAHALTFAQKIRKQLKAAGIEVTAISEQRST*"
                     /label="pxpA CDS"
     gene            438590..439363
                     /gene="pxpA"
                     /locus_tag="BSU_04050"
                     /old_locus_tag="BSU04050"
                     /label="pxpA gene"
     CDS             439378..440592
                     /gene="pxpG"
                     /locus_tag="BSU_04060"
                     /old_locus_tag="BSU04060"
                     /function="16.1: Circulate"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 2b: Function from indirect experimental
                     evidences (e.g. phenotypes); PubMedId: 9334321, 15849754,
                     16850406, 28830929; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="5-oxoproline transporter"
                     /protein_id="NP_388288.3"
                     /db_xref="EnsemblGenomes-Gn:BSU04060"
                     /db_xref="EnsemblGenomes-Tr:CAB12214"
                     /db_xref="GOA:P42964"
                     /db_xref="InterPro:IPR001046"
                     /db_xref="SubtiList:BG11228"
                     /db_xref="UniProtKB/Swiss-Prot:P42964"
                     /translation="MEQQKKTAGKKAGSWSLLMGAAFLMATSAIGPGFLTQTATFTNT
                     LAASFGFVILISIILDIFAQTNVWRIIAVSGKRGQEIANMVLPGLGYFIAILVVLGGL
                     AFNIGNIGGAGLGLQVLFGITPETGALISAVIAILIFVIKEAGKAMDRFTQIAGFVMI
                     ILTVYVAATTAPPVGQAVANTFVPEHISIFAIVTLVGGTVGGYITFAGGHRLLDAGIK
                     GKESIPQVTKSSVVGILITSVMRIALFLAVLGVVSKGLHIDESNPAASVFKLAAGNVG
                     YKIFGLIMWSAAITSVIGAAYTSVSFFKTFSPKIEKNSRGIIIGFIVVSTLAFVTIGQ
                     PAKILVLVGSLNGLILPIALGTLLVAAYKKNIVGDYKHPLWLTSTGALVVIVMAVMGI
                     YTLCTQLPQLWS*"
                     /label="pxpG CDS"
     gene            439378..440592
                     /gene="pxpG"
                     /locus_tag="BSU_04060"
                     /old_locus_tag="BSU04060"
                     /label="pxpG gene"
     CDS             440616..441389
                     /gene="pxpI"
                     /locus_tag="BSU_04070"
                     /old_locus_tag="BSU04070"
                     /function="16.11: Scavenge (Catabolism)"
                     /function="16.6: Maintain"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 8186229, 9334321,
                     28830929; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative D-5-oxoproline epimerase"
                     /protein_id="NP_388289.3"
                     /db_xref="EnsemblGenomes-Gn:BSU04070"
                     /db_xref="EnsemblGenomes-Tr:CAB12215"
                     /db_xref="GOA:P42966"
                     /db_xref="InterPro:IPR009906"
                     /db_xref="InterPro:IPR016938"
                     /db_xref="SubtiList:BG11230"
                     /db_xref="UniProtKB/Swiss-Prot:P42966"
                     /translation="MAPKDVRALIREGKINGPTAGMSGGYAQANLVVLKKDLAFDFLL
                     FCQRNQKPCPVLDVTEAGSPVPSLAAPDADIRTDFPKYRIYRHGILTEEVSDITPYWE
                     DDFVGFLIGCSFSFEQALINNGIAVRHIDEGTNVSMYKTNIDCVPAGAFHGQMVVSMR
                     PVPERLAVRAAQVTSRFPAVHGGPIHIGNPGAIGIRDLGKPDFGDAVSIRDGEVPVFW
                     ACGVTPQAVAMNVKPEMVITHAPGHMLITDIRDESLAVL*"
                     /label="pxpI CDS"
     gene            440616..441389
                     /gene="pxpI"
                     /locus_tag="BSU_04070"
                     /old_locus_tag="BSU04070"
                     /label="pxpI gene"
     CDS             441434..442156
                     /gene="pxpB"
                     /locus_tag="BSU_04080"
                     /old_locus_tag="BSU04080"
                     /EC_number="3.5.2.9"
                     /function="16.8: Protect"
                     /function="16.6: Maintain"
                     /experiment="publication(s) with functional evidences,
                     PMID:9334321, 18823995, 19040634, 20524093, 21050859,
                     21245531, 22277658, 28830929"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 9334321, 18823995,
                     19040634, 20524093, 21050859, 21245531, 22277658,
                     28830929; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="L-5-oxoprolinase (ATP-dependent) subunit B"
                     /protein_id="NP_388290.2"
                     /db_xref="EnsemblGenomes-Gn:BSU04080"
                     /db_xref="EnsemblGenomes-Tr:CAB12216"
                     /db_xref="GOA:P60495"
                     /db_xref="InterPro:IPR003833"
                     /db_xref="InterPro:IPR010016"
                     /db_xref="InterPro:IPR024946"
                     /db_xref="InterPro:IPR029000"
                     /db_xref="PDB:2KWA"
                     /db_xref="PDB:2ZP2"
                     /db_xref="SubtiList:BG11231"
                     /db_xref="UniProtKB/Swiss-Prot:P60495"
                     /translation="MTVRYQIEQLGDSAMMIRFGEEINEQVNGIVHAAAAYIEEQPFP
                     GFIECIPAFTSLTVFYDMYEVYKHLPQGISSPFESVKRDVEERLAEIAEDYEVNRRIV
                     EIPVCYGGEFGPDLEEVAKINQLSPEEVIDIHTNGEYVVYMLGFAPGFPFLGGMSKRI
                     AAPRKSSPRPSIPAGSVGIAGLQTGVYPISTPGGWQLIGKTPLALFRPQENPPTLLRA
                     GDIVKFVRISEKDYHAYKEESN*"
                     /label="pxpB CDS"
     gene            441434..442156
                     /gene="pxpB"
                     /locus_tag="BSU_04080"
                     /old_locus_tag="BSU04080"
                     /label="pxpB gene"
     CDS             442159..443166
                     /gene="pxpC"
                     /locus_tag="BSU_04090"
                     /old_locus_tag="BSU04090"
                     /EC_number="3.5.2.9"
                     /function="16.6: Maintain"
                     /function="16.8: Protect"
                     /function="16.11: Scavenge (Catabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:9334321, 18823995, 19040634, 20524093, 21050859,
                     21245531, 22277658, 28830929"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 9334321, 18823995,
                     19040634, 20524093, 21050859, 21245531, 22277658,
                     28830929; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="L-5-oxoprolinase (ATP-dependent) subunit C"
                     /protein_id="YP_054571.2"
                     /db_xref="EnsemblGenomes-Gn:BSU04090"
                     /db_xref="EnsemblGenomes-Tr:CAE01447"
                     /db_xref="GOA:Q7WY77"
                     /db_xref="InterPro:IPR003778"
                     /db_xref="InterPro:IPR029000"
                     /db_xref="SubtiList:BG14193"
                     /db_xref="UniProtKB/Swiss-Prot:Q7WY77"
                     /translation="MKVLKPGLLTTVQDIGRTGYQKYGVLASGAMDTVSLRIANLLIG
                     NGENEAGLEITMMGPGPSFHFSKQTLIAVTGADFTLRINDEEAPLWKPVLIKENSTVS
                     FGPCKLGSRAYLAAAGGIEVPAVMESKSTYVRGSIGGLHGRALQKEDELNIGEMSALS
                     QTILSRLSSQLGKQGFAAPKWSVSRGRFLPLKKNPVIRVLEGKQFAFFTEESKTRFYE
                     EAFRVTPQSDRMGYRLKGEPLELKAPLEMVSEAVSFGTVQVPPDGNPIILLADRQTTG
                     GYPRIAHIISADLPIVSQIMPGEHVQFEPVSLQEAEALAVEREQHIKELKTRMKMEWL
                     T*"
                     /label="pxpC CDS"
     gene            442159..443166
                     /gene="pxpC"
                     /locus_tag="BSU_04090"
                     /old_locus_tag="BSU04090"
                     /label="pxpC gene"
     downshifts      442652
                     /Source="Nicolas_upshifts"
                     /id="D184"
                     /incds=1
                     /nref=6
                     /ntot=27
                     /MaxReadThrough="5.04721"
                     /MaxDrop="4.5277"
                     /score="-7.2426149"
                     /energy="-12.4"
                     /TU="U315"
                     /idTUdmin="U315"
                     /TUdmin="-1975"
                     /isTUend="FALSE"
                     /label="downshifts"
     promotor_no_box 442746..442846
                     /Source="Nicolas_upshift_promotors"
                     /id="U316"
                     /multdbtbs="-"
                     /comp="M21"
                     /sig="Sig-"
                     /pcomp="0.645354645354645"
                     /psig="0.020979020979021"
                     /xcortree=1726
                     /SigmaFactorBS="cattcgggtgctggaaggaaagcaatttgcctttttcacaga
                     agaatcaaaaacgcgtttttatgaagaagcatttcgtgtcacgccgcagtccgaccgt
                     a"
                     /listShort="kipR, lipC"
                     /GFF_Attribute="listLong"
                     /label="promotor_no_box"
     upshifts        442806
                     /Source="Nicolas_upshifts"
                     /id="U316"
                     /multdbtbs="-"
                     /comp="M21"
                     /sig="Sig-"
                     /pcomp="0.645354645354645"
                     /psig="0.020979020979021"
                     /xcortree=1726
                     /SigmaFactorBS="cattcgggtgctggaaggaaagcaatttgcctttttcacaga
                     agaatcaaaaacgcgtttttatgaagaagcatttcgtgtcacgccgcagtccgaccgt
                     a"
                     /listShort="kipR, lipC"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             443182..443934
                     /gene="pxpR"
                     /locus_tag="BSU_04100"
                     /old_locus_tag="BSU04100"
                     /function="16.3: Control"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 2a: Function from experimental evidences
                     in other organisms; PubMedId: 9334321; Product type r :
                     regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator of the pxp operon
                     (IclR family)"
                     /protein_id="NP_388291.2"
                     /db_xref="EnsemblGenomes-Gn:BSU04100"
                     /db_xref="EnsemblGenomes-Tr:CAB12217"
                     /db_xref="GOA:P42968"
                     /db_xref="InterPro:IPR005471"
                     /db_xref="InterPro:IPR014757"
                     /db_xref="InterPro:IPR029016"
                     /db_xref="InterPro:IPR036388"
                     /db_xref="InterPro:IPR036390"
                     /db_xref="SubtiList:BG11214"
                     /db_xref="UniProtKB/Swiss-Prot:P42968"
                     /translation="MQNKNKTVVKSMALLNLFLHKPSLTLSELVSLTGMPKTSVHRMV
                     SSLEEMGFLSRDASGAYSLGLVFLEFGQLVADRLDIRKIAKPVMEELCREVDEAVQLI
                     MRDGNEAIYVEKIEGTQTVRLYTAIGRRSPLYAGACARSILSFLPREEIEAYIKQTEL
                     ISIGSGTITDPEKLLQEIDASVQNGYTVSYSELENYTAAIGAPIFNHERQVAAGISIA
                     GFEARFTEDRLPYLTEKVKDAALQISRKIGYT*"
                     /label="pxpR CDS"
     gene            443182..443934
                     /gene="pxpR"
                     /locus_tag="BSU_04100"
                     /old_locus_tag="BSU04100"
                     /label="pxpR gene"
     promotor_-35    443932..443941
                     /Source="Nicolas_upshift_promotors"
                     /id="U317"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp=1
                     /psig=1
                     /xcortree=1275
                     /SigmaFactorBS="cagatttcaagaaaaataggatatacaTAAGTAGCCAatctt
                     ttctctgcTGCGTACATTAACGTATCGAcgttcaagagtggaggaaagaacatggtgc
                     t"
                     /listShort="lipC"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    443955..443974
                     /Source="Nicolas_upshift_promotors"
                     /id="U317"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp=1
                     /psig=1
                     /xcortree=1275
                     /SigmaFactorBS="cagatttcaagaaaaataggatatacaTAAGTAGCCAatctt
                     ttctctgcTGCGTACATTAACGTATCGAcgttcaagagtggaggaaagaacatggtgc
                     t"
                     /listShort="lipC"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        443965
                     /Source="Nicolas_upshifts"
                     /id="U317"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp=1
                     /psig=1
                     /xcortree=1275
                     /SigmaFactorBS="cagatttcaagaaaaataggatatacaTAAGTAGCCAatctt
                     ttctctgcTGCGTACATTAACGTATCGAcgttcaagagtggaggaaagaacatggtgc
                     t"
                     /listShort="lipC"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             443998..444639
                     /gene="lipC"
                     /locus_tag="BSU_04110"
                     /old_locus_tag="BSU04110"
                     /EC_number="3.1.1.-"
                     /function="16.3: Control"
                     /function="16.6: Maintain"
                     /experiment="publication(s) with functional evidences,
                     PMID:9334321, 17220230, 20057119"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 9334321, 17220230,
                     20057119; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="spore coat phospholipase B"
                     /protein_id="NP_388292.1"
                     /db_xref="EnsemblGenomes-Gn:BSU04110"
                     /db_xref="EnsemblGenomes-Tr:CAB12218"
                     /db_xref="GOA:P42969"
                     /db_xref="InterPro:IPR013830"
                     /db_xref="InterPro:IPR036514"
                     /db_xref="SubtiList:BG11232"
                     /db_xref="UniProtKB/Swiss-Prot:P42969"
                     /translation="MVLRYTALGDSLTTGRGSGLFSPGFVQRFGDMMEADLKTRTAIN
                     IFARSGLNTEEILGLLSYPYVQKCIRDADMITITGCGNDLIDSVLAYQTSKDETIFSR
                     VSAHCHENFEKMIAKVAEIKGENPSPYAIRVFNLYNPFPEIDIAGKWITSFNSHLETL
                     ASAPHVKIADAYSIFKGKEQEYLSFDGVHPNSKGYQAMAEAVHKLGYKELSVS*"
                     /label="lipC CDS"
     gene            443998..444639
                     /gene="lipC"
                     /locus_tag="BSU_04110"
                     /old_locus_tag="BSU04110"
                     /label="lipC gene"
     downshifts      444625
                     /Source="Nicolas_upshifts"
                     /id="D185"
                     /incds=0
                     /nref=106
                     /ntot=223
                     /MaxReadThrough="0.550230000000001"
                     /MaxDrop="6.63515"
                     /score="26.7371783"
                     /energy="-11.8"
                     /TU="NA"
                     /idTUdmin="U315"
                     /TUdmin="-2"
                     /isTUend="TRUE"
                     /label="downshifts"
     S_feature       complement(444637..445062)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_463070_463495_c"
                     /HighExp="S1, Sw, BC, S2, Lbtran, M0t90, LPhT, BI, M40t45,
                     C90"
                     /AntisenseName="yczI"
                     /AntisenseCor="-0.57558682544748696"
                     /AntisenseRegPval="-24.4"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.965"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S135"
     downshifts      complement(444682)
                     /Source="Nicolas_upshifts"
                     /id="D186"
                     /incds=0
                     /nref=171
                     /ntot=252
                     /MaxReadThrough="1.91715"
                     /MaxDrop="5.13764"
                     /score="6.4765859"
                     /energy="-11.8"
                     /TU="NA"
                     /idTUdmin="U319"
                     /TUdmin="-1"
                     /isTUend="TRUE"
                     /label="downshifts"
     promotor_-35    444715..444721
                     /Source="Nicolas_upshift_promotors"
                     /id="U318"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.361638361638362"
                     /psig="0.998001998001998"
                     /xcortree=2779
                     /SigmaFactorBS="gatcgaaatattaaaagaaacttaaaattctctgtcttcTGT
                     TCTAcagacaaacaaagTGCGCTAGAATAATGGAGGGcgtaggcaaatatagccataa
                     c"
                     /listShort="yczI, S136, pbpC, S137, ycsN"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    444735..444754
                     /Source="Nicolas_upshift_promotors"
                     /id="U318"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.361638361638362"
                     /psig="0.998001998001998"
                     /xcortree=2779
                     /SigmaFactorBS="gatcgaaatattaaaagaaacttaaaattctctgtcttcTGT
                     TCTAcagacaaacaaagTGCGCTAGAATAATGGAGGGcgtaggcaaatatagccataa
                     c"
                     /listShort="yczI, S136, pbpC, S137, ycsN"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        444736
                     /Source="Nicolas_upshifts"
                     /id="U318"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.361638361638362"
                     /psig="0.998001998001998"
                     /xcortree=2779
                     /SigmaFactorBS="gatcgaaatattaaaagaaacttaaaattctctgtcttcTGT
                     TCTAcagacaaacaaagTGCGCTAGAATAATGGAGGGcgtaggcaaatatagccataa
                     c"
                     /listShort="yczI, S136, pbpC, S137, ycsN"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             444812..445057
                     /gene="yczI"
                     /locus_tag="BSU_04120"
                     /old_locus_tag="BSU04120"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved protein of unknown function"
                     /protein_id="NP_388293.1"
                     /db_xref="EnsemblGenomes-Gn:BSU04120"
                     /db_xref="EnsemblGenomes-Tr:CAB12219"
                     /db_xref="GOA:P42970"
                     /db_xref="InterPro:IPR025018"
                     /db_xref="SubtiList:BG12783"
                     /db_xref="UniProtKB/Swiss-Prot:P42970"
                     /translation="MFRIFKMSFAVIIIILALIAFNYTEHTSVIQSVMLVFLGAVMFM
                     QGLEERKKENDGSGAFNIYTAVFVWSVSLIGFTLHII*"
                     /label="yczI CDS"
     gene            444812..445057
                     /gene="yczI"
                     /locus_tag="BSU_04120"
                     /old_locus_tag="BSU04120"
                     /label="yczI gene"
     S_feature       445058..445468
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_463491_463901"
                     /HighExp="T5.0H, T2.30H, T3.30H, T2.0H, T3.0H, T4.0H,
                     T1.30H, M9-stat, T-4.40H, T-3.40H"
                     /AntisenseName="yczJ"
                     /AntisenseCor="-0.20847541933848601"
                     /AntisenseRegPval="-3.2"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.998"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S136"
     CDS             complement(445063..445350)
                     /gene="yczJ"
                     /locus_tag="BSU_04130"
                     /old_locus_tag="BSU04130"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved protein of unknown function"
                     /protein_id="NP_388294.1"
                     /db_xref="EnsemblGenomes-Gn:BSU04130"
                     /db_xref="EnsemblGenomes-Tr:CAB12220"
                     /db_xref="InterPro:IPR007138"
                     /db_xref="InterPro:IPR011008"
                     /db_xref="SubtiList:BG12784"
                     /db_xref="UniProtKB/Swiss-Prot:O31484"
                     /translation="MVREAAMLHIKEGLEQEFEDAFRQAAPIISGMKGYITHSLSKCM
                     EETHKYLLLVEWETLEDHTEGFRGSSEYQEWKALLHRFYTPFPTVEHFQDV*"
                     /label="yczJ CDS"
     gene            complement(445063..445350)
                     /gene="yczJ"
                     /locus_tag="BSU_04130"
                     /old_locus_tag="BSU04130"
                     /label="yczJ gene"
     misc_feature    complement(445371..445390)
                     /Source="Nicolas_upshift_promotors"
                     /id="U319"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.542457542457542"
                     /psig="0.965034965034965"
                     /xcortree=1595
                     /SigmaFactorBS="aagatttttttgaaaatgaaggaaaagttcaccgattttgca
                     gaaatctcctatcgtTTGCTGTAGACTATTTGAAAagacagaaagaagggatagcatg
                     g"
                     /listShort="yczJ, S135"
                     /GFF_Attribute="listLong"
                     /label="promotor_single_box"
                     /note="Geneious type: promotor_single_box"
     upshifts        complement(445387)
                     /Source="Nicolas_upshifts"
                     /id="U319"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.542457542457542"
                     /psig="0.965034965034965"
                     /xcortree=1595
                     /SigmaFactorBS="aagatttttttgaaaatgaaggaaaagttcaccgattttgca
                     gaaatctcctatcgtTTGCTGTAGACTATTTGAAAagacagaaagaagggatagcatg
                     g"
                     /listShort="yczJ, S135"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    445444..445448
                     /Source="Nicolas_upshift_promotors"
                     /id="U320"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.855144855144855"
                     /psig="0.946053946053946"
                     /xcortree=2681
                     /SigmaFactorBS="aaatcggtgaacttttccttcattttcaaaaaaaTCTTGcac
                     gcaccaattcaatTAAGAGAAAATAACAAGTGGaaggcaggggaaagtcatgttaaaa
                     a"
                     /listShort="pbpC, S137, ycsN, S138, mtlR"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    445465..445484
                     /Source="Nicolas_upshift_promotors"
                     /id="U320"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.855144855144855"
                     /psig="0.946053946053946"
                     /xcortree=2681
                     /SigmaFactorBS="aaatcggtgaacttttccttcattttcaaaaaaaTCTTGcac
                     gcaccaattcaatTAAGAGAAAATAACAAGTGGaaggcaggggaaagtcatgttaaaa
                     a"
                     /listShort="pbpC, S137, ycsN, S138, mtlR"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        445470
                     /Source="Nicolas_upshifts"
                     /id="U320"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.855144855144855"
                     /psig="0.946053946053946"
                     /xcortree=2681
                     /SigmaFactorBS="aaatcggtgaacttttccttcattttcaaaaaaaTCTTGcac
                     gcaccaattcaatTAAGAGAAAATAACAAGTGGaaggcaggggaaagtcatgttaaaa
                     a"
                     /listShort="pbpC, S137, ycsN, S138, mtlR"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             445501..447507
                     /gene="pbpC"
                     /locus_tag="BSU_04140"
                     /old_locus_tag="BSU04140"
                     /function="16.13: Shape"
                     /function="16.2: Construct biomass (Anabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:8830698, 10648534"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 8830698, 10648534;
                     Product type lp: lipoprotein"
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin-binding lipoprotein 3;
                     transpeptidase"
                     /protein_id="NP_388295.1"
                     /db_xref="EnsemblGenomes-Gn:BSU04140"
                     /db_xref="EnsemblGenomes-Tr:CAB12221"
                     /db_xref="GOA:P42971"
                     /db_xref="InterPro:IPR001460"
                     /db_xref="InterPro:IPR005311"
                     /db_xref="InterPro:IPR007887"
                     /db_xref="InterPro:IPR012338"
                     /db_xref="InterPro:IPR032710"
                     /db_xref="InterPro:IPR036138"
                     /db_xref="SubtiList:BG11234"
                     /db_xref="UniProtKB/Swiss-Prot:P42971"
                     /translation="MLKKCILLVFLCVGLIGLIGCSKTDSPEDRMEAFVKQWNDQQFD
                     DMYQSLTKDVKKEISKKDFVNRYKAIYEQAGVKNLKVTAGEVDKDDQDNKTMKHIPYK
                     VSMNTNAGKVSFKNTAVLKLEKTDDEESWNIDWDPSFIFKQLADDKTVQIMSIEPKRG
                     QIYDKNGKGLAVNTDVPEIGIVPGELGDKKEKVIKELAKKLDLTEDDIKKKLDQGWVK
                     DDSFVPLKKVKPDQEKLVSEATSLQGVTRTNVSSRYYPYGEKTAHLTGYVRAITAEEL
                     KKKKEGTYSDTSNIGIAGLENVYEDKLRGTTGWKIYVPQTGEVIAEKKAKDGEDLHLT
                     IDIKTQMKLYDELKDDSGAAVALQPKTGETLALVSAPSYDPNGFIFGWSDKEWKKLNK
                     DKNNPFSAKFNKTYAPGSTIKPIAAAIGIKNGTLKADEKKTIKGKEWQKDSSWGGYSV
                     TRVSERLQQVDLENALITSDNIYFAQNALDMGADTFTKGLKTFGFSEDVPYEFPIQKS
                     SIANDKLDSDILLADTGYGQGQMQMSPLHLATAYTPFVDNGDLVKPTLIKKDSQTADV
                     WHKQVVTKEGAADITKGLKGVVEDERGSAYQPVVKGITVAGKTGTAELKTSKDDKDGT
                     ENGWFVGYDYENKDLLVAMMIQNVQDRGGSHYVVEKAKKQFQSN*"
                     /label="pbpC CDS"
     gene            445501..447507
                     /gene="pbpC"
                     /locus_tag="BSU_04140"
                     /old_locus_tag="BSU04140"
                     /label="pbpC gene"
     S_feature       447508..447608
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_465941_466041"
                     /HighExp="LBGstat, T5.0H, M0t45, T3.30H, S0, LBGtran,
                     Oxctl, T4.0H, C30, T3.0H"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA, SigA"
                     /TUshortPSig="0.946, 0.998"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S137"
     CDS             447609..448511
                     /gene="ycsN"
                     /locus_tag="BSU_04150"
                     /old_locus_tag="BSU04150"
                     /EC_number="1.1.1.-"
                     /function="16.11: Scavenge (Catabolism)"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 22720735; Product type
                     e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative oxidoreductase"
                     /protein_id="NP_388296.1"
                     /db_xref="EnsemblGenomes-Gn:BSU04150"
                     /db_xref="EnsemblGenomes-Tr:CAB12222"
                     /db_xref="GOA:P42972"
                     /db_xref="InterPro:IPR020471"
                     /db_xref="InterPro:IPR023210"
                     /db_xref="InterPro:IPR036812"
                     /db_xref="SubtiList:BG11235"
                     /db_xref="UniProtKB/Swiss-Prot:P42972"
                     /translation="MQRIQLAEDLQFSRVIHGLWRLNEWNYSDAELLSLIEWCIDHGI
                     TTFDHADIYGGYTCEKLFGNALALSPGLRENIELVTKCGIVLESPERPAHRSHHYNTS
                     KSHILASVEQSLMNLRTDYIDMLLIHRPDPLMDPEGVAEAFQALKCSGKVRYFGVSNF
                     KDHQYRMLESYLPEKLVTNQIELSAYELENMLDGTLNLCQEKRIPPMAWSPLAGGKVF
                     TENTDKDRRVRTALESVQGEIGAASLDEVMYAWLYTHPAGIMPIVGSGKRERISAAIN
                     ALSYKLDQDQWFRIFTAVQGYDIP*"
                     /label="ycsN CDS"
     gene            447609..448511
                     /gene="ycsN"
                     /locus_tag="BSU_04150"
                     /old_locus_tag="BSU04150"
                     /label="ycsN gene"
     downshifts      448491
                     /Source="Nicolas_upshifts"
                     /id="D187"
                     /incds=0
                     /nref=48
                     /ntot=206
                     /MaxReadThrough="3.20352"
                     /MaxDrop="4.57855"
                     /score="1.36962171"
                     /energy="-10.6"
                     /TU="U320"
                     /idTUdmin="U318"
                     /TUdmin="-8"
                     /isTUend="TRUE"
                     /label="downshifts"
     promotor_-35    448584..448591
                     /Source="Nicolas_upshift_promotors"
                     /id="U321"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.779220779220779"
                     /psig="0.995004995004995"
                     /xcortree=1547
                     /SigmaFactorBS="gtcacaccgcttagtgccaaattaccatttataagTGATTGA
                     TtctttcttgaaagCGTTTTATATTAAAAGGAAAcctctctatatcctctactgcatc
                     t"
                     /listShort="S138, mtlR"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    448605..448624
                     /Source="Nicolas_upshift_promotors"
                     /id="U321"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.779220779220779"
                     /psig="0.995004995004995"
                     /xcortree=1547
                     /SigmaFactorBS="gtcacaccgcttagtgccaaattaccatttataagTGATTGA
                     TtctttcttgaaagCGTTTTATATTAAAAGGAAAcctctctatatcctctactgcatc
                     t"
                     /listShort="S138, mtlR"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     S_feature       448609..448696
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_467042_467129"
                     /HighExp="S0, Gly, BC, Lbstat, S2, M9-stat, G135, dia5,
                     T0.30H, T2.30H"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA, SigA"
                     /TUshortPSig="0.995, 0.946"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S138"
     upshifts        448609
                     /Source="Nicolas_upshifts"
                     /id="U321"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.779220779220779"
                     /psig="0.995004995004995"
                     /xcortree=1547
                     /SigmaFactorBS="gtcacaccgcttagtgccaaattaccatttataagTGATTGA
                     TtctttcttgaaagCGTTTTATATTAAAAGGAAAcctctctatatcctctactgcatc
                     t"
                     /listShort="S138, mtlR"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             448697..450781
                     /gene="mtlR"
                     /locus_tag="BSU_04160"
                     /old_locus_tag="BSU04160"
                     /function="16.3: Control"
                     /experiment="publication(s) with functional evidences,
                     PMID:12897001, 23279188, 24196428, 26159071"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 12897001, 23279188,
                     24196428, 26159071; Product type r: regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator, PTS-dependent
                     activator"
                     /protein_id="NP_388297.1"
                     /db_xref="EnsemblGenomes-Gn:BSU04160"
                     /db_xref="EnsemblGenomes-Tr:CAB12223"
                     /db_xref="GOA:P96574"
                     /db_xref="InterPro:IPR002178"
                     /db_xref="InterPro:IPR003501"
                     /db_xref="InterPro:IPR007737"
                     /db_xref="InterPro:IPR011608"
                     /db_xref="InterPro:IPR013011"
                     /db_xref="InterPro:IPR013196"
                     /db_xref="InterPro:IPR016152"
                     /db_xref="InterPro:IPR036095"
                     /db_xref="InterPro:IPR036388"
                     /db_xref="InterPro:IPR036390"
                     /db_xref="InterPro:IPR036634"
                     /db_xref="SubtiList:BG12049"
                     /db_xref="UniProtKB/Swiss-Prot:P96574"
                     /translation="MYMTAREQKLLKHLLLQNRYITVTELAELMQVSTRTIHRELKSI
                     KPLMETVGLTLDKQPGKGLKAVGSPEGKQKLLTDLSYEQHEYSADERKLLILCSLLES
                     QEPVKLYTLAHDLQVTNATVSYDLDELEKWISPFGLTLIRKRGFGIQLIGPENAKRKI
                     VGNLIVNRLDIQMFLEAVELNIKGKTDSSEKMFGVVSKGELLKMERILFQLKEKIAFS
                     LSDSSYIALVVHLTYAIERIKLGETITMEQNELEELMNAKEYSSALEIAGELERAFGV
                     TIPEAEVGYITIHLRSANRKYKTEYKAQEIELETALQTKRLIAFISDKIRMDLTKNYS
                     LYEGLIAHLEPAVSRIKENIEIYNPMKEQIKRDYFLLYMAIEEGVEKYFPGMSFSDDE
                     IAFIVLHFGSALEIKKEEAKVKALVVCSSGIGSSKMLASRLKKELPEIESFDMSSLIE
                     LKGKDVQAYDMIVSTVPIPYENIDYIMVSPLLNEEDANQVKQYIKRKIPLILNKKRSS
                     KEEAQQADVPDMLEAAESIGRYMEVIQDVLRHFTLAQLKTNPDHSMLLLELFQQLKKD
                     GLIRDPEKAAVCLAEREKQGGLGIPGTNMALYHLKNDEIVLPFFKMFDLSTPYEVDGM
                     DGNTLRMTRILVMMAPGSLSAEGSEILSAISSAIIESGESMAGFQEEGGQELYQRLNR
                     IFFTWMKEKNIL*"
                     /label="mtlR CDS"
     gene            448697..450781
                     /gene="mtlR"
                     /locus_tag="BSU_04160"
                     /old_locus_tag="BSU04160"
                     /label="mtlR gene"
     downshifts      450768
                     /Source="Nicolas_upshifts"
                     /id="D188"
                     /incds=0
                     /nref=107
                     /ntot=220
                     /MaxReadThrough="1.91059"
                     /MaxDrop="5.63565"
                     /score="9.4904968"
                     /energy="-12.4"
                     /TU="NA"
                     /idTUdmin="U321"
                     /TUdmin="-19"
                     /isTUend="TRUE"
                     /label="downshifts"
     promotor_-35    450810..450816
                     /Source="Nicolas_upshift_promotors"
                     /id="U322"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp=1
                     /psig=1
                     /xcortree=739
                     /SigmaFactorBS="acctgcatggcacacgtcaaaaatttggCGTGTGTttttctg
                     tggatgGGGAACAAAATAAGAAAATgtgggactattttatcattcagtattggaataa
                     t"
                     /listShort="S139, ydaB"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    450830..450848
                     /Source="Nicolas_upshift_promotors"
                     /id="U322"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp=1
                     /psig=1
                     /xcortree=739
                     /SigmaFactorBS="acctgcatggcacacgtcaaaaatttggCGTGTGTttttctg
                     tggatgGGGAACAAAATAAGAAAATgtgggactattttatcattcagtattggaataa
                     t"
                     /listShort="S139, ydaB"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        450842
                     /Source="Nicolas_upshifts"
                     /id="U322"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp=1
                     /psig=1
                     /xcortree=739
                     /SigmaFactorBS="acctgcatggcacacgtcaaaaatttggCGTGTGTttttctg
                     tggatgGGGAACAAAATAAGAAAATgtgggactattttatcattcagtattggaataa
                     t"
                     /listShort="S139, ydaB"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     S_feature       450853..450934
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_469286_469367"
                     /HighExp="Etha, S5, S6, ferm, S8, nit, S7, BT, Salt, Sw"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigB"
                     /TUshortPSig=1
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S139"
     promotor_-35    450896..450903
                     /Source="Nicolas_upshift_promotors"
                     /id="U323"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.69030969030969"
                     /psig="0.992007992007992"
                     /xcortree=1439
                     /SigmaFactorBS="gaataattccaaaatgaaatAGTTTTACaagttatctttttT
                     GGGTTAAAATGGGTGAGGTaaggaagaaaatctaacaaattattgaagattcaagaga
                     a"
                     /listShort="ydaB"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    450917..450936
                     /Source="Nicolas_upshift_promotors"
                     /id="U323"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.69030969030969"
                     /psig="0.992007992007992"
                     /xcortree=1439
                     /SigmaFactorBS="gaataattccaaaatgaaatAGTTTTACaagttatctttttT
                     GGGTTAAAATGGGTGAGGTaaggaagaaaatctaacaaattattgaagattcaagaga
                     a"
                     /listShort="ydaB"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        450936
                     /Source="Nicolas_upshifts"
                     /id="U323"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.69030969030969"
                     /psig="0.992007992007992"
                     /xcortree=1439
                     /SigmaFactorBS="gaataattccaaaatgaaatAGTTTTACaagttatctttttT
                     GGGTTAAAATGGGTGAGGTaaggaagaaaatctaacaaattattgaagattcaagaga
                     a"
                     /listShort="ydaB"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             450993..452504
                     /gene="ydaB"
                     /locus_tag="BSU_04170"
                     /old_locus_tag="BSU04170"
                     /EC_number="6.2.1.-"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative acyl-CoA ligase"
                     /protein_id="NP_388298.2"
                     /db_xref="EnsemblGenomes-Gn:BSU04170"
                     /db_xref="EnsemblGenomes-Tr:CAB12224"
                     /db_xref="GOA:P96575"
                     /db_xref="InterPro:IPR000873"
                     /db_xref="InterPro:IPR020845"
                     /db_xref="InterPro:IPR025110"
                     /db_xref="SubtiList:BG12050"
                     /db_xref="UniProtKB/Swiss-Prot:P96575"
                     /translation="METLQHLILHDMPNSEEIEAVKSGDHTLTYKGYRKRINQLANAM
                     LQKGIQKGDRVALLCKNGHPASTVMFAALEIGAVVVPVSWQLKPYEMTGILKASEPKA
                     MFYGAEFKEILDEVLPELSSLCVTMETGTAYETSAEFEALFAGPDHLPETEMVSPDDT
                     ALLMFTSGTTGNPKRCMITHGGIYRYVKKSNSSIARMKGLRFLACHPIYHTSALICIM
                     LGTFAETTFVFTKDQDPVHMLKVIEEEKIQTVMALPVFYTYLLEAWEKHQTDLSSLVI
                     LMTGGTKVPSSLISRYLDIGIPLAHGYGSTEAWGISTWTPDMGMDKAASAGKPVAGVK
                     VKVEDPLTGEELPQGEIGEIVVHTPFLFKGYEDNPEATAKVLQNGWFRTGDSGYVDED
                     GFIFITGRYKDVIIYGGDNVYPDQVEEVIQQIPGILETAVVGIPDPLYGEKPKAFIVK
                     NGGQRITEEDVIAFCKERLSAYKIPEVEFVNELPKNNLGKVKKDVLRNQAVHS*"
                     /label="ydaB CDS"
     gene            450993..452504
                     /gene="ydaB"
                     /locus_tag="BSU_04170"
                     /old_locus_tag="BSU04170"
                     /label="ydaB gene"
     downshifts      452488
                     /Source="Nicolas_upshifts"
                     /id="D189"
                     /incds=0
                     /nref=3
                     /ntot=55
                     /MaxReadThrough="0.57376"
                     /MaxDrop="3.70168"
                     /score="9.4904968"
                     /energy="-12.4"
                     /TU="NA"
                     /idTUdmin="U323"
                     /TUdmin=73
                     /isTUend="FALSE"
                     /label="downshifts"
     CDS             complement(452524..453069)
                     /gene="ydaC"
                     /locus_tag="BSU_04180"
                     /old_locus_tag="BSU04180"
                     /EC_number="2.1.1.-"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative methyltransferase"
                     /protein_id="NP_388299.1"
                     /db_xref="EnsemblGenomes-Gn:BSU04180"
                     /db_xref="EnsemblGenomes-Tr:CAB12225"
                     /db_xref="GOA:P96576"
                     /db_xref="InterPro:IPR029063"
                     /db_xref="SubtiList:BG12051"
                     /db_xref="UniProtKB/Swiss-Prot:P96576"
                     /translation="MIAGYIMAAENQTLNQWTINQLGITRGDSILEVGFGPGYCMQQM
                     LKREKDVHLHGIDVSEAMLKLAARRVKPKGVRLIQGSIETFPLPASFYDKVISVNNYT
                     IWNDQTKGIKQIYRALKPGGKAAITMQPREADASPEKTKSFGRQMIADFKAAGFEDID
                     IQFKNIKPELSVCATAKKPAT*"
                     /label="ydaC CDS"
     gene            complement(452524..453069)
                     /gene="ydaC"
                     /locus_tag="BSU_04180"
                     /old_locus_tag="BSU04180"
                     /label="ydaC gene"
     downshifts      complement(452557)
                     /Source="Nicolas_upshifts"
                     /id="D190"
                     /incds=0
                     /nref=3
                     /ntot=11
                     /MaxReadThrough="1.44039"
                     /MaxDrop="3.73662"
                     /score="-9.35066962"
                     /energy="-11.5"
                     /TU="NA"
                     /idTUdmin="U324"
                     /TUdmin=0
                     /isTUend="TRUE"
                     /label="downshifts"
     promotor_-10    complement(453136..453154)
                     /Source="Nicolas_upshift_promotors"
                     /id="U324"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp=1
                     /psig=1
                     /xcortree=211
                     /SigmaFactorBS="tggcttggcaccttcgcattgctttatcagaaaaaTGTTTCA
                     catggaacgctgagAGGAAATTAACTCAAAAAGggggttggttgctgaatgattaaca
                     t"
                     /listShort="ydaC"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(453150)
                     /Source="Nicolas_upshifts"
                     /id="U324"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp=1
                     /psig=1
                     /xcortree=211
                     /SigmaFactorBS="tggcttggcaccttcgcattgctttatcagaaaaaTGTTTCA
                     catggaacgctgagAGGAAATTAACTCAAAAAGggggttggttgctgaatgattaaca
                     t"
                     /listShort="ydaC"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(453169..453175)
                     /Source="Nicolas_upshift_promotors"
                     /id="U324"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp=1
                     /psig=1
                     /xcortree=211
                     /SigmaFactorBS="tggcttggcaccttcgcattgctttatcagaaaaaTGTTTCA
                     catggaacgctgagAGGAAATTAACTCAAAAAGggggttggttgctgaatgattaaca
                     t"
                     /listShort="ydaC"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-35    453211..453217
                     /Source="Nicolas_upshift_promotors"
                     /id="U325"
                     /multdbtbs="SigB"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp=1
                     /psig=1
                     /xcortree=191
                     /SigmaFactorBS="tgaaacatttttctgataaagcaatgcgaaggtgccaagcca
                     TGTTTATccaaagagtgtgtgAGGTACACAACAAATAGACatgaaaacaaaggaggag
                     a"
                     /listShort="ydaD, ydaE, ydaF"
                     /listLong="ydaG, S140"
                     /label="promotor_-35"
     upshifts        453229
                     /Source="Nicolas_upshifts"
                     /id="U325"
                     /multdbtbs="SigB"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp=1
                     /psig=1
                     /xcortree=191
                     /SigmaFactorBS="tgaaacatttttctgataaagcaatgcgaaggtgccaagcca
                     TGTTTATccaaagagtgtgtgAGGTACACAACAAATAGACatgaaaacaaaggaggag
                     a"
                     /listShort="ydaD, ydaE, ydaF"
                     /listLong="ydaG, S140"
                     /label="upshifts"
     promotor_-10    453232..453250
                     /Source="Nicolas_upshift_promotors"
                     /id="U325"
                     /multdbtbs="SigB"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp=1
                     /psig=1
                     /xcortree=191
                     /SigmaFactorBS="tgaaacatttttctgataaagcaatgcgaaggtgccaagcca
                     TGTTTATccaaagagtgtgtgAGGTACACAACAAATAGACatgaaaacaaaggaggag
                     a"
                     /listShort="ydaD, ydaE, ydaF"
                     /listLong="ydaG, S140"
                     /label="promotor_-10"
     CDS             453276..454136
                     /gene="ydaD"
                     /locus_tag="BSU_04190"
                     /old_locus_tag="BSU04190"
                     /EC_number="1.1.1.-"
                     /function="16.11: Scavenge (Catabolism)"
                     /function="16.8: Protect"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 10220166, 11948145,
                     15805528, 21520290, 28197687; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative dehydrogenase"
                     /protein_id="NP_388300.1"
                     /db_xref="EnsemblGenomes-Gn:BSU04190"
                     /db_xref="EnsemblGenomes-Tr:CAB12226"
                     /db_xref="GOA:P80873"
                     /db_xref="InterPro:IPR002347"
                     /db_xref="InterPro:IPR020904"
                     /db_xref="InterPro:IPR036291"
                     /db_xref="SubtiList:BG12052"
                     /db_xref="UniProtKB/Swiss-Prot:P80873"
                     /translation="MANYPKELPAQTQSRQPGIESEMNPSPVYEYEDYKGADKLKGKV
                     ALITGGDSGIGRAVSVAYAKEGADIAIVYKDEHEDAEETKKRVEQEGVKCLLIAGDVG
                     EEEFCNEAVEKTVKELGGLDILVNNAGEQHPKESIKDITSEQLHRTFKTNFYSQFYLT
                     KKAIDYLKPGSAIINTTSINPYVGNPTLIDYTATKGAINAFTRTMAQALVKDGIRVNA
                     VAPGPIWTPLIPATFPEETVAQFGQDTPMGRPGQPVEHVGCYVLLASDESSYMTGQTL
                     HVNGGNFVTT*"
                     /label="ydaD CDS"
     gene            453276..454136
                     /gene="ydaD"
                     /locus_tag="BSU_04190"
                     /old_locus_tag="BSU04190"
                     /label="ydaD gene"
     CDS             454152..454655
                     /gene="lyxE"
                     /locus_tag="BSU_04200"
                     /old_locus_tag="BSU04200"
                     /EC_number="5.3.1.15"
                     /experiment="publication(s) with functional evidences,
                     PMID:10220166, 15805528, 21421786, 21520290"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 10220166, 15805528,
                     21421786, 21520290; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="D-lyxose ketol isomerase"
                     /protein_id="NP_388301.1"
                     /db_xref="EnsemblGenomes-Gn:BSU04200"
                     /db_xref="EnsemblGenomes-Tr:CAB12227"
                     /db_xref="GOA:P96578"
                     /db_xref="InterPro:IPR011051"
                     /db_xref="InterPro:IPR014710"
                     /db_xref="PDB:2Y0O"
                     /db_xref="SubtiList:BG12053"
                     /db_xref="UniProtKB/Swiss-Prot:P96578"
                     /translation="MGITKEEVNSYYQKAGIVLTDEEVDQIQLMDYGLGKERKVGLQL
                     FVYVNTDRYCSKELVLFPGQTCPEHRHPPVDGQEGKQETFRCRYGKVYLYVEGEKTPL
                     PKVLPPQEDREHYTVWHEIELEPGGQYTIPPNTKHWFQAGEEGAVVTEMSSTSTDKHD
                     IFTDPRI*"
                     /label="lyxE CDS"
     gene            454152..454655
                     /gene="lyxE"
                     /locus_tag="BSU_04200"
                     /old_locus_tag="BSU04200"
                     /label="lyxE gene"
     downshifts      454636
                     /Source="Nicolas_upshifts"
                     /id="D191"
                     /incds=0
                     /nref=16
                     /ntot=26
                     /MaxReadThrough="4.81615"
                     /MaxDrop="6.21035"
                     /score="29.8440619"
                     /energy="-15.5"
                     /TU="U325"
                     /idTUdmin="U325"
                     /TUdmin="-683"
                     /isTUend="FALSE"
                     /label="downshifts"
     promotor_-35    454684..454691
                     /Source="Nicolas_upshift_promotors"
                     /id="U326"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.95004995004995"
                     /psig=1
                     /xcortree=2929
                     /SigmaFactorBS="agaatataaggatgggcttaacagcccatcctttttgTATTG
                     AAAaaaacagaatcatCGCTATAATGGGTAAAAAAGgaaagagggcgaggcaatgttc
                     a"
                     /listShort="ydaF, ydaG, S140"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    454705..454724
                     /Source="Nicolas_upshift_promotors"
                     /id="U326"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.95004995004995"
                     /psig=1
                     /xcortree=2929
                     /SigmaFactorBS="agaatataaggatgggcttaacagcccatcctttttgTATTG
                     AAAaaaacagaatcatCGCTATAATGGGTAAAAAAGgaaagagggcgaggcaatgttc
                     a"
                     /listShort="ydaF, ydaG, S140"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        454707
                     /Source="Nicolas_upshifts"
                     /id="U326"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.95004995004995"
                     /psig=1
                     /xcortree=2929
                     /SigmaFactorBS="agaatataaggatgggcttaacagcccatcctttttgTATTG
                     AAAaaaacagaatcatCGCTATAATGGGTAAAAAAGgaaagagggcgaggcaatgttc
                     a"
                     /listShort="ydaF, ydaG, S140"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             454741..455292
                     /gene="ydaF"
                     /locus_tag="BSU_04210"
                     /old_locus_tag="BSU04210"
                     /EC_number="2.3.1.-"
                     /function="16.6: Maintain"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 15468321; Product type
                     e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative ribosomal protein N-acetyltransferase"
                     /protein_id="NP_388302.1"
                     /db_xref="EnsemblGenomes-Gn:BSU04210"
                     /db_xref="EnsemblGenomes-Tr:CAB12228"
                     /db_xref="GOA:P96579"
                     /db_xref="InterPro:IPR000182"
                     /db_xref="InterPro:IPR016181"
                     /db_xref="PDB:1NSL"
                     /db_xref="SubtiList:BG12054"
                     /db_xref="UniProtKB/Swiss-Prot:P96579"
                     /translation="MFTCKVNEHITIRLLEPKDAERLAELIIQNQQRLGKWLFFAENP
                     SSADTYRETIIPDWRRQYADLNGIEAGLLYDGSLCGMISLHNLDQVNRKAEIGYWIAK
                     EFEGKGIITAACRKLITYAFEELELNRVAICAAVGNEKSRAVPERIGFLEEGKARDGL
                     YVNGMHHDLVYYSLLKREWEGEK*"
                     /label="ydaF CDS"
     gene            454741..455292
                     /gene="ydaF"
                     /locus_tag="BSU_04210"
                     /old_locus_tag="BSU04210"
                     /label="ydaF gene"
     promotor_-35    455307..455313
                     /Source="Nicolas_upshift_promotors"
                     /id="U327"
                     /multdbtbs="SigB"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp="0.999000999001"
                     /psig="0.999000999001"
                     /xcortree=268
                     /SigmaFactorBS="ggcgaaaaataaagagcacactttctTGTTTAAatcttcccc
                     ggatgTGGAAAAGTAACAGCGGAGacgttaaaaaggagtgattcgagatgaatcagca
                     a"
                     /listShort="ydaG, S140"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    455328..455346
                     /Source="Nicolas_upshift_promotors"
                     /id="U327"
                     /multdbtbs="SigB"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp="0.999000999001"
                     /psig="0.999000999001"
                     /xcortree=268
                     /SigmaFactorBS="ggcgaaaaataaagagcacactttctTGTTTAAatcttcccc
                     ggatgTGGAAAAGTAACAGCGGAGacgttaaaaaggagtgattcgagatgaatcagca
                     a"
                     /listShort="ydaG, S140"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        455341
                     /Source="Nicolas_upshifts"
                     /id="U327"
                     /multdbtbs="SigB"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp="0.999000999001"
                     /psig="0.999000999001"
                     /xcortree=268
                     /SigmaFactorBS="ggcgaaaaataaagagcacactttctTGTTTAAatcttcccc
                     ggatgTGGAAAAGTAACAGCGGAGacgttaaaaaggagtgattcgagatgaatcagca
                     a"
                     /listShort="ydaG, S140"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             455370..455792
                     /gene="ydaG"
                     /locus_tag="BSU_04220"
                     /old_locus_tag="BSU04220"
                     /function="16.8: Protect"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 10220166; Product type
                     f: factor"
                     /codon_start=1
                     /transl_table=11
                     /product="putative general stress protein"
                     /protein_id="NP_388303.1"
                     /db_xref="EnsemblGenomes-Gn:BSU04220"
                     /db_xref="EnsemblGenomes-Tr:CAB12229"
                     /db_xref="GOA:P80238"
                     /db_xref="InterPro:IPR012349"
                     /db_xref="SubtiList:BG19017"
                     /db_xref="UniProtKB/Swiss-Prot:P80238"
                     /translation="MNQQDIKQKVLDVLDHHKVGSLATVQKGKPHSRYMTFFHDGLTI
                     YTPTSKETHKAEEIENNPNVHILLGYDCEGFGDAYVEVAGKAKINNSAELKDKIWSSK
                     LERWFDGKDDPNLVILEIEPEDIRLMNAGEKTPVSLEL*"
                     /label="ydaG CDS"
     gene            455370..455792
                     /gene="ydaG"
                     /locus_tag="BSU_04220"
                     /old_locus_tag="BSU04220"
                     /label="ydaG gene"
     promotor_-35    455797..455805
                     /Source="Nicolas_upshift_promotors"
                     /id="U328"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.753246753246753"
                     /psig="0.993006993006993"
                     /xcortree=273
                     /SigmaFactorBS="gtctcactcgaactataaaaaaTTTGTGTTTtcaggggcgaT
                     ATGTTATTATGAATAGCTAgtaagaaaaataagcaaataaaaaagaaagtaaacttct
                     t"
                     /listShort="S140"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    455816..455835
                     /Source="Nicolas_upshift_promotors"
                     /id="U328"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.753246753246753"
                     /psig="0.993006993006993"
                     /xcortree=273
                     /SigmaFactorBS="gtctcactcgaactataaaaaaTTTGTGTTTtcaggggcgaT
                     ATGTTATTATGAATAGCTAgtaagaaaaataagcaaataaaaaagaaagtaaacttct
                     t"
                     /listShort="S140"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     S_feature       455835..456201
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_474268_474634"
                     /HighExp="Etha, Salt, Cold, Sw, B60, Gly, M9-stat, LPhT,
                     B36, G135"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA, SigB, SigA"
                     /TUshortPSig="0.993, 0.999, 1"
                     /TUlongSig="SigB"
                     /TUlongPSig=1
                     /label="S140"
     upshifts        455835
                     /Source="Nicolas_upshifts"
                     /id="U328"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.753246753246753"
                     /psig="0.993006993006993"
                     /xcortree=273
                     /SigmaFactorBS="gtctcactcgaactataaaaaaTTTGTGTTTtcaggggcgaT
                     ATGTTATTATGAATAGCTAgtaagaaaaataagcaaataaaaaagaaagtaaacttct
                     t"
                     /listShort="S140"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_no_box complement(455861..455961)
                     /Source="Nicolas_upshift_promotors"
                     /id="U329"
                     /multdbtbs="-"
                     /comp="M13"
                     /sig="Sig-"
                     /pcomp="0.725274725274725"
                     /psig="0.010989010989011"
                     /xcortree=121
                     /SigmaFactorBS="aggggcgatttgttatgaaggaaaagaataagggcagctggt
                     tatgctgcttgggaagcggtaagcttctctctcaaaacagaaaaaagaagtttacttt
                     c"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_no_box"
     misc_RNA        complement(455896..456164)
                     /gene="bsrC"
                     /locus_tag="BSU_misc_RNA_64"
                     /product="small regulatory RNA"
                     /experiment="publication(s) with functional evidences,
                     PMID:18948176, 23457461"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 18948176, 23457461;
                     Product type n: RNA"
                     /label="bsrC RNA"
     gene            complement(455896..456164)
                     /gene="bsrC"
                     /locus_tag="BSU_misc_RNA_64"
                     /label="bsrC gene"
     upshifts        complement(455901)
                     /Source="Nicolas_upshifts"
                     /id="U329"
                     /multdbtbs="-"
                     /comp="M13"
                     /sig="Sig-"
                     /pcomp="0.725274725274725"
                     /psig="0.010989010989011"
                     /xcortree=121
                     /SigmaFactorBS="aggggcgatttgttatgaaggaaaagaataagggcagctggt
                     tatgctgcttgggaagcggtaagcttctctctcaaaacagaaaaaagaagtttacttt
                     c"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     downshifts      456158
                     /Source="Nicolas_upshifts"
                     /id="D192"
                     /incds=0
                     /nref=124
                     /ntot=275
                     /MaxReadThrough="2.67264"
                     /MaxDrop="7.35087"
                     /score="29.9942993"
                     /energy="-12"
                     /TU="NA"
                     /idTUdmin="U326"
                     /TUdmin=3
                     /isTUend="TRUE"
                     /label="downshifts"
     promotor_-35    456238..456247
                     /Source="Nicolas_upshift_promotors"
                     /id="U330"
                     /multdbtbs="-"
                     /comp="M9"
                     /sig="SigWXY"
                     /pcomp=1
                     /psig=1
                     /xcortree=1651
                     /SigmaFactorBS="gacggtttttttattgcaaaaaacacatcgtacTGAAACCTC
                     CttgtcttctttcCAGTCTTATCTCTAGGatgaaattggaggaagaataacgtgcatg
                     t"
                     /listShort="ydaH, lrpC, topB"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    456260..456275
                     /Source="Nicolas_upshift_promotors"
                     /id="U330"
                     /multdbtbs="-"
                     /comp="M9"
                     /sig="SigWXY"
                     /pcomp=1
                     /psig=1
                     /xcortree=1651
                     /SigmaFactorBS="gacggtttttttattgcaaaaaacacatcgtacTGAAACCTC
                     CttgtcttctttcCAGTCTTATCTCTAGGatgaaattggaggaagaataacgtgcatg
                     t"
                     /listShort="ydaH, lrpC, topB"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        456265
                     /Source="Nicolas_upshifts"
                     /id="U330"
                     /multdbtbs="-"
                     /comp="M9"
                     /sig="SigWXY"
                     /pcomp=1
                     /psig=1
                     /xcortree=1651
                     /SigmaFactorBS="gacggtttttttattgcaaaaaacacatcgtacTGAAACCTC
                     CttgtcttctttcCAGTCTTATCTCTAGGatgaaattggaggaagaataacgtgcatg
                     t"
                     /listShort="ydaH, lrpC, topB"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             456298..457107
                     /gene="amj"
                     /locus_tag="BSU_04230"
                     /old_locus_tag="BSU04230"
                     /experiment="publication(s) with functional evidences,
                     PMID:15849754, 16850406, 25918422, 27537185"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 15849754, 16850406,
                     25918422, 27537185; Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="lipid II flippase"
                     /protein_id="NP_388304.1"
                     /db_xref="EnsemblGenomes-Gn:BSU04230"
                     /db_xref="EnsemblGenomes-Tr:CAB12230"
                     /db_xref="GOA:P96581"
                     /db_xref="InterPro:IPR021260"
                     /db_xref="SubtiList:BG12055"
                     /db_xref="UniProtKB/Swiss-Prot:P96581"
                     /translation="MHVITTQVLFIFCFLLLIHSIETLAYATRLSGARVGFIASALSL
                     FNVMVIVSRMSNMVQQPFTGHLIDDAGKNALAIVGEQFRFLIFGSTVGTILGIILLPS
                     FVALFSRAIIHLAGGGGSVFQVFRKGFSKQGFKNALSYLRLPSISYVKGFHMRLIPKR
                     LFVINMLITSIYTIGVLSALYAGLLAPERSTTAVMASGLINGIATMLLAIFVDPKVSV
                     LADDVAKGKRSYIYLKWTSVTMVTSRVAGTLLAQLMFIPGAYYIAWLTKWF*"
                     /label="amj CDS"
     gene            456298..457107
                     /gene="amj"
                     /locus_tag="BSU_04230"
                     /old_locus_tag="BSU04230"
                     /label="amj gene"
     downshifts      457088
                     /Source="Nicolas_upshifts"
                     /id="D193"
                     /incds=0
                     /nref=5
                     /ntot=103
                     /MaxReadThrough="2.92236"
                     /MaxDrop="3.54247"
                     /score="15.7032536"
                     /energy="-14.9"
                     /TU="U330"
                     /idTUdmin="U327"
                     /TUdmin=911
                     /isTUend="FALSE"
                     /label="downshifts"
     CDS             complement(457151..457441)
                     /gene="ydzA"
                     /locus_tag="BSU_04240"
                     /old_locus_tag="BSU04240"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved protein of unknown function"
                     /protein_id="NP_388305.1"
                     /db_xref="EnsemblGenomes-Gn:BSU04240"
                     /db_xref="EnsemblGenomes-Tr:CAB12231"
                     /db_xref="GOA:O31485"
                     /db_xref="InterPro:IPR023845"
                     /db_xref="SubtiList:BG12807"
                     /db_xref="UniProtKB/Swiss-Prot:O31485"
                     /translation="MLHTPIGRLRTMGFIEGMSLLILLFIAMPLKYWAGLPLAVTIVG
                     SVHGGLFILYLLVLAYATFSVKWPLKWSAAGFIAAFVPFGNFLYDRGLRNYK*"
                     /label="ydzA CDS"
     gene            complement(457151..457441)
                     /gene="ydzA"
                     /locus_tag="BSU_04240"
                     /old_locus_tag="BSU04240"
                     /label="ydzA gene"
     downshifts      complement(457155)
                     /Source="Nicolas_upshifts"
                     /id="D194"
                     /incds=0
                     /nref=235
                     /ntot=260
                     /MaxReadThrough="1.23465"
                     /MaxDrop="7.74945"
                     /score="10.1798531"
                     /energy="-14.9"
                     /TU="NA"
                     /idTUdmin="U332"
                     /TUdmin=0
                     /isTUend="TRUE"
                     /label="downshifts"
     misc_feature    complement(457469..457488)
                     /Source="Nicolas_upshift_promotors"
                     /id="U332"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.653346653346653"
                     /psig="0.967032967032967"
                     /xcortree=1622
                     /SigmaFactorBS="catgtaaaaatgaatgttttccgaacattttttgaaagctgt
                     catatgcccccccggATTGTTTATAGTATAAAATGaaaacgtgtccacaaggagggcg
                     a"
                     /listShort="ydzA"
                     /GFF_Attribute="listLong"
                     /label="promotor_single_box"
                     /note="Geneious type: promotor_single_box"
     misc_feature    457469..457487
                     /Source="Nicolas_upshift_promotors"
                     /id="U331"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.343656343656344"
                     /psig="0.691308691308691"
                     /xcortree=306
                     /SigmaFactorBS="aagtcttccgatcggcgtgtgcagcataaatcgccctccttg
                     tggacacgttttCATTTTATACTATAAACAAtccgggggggcatatgacagctttcaa
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_single_box"
                     /note="Geneious type: promotor_single_box"
     upshifts        457475
                     /Source="Nicolas_upshifts"
                     /id="U331"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.343656343656344"
                     /psig="0.691308691308691"
                     /xcortree=306
                     /SigmaFactorBS="aagtcttccgatcggcgtgtgcagcataaatcgccctccttg
                     tggacacgttttCATTTTATACTATAAACAAtccgggggggcatatgacagctttcaa
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     upshifts        complement(457485)
                     /Source="Nicolas_upshifts"
                     /id="U332"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.653346653346653"
                     /psig="0.967032967032967"
                     /xcortree=1622
                     /SigmaFactorBS="catgtaaaaatgaatgttttccgaacattttttgaaagctgt
                     catatgcccccccggATTGTTTATAGTATAAAATGaaaacgtgtccacaaggagggcg
                     a"
                     /listShort="ydzA"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    457563..457570
                     /Source="Nicolas_upshift_promotors"
                     /id="U333"
                     /multdbtbs="SigA"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.765234765234765"
                     /psig="0.999000999001"
                     /xcortree=2269
                     /SigmaFactorBS="aacattcatttttacatgccttttctagggaactgTACTTGT
                     CatttacaaaaataCCCGAGATAATGTGTACAAAatcaaaaaagaaggatgttgaaat
                     g"
                     /listShort="lrpC, topB"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    457584..457603
                     /Source="Nicolas_upshift_promotors"
                     /id="U333"
                     /multdbtbs="SigA"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.765234765234765"
                     /psig="0.999000999001"
                     /xcortree=2269
                     /SigmaFactorBS="aacattcatttttacatgccttttctagggaactgTACTTGT
                     CatttacaaaaataCCCGAGATAATGTGTACAAAatcaaaaaagaaggatgttgaaat
                     g"
                     /listShort="lrpC, topB"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        457588
                     /Source="Nicolas_upshifts"
                     /id="U333"
                     /multdbtbs="SigA"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.765234765234765"
                     /psig="0.999000999001"
                     /xcortree=2269
                     /SigmaFactorBS="aacattcatttttacatgccttttctagggaactgTACTTGT
                     CatttacaaaaataCCCGAGATAATGTGTACAAAatcaaaaaagaaggatgttgaaat
                     g"
                     /listShort="lrpC, topB"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             457626..458060
                     /gene="lrpC"
                     /locus_tag="BSU_04250"
                     /old_locus_tag="BSU04250"
                     /function="16.3: Control"
                     /experiment="publication(s) with functional evidences,
                     PMID:9341680, 10606655, 10913073, 12458218, 16407330,
                     16528101"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 9341680, 10606655,
                     10913073, 12458218, 16407330, 16528101; Product type r :
                     regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator (Lrp/AsnC family)"
                     /protein_id="NP_388306.1"
                     /db_xref="EnsemblGenomes-Gn:BSU04250"
                     /db_xref="EnsemblGenomes-Tr:CAB12232"
                     /db_xref="GOA:P96582"
                     /db_xref="InterPro:IPR000485"
                     /db_xref="InterPro:IPR011008"
                     /db_xref="InterPro:IPR019887"
                     /db_xref="InterPro:IPR019888"
                     /db_xref="InterPro:IPR036388"
                     /db_xref="InterPro:IPR036390"
                     /db_xref="PDB:2CFX"
                     /db_xref="SubtiList:BG12056"
                     /db_xref="UniProtKB/Swiss-Prot:P96582"
                     /translation="MKLDQIDLNIIEELKKDSRLSMRELGRKIKLSPPSVTERVRQLE
                     SFGIIKQYTLEVDQKKLGLPVSCIVEATVKNADYERFKSYIQTLPNIEFCYRIAGAAC
                     YMLKINAESLEAVEDFINKTSPYAQTVTHVIFSEIDTKNGRG*"
                     /label="lrpC CDS"
     gene            457626..458060
                     /gene="lrpC"
                     /locus_tag="BSU_04250"
                     /old_locus_tag="BSU04250"
                     /label="lrpC gene"
     promotor_-35    458057..458060
                     /Source="Nicolas_upshift_promotors"
                     /id="U334"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.685314685314685"
                     /psig="0.988011988011988"
                     /xcortree=2491
                     /SigmaFactorBS="cgtcactcacgtcattttctcagaaattgacacgaaaaacgg
                     gcgcggTTAGagagtgccgcgcgaagTCTGTTATAATAACAGGATGagcgtgaaagaa
                     a"
                     /listShort="topB, S141, ydaJ"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     upshifts        458069
                     /Source="Nicolas_upshifts"
                     /id="U334"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.685314685314685"
                     /psig="0.988011988011988"
                     /xcortree=2491
                     /SigmaFactorBS="cgtcactcacgtcattttctcagaaattgacacgaaaaacgg
                     gcgcggTTAGagagtgccgcgcgaagTCTGTTATAATAACAGGATGagcgtgaaagaa
                     a"
                     /listShort="topB, S141, ydaJ"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-10    458077..458096
                     /Source="Nicolas_upshift_promotors"
                     /id="U334"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.685314685314685"
                     /psig="0.988011988011988"
                     /xcortree=2491
                     /SigmaFactorBS="cgtcactcacgtcattttctcagaaattgacacgaaaaacgg
                     gcgcggTTAGagagtgccgcgcgaagTCTGTTATAATAACAGGATGagcgtgaaagaa
                     a"
                     /listShort="topB, S141, ydaJ"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     CDS             458125..460308
                     /gene="topB"
                     /locus_tag="BSU_04260"
                     /old_locus_tag="BSU04260"
                     /EC_number="5.99.1.2"
                     /function="16.2: Construct biomass (Anabolism)"
                     /function="16.6: Maintain"
                     /function="16.9: Replicate"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 1c: Function from experimental evidences
                     in the studied genus; PubMedId: 16192570, 16556226;
                     Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA topoisomerase III"
                     /protein_id="NP_388307.1"
                     /db_xref="EnsemblGenomes-Gn:BSU04260"
                     /db_xref="EnsemblGenomes-Tr:CAB12233"
                     /db_xref="GOA:P96583"
                     /db_xref="InterPro:IPR000380"
                     /db_xref="InterPro:IPR003601"
                     /db_xref="InterPro:IPR003602"
                     /db_xref="InterPro:IPR005738"
                     /db_xref="InterPro:IPR006171"
                     /db_xref="InterPro:IPR013497"
                     /db_xref="InterPro:IPR013825"
                     /db_xref="InterPro:IPR023405"
                     /db_xref="InterPro:IPR023406"
                     /db_xref="InterPro:IPR034144"
                     /db_xref="SubtiList:BG11979"
                     /db_xref="UniProtKB/Swiss-Prot:P96583"
                     /translation="MSKTVVLAEKPSVGRDLARVLKCHKKGNGYLEGDQYIVTWALGH
                     LVTLADPEGYGKEFQSWRLEDLPIIPEPLKLVVIKKTGKQFNAVKSQLTRKDVNQIVI
                     ATDAGREGELVARWIIEKANVRKPIKRLWISSVTDKAIKEGFQKLRSGKEYENLYHSA
                     VARAEADWIVGINATRALTTKFNAQLSCGRVQTPTLAMIAKREADIQAFTPVPYYGIR
                     AAVDGMTLTWQDKKSKQTRTFNQDVTSRLLKNLQGKQAVVAELKKTAKKSFAPALYDL
                     TELQRDAHKRFGFSAKETLSVLQKLYEQHKLVTYPRTDSRFLSSDIVPTLKDRLEGME
                     VKPYAQYVSQIKKRGIKSHKGYVNDAKVSDHHAIIPTEEPLVLSSLSDKERKLYDLIA
                     KRFLAVLMPAFEYEETKVIAEIGGETFTAKGKTVQSQGWKAVYDMAEEDDEQEDDRDQ
                     TLPALQKGDTLAVRTLTETSGQTKPPARFNEGTLLSAMENPSAFMQGEEKGLVKTLGE
                     TGGLGTVATRADIIEKLFNSFLIEKKGQDIFITSKGKQLLQLVPEDLKSPALTAEWEQ
                     KLSAIAAGKLKSAVFIKDMKAYAHQTVKEIKNSSQTFRHDNITGTACPECGKMMLKVN
                     GKRGTMLVCQDRECGSRKTIARKTNARCPNCHKRMELRGQGEGQTFACVCGHREKLSV
                     FEKRKNKDKARATKRDVSSYMKKQNKDEPINNALAEQLKKLGLDK*"
                     /label="topB CDS"
     gene            458125..460308
                     /gene="topB"
                     /locus_tag="BSU_04260"
                     /old_locus_tag="BSU04260"
                     /label="topB gene"
     downshifts      460291
                     /Source="Nicolas_upshifts"
                     /id="D195"
                     /incds=0
                     /nref=133
                     /ntot=245
                     /MaxReadThrough="3.22367"
                     /MaxDrop="6.18597"
                     /score="23.5229393"
                     /energy="-10.4"
                     /TU="U334"
                     /idTUdmin="U333"
                     /TUdmin=0
                     /isTUend="TRUE"
                     /label="downshifts"
     promotor_-35    460357..460363
                     /Source="Nicolas_upshift_promotors"
                     /id="U335"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp=1
                     /psig=1
                     /xcortree=179
                     /SigmaFactorBS="tgtgcctatcgcacaggttttttattggacttaggtccTGTT
                     TTCttaatgttcaaaaaGGGAAAAAAAAGCTAGCAAtctgcattttttttcttttata
                     g"
                     /listShort="S141, ydaJ, ydaK"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    460378..460396
                     /Source="Nicolas_upshift_promotors"
                     /id="U335"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp=1
                     /psig=1
                     /xcortree=179
                     /SigmaFactorBS="tgtgcctatcgcacaggttttttattggacttaggtccTGTT
                     TTCttaatgttcaaaaaGGGAAAAAAAAGCTAGCAAtctgcattttttttcttttata
                     g"
                     /listShort="S141, ydaJ, ydaK"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     S_feature       460379..460510
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_478812_478943"
                     /HighExp="Etha, Salt, Heat, Cold, H2O2, G180, LPhT, Oxctl,
                     Paraq, G135"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigB, SigA"
                     /TUshortPSig="1, 0.988"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S141"
     upshifts        460379
                     /Source="Nicolas_upshifts"
                     /id="U335"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp=1
                     /psig=1
                     /xcortree=179
                     /SigmaFactorBS="tgtgcctatcgcacaggttttttattggacttaggtccTGTT
                     TTCttaatgttcaaaaaGGGAAAAAAAAGCTAGCAAtctgcattttttttcttttata
                     g"
                     /listShort="S141, ydaJ, ydaK"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             460511..461599
                     /gene="epsJ"
                     /locus_tag="BSU_04270"
                     /old_locus_tag="BSU04270"
                     /function="16.13: Shape"
                     /function="16.5: Explore"
                     /experiment="publication(s) with functional evidences,
                     PMID:15661000, 26078454, 27897378"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 15661000, 26078454,
                     27897378; Product type lp: lipoprotein"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyl hydrolase lipoprotein"
                     /protein_id="NP_388308.1"
                     /db_xref="EnsemblGenomes-Gn:BSU04270"
                     /db_xref="EnsemblGenomes-Tr:CAB12234"
                     /db_xref="GOA:O31486"
                     /db_xref="InterPro:IPR008928"
                     /db_xref="SubtiList:BG12057"
                     /db_xref="UniProtKB/Swiss-Prot:O31486"
                     /translation="MRHVLIAVILFFLSIGLSAGCAEAGNKTQNQSATEVNASPLQPA
                     EYFIYHNLMNDKGLIKTDFSDQPSYLSESLGLWMEFLLSKNDAPHFQDQYQHLTDSFL
                     MSNHLVTWKIQNGQASGTNALIDDMRIMLSLDQAAAKWGRSDYAQTARDIGTSLKTYN
                     MNNGFFTDFYDSQAASKDVTLSYVMPDALAVLKKNGIIDEETEQRNANVLYSAPLKNG
                     FLPKTYSSETKEYTYDSEINLIDQLYAAWHLPEGDEKASVLADWIKQEFQKNGKLYGR
                     YSAYTKEPAVQYESPSVYALAVLFLTKQHENSSVIKAIYDRMNDFEIHDPVKSYYGGY
                     MSGTQTHSFDNLLPLLAERKLFNENIIQ*"
                     /label="epsJ CDS"
     gene            460511..461599
                     /gene="epsJ"
                     /locus_tag="BSU_04270"
                     /old_locus_tag="BSU04270"
                     /label="epsJ gene"
     CDS             461580..462431
                     /gene="epsK"
                     /locus_tag="BSU_04280"
                     /old_locus_tag="BSU04280"
                     /function="16.3: Control"
                     /experiment="publication(s) with functional evidences,
                     PMID:23893111, 27897378"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 23893111, 27897378;
                     Product type rc: receptor"
                     /codon_start=1
                     /transl_table=11
                     /product="cyclic-di-GMP receptor"
                     /protein_id="NP_388309.1"
                     /db_xref="EnsemblGenomes-Gn:BSU04280"
                     /db_xref="EnsemblGenomes-Tr:CAB12235"
                     /db_xref="GOA:P96585"
                     /db_xref="InterPro:IPR000160"
                     /db_xref="InterPro:IPR029787"
                     /db_xref="SubtiList:BG12058"
                     /db_xref="UniProtKB/Swiss-Prot:P96585"
                     /translation="MKISFSESQKLFAYFSGLIAALSLFIYYVSAQQSEGALILCITF
                     GVIAAGIWFGPIYALAVTLIVLFVLGTLMMFFQTGQTSLFPAEEGLRMLVVWGIALLL
                     FSFISGRIHDITAELRRSMTRLQSEIKSYVAVDRVTGFDNKQRMKLELSEEIKRAERY
                     GNSFVFLLLHMHYFKEFKSLYGEKETDRLFQYVGQQIRTSVRETDKKFRPSDERIGIV
                     LTHTPAEHMPAVLTKLKKQLDTYQLENGKYVSLTFHVCYLPYRNDIQTADQFLEELEN
                     EMMMNEL*"
                     /label="epsK CDS"
     gene            461580..462431
                     /gene="epsK"
                     /locus_tag="BSU_04280"
                     /old_locus_tag="BSU04280"
                     /label="epsK gene"
     CDS             462442..464151
                     /gene="ydaL"
                     /locus_tag="BSU_04290"
                     /old_locus_tag="BSU04290"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms; PubMedId: 27897378; Product type ph
                     :phenotype"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved protein of unknown function"
                     /protein_id="NP_388310.1"
                     /db_xref="EnsemblGenomes-Gn:BSU04290"
                     /db_xref="EnsemblGenomes-Tr:CAB12236"
                     /db_xref="GOA:O31487"
                     /db_xref="InterPro:IPR018763"
                     /db_xref="SubtiList:BG12059"
                     /db_xref="UniProtKB/Swiss-Prot:O31487"
                     /translation="MLCVMMLLFSAIASFPVSAQAKDQDAGILIIYSTLDGKESSQVK
                     MLDLLAGHFTSHVTVKKDSDVEASDFKGKDHVIYYGQTKRKLSQKLLSLISGVKKPVV
                     AIGYNAGQISQFSGLSLARKENVFQVHSRSEKADVSLESGLNVLSVSGLKGTALYTFK
                     ADEGTTHSFIWKTKKGNVYIGLTNLLNDNLIVAKQLREAFGEKAGTTLLYLRLEDISP
                     MSDEKLLLQAGTYLHKRHIPFILAVIPVYLNPETGDKVYLSNQPKMVKVLKKLQSMGG
                     SIIVHGYTHAYRYSETGEGFEFWDAKADQPITSGNAEDPPSILEKEQDFPNEQAYHSY
                     LEPFREKEETYTKQKLTRAIEDLTSSGLYPLAFEAPHYTMSEYGYQIASQYFTSIFGQ
                     VQLSSTTWKTSGAPPFVTAPSMLHGMTLYPETIGFVDTSKQNPLGEMEEHISQMIDFE
                     GGVAGGFYHPYLGMKYLPELVDQMERIPDSEWLDLKKTKQTVKTDKVEIHTSGDGTIQ
                     VKNGVSPIYEFFDHHRQTPLEKALWILSAVVLLFVIMFVSYTFYLRATLKKRIFKERR
                     SLG*"
                     /label="ydaL CDS"
     gene            462442..464151
                     /gene="ydaL"
                     /locus_tag="BSU_04290"
                     /old_locus_tag="BSU04290"
                     /label="ydaL gene"
     CDS             464144..465406
                     /gene="ydaM"
                     /locus_tag="BSU_04300"
                     /old_locus_tag="BSU04300"
                     /EC_number="2.4.-.-"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 27897378, 28296273;
                     Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative glycosyltransferase associated to
                     biofilm formation"
                     /protein_id="NP_388311.1"
                     /db_xref="EnsemblGenomes-Gn:BSU04300"
                     /db_xref="EnsemblGenomes-Tr:CAB12237"
                     /db_xref="GOA:P96587"
                     /db_xref="InterPro:IPR029044"
                     /db_xref="SubtiList:BG12060"
                     /db_xref="UniProtKB/Swiss-Prot:P96587"
                     /translation="MGNTLFFISLSLIWVMLLYHMFLMQGGFRHYMTFERNIPKWREN
                     MKELPKVSVLIPAHNEEVVIRQTLKAMVNLYYPKDRLEIIVVNDNSSDRTGDIVNEFS
                     EKYDFIKMVITKPPNAGKGKSSALNSGFAESNGDVICVYDADNTPEKMAVYYLVLGLM
                     NDEKAGAVVGKFRVINAAKTLLTRFINIETICFQWMAQGGRWKWFKIATIPGTNFAIR
                     RSIIEKLGGWDDKALAEDTELTIRVYNLGYHIRFFPAAITWEQEPETWKVWWRQRTRW
                     ARGNQYVVLKFLAQFFKLKRKRIIFDLFYFFFTYFLFFFGVIMSNAIFVVNLFYDLHL
                     SVGFLAMILWILAFFLFMTEVMITLSIEKTEMNKQNFFIVFLMYFTYSQAWIVLVIYS
                     LFVEIKHRLFKQEVKWYKTERYNQHKSG*"
                     /label="ydaM CDS"
     gene            464144..465406
                     /gene="ydaM"
                     /locus_tag="BSU_04300"
                     /old_locus_tag="BSU04300"
                     /label="ydaM gene"
     CDS             465412..467523
                     /gene="ydaN"
                     /locus_tag="BSU_04310"
                     /old_locus_tag="BSU04310"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 27897378; Product type
                     r: regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="putative regulator of exopolysaccharide
                     synthesis"
                     /protein_id="NP_388312.1"
                     /db_xref="EnsemblGenomes-Gn:BSU04310"
                     /db_xref="EnsemblGenomes-Tr:CAB12238"
                     /db_xref="GOA:O31488"
                     /db_xref="InterPro:IPR008979"
                     /db_xref="InterPro:IPR018513"
                     /db_xref="SubtiList:BG12061"
                     /db_xref="UniProtKB/Swiss-Prot:O31488"
                     /translation="MKQIMIFLTSFMLLAMTGQTALAKDVQVSGSLLGKSSQEQAKQQ
                     VLTSELITLYGSKDSAELTYQIPAGASSGNQQLVIEYEASNLLISPSSLTVVIDDEPV
                     KTLKLDGDSKRKTVKLNLNKSQSAQGYHNVSLKFYGVMKEGVCVRQDTSGNWIKIYPD
                     SRLTLADSSEAKGTSLDHYPYPFAQSGNTAEETAIVIPDNPSSAEIEAAVKTEGYLKT
                     VDSSVSIAYVTESELKKIDKPTIVIGVDKHWNGKVKKLLKQAGLQAKGENLLLAERVL
                     KAEGKQQPVLFAQAASEDALTKKISVMTDQTYTGQLSGDTLSISKLQQTEKKESDKLT
                     LENFGAGDITIGADKTSSAHYFYPASAVLDENQSAKLSLKLKKSETIQASTAENESAS
                     QAAELKVMINGQPHSVRLDELGKEDKNGFYHVTVKVDPKLLQKNRYIDIQFVTTGLKE
                     NNPCNTTDEEKWVFIDKNSTLSYAIKGMSPSADFQEWPLPYAGNQDQTTLIVLPDTVS
                     QSKLEELSLVTESFGNEAQHSYTVKKSSDVTANDAKGRNLIFIGGINQFSLLKEKSSD
                     LLVPQEKNGSFDVSSFEMLNETTKQVVFTQASVWDSRYTMAVFAPSKGDGTAVTKEII
                     SYLNSNDESATVLNETNSQQVFTNHQQLKSETNSSDAEQPTQDHSQKWMYIGVLALIM
                     VVAAVFIWIAVRRKKRKTDTE*"
                     /label="ydaN CDS"
     gene            465412..467523
                     /gene="ydaN"
                     /locus_tag="BSU_04310"
                     /old_locus_tag="BSU04310"
                     /label="ydaN gene"
     downshifts      467507
                     /Source="Nicolas_upshifts"
                     /id="D196"
                     /incds=0
                     /nref=18
                     /ntot=91
                     /MaxReadThrough="0.438479999999999"
                     /MaxDrop="4.36576"
                     /score="34.1370207"
                     /energy="-9.9"
                     /TU="NA"
                     /idTUdmin="U336"
                     /TUdmin="-4598"
                     /isTUend="FALSE"
                     /label="downshifts"
     promotor_-35    467620..467627
                     /Source="Nicolas_upshift_promotors"
                     /id="U336"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.976023976023976"
                     /psig="0.998001998001998"
                     /xcortree=2720
                     /SigmaFactorBS="cattttatttttttctctcagccaataagccTCTTTACAacg
                     tgcgggaacggGAGTATGATCTCTTTTAGAAaacaaatcgcttaatctgaaatcagag
                     c"
                     /listShort="NA, S142, ydaO, mutT, ydaP"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    467642..467661
                     /Source="Nicolas_upshift_promotors"
                     /id="U336"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.976023976023976"
                     /psig="0.998001998001998"
                     /xcortree=2720
                     /SigmaFactorBS="cattttatttttttctctcagccaataagccTCTTTACAacg
                     tgcgggaacggGAGTATGATCTCTTTTAGAAaacaaatcgcttaatctgaaatcagag
                     c"
                     /listShort="NA, S142, ydaO, mutT, ydaP"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        467649
                     /Source="Nicolas_upshifts"
                     /id="U336"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.976023976023976"
                     /psig="0.998001998001998"
                     /xcortree=2720
                     /SigmaFactorBS="cattttatttttttctctcagccaataagccTCTTTACAacg
                     tgcgggaacggGAGTATGATCTCTTTTAGAAaacaaatcgcttaatctgaaatcagag
                     c"
                     /listShort="NA, S142, ydaO, mutT, ydaP"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     misc_RNA        467659..467802
                     /gene="swaO"
                     /locus_tag="BSU_misc_RNA_7"
                     /product="ATP-, cyclic di-AMP-sensing riboswitch"
                     /experiment="publication(s) with functional evidences,
                     PMID:15096624, 20511502, 23086297, 25086507, 25086509"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 15096624, 20511502,
                     23086297, 25086507, 25086509; Product type n: RNA"
                     /function="16.3: Control"
                     /label="swaO RNA"
     gene            467659..467802
                     /gene="swaO"
                     /locus_tag="BSU_misc_RNA_7"
                     /label="swaO gene"
     downshifts      467800
                     /Source="Nicolas_upshifts"
                     /id="D197"
                     /incds=0
                     /nref=10
                     /ntot=52
                     /MaxReadThrough="7.43698"
                     /MaxDrop="5.83561"
                     /score="30.4392599"
                     /energy="-14.7"
                     /TU="U336"
                     /idTUdmin="U336"
                     /TUdmin="-4305"
                     /isTUend="FALSE"
                     /label="downshifts"
     S_feature       467845..467998
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_486278_486431"
                     /HighExp="LPhT, LBGstat, LPh, T-1.10H, T-0.40H, G135,
                     G180, T-1.40H, G150, C30"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.998"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S142"
     CDS             467999..469822
                     /gene="kimA"
                     /locus_tag="BSU_04320"
                     /old_locus_tag="BSU04320"
                     /function="16.3: Control"
                     /function="16.1: Circulate"
                     /experiment="publication(s) with functional evidences,
                     PMID:15096624, 15849754, 16850406, 20511502, 25086509,
                     26789423, 28420751"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 15096624, 15849754,
                     16850406, 20511502, 25086509, 26789423, 28420751; Product
                     type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="cyclic di-AMP controlled transporter of
                     potassium"
                     /protein_id="NP_388313.1"
                     /db_xref="EnsemblGenomes-Gn:BSU04320"
                     /db_xref="EnsemblGenomes-Tr:CAB12239"
                     /db_xref="GOA:P96589"
                     /db_xref="InterPro:IPR002293"
                     /db_xref="SubtiList:BG12062"
                     /db_xref="UniProtKB/Swiss-Prot:P96589"
                     /translation="MYHSIKRFLIGKPLKSQAAGEQKLTKLKALAMLSSDALSSVAYG
                     TEQILIILATISAAAFWYSIPIAVGVLILLLALILSYRQIIYAYPQGGGAYIVSKENL
                     GEKPGLIAGGSLLVDYILTVAVSISAGTDAITSAFPALHDYHVPIAIFLVLVIMILNL
                     RGLSESASILAYPVYLFVVALLVLIAVGLFKLMTGQIDQPAHHTSLGTPVAGITLFLL
                     LKAFSSGCSALTGVEAISNAIPAFKNPPARNAARTLAMMGILLAILFSGITVLAYGYG
                     TAPKPDETVVSQIASETFGRNVFYYVIQGVTSLILVLAANTGFSAFPQLAFNLARDQY
                     MPRMFTVRGDRLGFSNGIIFLGFASIVLIILFGGQTEHLIPLYAVGVFIPFTLSQTGM
                     CMKWIKQKPKGWIGKMLINSCGALISFMVLSILFVTKFNVVWPVLIFMPIVVLLFFAI
                     KNHYTAVGEQLRIVDKEPEEIKGTVVIVPVAGVTTVVQKSIHYAKSLSDQVIAVHVSF
                     DREQEKKFEKRWEELNNGVRLVTLHSSYRSLVHPFDKFLETVEAKAKKEQFSVMVLFP
                     QFITKKRWHTILHNQSAFLLRVRLFWKKDIMVATLPYHFKK*"
                     /label="kimA CDS"
     gene            467999..469822
                     /gene="kimA"
                     /locus_tag="BSU_04320"
                     /old_locus_tag="BSU04320"
                     /label="kimA gene"
     downshifts      469814
                     /Source="Nicolas_upshifts"
                     /id="D198"
                     /incds=0
                     /nref=50
                     /ntot=181
                     /MaxReadThrough="3.55206"
                     /MaxDrop="4.7232"
                     /score="6.00201196"
                     /energy="-13.9"
                     /TU="U336"
                     /idTUdmin="U336"
                     /TUdmin="-2291"
                     /isTUend="FALSE"
                     /label="downshifts"
     CDS             469881..470330
                     /gene="nudT"
                     /locus_tag="BSU_04330"
                     /old_locus_tag="BSU04330"
                     /EC_number="3.6.1.-"
                     /function="16.8: Protect"
                     /function="16.6: Maintain"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 15576788, 16513759;
                     Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative NTP pyrophosphohydrolase"
                     /protein_id="NP_388314.1"
                     /db_xref="EnsemblGenomes-Gn:BSU04330"
                     /db_xref="EnsemblGenomes-Tr:CAB12240"
                     /db_xref="GOA:P96590"
                     /db_xref="InterPro:IPR000086"
                     /db_xref="InterPro:IPR015797"
                     /db_xref="InterPro:IPR020084"
                     /db_xref="InterPro:IPR020476"
                     /db_xref="SubtiList:BG11956"
                     /db_xref="UniProtKB/Swiss-Prot:P96590"
                     /translation="MYTQGAFVIVLNESQQILLVKRKDVPLWDLPGGRVDPGESAEEA
                     AVREILEETGYNAALSAKIGVYQRPKFQDEQHLFFGSITGGQAMADGTETAGLKWVSP
                     GRLPLFMVPNRKRQINDFKNGAQDVNVTVKDSGLLAAIDLLKRRLGK*"
                     /label="nudT CDS"
     gene            469881..470330
                     /gene="nudT"
                     /locus_tag="BSU_04330"
                     /old_locus_tag="BSU04330"
                     /label="nudT gene"
     promotor_-35    470343..470349
                     /Source="Nicolas_upshift_promotors"
                     /id="U337"
                     /multdbtbs="SigB"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp=1
                     /psig=1
                     /xcortree=192
                     /SigmaFactorBS="tgttgaaaagaagactgggcaagtgattcaggtctccgGGTT
                     TTAaagcctttctcctgTGGTATTGAAAAAAGGAAAaaggaggatacgttatggcaca
                     c"
                     /listShort="ydaP, S145"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    470364..470382
                     /Source="Nicolas_upshift_promotors"
                     /id="U337"
                     /multdbtbs="SigB"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp=1
                     /psig=1
                     /xcortree=192
                     /SigmaFactorBS="tgttgaaaagaagactgggcaagtgattcaggtctccgGGTT
                     TTAaagcctttctcctgTGGTATTGAAAAAAGGAAAaaggaggatacgttatggcaca
                     c"
                     /listShort="ydaP, S145"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        470365
                     /Source="Nicolas_upshifts"
                     /id="U337"
                     /multdbtbs="SigB"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp=1
                     /psig=1
                     /xcortree=192
                     /SigmaFactorBS="tgttgaaaagaagactgggcaagtgattcaggtctccgGGTT
                     TTAaagcctttctcctgTGGTATTGAAAAAAGGAAAaaggaggatacgttatggcaca
                     c"
                     /listShort="ydaP, S145"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             470397..472121
                     /gene="poxB"
                     /locus_tag="BSU_04340"
                     /old_locus_tag="BSU04340"
                     /EC_number="1.2.3.3"
                     /function="16.6: Maintain"
                     /function="16.11: Scavenge (Catabolism)"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 2a: Function from experimental evidences
                     in other organisms; PubMedId: 16291680, 16513748,
                     10220166, 23611909; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-phosphate generating pyruvate oxidase"
                     /protein_id="NP_388315.1"
                     /db_xref="EnsemblGenomes-Gn:BSU04340"
                     /db_xref="EnsemblGenomes-Tr:CAB12241"
                     /db_xref="GOA:P96591"
                     /db_xref="InterPro:IPR000399"
                     /db_xref="InterPro:IPR011766"
                     /db_xref="InterPro:IPR012000"
                     /db_xref="InterPro:IPR012001"
                     /db_xref="InterPro:IPR029035"
                     /db_xref="InterPro:IPR029061"
                     /db_xref="SubtiList:BG12063"
                     /db_xref="UniProtKB/Swiss-Prot:P96591"
                     /translation="MAHKTAGQAMTELLEQWGVDHVYGIPGDSINEFIEELRHERNQL
                     KFIQTRHEEVAALAAAAEAKLTGKIGVCLSIAGPGAVHLLNGLYDAKADGAPVLAIAG
                     QVSSGEVGRDYFQEIKLEQMFEDVAVFNREVHSAESLPDLLNQAIRTAYSKKGVAVLS
                     VSDDLFAEKIKREPVYTSPVYIEGNLEPKKEQLVTCAQYINNAKKPIILAGQGMKKAK
                     RELLEFADKAAAPIVVTLPAKGVVPDKHPHFLGNLGQIGTKPAYEAMEECDLLIMLGT
                     SFPYRDYLPDDTPAIQLDSDPAKIGKRYPVTAGLVCDSALGLRELTEYIERKEDRRFL
                     NACTEHMQHWWNEIEKDETEATTPLKPQQVVARLQEAAADDAVLSVDVGTVTVWMARH
                     FKMNANQDFIVSSWLATMGCGLPGAIAASLSEPERQAIAVCGDGGFSMVMQDLPTAVK
                     YKLPITVVILNNENLGMIEYEQQVKGNIDYVTKLQNVDYAAFAESCGAKGIKVTKAEE
                     LAPAFHEALHSDQPVVVDVMIGNEPPLPGKITYGQAKGFSKYMLKNFFENQKFEMPSL
                     KKSLKRLF*"
                     /label="poxB CDS"
     gene            470397..472121
                     /gene="poxB"
                     /locus_tag="BSU_04340"
                     /old_locus_tag="BSU04340"
                     /label="poxB gene"
     S_feature       complement(471233..472092)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_489666_490525_c"
                     /HighExp="H2O2, Paraq, G180, G150, Oxctl, Diami, dia15,
                     G135, C30, dia5"
                     /AntisenseName="ydaP"
                     /AntisenseCor="-5.0529608261635599E-2"
                     /AntisenseRegPval="-0.4"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="Sig-, SigA, SigA"
                     /TUshortPSig="0.113, 1, 1"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S143"
     S_feature       complement(472094..472205)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_490527_490638_c"
                     /HighExp="dia5, M0t45, S0, S2, S1, Paraq, GM 120, Lbstat,
                     MG 5, UNK1"
                     /AntisenseName="ydaP"
                     /AntisenseCor="1.7026698118644101E-2"
                     /AntisenseRegPval="-0.1"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="Sig-, SigA, SigA"
                     /TUshortPSig="0.113, 1, 1"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S144"
     downshifts      472105
                     /Source="Nicolas_upshifts"
                     /id="D199"
                     /incds=0
                     /nref=50
                     /ntot=166
                     /MaxReadThrough="5.18566"
                     /MaxDrop="6.66568"
                     /score="7.55338633"
                     /energy="-5.3"
                     /TU="U337"
                     /idTUdmin="U336"
                     /TUdmin=0
                     /isTUend="TRUE"
                     /label="downshifts"
     CDS             complement(472113..472316)
                     /locus_tag="BSU_04345"
                     /old_locus_tag="BSU04345"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 5: Unknown function"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_009513943.1"
                     /translation="MIRISMQGQMHLPLKQDAFVLLSVSSMAKSVPNTYTDHFMNSNM
                     LKIHLFPKKKKKTRALRAPVFLK*"
                     /label="hypothetical protein CDS"
     gene            complement(472113..472316)
                     /locus_tag="BSU_04345"
                     /old_locus_tag="BSU04345"
                     /label="gene"
     downshifts      complement(472137)
                     /Source="Nicolas_upshifts"
                     /id="D200"
                     /incds=0
                     /nref=5
                     /ntot=55
                     /MaxReadThrough="4.75809"
                     /MaxDrop="8.06239"
                     /score="11.2659249"
                     /energy="-9.1"
                     /TU="U338,U340,U341"
                     /idTUdmin="U338"
                     /TUdmin="-110"
                     /isTUend="FALSE"
                     /label="downshifts"
     promotor_no_box complement(472165..472265)
                     /Source="Nicolas_upshift_promotors"
                     /id="U338"
                     /multdbtbs="-"
                     /comp="M21"
                     /sig="Sig-"
                     /pcomp="0.445554445554446"
                     /psig="0.112887112887113"
                     /xcortree=1496
                     /SigmaFactorBS="gcatttgtccttttgtctgtttcgagtatggcgaaatcagtt
                     cctaatacatataccgatcattttatgaattcaaacatgctgaaaatacatttgtttc
                     c"
                     /listShort="S144, S143"
                     /GFF_Attribute="listLong"
                     /label="promotor_no_box"
     promotor_-35    472174..472179
                     /Source="Nicolas_upshift_promotors"
                     /id="U339"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.914085914085914"
                     /psig="0.914085914085914"
                     /xcortree=1216
                     /SigmaFactorBS="tgtttttttttttttttttggaaacaaaTGTATTttcagcat
                     gtttgaatTCATAAAATGATCGGTATAtgtattaggaactgatttcgccatactcgaa
                     a"
                     /listShort="S145"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    472196..472214
                     /Source="Nicolas_upshift_promotors"
                     /id="U339"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.914085914085914"
                     /psig="0.914085914085914"
                     /xcortree=1216
                     /SigmaFactorBS="tgtttttttttttttttttggaaacaaaTGTATTttcagcat
                     gtttgaatTCATAAAATGATCGGTATAtgtattaggaactgatttcgccatactcgaa
                     a"
                     /listShort="S145"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(472205)
                     /Source="Nicolas_upshifts"
                     /id="U338"
                     /multdbtbs="-"
                     /comp="M21"
                     /sig="Sig-"
                     /pcomp="0.445554445554446"
                     /psig="0.112887112887113"
                     /xcortree=1496
                     /SigmaFactorBS="gcatttgtccttttgtctgtttcgagtatggcgaaatcagtt
                     cctaatacatataccgatcattttatgaattcaaacatgctgaaaatacatttgtttc
                     c"
                     /listShort="S144, S143"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     S_feature       472206..472421
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_490639_490854"
                     /HighExp="Etha, S4, S8, S5, C30, S7, B60, S6, Salt, B36"
                     /AntisenseName="ydzK"
                     /AntisenseCor="3.8830946787094797E-2"
                     /AntisenseRegPval="-0.3"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigEF, SigB"
                     /TUshortPSig="0.914, 1"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S145"
     upshifts        472206
                     /Source="Nicolas_upshifts"
                     /id="U339"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.914085914085914"
                     /psig="0.914085914085914"
                     /xcortree=1216
                     /SigmaFactorBS="tgtttttttttttttttttggaaacaaaTGTATTttcagcat
                     gtttgaatTCATAAAATGATCGGTATAtgtattaggaactgatttcgccatactcgaa
                     a"
                     /listShort="S145"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     S_feature       complement(472272..472343)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_490705_490776_c"
                     /HighExp="Sw, B60, dia15, dia5, BI, Etha, BC, M9-stat,
                     C90, M0t45"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA, SigA"
                     /TUshortPSig="1, 1"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S146"
     downshifts      complement(472315)
                     /Source="Nicolas_upshifts"
                     /id="D201"
                     /incds=0
                     /nref=21
                     /ntot=191
                     /MaxReadThrough="5.39949"
                     /MaxDrop="5.81865"
                     /score="3.34912028"
                     /energy="-20.3"
                     /TU="U340,U341"
                     /idTUdmin="U343"
                     /TUdmin=0
                     /isTUend="TRUE"
                     /label="downshifts"
     CDS             complement(472344..472610)
                     /gene="ydzK"
                     /locus_tag="BSU_04359"
                     /old_locus_tag="BSU04359"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; Product type m: membrane
                     component"
                     /codon_start=1
                     /transl_table=11
                     /product="putative membrane protein"
                     /protein_id="YP_003097680.1"
                     /db_xref="EnsemblGenomes-Gn:BSU04359"
                     /db_xref="EnsemblGenomes-Tr:CAX52551"
                     /db_xref="GOA:C0H3V4"
                     /db_xref="UniProtKB/Swiss-Prot:C0H3V4"
                     /translation="MSVFILFYLWIVPIVIGILCSVAAHKSKGKMRVAPGIAMIVLSI
                     ISLITAFTAGHTNFHVFIGGMFLFGTFLVGSAFPFFFGLKKKEK*"
                     /label="ydzK CDS"
     gene            complement(472344..472610)
                     /gene="ydzK"
                     /locus_tag="BSU_04359"
                     /old_locus_tag="BSU04359"
                     /label="ydzK gene"
     promotor_-10    complement(472626..472645)
                     /Source="Nicolas_upshift_promotors"
                     /id="U340"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.637362637362637"
                     /psig=1
                     /xcortree=2076
                     /SigmaFactorBS="cttctaaagccggtttttatttttccgcaaaagctcattgAT
                     ACCCTTtttgacagaaaTTTGTTATGATAGAAGAAAAatcggagttttgatgatgtca
                     g"
                     /listShort="ydzK, S146, S144, S143"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(472644)
                     /Source="Nicolas_upshifts"
                     /id="U340"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.637362637362637"
                     /psig=1
                     /xcortree=2076
                     /SigmaFactorBS="cttctaaagccggtttttatttttccgcaaaagctcattgAT
                     ACCCTTtttgacagaaaTTTGTTATGATAGAAGAAAAatcggagttttgatgatgtca
                     g"
                     /listShort="ydzK, S146, S144, S143"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(472657..472664)
                     /Source="Nicolas_upshift_promotors"
                     /id="U340"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.637362637362637"
                     /psig=1
                     /xcortree=2076
                     /SigmaFactorBS="cttctaaagccggtttttatttttccgcaaaagctcattgAT
                     ACCCTTtttgacagaaaTTTGTTATGATAGAAGAAAAatcggagttttgatgatgtca
                     g"
                     /listShort="ydzK, S146, S144, S143"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             complement(472714..473991)
                     /gene="mntH"
                     /locus_tag="BSU_04360"
                     /old_locus_tag="BSU04360"
                     /function="16.1: Circulate"
                     /experiment="publication(s) with functional evidences,
                     PMID:12029030, 12950915, 14580210, 15849754, 16850406,
                     27573840, 27748968"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 12029030, 12950915,
                     14580210, 15849754, 16850406, 27573840, 27748968; Product
                     type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="proton-coupled manganese transporter"
                     /protein_id="NP_388317.1"
                     /db_xref="EnsemblGenomes-Gn:BSU04360"
                     /db_xref="EnsemblGenomes-Tr:CAB12243"
                     /db_xref="GOA:P96593"
                     /db_xref="InterPro:IPR001046"
                     /db_xref="SubtiList:BG12065"
                     /db_xref="UniProtKB/Swiss-Prot:P96593"
                     /translation="MMNKDITAQSPRSKAVQDALDGKIRGFRGLLPFLGPAFIAAIAY
                     IDPGNFATNISAGSKYGYMLLWVILFSNIMALLIQSLSAKLGIATGKNLPEVAREEFP
                     KPVSIGLWIQGELVIIATDLAEFIGAALGLYLLFGIPMLEASIIAAIGSFAILELQRR
                     GYRSLEAGIAGMLFVVVIAFALQTFFAKPDAVSVMKGLFVPAFHGTDSVLLAAGILGA
                     TVMPHAIYLHSALTQRRVVGKTDAERKKIFRFEFIDILIAMLIAGAINASMLIVAAAL
                     FFKNGLFVEDLDVAFQQFGHLVSPMSAALFGIGLLVAGLSSSSVGTLSGDVIMQGFIN
                     YRIPLYVRRFITIIPPILIIASGVNPTTALVLSQVVLSFGIAFALIPLIMFTSNKRIM
                     GSLINAKWITVVSWLIAVLIVALNVFLIVDTFR*"
                     /label="mntH CDS"
     gene            complement(472714..473991)
                     /gene="mntH"
                     /locus_tag="BSU_04360"
                     /old_locus_tag="BSU04360"
                     /label="mntH gene"
     downshifts      complement(472733)
                     /Source="Nicolas_upshifts"
                     /id="D202"
                     /incds=0
                     /nref=170
                     /ntot=242
                     /MaxReadThrough="5.8826"
                     /MaxDrop="4.8109"
                     /score="28.3182556"
                     /energy="-9.6"
                     /TU="U341,U343"
                     /idTUdmin="U342"
                     /TUdmin=0
                     /isTUend="TRUE"
                     /label="downshifts"
     promotor_-10    complement(474053..474072)
                     /Source="Nicolas_upshift_promotors"
                     /id="U341"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.528471528471528"
                     /psig=1
                     /xcortree=1525
                     /SigmaFactorBS="ggaaaaattcagaagtgtattttgaacattttcGGTTGACAa
                     gaaaccgggatGGTCATATGATGTAGATAAAataatttgccttaaggaaactctttgt
                     t"
                     /listShort="mntH, ydzK, S146, S144, S143"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(474065)
                     /Source="Nicolas_upshifts"
                     /id="U341"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.528471528471528"
                     /psig=1
                     /xcortree=1525
                     /SigmaFactorBS="ggaaaaattcagaagtgtattttgaacattttcGGTTGACAa
                     gaaaccgggatGGTCATATGATGTAGATAAAataatttgccttaaggaaactctttgt
                     t"
                     /listShort="mntH, ydzK, S146, S144, S143"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     S_feature       complement(474067..474144)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_492500_492577_c"
                     /HighExp="S6, S8, S7, Etha, S5, Salt, BT, Heat, B36, B60"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigK, SigB"
                     /TUshortPSig="1, 0.993"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S147"
     promotor_-35    complement(474085..474092)
                     /Source="Nicolas_upshift_promotors"
                     /id="U341"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.528471528471528"
                     /psig=1
                     /xcortree=1525
                     /SigmaFactorBS="ggaaaaattcagaagtgtattttgaacattttcGGTTGACAa
                     gaaaccgggatGGTCATATGATGTAGATAAAataatttgccttaaggaaactctttgt
                     t"
                     /listShort="mntH, ydzK, S146, S144, S143"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    complement(474128..474147)
                     /Source="Nicolas_upshift_promotors"
                     /id="U342"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp=1
                     /psig=1
                     /xcortree=1312
                     /SigmaFactorBS="aggcatcgtttcgaaatgaaacgatgtctttttaTATGGGAC
                     CTtatcacgaatcccTACATATCATGTTACATAACagggaaaaattcagaagtgtatt
                     t"
                     /listShort="S147, mntH"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(474144)
                     /Source="Nicolas_upshifts"
                     /id="U342"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp=1
                     /psig=1
                     /xcortree=1312
                     /SigmaFactorBS="aggcatcgtttcgaaatgaaacgatgtctttttaTATGGGAC
                     CTtatcacgaatcccTACATATCATGTTACATAACagggaaaaattcagaagtgtatt
                     t"
                     /listShort="S147, mntH"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(474161..474170)
                     /Source="Nicolas_upshift_promotors"
                     /id="U342"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp=1
                     /psig=1
                     /xcortree=1312
                     /SigmaFactorBS="aggcatcgtttcgaaatgaaacgatgtctttttaTATGGGAC
                     CTtatcacgaatcccTACATATCATGTTACATAACagggaaaaattcagaagtgtatt
                     t"
                     /listShort="S147, mntH"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             complement(474221..474478)
                     /gene="ydaS"
                     /locus_tag="BSU_04370"
                     /old_locus_tag="BSU04370"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved protein of unknown function"
                     /protein_id="NP_388318.1"
                     /db_xref="EnsemblGenomes-Gn:BSU04370"
                     /db_xref="EnsemblGenomes-Tr:CAB12244"
                     /db_xref="GOA:P96594"
                     /db_xref="InterPro:IPR007341"
                     /db_xref="SubtiList:BG12066"
                     /db_xref="UniProtKB/Swiss-Prot:P96594"
                     /translation="MLSFLVSLVVAIVIGLIGSAIVGNRLPGGIFGSMIAGLIGAWIG
                     HGLLGTWGPSLAGFAIFPAIIGAAIFVFLLGLIFRGLRKEA*"
                     /label="ydaS CDS"
     gene            complement(474221..474478)
                     /gene="ydaS"
                     /locus_tag="BSU_04370"
                     /old_locus_tag="BSU04370"
                     /label="ydaS gene"
     downshifts      complement(474229)
                     /Source="Nicolas_upshifts"
                     /id="D203"
                     /incds=0
                     /nref=7
                     /ntot=33
                     /MaxReadThrough="4.70076"
                     /MaxDrop="4.7213"
                     /score="7.04635537"
                     /energy="-13.4"
                     /TU="U343"
                     /idTUdmin="U342"
                     /TUdmin="-1496"
                     /isTUend="FALSE"
                     /label="downshifts"
     downshifts      complement(474295)
                     /Source="Nicolas_upshifts"
                     /id="D204"
                     /incds=1
                     /nref=2
                     /ntot=69
                     /MaxReadThrough="7.55545"
                     /MaxDrop="2.8244"
                     /score="7.04635537"
                     /energy="-13.4"
                     /TU="U343"
                     /idTUdmin="U342"
                     /TUdmin="-1562"
                     /isTUend="FALSE"
                     /label="downshifts"
     CDS             complement(474556..475008)
                     /gene="ydaT"
                     /locus_tag="BSU_04380"
                     /old_locus_tag="BSU04380"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved protein of unknown function"
                     /protein_id="NP_388319.1"
                     /db_xref="EnsemblGenomes-Gn:BSU04380"
                     /db_xref="EnsemblGenomes-Tr:CAB12245"
                     /db_xref="InterPro:IPR018691"
                     /db_xref="SubtiList:BG12067"
                     /db_xref="UniProtKB/Swiss-Prot:P96595"
                     /translation="MPWSMKDYPASLKNLEKPVRKKAIDIANAMIDEGYEEGRAIPIA
                     TSKAKEWAENASTDEIDDFLTHDDETERDADPSSGSGPELMNKAEHVIKHKKGWAVKA
                     EGAKRVSEIKDTKKEAIERAKEIAAHKGTEVIVHLADGSVQRKIKTGS*"
                     /label="ydaT CDS"
     gene            complement(474556..475008)
                     /gene="ydaT"
                     /locus_tag="BSU_04380"
                     /old_locus_tag="BSU04380"
                     /label="ydaT gene"
     promotor_-10    complement(475027..475045)
                     /Source="Nicolas_upshift_promotors"
                     /id="U343"
                     /multdbtbs="SigB"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp="0.993006993006993"
                     /psig="0.993006993006993"
                     /xcortree=230
                     /SigmaFactorBS="ttttttctactatatagtataccttcattttttcggatgCGT
                     TTTTatttttcacctgcGGGTACCATTTTTATAAAAggaaaaggagtgatagacatgc
                     c"
                     /listShort="ydaT, ydaS, S147, mntH, ydzK"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(475044)
                     /Source="Nicolas_upshifts"
                     /id="U343"
                     /multdbtbs="SigB"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp="0.993006993006993"
                     /psig="0.993006993006993"
                     /xcortree=230
                     /SigmaFactorBS="ttttttctactatatagtataccttcattttttcggatgCGT
                     TTTTatttttcacctgcGGGTACCATTTTTATAAAAggaaaaggagtgatagacatgc
                     c"
                     /listShort="ydaT, ydaS, S147, mntH, ydzK"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(475059..475065)
                     /Source="Nicolas_upshift_promotors"
                     /id="U343"
                     /multdbtbs="SigB"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp="0.993006993006993"
                     /psig="0.993006993006993"
                     /xcortree=230
                     /SigmaFactorBS="ttttttctactatatagtataccttcattttttcggatgCGT
                     TTTTatttttcacctgcGGGTACCATTTTTATAAAAggaaaaggagtgatagacatgc
                     c"
                     /listShort="ydaT, ydaS, S147, mntH, ydzK"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     upshifts        475077
                     /Source="Nicolas_upshifts"
                     /id="U344"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.795204795204795"
                     /psig="0.993006993006993"
                     /xcortree=2375
                     /SigmaFactorBS="ctccttttccttttataaaaatggtacccgcaggtgaaaaat
                     aaaaacgcatccgaaaaaatgaaggtATACTATATAGTAGAAAAAAcggaagggaagt
                     g"
                     /listShort="ydbA"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     misc_feature    475085..475104
                     /Source="Nicolas_upshift_promotors"
                     /id="U344"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.795204795204795"
                     /psig="0.993006993006993"
                     /xcortree=2375
                     /SigmaFactorBS="ctccttttccttttataaaaatggtacccgcaggtgaaaaat
                     aaaaacgcatccgaaaaaatgaaggtATACTATATAGTAGAAAAAAcggaagggaagt
                     g"
                     /listShort="ydbA"
                     /GFF_Attribute="listLong"
                     /label="promotor_single_box"
                     /note="Geneious type: promotor_single_box"
     CDS             475126..475944
                     /gene="ydbA"
                     /locus_tag="BSU_04390"
                     /old_locus_tag="BSU04390"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved protein of unknown function"
                     /protein_id="NP_388320.1"
                     /db_xref="EnsemblGenomes-Gn:BSU04390"
                     /db_xref="EnsemblGenomes-Tr:CAB12246"
                     /db_xref="InterPro:IPR024787"
                     /db_xref="SubtiList:BG12068"
                     /db_xref="UniProtKB/Swiss-Prot:P96596"
                     /translation="MPTERKEDLHQQLKEIEKWEKDQQKVWFWEKLSRLPFQLLDKLT
                     PEFIQKKIGKLLDEVGSFVQTGGQYLTSEKQIIRMFQKKLPEEIFESLEDIRKAPLPV
                     MDEIAEGMGKNRTNAATVQGATTGVGGVFTLAADIPAVLGLSLKTLQDIAVAYGYDPK
                     EKKERVFIVKCLQLTSADVVGKRSILQELKHYDQDRTYKNVASQIQGWREVVLGYRDT
                     FGWKKLFQIVPVAGMVFGAAANRSTLNDITETGMMLYKKRRILERLKETEREME*"
                     /label="ydbA CDS"
     gene            475126..475944
                     /gene="ydbA"
                     /locus_tag="BSU_04390"
                     /old_locus_tag="BSU04390"
                     /label="ydbA gene"
     downshifts      475935
                     /Source="Nicolas_upshifts"
                     /id="D205"
                     /incds=0
                     /nref=118
                     /ntot=223
                     /MaxReadThrough="0.66117"
                     /MaxDrop="4.41502"
                     /score="5.38936313"
                     /energy="-9.2"
                     /TU="NA"
                     /idTUdmin="U344"
                     /TUdmin=0
                     /isTUend="TRUE"
                     /label="downshifts"
     promotor_-35    476012..476018
                     /Source="Nicolas_upshift_promotors"
                     /id="U345"
                     /multdbtbs="SigB"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp=1
                     /psig=1
                     /xcortree=219
                     /SigmaFactorBS="ttttagtggaaacatacccaatgtgttttgttTGTTTAAaag
                     aattgtgagcGGGAATACAACAACCAACAccaattaaaggaggaattcaaaatggcag
                     a"
                     /listShort="gsiB"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    476032..476050
                     /Source="Nicolas_upshift_promotors"
                     /id="U345"
                     /multdbtbs="SigB"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp=1
                     /psig=1
                     /xcortree=219
                     /SigmaFactorBS="ttttagtggaaacatacccaatgtgttttgttTGTTTAAaag
                     aattgtgagcGGGAATACAACAACCAACAccaattaaaggaggaattcaaaatggcag
                     a"
                     /listShort="gsiB"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        476040
                     /Source="Nicolas_upshifts"
                     /id="U345"
                     /multdbtbs="SigB"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp=1
                     /psig=1
                     /xcortree=219
                     /SigmaFactorBS="ttttagtggaaacatacccaatgtgttttgttTGTTTAAaag
                     aattgtgagcGGGAATACAACAACCAACAccaattaaaggaggaattcaaaatggcag
                     a"
                     /listShort="gsiB"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             476073..476444
                     /gene="gsiB"
                     /locus_tag="BSU_04400"
                     /old_locus_tag="BSU04400"
                     /function="16.8: Protect"
                     /experiment="publication(s) with functional evidences,
                     PMID:7651322, 9669336, 9763714, 12562800, 21421783"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 7651322, 9669336,
                     9763714, 12562800, 21421783; Product type f: factor"
                     /codon_start=1
                     /transl_table=11
                     /product="general stress protein glucose starvation
                     induced"
                     /protein_id="NP_388321.1"
                     /db_xref="EnsemblGenomes-Gn:BSU04400"
                     /db_xref="EnsemblGenomes-Tr:CAB12247"
                     /db_xref="InterPro:IPR019626"
                     /db_xref="SubtiList:BG10826"
                     /db_xref="UniProtKB/Swiss-Prot:P26907"
                     /translation="MADNNKMSREEAGRKGGETTSKNHDKEFYQEIGQKGGEATSKNH
                     DKEFYQEIGEKGGEATSKNHDKEFYQEIGEKGGEATSENHDKEFYQEIGRKGGEATSK
                     NHDKEFYQEIGSKGGNARNND*"
                     /label="gsiB CDS"
     gene            476073..476444
                     /gene="gsiB"
                     /locus_tag="BSU_04400"
                     /old_locus_tag="BSU04400"
                     /label="gsiB gene"
     downshifts      complement(476077)
                     /Source="Nicolas_upshifts"
                     /id="D206"
                     /incds=0
                     /nref=1
                     /ntot=25
                     /MaxReadThrough="1.50212"
                     /MaxDrop="4.6705"
                     /score="-7.76438364"
                     /energy="-14.2"
                     /TU="NA"
                     /idTUdmin="U346"
                     /TUdmin=0
                     /isTUend="TRUE"
                     /label="downshifts"
     downshifts      476461
                     /Source="Nicolas_upshifts"
                     /id="D207"
                     /incds=0
                     /nref=153
                     /ntot=219
                     /MaxReadThrough="3.75525"
                     /MaxDrop="8.3301"
                     /score="39.7307477"
                     /energy="-16.6"
                     /TU="U345"
                     /idTUdmin="U345"
                     /TUdmin="-24"
                     /isTUend="FALSE"
                     /label="downshifts"
     upshifts        complement(476495)
                     /Source="Nicolas_upshifts"
                     /id="U346"
                     /multdbtbs="-"
                     /comp="M13"
                     /sig="Sig-"
                     /pcomp="0.738261738261738"
                     /psig="0.00899100899100899"
                     /xcortree=120
                     /SigmaFactorBS="cttattgtatctcaatagcggcataaattgagaagattccaa
                     aaaaaagcgatcCAGCtgatgtgccggatcgcttttttatttacaggttgtctgcctt
                     t"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     misc_feature    complement(476498..476501)
                     /Source="Nicolas_upshift_promotors"
                     /id="U346"
                     /multdbtbs="-"
                     /comp="M13"
                     /sig="Sig-"
                     /pcomp="0.738261738261738"
                     /psig="0.00899100899100899"
                     /xcortree=120
                     /SigmaFactorBS="cttattgtatctcaatagcggcataaattgagaagattccaa
                     aaaaaagcgatcCAGCtgatgtgccggatcgcttttttatttacaggttgtctgcctt
                     t"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_single_box"
                     /note="Geneious type: promotor_single_box"
     promotor_-35    476523..476530
                     /Source="Nicolas_upshift_promotors"
                     /id="U347"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.98101898101898"
                     /psig=1
                     /xcortree=2941
                     /SigmaFactorBS="ggcacatcagctggatcgcttttttttggaatctTCTCAATT
                     tatgccgctatTGAGATACAATAAGTGAAAAaggggttttcgctaatgtccaagatgc
                     a"
                     /listShort="ydbB, ydbC"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    476542..476561
                     /Source="Nicolas_upshift_promotors"
                     /id="U347"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.98101898101898"
                     /psig=1
                     /xcortree=2941
                     /SigmaFactorBS="ggcacatcagctggatcgcttttttttggaatctTCTCAATT
                     tatgccgctatTGAGATACAATAAGTGAAAAaggggttttcgctaatgtccaagatgc
                     a"
                     /listShort="ydbB, ydbC"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        476549
                     /Source="Nicolas_upshifts"
                     /id="U347"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.98101898101898"
                     /psig=1
                     /xcortree=2941
                     /SigmaFactorBS="ggcacatcagctggatcgcttttttttggaatctTCTCAATT
                     tatgccgctatTGAGATACAATAAGTGAAAAaggggttttcgctaatgtccaagatgc
                     a"
                     /listShort="ydbB, ydbC"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             476576..476917
                     /gene="ydbB"
                     /locus_tag="BSU_04410"
                     /old_locus_tag="BSU04410"
                     /function="16.11: Scavenge (Catabolism)"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 10704478; Product type
                     e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative enzyme; cupin family"
                     /protein_id="NP_388322.1"
                     /db_xref="EnsemblGenomes-Gn:BSU04410"
                     /db_xref="EnsemblGenomes-Tr:CAB12248"
                     /db_xref="GOA:P96597"
                     /db_xref="InterPro:IPR011051"
                     /db_xref="InterPro:IPR013096"
                     /db_xref="InterPro:IPR014710"
                     /db_xref="InterPro:IPR019780"
                     /db_xref="SubtiList:BG12069"
                     /db_xref="UniProtKB/Swiss-Prot:P96597"
                     /translation="MSKMQNLLAIANEVKEKHANFSISEVNDHCVRLAVFTGEYDWHH
                     HPDSDELFIVLEGELLIDFKDKETAVLKANDSLLIPKGTVHRTRSYVRTVNLCVEHKQ
                     AETVIIEEQPC*"
                     /label="ydbB CDS"
     gene            476576..476917
                     /gene="ydbB"
                     /locus_tag="BSU_04410"
                     /old_locus_tag="BSU04410"
                     /label="ydbB gene"
     CDS             476911..477270
                     /gene="ydbC"
                     /locus_tag="BSU_04420"
                     /old_locus_tag="BSU04420"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved protein of unknown function"
                     /protein_id="NP_388323.1"
                     /db_xref="EnsemblGenomes-Gn:BSU04420"
                     /db_xref="EnsemblGenomes-Tr:CAB12249"
                     /db_xref="InterPro:IPR011008"
                     /db_xref="InterPro:IPR032555"
                     /db_xref="SubtiList:BG12070"
                     /db_xref="UniProtKB/Swiss-Prot:P96598"
                     /translation="MLIKKMICEVDAANAEAFAKAQSQWEALSHISGFIKQAGGWRKT
                     IDEPLTAEIISVWENREAYDHFMENEHDSIYEENDQKAVILSIEVTVYEEDKPFVHDL
                     LHNPDIRYEPNWTVLKA*"
                     /label="ydbC CDS"
     gene            476911..477270
                     /gene="ydbC"
                     /locus_tag="BSU_04420"
                     /old_locus_tag="BSU04420"
                     /label="ydbC gene"
     S_feature       complement(476973..477266)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_495406_495699_c"
                     /HighExp="Etha, Salt, M9-stat, C30, Heat, Sw, B60, S8,
                     C90, UNK1"
                     /AntisenseName="ydbC"
                     /AntisenseCor="0.16172626521480701"
                     /AntisenseRegPval="-2.1"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigB"
                     /TUshortPSig=1
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S148"
     downshifts      477211
                     /Source="Nicolas_upshifts"
                     /id="D208"
                     /incds=0
                     /nref=2
                     /ntot=130
                     /MaxReadThrough="1.8663"
                     /MaxDrop="2.67081"
                     /score="39.7307477"
                     /energy="-16.6"
                     /TU="NA"
                     /idTUdmin="U347"
                     /TUdmin=0
                     /isTUend="TRUE"
                     /label="downshifts"
     downshifts      477255
                     /Source="Nicolas_upshifts"
                     /id="D209"
                     /incds=0
                     /nref=1
                     /ntot=28
                     /MaxReadThrough="0.252220000000001"
                     /MaxDrop="2.61185"
                     /score="39.7307477"
                     /energy="-16.6"
                     /TU="NA"
                     /idTUdmin="U347"
                     /TUdmin=44
                     /isTUend="FALSE"
                     /label="downshifts"
     CDS             complement(477307..478128)
                     /gene="ydbD"
                     /locus_tag="BSU_04430"
                     /old_locus_tag="BSU04430"
                     /EC_number="1.11.1.6"
                     /function="16.8: Protect"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 15231799; Product type
                     e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative manganese-containing catalase"
                     /protein_id="NP_388324.1"
                     /db_xref="EnsemblGenomes-Gn:BSU04430"
                     /db_xref="EnsemblGenomes-Tr:CAB12250"
                     /db_xref="GOA:P80878"
                     /db_xref="InterPro:IPR007760"
                     /db_xref="InterPro:IPR009078"
                     /db_xref="InterPro:IPR012347"
                     /db_xref="InterPro:IPR027407"
                     /db_xref="SubtiList:BG12071"
                     /db_xref="UniProtKB/Swiss-Prot:P80878"
                     /translation="MFKHTKMLQHPAKPDRPDPLFAKKMQEILGGQFGEISVAMQYLF
                     QGWNTRGNEKYKDLLMDTATEELGHVEMIATMIARLLEDAPLDQQEKAAEDPVIGSIL
                     GGMNPHHAIVSGLGAMPESSTGVPWSGGYIVASGNLLADFRANLNAESQGRLQVARLF
                     EMTDDKGVKDMLSFLLARDTMHQNQWLAAIKELEAQEGPVVPGTFPKALEKQEFSHQL
                     INFSEGEVSAEQNWLNEKAPDGEAFEYVKEAKTFGEKPELKPAPPFVHNTLPGRE*"
                     /label="ydbD CDS"
     gene            complement(477307..478128)
                     /gene="ydbD"
                     /locus_tag="BSU_04430"
                     /old_locus_tag="BSU04430"
                     /label="ydbD gene"
     downshifts      complement(477311)
                     /Source="Nicolas_upshifts"
                     /id="D210"
                     /incds=0
                     /nref=62
                     /ntot=214
                     /MaxReadThrough="4.23505"
                     /MaxDrop="6.82771"
                     /score="-6.55917314"
                     /energy="-13.1"
                     /TU="U348"
                     /idTUdmin="U348"
                     /TUdmin="-310"
                     /isTUend="FALSE"
                     /label="downshifts"
     promotor_-10    complement(478150..478168)
                     /Source="Nicolas_upshift_promotors"
                     /id="U348"
                     /multdbtbs="SigB"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp=1
                     /psig=1
                     /xcortree=193
                     /SigmaFactorBS="gctgcgaaaagattcatagttcccatctcgatacgctgtttt
                     tCGTTTATctttctatcgatcGGAAATATAAAAAGAGATAaacgaaaaaggagatggg
                     t"
                     /listShort="ydbD, S148"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(478171)
                     /Source="Nicolas_upshifts"
                     /id="U348"
                     /multdbtbs="SigB"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp=1
                     /psig=1
                     /xcortree=193
                     /SigmaFactorBS="gctgcgaaaagattcatagttcccatctcgatacgctgtttt
                     tCGTTTATctttctatcgatcGGAAATATAAAAAGAGATAaacgaaaaaggagatggg
                     t"
                     /listShort="ydbD, S148"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(478182..478188)
                     /Source="Nicolas_upshift_promotors"
                     /id="U348"
                     /multdbtbs="SigB"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp=1
                     /psig=1
                     /xcortree=193
                     /SigmaFactorBS="gctgcgaaaagattcatagttcccatctcgatacgctgtttt
                     tCGTTTATctttctatcgatcGGAAATATAAAAAGAGATAaacgaaaaaggagatggg
                     t"
                     /listShort="ydbD, S148"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             complement(478213..479265)
                     /gene="dctB"
                     /locus_tag="BSU_04440"
                     /old_locus_tag="BSU04440"
                     /function="16.12: Sense"
                     /experiment="publication(s) with functional evidences,
                     PMID:1809844, 10708364, 11566984, 24375102"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 1809844, 10708364,
                     11566984, 24375102; Product type rc: receptor"
                     /codon_start=1
                     /transl_table=11
                     /product="membrane bound C4-dicarboxylate binding sensor
                     protein"
                     /protein_id="NP_388325.1"
                     /db_xref="EnsemblGenomes-Gn:BSU04440"
                     /db_xref="EnsemblGenomes-Tr:CAB12251"
                     /db_xref="GOA:P96600"
                     /db_xref="InterPro:IPR004682"
                     /db_xref="InterPro:IPR018389"
                     /db_xref="SubtiList:BG12072"
                     /db_xref="UniProtKB/Swiss-Prot:P96600"
                     /translation="MKSLLACLALMIAGIATALFIGFHDHTGNKKIVYDDDQEGLQDQ
                     IVFKFSHVVAENTPKGLAANKFADLVNEKSGGKIKIEVFPNGSLYSDIEEIEALQNGD
                     VQFIAPSTSKLGMLSPEWGVLDLPYAFTDYNAVKKGLNGSIGTQLFDSLKKNQLKGLA
                     YWTNGFKQITTNQGPVKTPDDLKGQDLRIMQSDVIEDQFKLLGATPHQESFNSTFQLL
                     ENNVVDGEENTISNIYSKKFYNVQDYLTISSHGYLGYAVMTDEHFWKAQTPETRRILT
                     EAMKETTEWNETYAEQMNKEQLEEIKKNSAIHIYELSDKEKQEWMKRLDPVYRQYEPI
                     FGRELIRELLELRKDS*"
                     /label="dctB CDS"
     gene            complement(478213..479265)
                     /gene="dctB"
                     /locus_tag="BSU_04440"
                     /old_locus_tag="BSU04440"
                     /label="dctB gene"
     promotor_-35    478525..478532
                     /Source="Nicolas_upshift_promotors"
                     /id="U349"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.882117882117882"
                     /psig=1
                     /xcortree=1811
                     /SigmaFactorBS="cagtcatgacagcgtagccgagataaccgtggctgctTATTG
                     TCAaatagtcctgaacaTTATAAAATTTTTTAGAATAgatgtttgaaattgtattttc
                     t"
                     /listShort="S149, dctS"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     S_feature       478547..479334
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_496980_497767"
                     /HighExp="LBGstat, Diami, T-0.40H, T0.0H, T0.30H, Heat,
                     UNK1, GM-0.1, MG 90, Fru"
                     /AntisenseName="dctB"
                     /AntisenseCor="0.64205060306327899"
                     /AntisenseRegPval="-31.9"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig=1
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S149"
     promotor_-10    478547..478566
                     /Source="Nicolas_upshift_promotors"
                     /id="U349"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.882117882117882"
                     /psig=1
                     /xcortree=1811
                     /SigmaFactorBS="cagtcatgacagcgtagccgagataaccgtggctgctTATTG
                     TCAaatagtcctgaacaTTATAAAATTTTTTAGAATAgatgtttgaaattgtattttc
                     t"
                     /listShort="S149, dctS"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        478548
                     /Source="Nicolas_upshifts"
                     /id="U349"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.882117882117882"
                     /psig=1
                     /xcortree=1811
                     /SigmaFactorBS="cagtcatgacagcgtagccgagataaccgtggctgctTATTG
                     TCAaatagtcctgaacaTTATAAAATTTTTTAGAATAgatgtttgaaattgtattttc
                     t"
                     /listShort="S149, dctS"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-10    complement(479278..479297)
                     /Source="Nicolas_upshift_promotors"
                     /id="U350"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.515484515484515"
                     /psig="0.937062937062937"
                     /xcortree=1551
                     /SigmaFactorBS="tttgttcatcagcttctcctttcagGTCTTTACgaatgtcat
                     agccCCCATTATCCTTAACATAGGggagggcttttcatgaagagtttgcttgcatgtc
                     t"
                     /listShort="dctB"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(479283)
                     /Source="Nicolas_upshifts"
                     /id="U350"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.515484515484515"
                     /psig="0.937062937062937"
                     /xcortree=1551
                     /SigmaFactorBS="tttgttcatcagcttctcctttcagGTCTTTACgaatgtcat
                     agccCCCATTATCCTTAACATAGGggagggcttttcatgaagagtttgcttgcatgtc
                     t"
                     /listShort="dctB"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(479311..479318)
                     /Source="Nicolas_upshift_promotors"
                     /id="U350"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.515484515484515"
                     /psig="0.937062937062937"
                     /xcortree=1551
                     /SigmaFactorBS="tttgttcatcagcttctcctttcagGTCTTTACgaatgtcat
                     agccCCCATTATCCTTAACATAGGggagggcttttcatgaagagtttgcttgcatgtc
                     t"
                     /listShort="dctB"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             479335..480942
                     /gene="dctS"
                     /locus_tag="BSU_04450"
                     /old_locus_tag="BSU04450"
                     /function="16.3: Control"
                     /function="16.12: Sense"
                     /experiment="publication(s) with functional evidences,
                     PMID:10627041, 11717295, 1290636, 12949159, 24375102"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 10627041, 11717295,
                     1290636, 12949159, 24375102; Product type rc: receptor"
                     /codon_start=1
                     /transl_table=11
                     /product="two-component sensor histidine kinase"
                     /protein_id="NP_388326.1"
                     /db_xref="EnsemblGenomes-Gn:BSU04450"
                     /db_xref="EnsemblGenomes-Tr:CAB12252"
                     /db_xref="GOA:P96601"
                     /db_xref="InterPro:IPR000014"
                     /db_xref="InterPro:IPR003594"
                     /db_xref="InterPro:IPR004358"
                     /db_xref="InterPro:IPR005467"
                     /db_xref="InterPro:IPR016120"
                     /db_xref="InterPro:IPR029151"
                     /db_xref="InterPro:IPR033463"
                     /db_xref="InterPro:IPR035965"
                     /db_xref="InterPro:IPR036890"
                     /db_xref="SubtiList:BG12073"
                     /db_xref="UniProtKB/Swiss-Prot:P96601"
                     /translation="MNKKKLSIRWKITILSYILVIFSFLIGGIVLIGNIQHTEERELK
                     KRLMNTARTVSEMTEVKEALARKKQTEAVRHAVEEIRMINEADYIVVMDMNHIRYTHP
                     VSTSIGKKSEGADEEAAFAEHIYFSEAKGEIGTAVRAFYPVKDQDLNQIGVVLVGKTL
                     PGIADILLHLKRDIAFIVVLTLGFGLAGSFLLARHIKKQMFQLEPHEIVRMYEERTAT
                     FHSMNEGVIAIDNRLVITIFNEKAKQIFEVQGDLIGKVIWEVLKDSRLPEIVERNKAV
                     YNEEIRVSGKVIMSSRIPIVMKKKVIGAVAIFQDRTEAAKMAEELTGVRNFVEALRVQ
                     NHEHMNKLHTIAGLIQLGKSEKALQLAFQASTEQENVTEFLHRSIQNDAAAGLLLSKI
                     RRGRELGIAVHIDENSSLQQFPEHVDQHDIVVLLGNLIENAFGSFETVQSEDKRIDIS
                     IEQTDDILAILIEDNGCGIEPTHMPRLYDKGFTVNKTGGTGYGLYLVKQIIDKGSGTI
                     EVDSHAGQGTSFSIVFPMKGEEAQHGS*"
                     /label="dctS CDS"
     gene            479335..480942
                     /gene="dctS"
                     /locus_tag="BSU_04450"
                     /old_locus_tag="BSU04450"
                     /label="dctS gene"
     CDS             480932..481612
                     /gene="dctR"
                     /locus_tag="BSU_04460"
                     /old_locus_tag="BSU04460"
                     /function="16.3: Control"
                     /experiment="publication(s) with functional evidences,
                     PMID:10627041, 11717295, 1290636, 12949159"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 10627041, 11717295,
                     1290636, 12949159; Product type r: regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="two-component response regulator"
                     /protein_id="NP_388327.1"
                     /db_xref="EnsemblGenomes-Gn:BSU04460"
                     /db_xref="EnsemblGenomes-Tr:CAB12253"
                     /db_xref="GOA:P96602"
                     /db_xref="InterPro:IPR001034"
                     /db_xref="InterPro:IPR001789"
                     /db_xref="InterPro:IPR011006"
                     /db_xref="InterPro:IPR024187"
                     /db_xref="InterPro:IPR036388"
                     /db_xref="InterPro:IPR036390"
                     /db_xref="SubtiList:BG12074"
                     /db_xref="UniProtKB/Swiss-Prot:P96602"
                     /translation="MARKEWKVLLIEDDPMVQEVNKDFITTVKGVTVCATAGNGEEGM
                     KLIKEEQPDLVILDVYMPKKDGIKTLQEIRKQKLEVDVIVVSAAKDKETISLMLQNGA
                     VDYILKPFKLERMRQALEKYKQYKQKIEANDTLSQEQLDAILNIPQQAVQDLPKGLNH
                     FTMNEVTAFLKQQTASLSAEEVAKALGIARVTARRYLDYLEKTGIIKLDVQYGGVGRP
                     VNRYVLKG*"
                     /label="dctR CDS"
     gene            480932..481612
                     /gene="dctR"
                     /locus_tag="BSU_04460"
                     /old_locus_tag="BSU04460"
                     /label="dctR gene"
     S_feature       481613..481687
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_500046_500120"
                     /HighExp="Sw, Diami, Mt0, G150, BI, Lbstat, M40t45,
                     Lbtran, Mal, Oxctl"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="NA"
                     /TUshortPSig="NA"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S150"
     promotor_-35    481654..481661
                     /Source="Nicolas_upshift_promotors"
                     /id="U351"
                     /multdbtbs="SigA"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.450549450549451"
                     /psig="0.96003996003996"
                     /xcortree=1558
                     /SigmaFactorBS="accaaaatgtccgttatgatcataaACTTCCCCagactgtat
                     gaaaaCGCTATCATTCTAGTAAGaaagacacaaaaggcgaataggacagggggatgaa
                     g"
                     /listShort="dctP"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    481676..481693
                     /Source="Nicolas_upshift_promotors"
                     /id="U351"
                     /multdbtbs="SigA"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.450549450549451"
                     /psig="0.96003996003996"
                     /xcortree=1558
                     /SigmaFactorBS="accaaaatgtccgttatgatcataaACTTCCCCagactgtat
                     gaaaaCGCTATCATTCTAGTAAGaaagacacaaaaggcgaataggacagggggatgaa
                     g"
                     /listShort="dctP"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        481689
                     /Source="Nicolas_upshifts"
                     /id="U351"
                     /multdbtbs="SigA"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.450549450549451"
                     /psig="0.96003996003996"
                     /xcortree=1558
                     /SigmaFactorBS="accaaaatgtccgttatgatcataaACTTCCCCagactgtat
                     gaaaaCGCTATCATTCTAGTAAGaaagacacaaaaggcgaataggacagggggatgaa
                     g"
                     /listShort="dctP"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             481733..482998
                     /gene="dctP"
                     /locus_tag="BSU_04470"
                     /old_locus_tag="BSU04470"
                     /function="16.1: Circulate"
                     /experiment="publication(s) with functional evidences,
                     PMID:10627041, 10708364, 12949159, 15849754, 16850406,
                     20363944, 22389480"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 10627041, 10708364,
                     12949159, 15849754, 16850406, 20363944, 22389480; Product
                     type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="C4-dicarboxylate transport protein"
                     /protein_id="NP_388328.1"
                     /db_xref="EnsemblGenomes-Gn:BSU04470"
                     /db_xref="EnsemblGenomes-Tr:CAB12254"
                     /db_xref="GOA:P96603"
                     /db_xref="InterPro:IPR001991"
                     /db_xref="InterPro:IPR018107"
                     /db_xref="InterPro:IPR023954"
                     /db_xref="InterPro:IPR036458"
                     /db_xref="SubtiList:BG12075"
                     /db_xref="UniProtKB/Swiss-Prot:P96603"
                     /translation="MKLFKNLTVQVITAVIIGVIVGLVWPDVGKEMKPLGDTFINAVK
                     MVIAPIIFFTIVLGIAKMGDMKKVGKVGGKAFIYFEVVTTLALIIGLFVVNIMKPGAG
                     LDYSKLEKGDVSQYTQNGGQGIDWIEFITHIVPSNMVDAFAKGDILQVLFFSILFGVG
                     LAALGEKGKSVIDFFDKVSHVFFKIIGYIMRAAPIGAFGAMAYTIGHFGLDSIKPLAS
                     LMMSVYITMFLFVFVALNIICKLYGFSLWNYLRFIKDELLIVLGTSSSESVLPRMMDK
                     MERYGCSKSVVGLVIPTGYSFNLDGTSIYLSMATVFLAQVFGVDLSIGQQITIILVLM
                     LTSKGAAGVTGSGFIVLASTLSALQVIPLEGLALLLGVDRFMSEGRAIVNLIGNGIAT
                     IIVAKSENEFDEAKSIEAVEGMKKMKTAV*"
                     /label="dctP CDS"
     gene            481733..482998
                     /gene="dctP"
                     /locus_tag="BSU_04470"
                     /old_locus_tag="BSU04470"
                     /label="dctP gene"
     downshifts      482991
                     /Source="Nicolas_upshifts"
                     /id="D211"
                     /incds=0
                     /nref=175
                     /ntot=235
                     /MaxReadThrough="3.99042"
                     /MaxDrop="7.04798"
                     /score="45.0636559"
                     /energy="-12.6"
                     /TU="NA"
                     /idTUdmin="U351"
                     /TUdmin=0
                     /isTUend="TRUE"
                     /label="downshifts"
     downshifts      complement(483045)
                     /Source="Nicolas_upshifts"
                     /id="D212"
                     /incds=0
                     /nref=1
                     /ntot=9
                     /MaxReadThrough="0.588190000000001"
                     /MaxDrop="3.06255"
                     /score="19.3433396"
                     /energy="-12.6"
                     /TU="NA"
                     /idTUdmin="U350"
                     /TUdmin="-4818"
                     /isTUend="FALSE"
                     /label="downshifts"
     misc_feature    483082..483099
                     /Source="Nicolas_upshift_promotors"
                     /id="U352"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="Sig-"
                     /pcomp="0.423576423576424"
                     /psig="0.483516483516484"
                     /xcortree=1457
                     /SigmaFactorBS="gtttttttaattgtttaagaattattaaggtaaggacagaga
                     cctcagcatttttttgTTATATAATTTACAAATGgatactatattgaatgaaggacgt
                     t"
                     /listShort="ydbI, S151, ydbJ, ydbK, ydbL, S152, ydbM"
                     /GFF_Attribute="listLong"
                     /label="promotor_single_box"
                     /note="Geneious type: promotor_single_box"
     upshifts        483084
                     /Source="Nicolas_upshifts"
                     /id="U352"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="Sig-"
                     /pcomp="0.423576423576424"
                     /psig="0.483516483516484"
                     /xcortree=1457
                     /SigmaFactorBS="gtttttttaattgtttaagaattattaaggtaaggacagaga
                     cctcagcatttttttgTTATATAATTTACAAATGgatactatattgaatgaaggacgt
                     t"
                     /listShort="ydbI, S151, ydbJ, ydbK, ydbL, S152, ydbM"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             483146..484198
                     /gene="ydbI"
                     /locus_tag="BSU_04480"
                     /old_locus_tag="BSU04480"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 15849754, 16850406;
                     Product type m: membrane component"
                     /codon_start=1
                     /transl_table=11
                     /product="putative integral inner membrane protein"
                     /protein_id="NP_388329.1"
                     /db_xref="EnsemblGenomes-Gn:BSU04480"
                     /db_xref="EnsemblGenomes-Tr:CAB12255"
                     /db_xref="GOA:P96604"
                     /db_xref="InterPro:IPR002549"
                     /db_xref="SubtiList:BG12076"
                     /db_xref="UniProtKB/Swiss-Prot:P96604"
                     /translation="MAALVKFFQHPGVRRFSIFVVLTGVLYLFKSMINLILLTFIFTF
                     LMDRLELVVRQFVSQFFRVSQRVVITFLYMLLAVLLTVGGFVFYPVVAAQIQQLVKQI
                     KHIAYHPDSIPFFDEITSVFGDINISSYVKEGFNVVYTYLADISTFGLQVVMALILSM
                     FFLFEKKRLSEFMAKFKTSKLRVFYEEIAFFGSKFARTFGKVLEAQFIIALVNCILTF
                     IALWIMHFPQLFGLSIMVFFLGLIPVAGVVISLIPLSIIAYSTGGGMYVLYIVLVIFA
                     IHAIETYFLNPKLMSAKTELPIFFTFTVLIFSEHFFGIWGLIIGIPIFVFLLDILDVT
                     NKEDRSKGPRENSDKK*"
                     /label="ydbI CDS"
     gene            483146..484198
                     /gene="ydbI"
                     /locus_tag="BSU_04480"
                     /old_locus_tag="BSU04480"
                     /label="ydbI gene"
     S_feature       484199..484442
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_502632_502875"
                     /HighExp="S8, S5, S6, LoTm, S7, S3, LBGstat, LBGexp,
                     Paraq, Sw"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="0.87223499999999998"
                     /TUshortSig="Sig-"
                     /TUshortPSig="0.484"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S151"
     downshifts      484399
                     /Source="Nicolas_upshifts"
                     /id="D213"
                     /incds=0
                     /nref=6
                     /ntot=45
                     /MaxReadThrough="6.05001"
                     /MaxDrop="3.52626"
                     /score="17.6400305"
                     /energy="-12.4"
                     /TU="U352"
                     /idTUdmin="U351"
                     /TUdmin=1408
                     /isTUend="FALSE"
                     /label="downshifts"
     CDS             484475..485401
                     /gene="ydbJ"
                     /locus_tag="BSU_04490"
                     /old_locus_tag="BSU04490"
                     /function="16.1: Circulate"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="putative ABC transporter (ATP-binding subunit)"
                     /protein_id="NP_388330.1"
                     /db_xref="EnsemblGenomes-Gn:BSU04490"
                     /db_xref="EnsemblGenomes-Tr:CAB12256"
                     /db_xref="GOA:P96605"
                     /db_xref="InterPro:IPR003439"
                     /db_xref="InterPro:IPR003593"
                     /db_xref="InterPro:IPR017871"
                     /db_xref="InterPro:IPR027417"
                     /db_xref="SubtiList:BG12077"
                     /db_xref="UniProtKB/Swiss-Prot:P96605"
                     /translation="MAEPILHIEGLDKKIGSKQILKQISMDVMEGEIIGLLGPNGSGK
                     TTLIRIIVGLLKQNSGSVTISGFQHDTEFEKAMEAVGAIVENPEFYPYLTGWENLKHF
                     ANMHKKIADERLDEVVERVGLTSAIHDKVKTYSLGMRQRLGIAQAILHRPKLLILDEP
                     TNGLDPAGMKDFRDHIKELAEMEGTAVLFATHLLREVEDLCDRVIIIQKGEIKAEVSL
                     QGTDQTTEKAIIEVQPQEKALNWLTGNQYQAESQDGTIVVEVAKENIPELNRSLVGQD
                     LNVFSITPYTQSLEDEFIKATTAHQEEGEELV*"
                     /label="ydbJ CDS"
     gene            484475..485401
                     /gene="ydbJ"
                     /locus_tag="BSU_04490"
                     /old_locus_tag="BSU04490"
                     /label="ydbJ gene"
     CDS             485421..486161
                     /gene="ydbK"
                     /locus_tag="BSU_04500"
                     /old_locus_tag="BSU04500"
                     /function="16.1: Circulate"
                     /function="16.8: Protect"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 12486040, 15849754,
                     16850406; Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="putative efflux ABC-transporter (permease
                     subunit)"
                     /protein_id="NP_388331.1"
                     /db_xref="EnsemblGenomes-Gn:BSU04500"
                     /db_xref="EnsemblGenomes-Tr:CAB12257"
                     /db_xref="GOA:P96606"
                     /db_xref="InterPro:IPR032688"
                     /db_xref="SubtiList:BG12078"
                     /db_xref="UniProtKB/Swiss-Prot:P96606"
                     /translation="MKLFNRKVTLVSLILMAVFQFFMALIIKRIVISAGTDENFIGYL
                     SYTPSLNILLQALTIVIAATIVSMEFDKKTIKFLLIRPVKRQKVFWSKLITVVMVSFY
                     LYLAYYILALLFGLLFFGTSVTAESKTLLVNTLALIGSNWLEAVMMGLFGLLCSSLFR
                     NSAVAVVVSFVVLYGASTLVQLMKLFENKWGSFLLFANTDFTQYRSGETALFSGMTPL
                     FSIGILIIHAIFFIVVGWWCFCKRDVRV*"
                     /label="ydbK CDS"
     gene            485421..486161
                     /gene="ydbK"
                     /locus_tag="BSU_04500"
                     /old_locus_tag="BSU04500"
                     /label="ydbK gene"
     misc_feature    486220..486239
                     /Source="Nicolas_upshift_promotors"
                     /id="U353"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.612387612387612"
                     /psig="0.99000999000999"
                     /xcortree=1624
                     /SigmaFactorBS="caaggaatgacatttttgtgaaaaagctcacgtaaatcaata
                     tcatttgatatttTGGTTTATACTAAAGGTACTgacggaggtgtctcgattgaggaac
                     t"
                     /listShort="ydbL, S152, ydbM"
                     /GFF_Attribute="listLong"
                     /label="promotor_single_box"
                     /note="Geneious type: promotor_single_box"
     upshifts        486225
                     /Source="Nicolas_upshifts"
                     /id="U353"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.612387612387612"
                     /psig="0.99000999000999"
                     /xcortree=1624
                     /SigmaFactorBS="caaggaatgacatttttgtgaaaaagctcacgtaaatcaata
                     tcatttgatatttTGGTTTATACTAAAGGTACTgacggaggtgtctcgattgaggaac
                     t"
                     /listShort="ydbL, S152, ydbM"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             486256..486591
                     /gene="ydbL"
                     /locus_tag="BSU_04510"
                     /old_locus_tag="BSU04510"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 17928292; Product type
                     t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="putative glyco-prenyl flippase subunit"
                     /protein_id="NP_388332.1"
                     /db_xref="EnsemblGenomes-Gn:BSU04510"
                     /db_xref="EnsemblGenomes-Tr:CAB12258"
                     /db_xref="GOA:P96607"
                     /db_xref="SubtiList:BG12079"
                     /db_xref="UniProtKB/Swiss-Prot:P96607"
                     /translation="MRNFITALPIVLLLGFSFVSFMFQFEHLVYFRLALGLFSLVGLY
                     MIYKMKTGIRYFIIYLYASWIVLAAVTAFEEPIFSSFFFGGLVMTMGYLTYMLIYLGM
                     KQDRDANPV*"
                     /label="ydbL CDS"
     gene            486256..486591
                     /gene="ydbL"
                     /locus_tag="BSU_04510"
                     /old_locus_tag="BSU04510"
                     /label="ydbL gene"
     downshifts      486566
                     /Source="Nicolas_upshifts"
                     /id="D214"
                     /incds=0
                     /nref=2
                     /ntot=99
                     /MaxReadThrough="5.33473"
                     /MaxDrop="5.39081"
                     /score="25.8152101"
                     /energy="-18.4"
                     /TU="U352,U353"
                     /idTUdmin="U352"
                     /TUdmin="-1177"
                     /isTUend="FALSE"
                     /label="downshifts"
     S_feature       486611..486680
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_505044_505113"
                     /HighExp="ferm, nit, S2, S0, Gly, M0t45, M0t90, Lbstat,
                     M/G, M40t90"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA, Sig-"
                     /TUshortPSig="0.99, 0.484"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S152"
     promotor_-35    486646..486653
                     /Source="Nicolas_upshift_promotors"
                     /id="U354"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.572427572427572"
                     /psig="0.973026973026973"
                     /xcortree=1741
                     /SigmaFactorBS="ttttctatactgggcaaaaggttaaCAGTTGCGgaaaaatgg
                     caggAAATCTATAATACATATTAAatttatcggaattaaaactggggggctgccggat
                     g"
                     /listShort="ydbM"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    486667..486686
                     /Source="Nicolas_upshift_promotors"
                     /id="U354"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.572427572427572"
                     /psig="0.973026973026973"
                     /xcortree=1741
                     /SigmaFactorBS="ttttctatactgggcaaaaggttaaCAGTTGCGgaaaaatgg
                     caggAAATCTATAATACATATTAAatttatcggaattaaaactggggggctgccggat
                     g"
                     /listShort="ydbM"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        486681
                     /Source="Nicolas_upshifts"
                     /id="U354"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.572427572427572"
                     /psig="0.973026973026973"
                     /xcortree=1741
                     /SigmaFactorBS="ttttctatactgggcaaaaggttaaCAGTTGCGgaaaaatgg
                     caggAAATCTATAATACATATTAAatttatcggaattaaaactggggggctgccggat
                     g"
                     /listShort="ydbM"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             486719..487864
                     /gene="ydbM"
                     /locus_tag="BSU_04520"
                     /old_locus_tag="BSU04520"
                     /EC_number="1.3.99.-"
                     /function="16.11: Scavenge (Catabolism)"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 12193636, 16513748,
                     22720735; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative acyl-CoA dehydrogenase"
                     /protein_id="NP_388333.1"
                     /db_xref="EnsemblGenomes-Gn:BSU04520"
                     /db_xref="EnsemblGenomes-Tr:CAB12259"
                     /db_xref="GOA:P96608"
                     /db_xref="InterPro:IPR006091"
                     /db_xref="InterPro:IPR009100"
                     /db_xref="InterPro:IPR013107"
                     /db_xref="InterPro:IPR013786"
                     /db_xref="InterPro:IPR036250"
                     /db_xref="InterPro:IPR037069"
                     /db_xref="SubtiList:BG12080"
                     /db_xref="UniProtKB/Swiss-Prot:P96608"
                     /translation="MSLFIQNDQQRQWMEKIGRIADEFQQTAAEDDEQGRFPAEKIQK
                     LRDAGYTALTLPASHGGGGISVYDMLLFQERLARGDAPTALSIGWHLSVIGELGEGNS
                     WDEDVFAFVAKEVQNGAVINRAATEAKTGSPTRGGRPGTHAVKKDGKWAVNGRKTFTT
                     MSQALDYFLVTAWIEDKQTTGVFLIHKDDPGLSIEETWDMMAMRATGSHDLVLNEVML
                     DENKLVELLQGPRGAKPNGWLLHIPAIYLGVAQAARDYAVQFASEYSPNSLNGPIKNV
                     PAVQQRTGEMELELLNARHFLFHIAQLYDDPVRRPHLTSELGAAKHIVTNAALSVVDK
                     AMRIVGAKSLERTNPLQRYYRDVRAGLHNPPMDDAVIHKLAAEAFES*"
                     /label="ydbM CDS"
     gene            486719..487864
                     /gene="ydbM"
                     /locus_tag="BSU_04520"
                     /old_locus_tag="BSU04520"
                     /label="ydbM gene"
     downshifts      487846
                     /Source="Nicolas_upshifts"
                     /id="D215"
                     /incds=0
                     /nref=13
                     /ntot=123
                     /MaxReadThrough="2.90782"
                     /MaxDrop="4.20573"
                     /score="9.48525091"
                     /energy="-7"
                     /TU="NA"
                     /idTUdmin="U353"
                     /TUdmin="-7"
                     /isTUend="TRUE"
                     /label="downshifts"
     CDS             complement(487889..488068)
                     /gene="fbpB"
                     /locus_tag="BSU_04530"
                     /old_locus_tag="BSU04530"
                     /experiment="publication(s) with functional evidences,
                     PMID:12354229, 16428414, 18697947, 22427629"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 12354229, 16428414,
                     18697947, 22427629; Product type r: regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="regulator of iron homeostasis"
                     /protein_id="NP_388334.1"
                     /db_xref="EnsemblGenomes-Gn:BSU04530"
                     /db_xref="EnsemblGenomes-Tr:CAB12260"
                     /db_xref="GOA:P96609"
                     /db_xref="InterPro:IPR025004"
                     /db_xref="SubtiList:BG12081"
                     /db_xref="UniProtKB/Swiss-Prot:P96609"
                     /translation="MNTNMSGGRRSMPKRKVKTYQQLIQENKEAIMGNPKLMNVIYDR
                     IDRKHQKNLQEQNNT*"
                     /label="fbpB CDS"
     gene            complement(487889..488068)
                     /gene="fbpB"
                     /locus_tag="BSU_04530"
                     /old_locus_tag="BSU04530"
                     /label="fbpB gene"
     downshifts      complement(487907)
                     /Source="Nicolas_upshifts"
                     /id="D216"
                     /incds=0
                     /nref=158
                     /ntot=207
                     /MaxReadThrough="2.35872"
                     /MaxDrop="6.38199"
                     /score="26.3317207"
                     /energy="-7"
                     /TU="NA"
                     /idTUdmin="U355"
                     /TUdmin=0
                     /isTUend="TRUE"
                     /label="downshifts"
     CDS             complement(488022..488186)
                     /gene="fbpA"
                     /locus_tag="BSU_04536"
                     /old_locus_tag="BSU04536"
                     /function="16.3: Control"
                     /experiment="publication(s) with functional evidences,
                     PMID:18697947"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 18697947; Product type r:
                     regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="regulator of iron homeostasis"
                     /protein_id="YP_009513944.1"
                     /db_xref="EnsemblGenomes-Gn:BSU04536"
                     /db_xref="EnsemblGenomes-Tr:CCQ48594"
                     /db_xref="InterPro:IPR025072"
                     /db_xref="UniProtKB/TrEMBL:L8ECQ9"
                     /translation="MTPQSAEIRKKQLIHLLIQNGIYKKSKRHLYELSLTELESEYKH
                     VRRAPEHAEA*"
                     /label="fbpA CDS"
     gene            complement(488022..488186)
                     /gene="fbpA"
                     /locus_tag="BSU_04536"
                     /old_locus_tag="BSU04536"
                     /label="fbpA gene"
     S_feature       complement(488069..488237)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_506502_506670_c"
                     /HighExp="B60, nit, B36, Lbexp, GM 15, GM 10, dia0, S2, GM
                     25, BI"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="0.99141199999999996"
                     /TUshortSig="SigA"
                     /TUshortPSig=1
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S153"
     promotor_-10    complement(488229..488248)
                     /Source="Nicolas_upshift_promotors"
                     /id="U355"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.93906093906094"
                     /psig=1
                     /xcortree=2111
                     /SigmaFactorBS="taaattggccaagaataggactcttttcaTCTTTACAggcta
                     ttgcggacaTTGTATACTGAAGTTAATTGataatgattatcaatatcgtttgattgga
                     g"
                     /listShort="S153, ydbN"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(488239)
                     /Source="Nicolas_upshifts"
                     /id="U355"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.93906093906094"
                     /psig=1
                     /xcortree=2111
                     /SigmaFactorBS="taaattggccaagaataggactcttttcaTCTTTACAggcta
                     ttgcggacaTTGTATACTGAAGTTAATTGataatgattatcaatatcgtttgattgga
                     g"
                     /listShort="S153, ydbN"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(488263..488270)
                     /Source="Nicolas_upshift_promotors"
                     /id="U355"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.93906093906094"
                     /psig=1
                     /xcortree=2111
                     /SigmaFactorBS="taaattggccaagaataggactcttttcaTCTTTACAggcta
                     ttgcggacaTTGTATACTGAAGTTAATTGataatgattatcaatatcgtttgattgga
                     g"
                     /listShort="S153, ydbN"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-35    488378..488383
                     /Source="Nicolas_upshift_promotors"
                     /id="U356"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.933066933066933"
                     /psig="0.933066933066933"
                     /xcortree=1191
                     /SigmaFactorBS="tgctgtcgaaatattccgcttcattgaacgcacccTGCTATt
                     tttcatgttttgaaCCATACTATGTAATAGAATggaggctggtattcaatggagcgga
                     c"
                     /listShort="ydbO"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    488399..488417
                     /Source="Nicolas_upshift_promotors"
                     /id="U356"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.933066933066933"
                     /psig="0.933066933066933"
                     /xcortree=1191
                     /SigmaFactorBS="tgctgtcgaaatattccgcttcattgaacgcacccTGCTATt
                     tttcatgttttgaaCCATACTATGTAATAGAATggaggctggtattcaatggagcgga
                     c"
                     /listShort="ydbO"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        488403
                     /Source="Nicolas_upshifts"
                     /id="U356"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.933066933066933"
                     /psig="0.933066933066933"
                     /xcortree=1191
                     /SigmaFactorBS="tgctgtcgaaatattccgcttcattgaacgcacccTGCTATt
                     tttcatgttttgaaCCATACTATGTAATAGAATggaggctggtattcaatggagcgga
                     c"
                     /listShort="ydbO"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             488433..489305
                     /gene="ydbO"
                     /locus_tag="BSU_04540"
                     /old_locus_tag="BSU04540"
                     /function="16.8: Protect"
                     /function="16.1: Circulate"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="putative cation efflux system"
                     /protein_id="NP_388335.1"
                     /db_xref="EnsemblGenomes-Gn:BSU04540"
                     /db_xref="EnsemblGenomes-Tr:CAB12261"
                     /db_xref="GOA:P96610"
                     /db_xref="InterPro:IPR002524"
                     /db_xref="InterPro:IPR027469"
                     /db_xref="InterPro:IPR027470"
                     /db_xref="InterPro:IPR036837"
                     /db_xref="SubtiList:BG12082"
                     /db_xref="UniProtKB/Swiss-Prot:P96610"
                     /translation="MERTENLKKGEKGALLNIFAYVILAVVKLVIGILYHSEALRADG
                     LNNGTDIVASVAVLIGLRISQRPADSDHPYGHYRAETISSLVASFIMMAVGIEVLIGG
                     GKAIAGGTTETPNLIAAWTALGSAVFMYGIYLYNKRLAASIKSSALMAAAKDSRSDAF
                     VSAGAFIGVFSSQLKLPWVDPVTAFIIGIIICKTAWDIFKDASHSLTDGFHLKDLEPY
                     KQTVGRIENVHRLKDVKARYLGSTVHIEMVITVDPKLTVEEGHGVADEVEDKIKHEHD
                     VTHVHVHVEPDDIK*"
                     /label="ydbO CDS"
     gene            488433..489305
                     /gene="ydbO"
                     /locus_tag="BSU_04540"
                     /old_locus_tag="BSU04540"
                     /label="ydbO gene"
     promotor_-35    488669..488678
                     /Source="Nicolas_upshift_promotors"
                     /id="U357"
                     /multdbtbs="-"
                     /comp="M9"
                     /sig="SigWXY"
                     /pcomp="0.999000999001"
                     /psig="0.999000999001"
                     /xcortree=1650
                     /SigmaFactorBS="gctgacagcgatcatccatacggccattatcgggcTGAAACA
                     ATTtcgtctcttgttGCGTCTTTTATTATGAtggcagtcggcattgaagtgttaatcg
                     g"
                     /listShort="S155, S156, ddl, murF, S157, S158, cshA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    488691..488706
                     /Source="Nicolas_upshift_promotors"
                     /id="U357"
                     /multdbtbs="-"
                     /comp="M9"
                     /sig="SigWXY"
                     /pcomp="0.999000999001"
                     /psig="0.999000999001"
                     /xcortree=1650
                     /SigmaFactorBS="gctgacagcgatcatccatacggccattatcgggcTGAAACA
                     ATTtcgtctcttgttGCGTCTTTTATTATGAtggcagtcggcattgaagtgttaatcg
                     g"
                     /listShort="S155, S156, ddl, murF, S157, S158, cshA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        488694
                     /Source="Nicolas_upshifts"
                     /id="U357"
                     /multdbtbs="-"
                     /comp="M9"
                     /sig="SigWXY"
                     /pcomp="0.999000999001"
                     /psig="0.999000999001"
                     /xcortree=1650
                     /SigmaFactorBS="gctgacagcgatcatccatacggccattatcgggcTGAAACA
                     ATTtcgtctcttgttGCGTCTTTTATTATGAtggcagtcggcattgaagtgttaatcg
                     g"
                     /listShort="S155, S156, ddl, murF, S157, S158, cshA"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     S_feature       complement(489250..489319)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_507683_507752_c"
                     /HighExp="LPhT, dia15, dia5, Diami, Etha, Lbtran, LBGtran,
                     LBGstat, Mt0, M0t45"
                     /AntisenseName="ydbO"
                     /AntisenseCor="0.18463882527998399"
                     /AntisenseRegPval="-2.6"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig=1
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S154"
     downshifts      complement(489293)
                     /Source="Nicolas_upshifts"
                     /id="D217"
                     /incds=0
                     /nref=145
                     /ntot=242
                     /MaxReadThrough="3.07579"
                     /MaxDrop="6.00116"
                     /score="9.69023537"
                     /energy="-12.3"
                     /TU="U359"
                     /idTUdmin="U359"
                     /TUdmin="-198"
                     /isTUend="FALSE"
                     /label="downshifts"
     S_feature       489306..489655
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_507739_508088"
                     /HighExp="Salt, Paraq, G135, ferm, Oxctl, T-0.40H, G150,
                     Lbexp, T3.0H, T2.30H"
                     /AntisenseName="ydbP"
                     /AntisenseCor="-0.27800721625230801"
                     /AntisenseRegPval="-5.4"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigWXY"
                     /TUshortPSig="0.999"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S155"
     CDS             complement(489320..489640)
                     /gene="ydbP"
                     /locus_tag="BSU_04550"
                     /old_locus_tag="BSU04550"
                     /function="16.8: Protect"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 10482513; Product type
                     e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative thioredoxin or thiol-disulfide
                     isomerase"
                     /protein_id="NP_388336.1"
                     /db_xref="EnsemblGenomes-Gn:BSU04550"
                     /db_xref="EnsemblGenomes-Tr:CAB12262"
                     /db_xref="GOA:P96611"
                     /db_xref="InterPro:IPR005746"
                     /db_xref="InterPro:IPR013766"
                     /db_xref="InterPro:IPR036249"
                     /db_xref="SubtiList:BG12083"
                     /db_xref="UniProtKB/Swiss-Prot:P96611"
                     /translation="MKKITTNEQFNELIQSDKEIIVKFYADWCPDCTRMNMFIGDILE
                     EYNQNDWYELNKDELPDLAEKYQVMGIPSLLIFKNGEKTAHLHSANAKTPEEVTEFLS
                     EHIS*"
                     /label="ydbP CDS"
     gene            complement(489320..489640)
                     /gene="ydbP"
                     /locus_tag="BSU_04550"
                     /old_locus_tag="BSU04550"
                     /label="ydbP gene"
     promotor_-35    489636..489640
                     /Source="Nicolas_upshift_promotors"
                     /id="U358"
                     /multdbtbs="-"
                     /comp="M15"
                     /sig="Sig-"
                     /pcomp="0.65034965034965"
                     /psig="0.298701298701299"
                     /xcortree=1554
                     /SigmaFactorBS="tgaatcagttcattaaattgttcgtttgttgtgatttttTTC
                     ATatgtcacaTCTCCTTTTCAATGCcattttaatataaaataaaaaggaattacatac
                     a"
                     /listShort="S156, ddl, murF, S157, S158, cshA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    489649..489663
                     /Source="Nicolas_upshift_promotors"
                     /id="U358"
                     /multdbtbs="-"
                     /comp="M15"
                     /sig="Sig-"
                     /pcomp="0.65034965034965"
                     /psig="0.298701298701299"
                     /xcortree=1554
                     /SigmaFactorBS="tgaatcagttcattaaattgttcgtttgttgtgatttttTTC
                     ATatgtcacaTCTCCTTTTCAATGCcattttaatataaaataaaaaggaattacatac
                     a"
                     /listShort="S156, ddl, murF, S157, S158, cshA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     S_feature       489657..489814
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_508090_508247"
                     /HighExp="Lbexp, dia0, LBGexp, H2O2, Paraq, Oxctl, G180,
                     Salt, M0t45, Mt0"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="Sig-, SigWXY"
                     /TUshortPSig="0.299, 0.999"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S156"
     upshifts        489657
                     /Source="Nicolas_upshifts"
                     /id="U358"
                     /multdbtbs="-"
                     /comp="M15"
                     /sig="Sig-"
                     /pcomp="0.65034965034965"
                     /psig="0.298701298701299"
                     /xcortree=1554
                     /SigmaFactorBS="tgaatcagttcattaaattgttcgtttgttgtgatttttTTC
                     ATatgtcacaTCTCCTTTTCAATGCcattttaatataaaataaaaaggaattacatac
                     a"
                     /listShort="S156, ddl, murF, S157, S158, cshA"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-10    complement(489661..489680)
                     /Source="Nicolas_upshift_promotors"
                     /id="U359"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.98001998001998"
                     /psig=1
                     /xcortree=2021
                     /SigmaFactorBS="gatctaattatttttgggcatgctgatgttgaatgCATTTGT
                     AtgtaattccttttTATTTTATATTAAAATGGCAttgaaaaggagatgtgacatatga
                     a"
                     /listShort="ydbP, S154"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(489676)
                     /Source="Nicolas_upshifts"
                     /id="U359"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.98001998001998"
                     /psig=1
                     /xcortree=2021
                     /SigmaFactorBS="gatctaattatttttgggcatgctgatgttgaatgCATTTGT
                     AtgtaattccttttTATTTTATATTAAAATGGCAttgaaaaggagatgtgacatatga
                     a"
                     /listShort="ydbP, S154"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(489694..489701)
                     /Source="Nicolas_upshift_promotors"
                     /id="U359"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.98001998001998"
                     /psig=1
                     /xcortree=2021
                     /SigmaFactorBS="gatctaattatttttgggcatgctgatgttgaatgCATTTGT
                     AtgtaattccttttTATTTTATATTAAAATGGCAttgaaaaggagatgtgacatatga
                     a"
                     /listShort="ydbP, S154"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             489815..490879
                     /gene="ddlA"
                     /locus_tag="BSU_04560"
                     /old_locus_tag="BSU04560"
                     /EC_number="6.3.2.4"
                     /function="16.13: Shape"
                     /function="16.2: Construct biomass (Anabolism)"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 2a: Function from experimental evidences
                     in other organisms; PubMedId: 8662022, 12682299, 22407814;
                     Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="D-alanyl-D-alanine ligase A"
                     /protein_id="NP_388337.1"
                     /db_xref="EnsemblGenomes-Gn:BSU04560"
                     /db_xref="EnsemblGenomes-Tr:CAB12263"
                     /db_xref="GOA:P96612"
                     /db_xref="InterPro:IPR000291"
                     /db_xref="InterPro:IPR005905"
                     /db_xref="InterPro:IPR011095"
                     /db_xref="InterPro:IPR011127"
                     /db_xref="InterPro:IPR011761"
                     /db_xref="InterPro:IPR013815"
                     /db_xref="InterPro:IPR016185"
                     /db_xref="SubtiList:BG11932"
                     /db_xref="UniProtKB/Swiss-Prot:P96612"
                     /translation="MYGGKSAEHNVSLQTALAVIKALNTEKFDIHPIYITEKGEWVRG
                     ARLTEPVSNVKMLQFEQGGSAFSPAALNQEMFPQEASQQNEAIDVVFPLLHGPNGEDG
                     TIQGMLELLNIPYVGNGVLASSAGMDKVVMKHLFAQVGLAQAKYAAFLKKDWTRSPKE
                     SCEEVEQELGYPCFVKPANLGSSVGISKCRNREELQKAFELAFQYDRKVVVEEGINGR
                     EIEIGVLGNDDPKCSVVGEIAPKTDFYDYKAKYEDGDTDLMIPAIVTDEEYATISDMA
                     IKAFKAIDGSGLVRADFFLTADGEVLINEVNTMPGFTPFSMFPLLWKEAGVEYADLIE
                     QLVELAKERHAEKQLIKHTF*"
                     /label="ddlA CDS"
     gene            489815..490879
                     /gene="ddlA"
                     /locus_tag="BSU_04560"
                     /old_locus_tag="BSU04560"
                     /label="ddlA gene"
     downshifts      490867
                     /Source="Nicolas_upshifts"
                     /id="D218"
                     /incds=0
                     /nref=1
                     /ntot=59
                     /MaxReadThrough="5.68418"
                     /MaxDrop="2.53103"
                     /score="3.92144467"
                     /energy="-9.6"
                     /TU="U357,U358"
                     /idTUdmin="U356"
                     /TUdmin=2310
                     /isTUend="FALSE"
                     /label="downshifts"
     CDS             490951..492324
                     /gene="murF"
                     /locus_tag="BSU_04570"
                     /old_locus_tag="BSU04570"
                     /EC_number="6.3.2.10"
                     /function="16.13: Shape"
                     /function="16.2: Construct biomass (Anabolism)"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 2a: Function from experimental evidences
                     in other organisms; PubMedId: 12682299, 17714441; Product
                     type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
                     6-diaminopimelate-D-alanyl-D-alanine ligase"
                     /protein_id="NP_388338.1"
                     /db_xref="EnsemblGenomes-Gn:BSU04570"
                     /db_xref="EnsemblGenomes-Tr:CAB12264"
                     /db_xref="GOA:P96613"
                     /db_xref="InterPro:IPR000713"
                     /db_xref="InterPro:IPR004101"
                     /db_xref="InterPro:IPR005863"
                     /db_xref="InterPro:IPR013221"
                     /db_xref="InterPro:IPR035911"
                     /db_xref="InterPro:IPR036565"
                     /db_xref="InterPro:IPR036615"
                     /db_xref="SubtiList:BG12084"
                     /db_xref="UniProtKB/Swiss-Prot:P96613"
                     /translation="MIKRTVKNIAEMVKGTLANPQYEQTVIHGVATDTRKLEQHQLFI
                     PLKGERFDGHSFVEQAFEAGVAAVLWDRSVPNPPENHAVILVDDTLTALQQLAKAYLQ
                     ELGTRVIGVTGSNGKTTTKDMIHAVLGTQYRVHKTGGNFNNHIGLPLTVLAMPENTEI
                     AVLEMGMSAKGEIDLLSRLANPDAAVITNIGESHMQDLGSREGIAEAKLEIINGLKED
                     GVLIYIGDEPLLQNAYSCQTKTYGTGTHNDYQLQDVSQSEEGTHFTIKGIENTFFIPI
                     LGKHNVMNAMAAIAAGAYFGIAPEDAAKGLSGLKVTGMRLELIKTDSGLSIINDAYNA
                     SPTSMKAAIQLTESLEGYGKKMLVLGDMLELGDLEETFHKECGAVISPDKIDRVFTYG
                     KLGAFIAEGALKHFEKDRVSHYTEKKDLLQAVKENASKGDLILFKASRGMKLEEIVKD
                     LIESPLS*"
                     /label="murF CDS"
     gene            490951..492324
                     /gene="murF"
                     /locus_tag="BSU_04570"
                     /old_locus_tag="BSU04570"
                     /label="murF gene"
     promotor_-35    492355..492361
                     /Source="Nicolas_upshift_promotors"
                     /id="U360"
                     /multdbtbs="-"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp=1
                     /psig=1
                     /xcortree=849
                     /SigmaFactorBS="gaaaatattttgcgaaaaaacgcatattgcATCATAAaataa
                     cctgatatGCAAACACTAATgtatgccggccgaaaattatgtatatctggccggctgc
                     g"
                     /listShort="S157, S158, cshA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    492375..492386
                     /Source="Nicolas_upshift_promotors"
                     /id="U360"
                     /multdbtbs="-"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp=1
                     /psig=1
                     /xcortree=849
                     /SigmaFactorBS="gaaaatattttgcgaaaaaacgcatattgcATCATAAaataa
                     cctgatatGCAAACACTAATgtatgccggccgaaaattatgtatatctggccggctgc
                     g"
                     /listShort="S157, S158, cshA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        492385
                     /Source="Nicolas_upshifts"
                     /id="U360"
                     /multdbtbs="-"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp=1
                     /psig=1
                     /xcortree=849
                     /SigmaFactorBS="gaaaatattttgcgaaaaaacgcatattgcATCATAAaataa
                     cctgatatGCAAACACTAATgtatgccggccgaaaattatgtatatctggccggctgc
                     g"
                     /listShort="S157, S158, cshA"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     misc_feature    492428..492447
                     /Source="Nicolas_upshift_promotors"
                     /id="U361"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.958041958041958"
                     /psig=1
                     /xcortree=2138
                     /SigmaFactorBS="tgatatgcaaacactaatgtatgccggccgaaaattatgtat
                     atctggccggctgcggcTATGATACAATATATATAGGttatttcgcgatacgaacata
                     t"
                     /listShort="S157, S158, cshA"
                     /GFF_Attribute="listLong"
                     /label="promotor_single_box"
                     /note="Geneious type: promotor_single_box"
     S_feature       492429..492603
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_510862_511036"
                     /HighExp="Cold, ferm, nit, G135, S5, LBGexp, G150, S8, S7,
                     BI"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="0.76694499999999999"
                     /TUshortSig="SigA, SigGF, Sig-, SigWXY"
                     /TUshortPSig="1, 1, 0.299, 0.999"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S157"
     upshifts        492429
                     /Source="Nicolas_upshifts"
                     /id="U361"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.958041958041958"
                     /psig=1
                     /xcortree=2138
                     /SigmaFactorBS="tgatatgcaaacactaatgtatgccggccgaaaattatgtat
                     atctggccggctgcggcTATGATACAATATATATAGGttatttcgcgatacgaacata
                     t"
                     /listShort="S157, S158, cshA"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    492571..492578
                     /Source="Nicolas_upshift_promotors"
                     /id="U362"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.586413586413586"
                     /psig=1
                     /xcortree=1884
                     /SigmaFactorBS="tcgagatgccgatctgcttctcatctTATTGAAAaacaaata
                     gtgtaaTGGTAAGATAAAACTTAAAGtaattcgggctttgtatacggatggatcctgt
                     c"
                     /listShort="S158, cshA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    492593..492612
                     /Source="Nicolas_upshift_promotors"
                     /id="U362"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.586413586413586"
                     /psig=1
                     /xcortree=1884
                     /SigmaFactorBS="tcgagatgccgatctgcttctcatctTATTGAAAaacaaata
                     gtgtaaTGGTAAGATAAAACTTAAAGtaattcgggctttgtatacggatggatcctgt
                     c"
                     /listShort="S158, cshA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     S_feature       492605..492672
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_511038_511105"
                     /HighExp="Cold, G150, T-3.40H, HPh, Salt, LPh, G180, G135,
                     Oxctl, T-5.40H"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA, SigA, SigGF, Sig-, SigWXY"
                     /TUshortPSig="1, 1, 1, 0.299, 0.999"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S158"
     upshifts        492605
                     /Source="Nicolas_upshifts"
                     /id="U362"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.586413586413586"
                     /psig=1
                     /xcortree=1884
                     /SigmaFactorBS="tcgagatgccgatctgcttctcatctTATTGAAAaacaaata
                     gtgtaaTGGTAAGATAAAACTTAAAGtaattcgggctttgtatacggatggatcctgt
                     c"
                     /listShort="S158, cshA"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             492724..494208
                     /gene="cshA"
                     /locus_tag="BSU_04580"
                     /old_locus_tag="BSU04580"
                     /EC_number="3.6.1.-"
                     /function="16.6: Maintain"
                     /experiment="publication(s) with functional evidences,
                     PMID:16352840, 27965645"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 16352840, 27965645;
                     Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent RNA helicase; cold shock"
                     /protein_id="NP_388339.2"
                     /db_xref="EnsemblGenomes-Gn:BSU04580"
                     /db_xref="EnsemblGenomes-Tr:CAB12265"
                     /db_xref="GOA:P96614"
                     /db_xref="InterPro:IPR000629"
                     /db_xref="InterPro:IPR001650"
                     /db_xref="InterPro:IPR011545"
                     /db_xref="InterPro:IPR014001"
                     /db_xref="InterPro:IPR014014"
                     /db_xref="InterPro:IPR027417"
                     /db_xref="InterPro:IPR030880"
                     /db_xref="SubtiList:BG12085"
                     /db_xref="UniProtKB/Swiss-Prot:P96614"
                     /translation="MTITFQDFNLSSDLMKAINRMGFEEATPIQAQTIPLGLSNKDVI
                     GQAQTGTGKTAAFGIPLVEKINPESPNIQAIVIAPTRELAIQVSEELYKIGQDKRAKV
                     LPIYGGQDIGRQIRALKKNPNIIVGTPGRLLDHINRRTIRLNNVNTVVMDEADEMLNM
                     GFIDDIESILSNVPSEHQTLLFSATMPAPIKRIAERFMTEPEHVKVKAKEMTVSNIQQ
                     FYLEVQERKKFDTLTRLLDIQSPELAIVFGRTKRRVDELAEALNLRGYAAEGIHGDLT
                     QAKRMVALRKFKEGAIEVLVATDVAARGLDISGVTHVYNFDVPQDPESYVHRIGRTGR
                     AGKTGMAMTFITPREKSMLRAIEQTTKRKMDRMKEPTLDEALEGQQQVTVERLRTTIS
                     ENNLNFYMTAAAELLEDHDAVTVVAAAIKMATKEPDDTPVRLTDEAPMVSKRYKNQRS
                     SKRRDGQGGGYRGGKGKSNNRSSYDKKRSNDRRSSGDRRQKKSY*"
                     /label="cshA CDS"
     gene            492724..494208
                     /gene="cshA"
                     /locus_tag="BSU_04580"
                     /old_locus_tag="BSU04580"
                     /label="cshA gene"
     downshifts      494201
                     /Source="Nicolas_upshifts"
                     /id="D219"
                     /incds=0
                     /nref=309
                     /ntot=313
                     /MaxReadThrough="1.91428"
                     /MaxDrop="8.13079"
                     /score="26.104757"
                     /energy="-13.1"
                     /TU="NA"
                     /idTUdmin="U358"
                     /TUdmin="-10"
                     /isTUend="TRUE"
                     /label="downshifts"
     S_feature       494321..494380
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_512754_512813"
                     /HighExp="Etha, LBGexp, G180, Cold, Lbtran, dia0, G150,
                     BMM, UNK1, MG-0.1"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigWXY"
                     /TUshortPSig=1
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S159"
     promotor_-35    494321..494330
                     /Source="Nicolas_upshift_promotors"
                     /id="U363"
                     /multdbtbs="SigW"
                     /comp="M9"
                     /sig="SigWXY"
                     /pcomp=1
                     /psig=1
                     /xcortree=1673
                     /SigmaFactorBS="tttgttattcagcaaactttcagctgacggaagccatttttc
                     tctgtatgcttaagaaTGAAACCTTTctgtaaaagagACGTATAAATAACGACgaaaa
                     a"
                     /listShort="S159, ydbS, ydbT, S160, S161, acpS, S162,
                     ydcC"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     upshifts        494323
                     /Source="Nicolas_upshifts"
                     /id="U363"
                     /multdbtbs="SigW"
                     /comp="M9"
                     /sig="SigWXY"
                     /pcomp=1
                     /psig=1
                     /xcortree=1673
                     /SigmaFactorBS="tttgttattcagcaaactttcagctgacggaagccatttttc
                     tctgtatgcttaagaaTGAAACCTTTctgtaaaagagACGTATAAATAACGACgaaaa
                     a"
                     /listShort="S159, ydbS, ydbT, S160, S161, acpS, S162,
                     ydcC"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-10    494342..494357
                     /Source="Nicolas_upshift_promotors"
                     /id="U363"
                     /multdbtbs="SigW"
                     /comp="M9"
                     /sig="SigWXY"
                     /pcomp=1
                     /psig=1
                     /xcortree=1673
                     /SigmaFactorBS="tttgttattcagcaaactttcagctgacggaagccatttttc
                     tctgtatgcttaagaaTGAAACCTTTctgtaaaagagACGTATAAATAACGACgaaaa
                     a"
                     /listShort="S159, ydbS, ydbT, S160, S161, acpS, S162,
                     ydcC"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     CDS             494381..494860
                     /gene="ydbS"
                     /locus_tag="BSU_04590"
                     /old_locus_tag="BSU04590"
                     /function="16.8: Protect"
                     /experiment="publication(s) with functional evidences,
                     PMID:16629676"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 16629676; Product type
                     ph: phenotype"
                     /codon_start=1
                     /transl_table=11
                     /product="resistance to heterologous antibiotics"
                     /protein_id="NP_388340.1"
                     /db_xref="EnsemblGenomes-Gn:BSU04590"
                     /db_xref="EnsemblGenomes-Tr:CAB12266"
                     /db_xref="GOA:P96615"
                     /db_xref="InterPro:IPR005182"
                     /db_xref="SubtiList:BG12086"
                     /db_xref="UniProtKB/Swiss-Prot:P96615"
                     /translation="MREQPKNQISPDGLKVWRLQEIIISAVCLLIVIAVAVLSYYFHW
                     PYWISGVLGAVWLLGSIVTVFIIPKVRHKVWRYEVHEHEIDIQSGIFVVTRVIVPMVR
                     VQHVDTSQGPLLKKYNLATVKISTAATVHSIPALEMEEADRLRDSISRLARVTDDDV*
                     "
                     /label="ydbS CDS"
     gene            494381..494860
                     /gene="ydbS"
                     /locus_tag="BSU_04590"
                     /old_locus_tag="BSU04590"
                     /label="ydbS gene"
     CDS             494850..496331
                     /gene="ydbT"
                     /locus_tag="BSU_04600"
                     /old_locus_tag="BSU04600"
                     /experiment="publication(s) with functional evidences,
                     PMID:16629676"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 16629676; Product type
                     ph: phenotype"
                     /codon_start=1
                     /transl_table=11
                     /product="resistance to heterologous antibiotics"
                     /protein_id="NP_388341.1"
                     /db_xref="EnsemblGenomes-Gn:BSU04600"
                     /db_xref="EnsemblGenomes-Tr:CAB12267"
                     /db_xref="GOA:P96616"
                     /db_xref="InterPro:IPR005182"
                     /db_xref="InterPro:IPR014529"
                     /db_xref="SubtiList:BG12087"
                     /db_xref="UniProtKB/Swiss-Prot:P96616"
                     /translation="MMSEPKRLHPVAVILNLCHTIIQTIKNIILPFFFVYIVNSNHTV
                     RFYGAIALGVLFIWLVAASIIKWRRFTYRIEDDEFRIEEGLFVTKKRYISIDRIQTMN
                     TSAGLVQQIFKLVKLQIETAGGGKEAEAVLSAISVEEAERIKEAVFKKKAQRRENELD
                     EERLEAEEELDPSVEVQEHYRMNAKELLMAASTSGGIGVIISAVFALISQLDEVLPMD
                     WLFDKFSFLQHASIGIYAVLIFIGLFIAWIFSIAGMMFRYANFQIIKKEQELVISRGI
                     IEKHQVTIPLRKIQAIKIKENIIRQLFGFVTVSIVSAGGGDREKEEGALTILFPMIHK
                     KKLPHMLRTFTPEYTLEENCRRLPRRALKRYLFRSVIFSLFLIIPLCIFFQPWGYLSV
                     ILLPIELLFGYLAYKEAAWTINGDRLQLTSRFIGRTTAIVLKKRMQVCKFSQSYFQKK
                     GRLYTISTSVKSSSHMEELTVRDVGEEDAAFILKWYSYEKADG*"
                     /label="ydbT CDS"
     gene            494850..496331
                     /gene="ydbT"
                     /locus_tag="BSU_04600"
                     /old_locus_tag="BSU04600"
                     /label="ydbT gene"
     downshifts      496301
                     /Source="Nicolas_upshifts"
                     /id="D220"
                     /incds=0
                     /nref=6
                     /ntot=162
                     /MaxReadThrough="4.90913"
                     /MaxDrop="3.0931"
                     /score="48.2239319"
                     /energy="-17.1"
                     /TU="U363"
                     /idTUdmin="U364"
                     /TUdmin="-638"
                     /isTUend="FALSE"
                     /label="downshifts"
     S_feature       496346..496673
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_514779_515106"
                     /HighExp="Salt, T0.30H, G135, T1.0H, T1.30H, G150, G180,
                     Oxctl, T-0.40H, aero"
                     /AntisenseName="ydcA"
                     /AntisenseCor="-0.25636523135066602"
                     /AntisenseRegPval="-4.7"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigWXY"
                     /TUshortPSig=1
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S160"
     downshifts      complement(496355)
                     /Source="Nicolas_upshifts"
                     /id="D221"
                     /incds=0
                     /nref=1
                     /ntot=66
                     /MaxReadThrough="0.258529999999999"
                     /MaxDrop="3.15455"
                     /score="-3.74867023"
                     /energy="-8.8"
                     /TU="NA"
                     /idTUdmin="U365"
                     /TUdmin=220
                     /isTUend="FALSE"
                     /label="downshifts"
     CDS             complement(496583..497182)
                     /gene="ydcA"
                     /locus_tag="BSU_04610"
                     /old_locus_tag="BSU04610"
                     /EC_number="3.4.21.-"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 15616571, 15849754,
                     16850406; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative rhomboid protease"
                     /protein_id="NP_388342.1"
                     /db_xref="EnsemblGenomes-Gn:BSU04610"
                     /db_xref="EnsemblGenomes-Tr:CAB12268"
                     /db_xref="GOA:P96617"
                     /db_xref="InterPro:IPR022764"
                     /db_xref="InterPro:IPR035952"
                     /db_xref="SubtiList:BG12088"
                     /db_xref="UniProtKB/Swiss-Prot:P96617"
                     /translation="MFIRTENFQTFIRLYPVVTFILALQAVLWLFFSLPAHSVVLWRD
                     TVTGYNLGVANGEWWRLITPILLHAGFTHLLFNSMSIFLFAPALERMLGKARFLLVYA
                     GSGIIGNIGTYVTEPLDYVHVGASGAIFGLFGVYLFMVLFRNELIGQEHSKMIITLLA
                     FAVLMSFINSNINMMAHLFGLCGGFLLSFLCVQKKERRY*"
                     /label="ydcA CDS"
     gene            complement(496583..497182)
                     /gene="ydcA"
                     /locus_tag="BSU_04610"
                     /old_locus_tag="BSU04610"
                     /label="ydcA gene"
     promotor_-35    496643..496648
                     /Source="Nicolas_upshift_promotors"
                     /id="U364"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.988011988011988"
                     /psig=1
                     /xcortree=2751
                     /SigmaFactorBS="aaaacgaaagaagaaacccgccgcatagTCCAAAcaaatggg
                     ccatCATGTTAATATTGGAGTTGAtaaacgacatgagaacggcaaatgcgagcagtgt
                     g"
                     /listShort="S161"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    496661..496680
                     /Source="Nicolas_upshift_promotors"
                     /id="U364"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.988011988011988"
                     /psig=1
                     /xcortree=2751
                     /SigmaFactorBS="aaaacgaaagaagaaacccgccgcatagTCCAAAcaaatggg
                     ccatCATGTTAATATTGGAGTTGAtaaacgacatgagaacggcaaatgcgagcagtgt
                     g"
                     /listShort="S161"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     S_feature       496675..497276
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_515108_515709"
                     /HighExp="Salt, G135, G150, T0.30H, G180, T1.0H, T1.30H,
                     H2O2, Paraq, Oxctl"
                     /AntisenseName="ydcA"
                     /AntisenseCor="-0.11975373672841701"
                     /AntisenseRegPval="-1.3"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA, SigWXY"
                     /TUshortPSig="1, 1"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S161"
     upshifts        496675
                     /Source="Nicolas_upshifts"
                     /id="U364"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.988011988011988"
                     /psig=1
                     /xcortree=2751
                     /SigmaFactorBS="aaaacgaaagaagaaacccgccgcatagTCCAAAcaaatggg
                     ccatCATGTTAATATTGGAGTTGAtaaacgacatgagaacggcaaatgcgagcagtgt
                     g"
                     /listShort="S161"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     misc_feature    complement(497206..497225)
                     /Source="Nicolas_upshift_promotors"
                     /id="U365"
                     /multdbtbs="SigE"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.879120879120879"
                     /psig="0.907092907092907"
                     /xcortree=1402
                     /SigmaFactorBS="tgtatgataacctcctttgcgtacgtactatttaaatggttt
                     gtctcataaaCGTGTTACTATAGATATACCaaaatgaagaaaaggggctcggaatgtt
                     t"
                     /listShort="ydcA"
                     /GFF_Attribute="listLong"
                     /label="promotor_single_box"
                     /note="Geneious type: promotor_single_box"
     upshifts        complement(497217)
                     /Source="Nicolas_upshifts"
                     /id="U365"
                     /multdbtbs="SigE"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.879120879120879"
                     /psig="0.907092907092907"
                     /xcortree=1402
                     /SigmaFactorBS="tgtatgataacctcctttgcgtacgtactatttaaatggttt
                     gtctcataaaCGTGTTACTATAGATATACCaaaatgaagaaaaggggctcggaatgtt
                     t"
                     /listShort="ydcA"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             497277..497642
                     /gene="acpS"
                     /locus_tag="BSU_04620"
                     /old_locus_tag="BSU04620"
                     /EC_number="2.7.8.7"
                     /function="16.13: Shape"
                     /function="16.2: Construct biomass (Anabolism)"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 1c: Function from experimental evidences
                     in the studied genus; PubMedId: 11489886, 11525165,
                     11867633, 12682299, 12926246, 15955059, 16597923; Product
                     type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="holo-acyl carrier protein synthase
                     (phosphopantetheinyl transferase)"
                     /protein_id="NP_388343.1"
                     /db_xref="EnsemblGenomes-Gn:BSU04620"
                     /db_xref="EnsemblGenomes-Tr:CAB12269"
                     /db_xref="GOA:P96618"
                     /db_xref="InterPro:IPR002582"
                     /db_xref="InterPro:IPR004568"
                     /db_xref="InterPro:IPR008278"
                     /db_xref="InterPro:IPR037143"
                     /db_xref="PDB:1F7L"
                     /db_xref="PDB:1F7T"
                     /db_xref="PDB:1F80"
                     /db_xref="SubtiList:BG12089"
                     /db_xref="UniProtKB/Swiss-Prot:P96618"
                     /translation="MIYGIGLDITELKRIASMAGRQKRFAERILTRSELDQYYELSEK
                     RKNEFLAGRFAAKEAFSKAFGTGIGRQLSFQDIEIRKDQNGKPYIICTKLSQAAVHVS
                     ITHTKEYAAAQVVIERLSS*"
                     /label="acpS CDS"
     gene            497277..497642
                     /gene="acpS"
                     /locus_tag="BSU_04620"
                     /old_locus_tag="BSU04620"
                     /label="acpS gene"
     promotor_-35    497645..497650
                     /Source="Nicolas_upshift_promotors"
                     /id="U366"
                     /multdbtbs="SigE"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp=1
                     /psig=1
                     /xcortree=976
                     /SigmaFactorBS="tgccgcgcaggttgtgattgaaaggttgtcaagctagtcTGC
                     ATAttagggaaaccccacTCATATATTTGATAGTGCAttaagggagacaagttgtttg
                     a"
                     /listShort="S162, ydcC, alrA"
                     /listLong="endB, ndoA"
                     /label="promotor_-35"
     S_feature       497666..497807
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_516099_516240"
                     /HighExp="S3, S4, BT, LoTm, S5, T5.0H, M9-stat, S7, T4.0H,
                     T3.30H"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigEF, SigWXY"
                     /TUshortPSig="1, 1"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S162"
     promotor_-10    497666..497684
                     /Source="Nicolas_upshift_promotors"
                     /id="U366"
                     /multdbtbs="SigE"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp=1
                     /psig=1
                     /xcortree=976
                     /SigmaFactorBS="tgccgcgcaggttgtgattgaaaggttgtcaagctagtcTGC
                     ATAttagggaaaccccacTCATATATTTGATAGTGCAttaagggagacaagttgtttg
                     a"
                     /listShort="S162, ydcC, alrA"
                     /listLong="endB, ndoA"
                     /label="promotor_-10"
     upshifts        497666
                     /Source="Nicolas_upshifts"
                     /id="U366"
                     /multdbtbs="SigE"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp=1
                     /psig=1
                     /xcortree=976
                     /SigmaFactorBS="tgccgcgcaggttgtgattgaaaggttgtcaagctagtcTGC
                     ATAttagggaaaccccacTCATATATTTGATAGTGCAttaagggagacaagttgtttg
                     a"
                     /listShort="S162, ydcC, alrA"
                     /listLong="endB, ndoA"
                     /label="upshifts"
     CDS             497808..498824
                     /gene="ydcC"
                     /locus_tag="BSU_04630"
                     /old_locus_tag="BSU04630"
                     /function="16.5: Explore"
                     /function="16.13: Shape"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 14523133; Product type
                     lp: lipoprotein"
                     /codon_start=1
                     /transl_table=11
                     /product="putative lipoprotein"
                     /protein_id="NP_388344.2"
                     /db_xref="EnsemblGenomes-Gn:BSU04630"
                     /db_xref="EnsemblGenomes-Tr:CAB12270"
                     /db_xref="GOA:P96619"
                     /db_xref="InterPro:IPR029046"
                     /db_xref="SubtiList:BG12090"
                     /db_xref="UniProtKB/Swiss-Prot:P96619"
                     /translation="MKKVRKSFVLLLTGLLAVLILSACGQKTQQDIVAGLDEKAKEYT
                     SYKAKAKMTIETGSEPQVYNVEIWHKKPSLYRVYLENPKKDQNQVILRNENGVFVLTP
                     SLNKSFRFQSDWPNNSSQVYLFESLVKDVQNDSDAVFTAKEKKYVFETKTNYQHNKML
                     PTQEITFNKKDMSPSSVKVMDTDRKVMVKVEFSSFEFNKQFDKESFDEKKNMTLSQMD
                     VATSAKPSDTFAVKTPLELPLGVKLLEEKDISTEDGKRIIMTYGGEKSFTLIQEKAQI
                     AKASSSVTLNGEPVNLGYTIGALSDASLSWTYDGVDYLLSSKDLSKEEMVTVAKSMQG
                     QSSK*"
                     /label="ydcC CDS"
     gene            497808..498824
                     /gene="ydcC"
                     /locus_tag="BSU_04630"
                     /old_locus_tag="BSU04630"
                     /label="ydcC gene"
     downshifts      498809
                     /Source="Nicolas_upshifts"
                     /id="D222"
                     /incds=0
                     /nref=193
                     /ntot=256
                     /MaxReadThrough="3.39815"
                     /MaxDrop="6.13946"
                     /score="22.0391647"
                     /energy="-9.5"
                     /TU="U366"
                     /idTUdmin="U363"
                     /TUdmin=0
                     /isTUend="TRUE"
                     /label="downshifts"
     promotor_-35    498869..498876
                     /Source="Nicolas_upshift_promotors"
                     /id="U367"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.652347652347652"
                     /psig=1
                     /xcortree=1877
                     /SigmaFactorBS="aaacatgatttggcctttttttcgttagacatCGTTTCCCtt
                     tagcctttaatTTTAGTATGATATGTAAATGatattgaataaaagctaggaagtgtcg
                     t"
                     /listShort="alrA, endB, ndoA, rsbRA, rsbS, rsbT, rsbU,
                     rsbV, rsbW, sigB, rsbX"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    498890..498909
                     /Source="Nicolas_upshift_promotors"
                     /id="U367"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.652347652347652"
                     /psig=1
                     /xcortree=1877
                     /SigmaFactorBS="aaacatgatttggcctttttttcgttagacatCGTTTCCCtt
                     tagcctttaatTTTAGTATGATATGTAAATGatattgaataaaagctaggaagtgtcg
                     t"
                     /listShort="alrA, endB, ndoA, rsbRA, rsbS, rsbT, rsbU,
                     rsbV, rsbW, sigB, rsbX"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        498897
                     /Source="Nicolas_upshifts"
                     /id="U367"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.652347652347652"
                     /psig=1
                     /xcortree=1877
                     /SigmaFactorBS="aaacatgatttggcctttttttcgttagacatCGTTTCCCtt
                     tagcctttaatTTTAGTATGATATGTAAATGatattgaataaaagctaggaagtgtcg
                     t"
                     /listShort="alrA, endB, ndoA, rsbRA, rsbS, rsbT, rsbU,
                     rsbV, rsbW, sigB, rsbX"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             498939..500108
                     /gene="alrA"
                     /locus_tag="BSU_04640"
                     /old_locus_tag="BSU04640"
                     /EC_number="5.1.1.1"
                     /function="16.2: Construct biomass (Anabolism)"
                     /function="16.13: Shape"
                     /function="16.8: Protect"
                     /function="16.11: Scavenge (Catabolism)"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 1c: Function from experimental evidences
                     in the studied genus; PubMedId: 2835089, 12682299,
                     15043879, 18399999, 25227915; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="D-alanine racemase"
                     /protein_id="NP_388345.1"
                     /db_xref="EnsemblGenomes-Gn:BSU04640"
                     /db_xref="EnsemblGenomes-Tr:CAB12271"
                     /db_xref="GOA:P10725"
                     /db_xref="InterPro:IPR000821"
                     /db_xref="InterPro:IPR001608"
                     /db_xref="InterPro:IPR009006"
                     /db_xref="InterPro:IPR011079"
                     /db_xref="InterPro:IPR020622"
                     /db_xref="InterPro:IPR029066"
                     /db_xref="SubtiList:BG10950"
                     /db_xref="UniProtKB/Swiss-Prot:P10725"
                     /translation="MSTKPFYRDTWAEIDLSAIKENVSNMKKHIGEHVHLMAVVKANA
                     YGHGDAETAKAALDAGASCLAVAILDEAISLRKKGLKAPILVLGAVPPEYVAIAAEYD
                     VTLTGYSVEWLQEAARHTKKGSLHFHLKVDTGMNRLGVKTEEEVQNVMAILDRNPRLK
                     CKGVFTHFATADEKERGYFLMQFERFKELIAPLPLKNLMVHCANSAAGLRLKKGFFNA
                     VRFGIGMYGLRPSADMSDEIPFQLRPAFTLHSTLSHVKLIRKGESVSYGAEYTAEKDT
                     WIGTVPVGYADGWLRKLKGTDILVKGKRLKIAGRICMDQFMVELDQEYPPGTKVTLIG
                     RQGDEYISMDEIAGRLETINYEVACTISSRVPRMFLENGSIMEVRNPLLQVNISN*"
                     /label="alrA CDS"
     gene            498939..500108
                     /gene="alrA"
                     /locus_tag="BSU_04640"
                     /old_locus_tag="BSU04640"
                     /label="alrA gene"
     promotor_-35    500037..500042
                     /Source="Nicolas_upshift_promotors"
                     /id="U368"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.93906093906094"
                     /psig="0.93906093906094"
                     /xcortree=1177
                     /SigmaFactorBS="tgaggtggcctgtacaataagttcccgtgttcccCGTATGtt
                     tttggaaaatggGAGTATAATGGAAGTAAGAaatcctttattgcaggtaaatataagc
                     a"
                     /listShort="endB, ndoA, rsbRA, rsbS, rsbT, rsbU, rsbV,
                     rsbW, sigB, rsbX"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    500057..500075
                     /Source="Nicolas_upshift_promotors"
                     /id="U368"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.93906093906094"
                     /psig="0.93906093906094"
                     /xcortree=1177
                     /SigmaFactorBS="tgaggtggcctgtacaataagttcccgtgttcccCGTATGtt
                     tttggaaaatggGAGTATAATGGAAGTAAGAaatcctttattgcaggtaaatataagc
                     a"
                     /listShort="endB, ndoA, rsbRA, rsbS, rsbT, rsbU, rsbV,
                     rsbW, sigB, rsbX"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        500063
                     /Source="Nicolas_upshifts"
                     /id="U368"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.93906093906094"
                     /psig="0.93906093906094"
                     /xcortree=1177
                     /SigmaFactorBS="tgaggtggcctgtacaataagttcccgtgttcccCGTATGtt
                     tttggaaaatggGAGTATAATGGAAGTAAGAaatcctttattgcaggtaaatataagc
                     a"
                     /listShort="endB, ndoA, rsbRA, rsbS, rsbT, rsbU, rsbV,
                     rsbW, sigB, rsbX"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    500138..500141
                     /Source="Nicolas_upshift_promotors"
                     /id="U369"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.527472527472527"
                     /psig=1
                     /xcortree=2132
                     /SigmaFactorBS="taagcaattaacttacctaaatggagaattcataaaacagCT
                     TTgcttgaagagtgaatAATGGTATCATTATCACTGGatggataaaagagtcgtatcc
                     g"
                     /listShort="endB, ndoA, rsbRA, rsbS, rsbT, rsbU, rsbV,
                     rsbW, sigB, rsbX"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    500157..500176
                     /Source="Nicolas_upshift_promotors"
                     /id="U369"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.527472527472527"
                     /psig=1
                     /xcortree=2132
                     /SigmaFactorBS="taagcaattaacttacctaaatggagaattcataaaacagCT
                     TTgcttgaagagtgaatAATGGTATCATTATCACTGGatggataaaagagtcgtatcc
                     g"
                     /listShort="endB, ndoA, rsbRA, rsbS, rsbT, rsbU, rsbV,
                     rsbW, sigB, rsbX"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        500158
                     /Source="Nicolas_upshifts"
                     /id="U369"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.527472527472527"
                     /psig=1
                     /xcortree=2132
                     /SigmaFactorBS="taagcaattaacttacctaaatggagaattcataaaacagCT
                     TTgcttgaagagtgaatAATGGTATCATTATCACTGGatggataaaagagtcgtatcc
                     g"
                     /listShort="endB, ndoA, rsbRA, rsbS, rsbT, rsbU, rsbV,
                     rsbW, sigB, rsbX"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             500224..500505
                     /gene="ndoAI"
                     /locus_tag="BSU_04650"
                     /old_locus_tag="BSU04650"
                     /function="16.3: Control"
                     /function="16.5: Explore"
                     /experiment="publication(s) with functional evidences,
                     PMID:15882409, 21763692, 22720735"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 15882409, 21763692,
                     22720735; Product type r: regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="antitoxin EndoAI"
                     /protein_id="NP_388346.1"
                     /db_xref="EnsemblGenomes-Gn:BSU04650"
                     /db_xref="EnsemblGenomes-Tr:CAB12272"
                     /db_xref="GOA:P96621"
                     /db_xref="InterPro:IPR002145"
                     /db_xref="InterPro:IPR010985"
                     /db_xref="InterPro:IPR013321"
                     /db_xref="PDB:4ME7"
                     /db_xref="SubtiList:BG12091"
                     /db_xref="UniProtKB/Swiss-Prot:P96621"
                     /translation="MSESSARTEMKISLPENLVAELDGVAMREKRSRNELISQAVRAY
                     VSERTTRHNRDLMRRGYMEMAKINLNISSEAHFAECEAETTVERLVSGG*"
                     /label="ndoAI CDS"
     gene            500224..500505
                     /gene="ndoAI"
                     /locus_tag="BSU_04650"
                     /old_locus_tag="BSU04650"
                     /label="ndoAI gene"
     CDS             500510..500860
                     /gene="ndoA"
                     /locus_tag="BSU_04660"
                     /old_locus_tag="BSU04660"
                     /function="16.5: Explore"
                     /function="16.3: Control"
                     /experiment="publication(s) with functional evidences,
                     PMID:15882409, 21763692, 21897862, 22720735"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 15882409, 21763692,
                     21897862, 22720735; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="endoribonuclease toxin"
                     /protein_id="NP_388347.1"
                     /db_xref="EnsemblGenomes-Gn:BSU04660"
                     /db_xref="EnsemblGenomes-Tr:CAB12273"
                     /db_xref="GOA:P96622"
                     /db_xref="InterPro:IPR003477"
                     /db_xref="InterPro:IPR011067"
                     /db_xref="PDB:1NE8"
                     /db_xref="PDB:4MDX"
                     /db_xref="PDB:4ME7"
                     /db_xref="SubtiList:BG12092"
                     /db_xref="UniProtKB/Swiss-Prot:P96622"
                     /translation="MIVKRGDVYFADLSPVVGSEQGGVRPVLVIQNDIGNRFSPTAIV
                     AAITAQIQKAKLPTHVEIDAKRYGFERDSVILLEQIRTIDKQRLTDKITHLDDEMMDK
                     VDEALQISLALIDF*"
                     /label="ndoA CDS"
     gene            500510..500860
                     /gene="ndoA"
                     /locus_tag="BSU_04660"
                     /old_locus_tag="BSU04660"
                     /label="ndoA gene"
     S_feature       complement(500650..501126)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_519083_519559_c"
                     /HighExp="Etha, Gly, Sw, S8, C30, S6, LBGstat, T0.30H, S7,
                     Salt"
                     /AntisenseName="ndoA"
                     /AntisenseCor="-0.36117231948253697"
                     /AntisenseRegPval="-9"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigD, SigB, SigK"
                     /TUshortPSig="1, 1, 0.973"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S163"
     downshifts      complement(500693)
                     /Source="Nicolas_upshifts"
                     /id="D223"
                     /incds=1
                     /nref=6
                     /ntot=171
                     /MaxReadThrough="3.51096"
                     /MaxDrop="3.79912"
                     /score="-8.86444162"
                     /energy="-10.2"
                     /TU="U372"
                     /idTUdmin="U371"
                     /TUdmin="-4"
                     /isTUend="TRUE"
                     /label="downshifts"
     downshifts      500840
                     /Source="Nicolas_upshifts"
                     /id="D224"
                     /incds=0
                     /nref=143
                     /ntot=254
                     /MaxReadThrough="5.57908"
                     /MaxDrop="5.74865"
                     /score="29.7721113"
                     /energy="-8.9"
                     /TU="U367,U368,U369"
                     /idTUdmin="U366"
                     /TUdmin=799
                     /isTUend="FALSE"
                     /label="downshifts"
     promotor_-35    500894..500901
                     /Source="Nicolas_upshift_promotors"
                     /id="U370"
                     /multdbtbs="SigA"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.772227772227772"
                     /psig="0.999000999001"
                     /xcortree=1992
                     /SigmaFactorBS="atatttgcaggttgctcaaatagagcaacttTTTTTGTTttc
                     aaaaaacataAACGATATAATAGTGAAATAacgaaaaaatatgttgttttttattggg
                     a"
                     /listShort="rsbRA, rsbS, rsbT, rsbU, rsbV, rsbW, sigB,
                     rsbX"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    500915..500934
                     /Source="Nicolas_upshift_promotors"
                     /id="U370"
                     /multdbtbs="SigA"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.772227772227772"
                     /psig="0.999000999001"
                     /xcortree=1992
                     /SigmaFactorBS="atatttgcaggttgctcaaatagagcaacttTTTTTGTTttc
                     aaaaaacataAACGATATAATAGTGAAATAacgaaaaaatatgttgttttttattggg
                     a"
                     /listShort="rsbRA, rsbS, rsbT, rsbU, rsbV, rsbW, sigB,
                     rsbX"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        500923
                     /Source="Nicolas_upshifts"
                     /id="U370"
                     /multdbtbs="SigA"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.772227772227772"
                     /psig="0.999000999001"
                     /xcortree=1992
                     /SigmaFactorBS="atatttgcaggttgctcaaatagagcaacttTTTTTGTTttc
                     aaaaaacataAACGATATAATAGTGAAATAacgaaaaaatatgttgttttttattggg
                     a"
                     /listShort="rsbRA, rsbS, rsbT, rsbU, rsbV, rsbW, sigB,
                     rsbX"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             500975..501799
                     /gene="rsbRA"
                     /locus_tag="BSU_04670"
                     /old_locus_tag="BSU04670"
                     /function="16.8: Protect"
                     /function="16.3: Control"
                     /experiment="publication(s) with functional evidences,
                     PMID:15312768, 15583165, 16963570, 17158665, 11157946,
                     20019076, 21362065, 22287516, 23320651, 28271471"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 15312768, 15583165,
                     16963570, 17158665, 11157946, 20019076, 21362065,
                     22287516, 23320651, 28271471; Product type f: factor"
                     /codon_start=1
                     /transl_table=11
                     /product="component of the anxiosome (stressosome);
                     positive regulation of sigma(B) activity in response to
                     salt and heat stress"
                     /protein_id="NP_388348.1"
                     /db_xref="EnsemblGenomes-Gn:BSU04670"
                     /db_xref="EnsemblGenomes-Tr:CAB12274"
                     /db_xref="InterPro:IPR002645"
                     /db_xref="InterPro:IPR014792"
                     /db_xref="InterPro:IPR036513"
                     /db_xref="PDB:2BNL"
                     /db_xref="SubtiList:BG11090"
                     /db_xref="UniProtKB/Swiss-Prot:P42409"
                     /translation="MMSNQTVYQFIAENQNELLQLWTDTLKELSEQESYQLTDQVYEN
                     ISKEYIDILLLSVKDENAAESQISELALRAVQIGLSMKFLATALAEFWKRLYTKMNDK
                     RLPDQESTELIWQIDRFFSPINTEIFNQYSISWEKTVSLQKIALQELSAPLIPVFENI
                     TVMPLVGTIDTERAKRIMENLLNGVVKHRSQVVLIDITGVPVVDTMVAHHIIQASEAV
                     RLVGAKCLLAGIRPEIAQTIVNLGIDLSQVITKNTLQKGIQTALEMTDRKIVSLGE*"
                     /label="rsbRA CDS"
     gene            500975..501799
                     /gene="rsbRA"
                     /locus_tag="BSU_04670"
                     /old_locus_tag="BSU04670"
                     /label="rsbRA gene"
     promotor_-10    complement(501109..501127)
                     /Source="Nicolas_upshift_promotors"
                     /id="U371"
                     /multdbtbs="-"
                     /comp="M10"
                     /sig="SigD"
                     /pcomp=1
                     /psig=1
                     /xcortree=2828
                     /SigmaFactorBS="gccagttcgctgatttggctttcagcagcattttcgtcCTTA
                     ACAGacagcagcagaatGTCGATATATTCTTTAGATatattttcatacacttggtcag
                     t"
                     /listShort="S163"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(501126)
                     /Source="Nicolas_upshifts"
                     /id="U371"
                     /multdbtbs="-"
                     /comp="M10"
                     /sig="SigD"
                     /pcomp=1
                     /psig=1
                     /xcortree=2828
                     /SigmaFactorBS="gccagttcgctgatttggctttcagcagcattttcgtcCTTA
                     ACAGacagcagcagaatGTCGATATATTCTTTAGATatattttcatacacttggtcag
                     t"
                     /listShort="S163"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     S_feature       complement(501128..501727)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_519561_520160_c"
                     /HighExp="Etha, Sw, Gly, S6, S8, S7, B60, Salt, BT,
                     M9-stat"
                     /AntisenseName="rsbRA"
                     /AntisenseCor="-0.53924606340364201"
                     /AntisenseRegPval="-21"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigB, SigK"
                     /TUshortPSig="1, 0.973"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S164"
     promotor_-35    complement(501141..501148)
                     /Source="Nicolas_upshift_promotors"
                     /id="U371"
                     /multdbtbs="-"
                     /comp="M10"
                     /sig="SigD"
                     /pcomp=1
                     /psig=1
                     /xcortree=2828
                     /SigmaFactorBS="gccagttcgctgatttggctttcagcagcattttcgtcCTTA
                     ACAGacagcagcagaatGTCGATATATTCTTTAGATatattttcatacacttggtcag
                     t"
                     /listShort="S163"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    complement(501716..501734)
                     /Source="Nicolas_upshift_promotors"
                     /id="U372"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp=1
                     /psig=1
                     /xcortree=202
                     /SigmaFactorBS="tgaaacgatttttcgatccgtcatttccaatgcTGTTTGAat
                     tcctttttgcaGGGTATTCTTAGTTATAACttgggataaatcaatccccaggttgacg
                     a"
                     /listShort="S164, S163"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(501727)
                     /Source="Nicolas_upshifts"
                     /id="U372"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp=1
                     /psig=1
                     /xcortree=202
                     /SigmaFactorBS="tgaaacgatttttcgatccgtcatttccaatgcTGTTTGAat
                     tcctttttgcaGGGTATTCTTAGTTATAACttgggataaatcaatccccaggttgacg
                     a"
                     /listShort="S164, S163"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     S_feature       complement(501729..502317)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_520162_520750_c"
                     /HighExp="S6, S8, S7, BT, C30, S5, G135, C90, Gly, Fru"
                     /AntisenseName="rsbS"
                     /AntisenseCor="-0.57706416777859804"
                     /AntisenseRegPval="-24.6"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigK"
                     /TUshortPSig="0.973"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S165"
     promotor_-35    complement(501748..501754)
                     /Source="Nicolas_upshift_promotors"
                     /id="U372"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp=1
                     /psig=1
                     /xcortree=202
                     /SigmaFactorBS="tgaaacgatttttcgatccgtcatttccaatgcTGTTTGAat
                     tcctttttgcaGGGTATTCTTAGTTATAACttgggataaatcaatccccaggttgacg
                     a"
                     /listShort="S164, S163"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             501804..502169
                     /gene="rsbS"
                     /locus_tag="BSU_04680"
                     /old_locus_tag="BSU04680"
                     /function="16.3: Control"
                     /function="16.8: Protect"
                     /experiment="publication(s) with functional evidences,
                     PMID:15583165, 16963570, 17158665, 11157946, 23320651,
                     28271471"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 15583165, 16963570,
                     17158665, 11157946, 23320651, 28271471; Product type f :
                     factor"
                     /codon_start=1
                     /transl_table=11
                     /product="antagonist of RsbT"
                     /protein_id="NP_388349.1"
                     /db_xref="EnsemblGenomes-Gn:BSU04680"
                     /db_xref="EnsemblGenomes-Tr:CAB12275"
                     /db_xref="GOA:P42410"
                     /db_xref="InterPro:IPR002645"
                     /db_xref="InterPro:IPR036513"
                     /db_xref="SubtiList:BG11091"
                     /db_xref="UniProtKB/Swiss-Prot:P42410"
                     /translation="MRHPKIPILKLYNCLLVSIQWELDDQTALTFQEDLLNKIYETGA
                     NGVVIDLTSVDMIDSFIAKVLGDVITMSKLMGAKVVLTGIQPAVAVTLIELGIALEEI
                     ETALDLEQGLETLKRELGE*"
                     /label="rsbS CDS"
     gene            501804..502169
                     /gene="rsbS"
                     /locus_tag="BSU_04680"
                     /old_locus_tag="BSU04680"
                     /label="rsbS gene"
     CDS             502173..502574
                     /gene="rsbT"
                     /locus_tag="BSU_04690"
                     /old_locus_tag="BSU04690"
                     /EC_number="2.7.11.1"
                     /function="16.3: Control"
                     /experiment="publication(s) with functional evidences,
                     PMID:15583165, 16963570, 17158665, 11157946, 20019076,
                     20558511, 21362065, 21979936, 23320651"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 15583165, 16963570,
                     17158665, 11157946, 20019076, 20558511, 21362065,
                     21979936, 23320651; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="switch protein/serine-threonine kinase;
                     controlsthe activity of the anxiosome (stressosome)"
                     /protein_id="NP_388350.1"
                     /db_xref="EnsemblGenomes-Gn:BSU04690"
                     /db_xref="EnsemblGenomes-Tr:CAB12276"
                     /db_xref="GOA:P42411"
                     /db_xref="InterPro:IPR003594"
                     /db_xref="InterPro:IPR036890"
                     /db_xref="SubtiList:BG11092"
                     /db_xref="UniProtKB/Swiss-Prot:P42411"
                     /translation="MNDQSCVRIMTEWDIVAARQLGRNVAKELGFGTVDQARITTAIS
                     ELARNIYLYAGKGQIGIEQVADRGKKGLKIIAEDQGPGIPDIRKVMEDGFSTSGGLGA
                     GLPGVKRLMDEFSLNSVAGEGTEIQAIKWLR*"
                     /label="rsbT CDS"
     gene            502173..502574
                     /gene="rsbT"
                     /locus_tag="BSU_04690"
                     /old_locus_tag="BSU04690"
                     /label="rsbT gene"
     promotor_-10    complement(502315..502334)
                     /Source="Nicolas_upshift_promotors"
                     /id="U373"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp="0.973026973026973"
                     /psig="0.973026973026973"
                     /xcortree=1334
                     /SigmaFactorBS="ttttcaggcctttttttcctctgtctgcgacctgtTCAATTC
                     CAAtctgccctttgccGGCATATAAATAAATATTCCtggctaattctgaaatagccgt
                     t"
                     /listShort="S165, S164, S163"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(502332)
                     /Source="Nicolas_upshifts"
                     /id="U373"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp="0.973026973026973"
                     /psig="0.973026973026973"
                     /xcortree=1334
                     /SigmaFactorBS="ttttcaggcctttttttcctctgtctgcgacctgtTCAATTC
                     CAAtctgccctttgccGGCATATAAATAAATATTCCtggctaattctgaaatagccgt
                     t"
                     /listShort="S165, S164, S163"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(502348..502357)
                     /Source="Nicolas_upshift_promotors"
                     /id="U373"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp="0.973026973026973"
                     /psig="0.973026973026973"
                     /xcortree=1334
                     /SigmaFactorBS="ttttcaggcctttttttcctctgtctgcgacctgtTCAATTC
                     CAAtctgccctttgccGGCATATAAATAAATATTCCtggctaattctgaaatagccgt
                     t"
                     /listShort="S165, S164, S163"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             502586..503593
                     /gene="rsbU"
                     /locus_tag="BSU_04700"
                     /old_locus_tag="BSU04700"
                     /EC_number="3.1.3.3"
                     /function="16.3: Control"
                     /experiment="publication(s) with functional evidences,
                     PMID:15583165, 16963570, 17158665, 17303566, 21979936,
                     28461450"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 15583165, 16963570,
                     17158665, 17303566, 21979936, 28461450; Product type e :
                     enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="protein serine phosphatase; controls the
                     activity of the anxiosome (stressosome)"
                     /protein_id="NP_388351.1"
                     /db_xref="EnsemblGenomes-Gn:BSU04700"
                     /db_xref="EnsemblGenomes-Tr:CAB12277"
                     /db_xref="GOA:P40399"
                     /db_xref="InterPro:IPR001932"
                     /db_xref="InterPro:IPR014787"
                     /db_xref="InterPro:IPR017944"
                     /db_xref="InterPro:IPR036457"
                     /db_xref="PDB:1W53"
                     /db_xref="PDB:2J6Y"
                     /db_xref="PDB:2J6Z"
                     /db_xref="PDB:2J70"
                     /db_xref="SubtiList:BG11057"
                     /db_xref="UniProtKB/Swiss-Prot:P40399"
                     /translation="MDFREVIEQRYHQLLSRYIAELTETSLYQAQKFSRKTIEHQIPP
                     EEIISIHRKVLKELYPSLPEDVFHSLDFLIEVMIGYGMAYQEHQTLRGIQQEIKSEIE
                     IAANVQQTLLGTKVPQEEALDIGAISVPAKQMSGDYYHFVKDKESINIAIADVIGKGI
                     PAALCMSMIKYAMDSLPETGIHPSQVLKNLNRVVEQNVDASMFITMFYANYNMDKHQF
                     TYASAGHEPGFYYSQKDNTFYDLEAKGLVLGISQDYDYKQFDQHLEKGDMIVLFSDGV
                     TECRTENGFLERPDLQKLIEEHMCSSAQEMVKNIYDSLLKLQDFQLHDDFTLIVLRRK
                     V*"
                     /label="rsbU CDS"
     gene            502586..503593
                     /gene="rsbU"
                     /locus_tag="BSU_04700"
                     /old_locus_tag="BSU04700"
                     /label="rsbU gene"
     promotor_-35    503587..503593
                     /Source="Nicolas_upshift_promotors"
                     /id="U374"
                     /multdbtbs="SigB"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp=1
                     /psig=1
                     /xcortree=260
                     /SigmaFactorBS="cgatgattttacgttaattgttttgcggagaaaGGTTTAAcg
                     tctgtcagacgaGGGTATAAAGCAACTAGTGatttgaaggaaaatttgaggtgatacg
                     a"
                     /listShort="rsbV, rsbW, sigB, rsbX"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    503608..503626
                     /Source="Nicolas_upshift_promotors"
                     /id="U374"
                     /multdbtbs="SigB"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp=1
                     /psig=1
                     /xcortree=260
                     /SigmaFactorBS="cgatgattttacgttaattgttttgcggagaaaGGTTTAAcg
                     tctgtcagacgaGGGTATAAAGCAACTAGTGatttgaaggaaaatttgaggtgatacg
                     a"
                     /listShort="rsbV, rsbW, sigB, rsbX"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        503614
                     /Source="Nicolas_upshifts"
                     /id="U374"
                     /multdbtbs="SigB"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp=1
                     /psig=1
                     /xcortree=260
                     /SigmaFactorBS="cgatgattttacgttaattgttttgcggagaaaGGTTTAAcg
                     tctgtcagacgaGGGTATAAAGCAACTAGTGatttgaaggaaaatttgaggtgatacg
                     a"
                     /listShort="rsbV, rsbW, sigB, rsbX"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             503655..503984
                     /gene="rsbV"
                     /locus_tag="BSU_04710"
                     /old_locus_tag="BSU04710"
                     /function="16.3: Control"
                     /experiment="publication(s) with functional evidences,
                     PMID:15342585, 15583165, 16077134, 16885458, 20454630,
                     21979936, 27977677"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 15342585, 15583165,
                     16077134, 16885458, 20454630, 21979936, 27977677; Product
                     type f: factor"
                     /codon_start=1
                     /transl_table=11
                     /product="anti-anti-sigma factor (antagonist of RsbW)"
                     /protein_id="NP_388352.1"
                     /db_xref="EnsemblGenomes-Gn:BSU04710"
                     /db_xref="EnsemblGenomes-Tr:CAB12278"
                     /db_xref="GOA:P17903"
                     /db_xref="InterPro:IPR002645"
                     /db_xref="InterPro:IPR003658"
                     /db_xref="InterPro:IPR036513"
                     /db_xref="SubtiList:BG10733"
                     /db_xref="UniProtKB/Swiss-Prot:P17903"
                     /translation="MNINVDVKQNENDIQVNIAGEIDVYSAPVLREKLVPLAEQGADL
                     RICLKDVSYMDSTGLGVFVGTFKMVKKQGGSLKLENLSERLIRLFDITGLKDIIDISA
                     KSEGGVQ*"
                     /label="rsbV CDS"
     gene            503655..503984
                     /gene="rsbV"
                     /locus_tag="BSU_04710"
                     /old_locus_tag="BSU04710"
                     /label="rsbV gene"
     CDS             503981..504463
                     /gene="rsbW"
                     /locus_tag="BSU_04720"
                     /old_locus_tag="BSU04720"
                     /EC_number="2.7.11.1"
                     /function="16.3: Control"
                     /experiment="publication(s) with functional evidences,
                     PMID:15342585, 15583165, 16077134, 16885458, 21979936,
                     27977677"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 15342585, 15583165,
                     16077134, 16885458, 21979936, 27977677; Product type e :
                     enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="switch protein/serine kinase and anti-sigma
                     factor (inhibitory sigma-B binding protein)"
                     /protein_id="NP_388353.1"
                     /db_xref="EnsemblGenomes-Gn:BSU04720"
                     /db_xref="EnsemblGenomes-Tr:CAB12279"
                     /db_xref="GOA:P17904"
                     /db_xref="InterPro:IPR003594"
                     /db_xref="InterPro:IPR010193"
                     /db_xref="InterPro:IPR036890"
                     /db_xref="SubtiList:BG10734"
                     /db_xref="UniProtKB/Swiss-Prot:P17904"
                     /translation="MKNNADYIEMKVPAQPEYVGIIRLTLSGVASRMGYTYDEIEDLK
                     IAVSEACTNAVQHAYKEDKNGEVSIRFGVFEDRLEVIVADEGDSFDFDQKQQDLGPYT
                     PSHTVDQLSEGGLGLYLMETLMDEVRVQNHSGVTVAMTKYLNGERVDHDTTIKNYETN
                     *"
                     /label="rsbW CDS"
     gene            503981..504463
                     /gene="rsbW"
                     /locus_tag="BSU_04720"
                     /old_locus_tag="BSU04720"
                     /label="rsbW gene"
     CDS             504429..505217
                     /gene="sigB"
                     /locus_tag="BSU_04730"
                     /old_locus_tag="BSU04730"
                     /function="16.3: Control"
                     /function="16.8: Protect"
                     /experiment="publication(s) with functional evidences,
                     PMID:15312768, 15805528, 16077134, 16267279, 16321960,
                     17158665, 28271471"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 15312768, 15805528,
                     16077134, 16267279, 16321960, 17158665, 28271471; Product
                     type r: regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase sigma-37 factor (sigma(B))"
                     /protein_id="NP_388354.2"
                     /db_xref="EnsemblGenomes-Gn:BSU04730"
                     /db_xref="EnsemblGenomes-Tr:CAB12280"
                     /db_xref="GOA:P06574"
                     /db_xref="InterPro:IPR000943"
                     /db_xref="InterPro:IPR007624"
                     /db_xref="InterPro:IPR007627"
                     /db_xref="InterPro:IPR007630"
                     /db_xref="InterPro:IPR013324"
                     /db_xref="InterPro:IPR013325"
                     /db_xref="InterPro:IPR014284"
                     /db_xref="InterPro:IPR014288"
                     /db_xref="InterPro:IPR014322"
                     /db_xref="InterPro:IPR036388"
                     /db_xref="SubtiList:BG10735"
                     /db_xref="UniProtKB/Swiss-Prot:P06574"
                     /translation="MTQPSKTTKLTKDEVDRLISDYQTKQDEQAQETLVRVYTNLVDM
                     LAKKYSKGKSFHEDLRQVGMIGLLGAIKRYDPVVGKSFEAFAIPTIIGEIKRFLRDKT
                     WSVHVPRRIKELGPRIKMAVDQLTTETQRSPKVEEIAEFLDVSEEEVLETMEMGKSYQ
                     ALSVDHSIEADSDGSTVTILDIVGSQEDGYERVNQQLMLQSVLHVLSDREKQIIDLTY
                     IQNKSQKETGDILGISQMHVSRLQRKAVKKLREALIEDPSMELM*"
                     /label="sigB CDS"
     gene            504429..505217
                     /gene="sigB"
                     /locus_tag="BSU_04730"
                     /old_locus_tag="BSU04730"
                     /label="sigB gene"
     CDS             505217..505816
                     /gene="rsbX"
                     /locus_tag="BSU_04740"
                     /old_locus_tag="BSU04740"
                     /EC_number="3.1.3.3"
                     /function="16.3: Control"
                     /experiment="publication(s) with functional evidences,
                     PMID:10671474, 12950928, 15466036, 9068644, 9658013,
                     21979936, 26057679"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 10671474, 12950928,
                     15466036, 9068644, 9658013, 21979936, 26057679; Product
                     type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="serine phosphatase"
                     /protein_id="NP_388355.1"
                     /db_xref="EnsemblGenomes-Gn:BSU04740"
                     /db_xref="EnsemblGenomes-Tr:CAB12281"
                     /db_xref="GOA:P17906"
                     /db_xref="InterPro:IPR001932"
                     /db_xref="InterPro:IPR036457"
                     /db_xref="PDB:3W40"
                     /db_xref="PDB:3W41"
                     /db_xref="PDB:3W42"
                     /db_xref="PDB:3W43"
                     /db_xref="PDB:3W44"
                     /db_xref="PDB:3W45"
                     /db_xref="SubtiList:BG10736"
                     /db_xref="UniProtKB/Swiss-Prot:P17906"
                     /translation="MIQVEENEHIQTLVYQLNKEGKSICGDSFFMKADDKELICAVAD
                     GLGSGSLANESSAAIKDLVENYASEDVESIIERCNQAMKNKRGATASILKINFEQRQF
                     TYCSVGNVRFILHSPSGESFYPLPISGYLSGKPQKYKTHTATYEKGSKFIIHTDGLNV
                     PDIRSHLKKGQSVEEISNSLKMYTTSRKDDLTYILGQLS*"
                     /label="rsbX CDS"
     gene            505217..505816
                     /gene="rsbX"
                     /locus_tag="BSU_04740"
                     /old_locus_tag="BSU04740"
                     /label="rsbX gene"
     downshifts      505802
                     /Source="Nicolas_upshifts"
                     /id="D225"
                     /incds=0
                     /nref=267
                     /ntot=278
                     /MaxReadThrough="2.46753"
                     /MaxDrop="7.92167"
                     /score="1.26147577"
                     /energy="-6"
                     /TU="NA"
                     /idTUdmin="U369"
                     /TUdmin="-3"
                     /isTUend="TRUE"
                     /label="downshifts"
     promotor_-35    505860..505866
                     /Source="Nicolas_upshift_promotors"
                     /id="U375"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.427572427572428"
                     /psig=1
                     /xcortree=2529
                     /SigmaFactorBS="gctggacatccggcttcttttttttgcGGTTGACtattaata
                     agtgcgCTTATTATAATTAATAAGTGaacttatcattctgggagcttatgggatgtgg
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    505881..505900
                     /Source="Nicolas_upshift_promotors"
                     /id="U375"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.427572427572428"
                     /psig=1
                     /xcortree=2529
                     /SigmaFactorBS="gctggacatccggcttcttttttttgcGGTTGACtattaata
                     agtgcgCTTATTATAATTAATAAGTGaacttatcattctgggagcttatgggatgtgg
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     Polymorphism    join(505889,505891)
                     /Source="geneious"
                     /ID="SNP_BsDelta6_524323_524323"
                     /Polymorphism_Type="SNP (transversion)"
                     /note="SNP between marked nucleotides"
                     /strain="Bacillus subtilis Delta6"
                     /Length=1
                     /Amino_Acid_Change
                     /CDS_Position
                     /Change="A -> C"
                     /Codon_Change
                     /Coverage=183
                     /locus_tag
                     /Protein_Effect
                     /Reference_Frequency
                     /Reference_Nucleotides="A"
                     /Variant_Nucleotides="C"
                     /Variant_P_Value=0
                     /Variant_Raw_Frequency=183
                     /comment="BSU_04745_promoter_down_mutation"
                     /modified_by="User"
                     /
                     /label="Polymorphism_Delta6"
     upshifts        505893
                     /Source="Nicolas_upshifts"
                     /id="U375"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.427572427572428"
                     /psig=1
                     /xcortree=2529
                     /SigmaFactorBS="gctggacatccggcttcttttttttgcGGTTGACtattaata
                     agtgcgCTTATTATAATTAATAAGTGaacttatcattctgggagcttatgggatgtgg
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             505927..506043
                     /locus_tag="BSU_04745"
                     /old_locus_tag="BSU04745"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 5: Unknown function"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_009513945.1"
                     /translation="MWNYEYTAIADVDVGKPGTVIRKQKQWINGRRVLHQIL*"
                     /label="hypothetical protein CDS"
     gene            505927..506043
                     /locus_tag="BSU_04745"
                     /old_locus_tag="BSU04745"
                     /label="gene"
     CDS             506059..506352
                     /gene="ydcF"
                     /locus_tag="BSU_04750"
                     /old_locus_tag="BSU04750"
                     /function="18: Unknown function"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved protein of unknown function"
                     /protein_id="NP_388356.1"
                     /db_xref="EnsemblGenomes-Gn:BSU04750"
                     /db_xref="EnsemblGenomes-Tr:CAB12282"
                     /db_xref="SubtiList:BG12093"
                     /db_xref="UniProtKB/Swiss-Prot:P96623"
                     /translation="MERKEHCFCKEKQFSYGLSMWRNIGRFLSWSTCPHSNVIMEFFH
                     VLQKQKEDLCITYGIVLEGAEAKKWGEIIGTELSKDMPTAVSRLVHLYGGVIK*"
                     /label="ydcF CDS"
     gene            506059..506352
                     /gene="ydcF"
                     /locus_tag="BSU_04750"
                     /old_locus_tag="BSU04750"
                     /label="ydcF gene"
     promotor_-35    506320..506328
                     /Source="Nicolas_upshift_promotors"
                     /id="U376"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.65034965034965"
                     /psig=1
                     /xcortree=2272
                     /SigmaFactorBS="agacatgccgacggctgtcagcaggCTTGTCCATctttacgg
                     aggAGTGATAAAATGAACACAAAttactggatcggcgttgtgtcagagcaacatgtat
                     t"
                     /listShort="ydcG, ydcH"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    506340..506359
                     /Source="Nicolas_upshift_promotors"
                     /id="U376"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.65034965034965"
                     /psig=1
                     /xcortree=2272
                     /SigmaFactorBS="agacatgccgacggctgtcagcaggCTTGTCCATctttacgg
                     aggAGTGATAAAATGAACACAAAttactggatcggcgttgtgtcagagcaacatgtat
                     t"
                     /listShort="ydcG, ydcH"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     CDS             506349..506789
                     /gene="ydcG"
                     /locus_tag="BSU_04760"
                     /old_locus_tag="BSU04760"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved protein of unknown function"
                     /protein_id="NP_388357.1"
                     /db_xref="EnsemblGenomes-Gn:BSU04760"
                     /db_xref="EnsemblGenomes-Tr:CAB12283"
                     /db_xref="InterPro:IPR002740"
                     /db_xref="InterPro:IPR015947"
                     /db_xref="InterPro:IPR022996"
                     /db_xref="SubtiList:BG12094"
                     /db_xref="UniProtKB/Swiss-Prot:P96624"
                     /translation="MNTNYWIGVVSEQHVLKGAAGGFAQLCHGKKAPLAKMKEGDWLI
                     YYSPRDAYPDGKLLRSFTAIGKVKSGNIYPYQMAPNFIPYRLDIDYYPCHKIGFYDIK
                     SKLEFVQETKHLGFLFRRGHFEISKKDFLTIAQAMGVNISGMAL*"
                     /label="ydcG CDS"
     gene            506349..506789
                     /gene="ydcG"
                     /locus_tag="BSU_04760"
                     /old_locus_tag="BSU04760"
                     /label="ydcG gene"
     upshifts        506355
                     /Source="Nicolas_upshifts"
                     /id="U376"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.65034965034965"
                     /psig=1
                     /xcortree=2272
                     /SigmaFactorBS="agacatgccgacggctgtcagcaggCTTGTCCATctttacgg
                     aggAGTGATAAAATGAACACAAAttactggatcggcgttgtgtcagagcaacatgtat
                     t"
                     /listShort="ydcG, ydcH"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     S_feature       complement(506588..509643)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_525021_528076_c"
                     /HighExp="S6, S8, S7, S5, B36, S4, B60, BT, Pyr, C30"
                     /AntisenseName="ydcI"
                     /AntisenseCor="-0.61304426345041496"
                     /AntisenseRegPval="-28.4"
                     /CDS_PredictionProba="0.40759499999999999"
                     /TUshortSig="SigK"
                     /TUshortPSig="0.994"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S166"
     CDS             506773..507216
                     /gene="ydcH"
                     /locus_tag="BSU_04770"
                     /old_locus_tag="BSU04770"
                     /function="16.3: Control"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 12088660; Product type
                     r: regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="putative transcriptional regulator"
                     /protein_id="NP_388358.1"
                     /db_xref="EnsemblGenomes-Gn:BSU04770"
                     /db_xref="EnsemblGenomes-Tr:CAB12284"
                     /db_xref="GOA:P96625"
                     /db_xref="InterPro:IPR000835"
                     /db_xref="InterPro:IPR036388"
                     /db_xref="InterPro:IPR036390"
                     /db_xref="SubtiList:BG12095"
                     /db_xref="UniProtKB/Swiss-Prot:P96625"
                     /translation="MEWHSKFSGPNTSPGFLLWQATQSWQRKVGKALAEFDLTHVQFV
                     LLTSCKYMIAHGETVTQKKLASFSQTNIMMVSEVVRTLEKKGFIERSKNPQDKREVLL
                     SLTEIGGEKVTAALPIVEKIDQAFFAAAMKKENFLSGLQELLKHE*"
                     /label="ydcH CDS"
     gene            506773..507216
                     /gene="ydcH"
                     /locus_tag="BSU_04770"
                     /old_locus_tag="BSU04770"
                     /label="ydcH gene"
     downshifts      507191
                     /Source="Nicolas_upshifts"
                     /id="D226"
                     /incds=0
                     /nref=11
                     /ntot=147
                     /MaxReadThrough="2.17786"
                     /MaxDrop="3.86856"
                     /score="21.3746204"
                     /energy="-6.8"
                     /TU="NA"
                     /idTUdmin="U376"
                     /TUdmin=0
                     /isTUend="TRUE"
                     /label="downshifts"
     promotor_-35    507247..507248
                     /Source="Nicolas_upshift_promotors"
                     /id="U377"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.712287712287712"
                     /psig="0.997002997002997"
                     /xcortree=1998
                     /SigmaFactorBS="gaaacatgagtaaagatacgggcagcgccagctgtctttttt
                     tATgtgtttttttcggttTTTGATACACTAGAGAAAGAacgacaaaattggaggcttt
                     g"
                     /listShort="ydcI, S167, ydcK"
                     /listLong="S168, trnS-Asn, trnS-Ser, trnS-Glu, trnS-Gln,
                     trnS-Lys, trnS-Leu1, trnS-Leu2"
                     /label="promotor_-35"
     promotor_-10    507264..507283
                     /Source="Nicolas_upshift_promotors"
                     /id="U377"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.712287712287712"
                     /psig="0.997002997002997"
                     /xcortree=1998
                     /SigmaFactorBS="gaaacatgagtaaagatacgggcagcgccagctgtctttttt
                     tATgtgtttttttcggttTTTGATACACTAGAGAAAGAacgacaaaattggaggcttt
                     g"
                     /listShort="ydcI, S167, ydcK"
                     /listLong="S168, trnS-Asn, trnS-Ser, trnS-Glu, trnS-Gln,
                     trnS-Lys, trnS-Leu1, trnS-Leu2"
                     /label="promotor_-10"
     upshifts        507264
                     /Source="Nicolas_upshifts"
                     /id="U377"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.712287712287712"
                     /psig="0.997002997002997"
                     /xcortree=1998
                     /SigmaFactorBS="gaaacatgagtaaagatacgggcagcgccagctgtctttttt
                     tATgtgtttttttcggttTTTGATACACTAGAGAAAGAacgacaaaattggaggcttt
                     g"
                     /listShort="ydcI, S167, ydcK"
                     /listLong="S168, trnS-Asn, trnS-Ser, trnS-Glu, trnS-Gln,
                     trnS-Lys, trnS-Leu1, trnS-Leu2"
                     /label="upshifts"
     CDS             507310..509469
                     /gene="tex"
                     /locus_tag="BSU_04780"
                     /old_locus_tag="BSU04780"
                     /function="16.3: Control"
                     /function="16.6: Maintain"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 2a: Function from experimental evidences
                     in other organisms; PubMedId: 8755871, 12910271, 15383836,
                     16282592; Product type f: factor"
                     /codon_start=1
                     /transl_table=11
                     /product="RNA helicase transcriptional accessory protein"
                     /protein_id="NP_388359.2"
                     /db_xref="EnsemblGenomes-Gn:BSU04780"
                     /db_xref="EnsemblGenomes-Tr:CAB12285"
                     /db_xref="GOA:O31489"
                     /db_xref="InterPro:IPR003029"
                     /db_xref="InterPro:IPR006641"
                     /db_xref="InterPro:IPR010994"
                     /db_xref="InterPro:IPR012337"
                     /db_xref="InterPro:IPR012340"
                     /db_xref="InterPro:IPR018974"
                     /db_xref="InterPro:IPR022967"
                     /db_xref="InterPro:IPR023319"
                     /db_xref="InterPro:IPR023323"
                     /db_xref="InterPro:IPR032639"
                     /db_xref="SubtiList:BG12096"
                     /db_xref="UniProtKB/Swiss-Prot:O31489"
                     /translation="METSALLKQQIAKEIGLSQKHVESVIRLLEDGNTVPFIARYRKE
                     QTGSMDEVQIQTISERWQYIQNLNQRKEEVIRLIAEQDKLTDNLKRKIEQSVKLQEVE
                     DLYRPYKQKRKTKATVAKSKGLEPLADYILTLPQDDHLAATADQYISEEKEVFTREEA
                     IEGAKHIIAEQISDEPTFRKWIRQETFKRGTIKSAAGKSADTDEKNVYEMYYEYEEPI
                     AKVVPHRVLAMNRGEKEDILKVAIEPPADHIKAYLEKQIIKNRSTSVREILQETIEDS
                     YKRLIQPAIEREIRKELSEKADEQAIHIFSENLRKLLLQPPMKGKTVLGVDPAFRTGC
                     KLAVSDETGKVLKIDVIYPHAPVNKTKEAHEKVKKILEQYQVEMVAIGNGTASRETEQ
                     FIVNVLRDMPRKIYYVIVNEAGASVYSASELAREEFPDLKVEERSAVSIARRLQDPLA
                     ELVKIDPKSVGVGQYQHDVSQKRLNESLRFVVETVVNQVGVNVNTASAALLQYVAGLS
                     KSVAGNVVKKREEIGKFSNRKELKDIPRLGAKTYEQCIGFLRVQEGTEPLDRTGIHPE
                     SYKETKALLKKLGLSTEHIGTAELKDKINQLALSETAKELGIGEITLKDICEQLTRPE
                     RDPRDKVPKPLLKTDVLQLEDLKEGMELQGTVRNVVDFGAFVDIGVKQDGLVHISKLS
                     NQFVKHPLDVVSVGDIVTVWVDGVDVQKGRVSLSMVK*"
                     /label="tex CDS"
     gene            507310..509469
                     /gene="tex"
                     /locus_tag="BSU_04780"
                     /old_locus_tag="BSU04780"
                     /label="tex gene"
     misc_feature    509457..509476
                     /Source="Nicolas_upshift_promotors"
                     /id="U378"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.995004995004995"
                     /psig="0.999000999001"
                     /xcortree=2162
                     /SigmaFactorBS="gacggcgtagatgtacaaaaaggcagagtatcgctgtcTATG
                     GTAAAATAAAAGCACTgcttacgagcagtgttttttcctatagaaataccagcattga
                     t"
                     /listShort="S167, ydcK, S168, trnS-Asn, trnS-Ser,
                     trnS-Glu, trnS-Gln, trnS-Lys, trnS-Leu1"
                     /listLong="trnS-Leu2, S169"
                     /label="promotor_single_box"
                     /note="Geneious type: promotor_single_box"
     S_feature       509479..509695
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_527912_528128"
                     /HighExp="Cold, Etha, LBGstat, dia5, LPhT, T4.0H, dia15,
                     T3.0H, T2.30H, T3.30H"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA, SigA"
                     /TUshortPSig="0.999, 0.997"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S167"
     upshifts        509479
                     /Source="Nicolas_upshifts"
                     /id="U378"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.995004995004995"
                     /psig="0.999000999001"
                     /xcortree=2162
                     /SigmaFactorBS="gacggcgtagatgtacaaaaaggcagagtatcgctgtcTATG
                     GTAAAATAAAAGCACTgcttacgagcagtgttttttcctatagaaataccagcattga
                     t"
                     /listShort="S167, ydcK, S168, trnS-Asn, trnS-Ser,
                     trnS-Glu, trnS-Gln, trnS-Lys, trnS-Leu1"
                     /listLong="trnS-Leu2, S169"
                     /label="upshifts"
     CDS             complement(509479..509592)
                     /gene="cmpA"
                     /locus_tag="BSU_04785"
                     /old_locus_tag="BSU04785"
                     /function="16.3: Control"
                     /function="16.6: Maintain"
                     /function="16.1: Circulate"
                     /experiment="publication(s) with functional evidences,
                     PMID:22463703, 26387458"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 22463703, 26387458;
                     Product type f: factor"
                     /codon_start=1
                     /transl_table=11
                     /product="factor allowing degradation of SpoIVA by ClpXP"
                     /protein_id="YP_009513946.1"
                     /translation="MPNWLKKQMQKAFLEKDNYQIKLLNQCWYFYRKKHCS*"
                     /label="cmpA CDS"
     gene            complement(509479..509592)
                     /gene="cmpA"
                     /locus_tag="BSU_04785"
                     /old_locus_tag="BSU04785"
                     /label="cmpA gene"
     promotor_-10    complement(509632..509651)
                     /Source="Nicolas_upshift_promotors"
                     /id="U379"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp="0.994005994005994"
                     /psig="0.994005994005994"
                     /xcortree=1320
                     /SigmaFactorBS="tctttgttatccatggtgcacctcacttaaaaaacATTGAAC
                     GGgacaattcaccgttCGCATACAATATGGTAATCActgtccctcttatgataaaagc
                     t"
                     /listShort="S166"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(509649)
                     /Source="Nicolas_upshifts"
                     /id="U379"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp="0.994005994005994"
                     /psig="0.994005994005994"
                     /xcortree=1320
                     /SigmaFactorBS="tctttgttatccatggtgcacctcacttaaaaaacATTGAAC
                     GGgacaattcaccgttCGCATACAATATGGTAATCActgtccctcttatgataaaagc
                     t"
                     /listShort="S166"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(509666..509674)
                     /Source="Nicolas_upshift_promotors"
                     /id="U379"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp="0.994005994005994"
                     /psig="0.994005994005994"
                     /xcortree=1320
                     /SigmaFactorBS="tctttgttatccatggtgcacctcacttaaaaaacATTGAAC
                     GGgacaattcaccgttCGCATACAATATGGTAATCActgtccctcttatgataaaagc
                     t"
                     /listShort="S166"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             509696..510148
                     /gene="ydcK"
                     /locus_tag="BSU_04790"
                     /old_locus_tag="BSU04790"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved protein of unknown function"
                     /protein_id="NP_388360.1"
                     /db_xref="EnsemblGenomes-Gn:BSU04790"
                     /db_xref="EnsemblGenomes-Tr:CAB12286"
                     /db_xref="GOA:P96628"
                     /db_xref="InterPro:IPR006640"
                     /db_xref="InterPro:IPR023524"
                     /db_xref="InterPro:IPR035240"
                     /db_xref="SubtiList:BG12098"
                     /db_xref="UniProtKB/Swiss-Prot:P96628"
                     /translation="MDNKELQKLTEDISETYFKKPFRHQALFNDRLKTTGGRYLLTSH
                     NIELNRKYLIEHGREELIGIIKHELCHYHLHLEGKGYKHRDRDFRMLLQQVNAPRFCT
                     PLKKKAENKKTYMYICTTCGQQYIKKRAMNPDRYRCGKCRGKIKRIFS*"
                     /label="ydcK CDS"
     gene            509696..510148
                     /gene="ydcK"
                     /locus_tag="BSU_04790"
                     /old_locus_tag="BSU04790"
                     /label="ydcK gene"
     promotor_-35    510154..510160
                     /Source="Nicolas_upshift_promotors"
                     /id="U380"
                     /multdbtbs="-"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp="0.576423576423576"
                     /psig=1
                     /xcortree=2626
                     /SigmaFactorBS="gaaaaataaaaagaattttttcgtgaaaaagGTTGACGaata
                     tggcaagcctATGTTACATTATAAAAGTCGtcacgagagataaataaaaacatttacc
                     t"
                     /listShort="S168, trnS-Asn, trnS-Ser, trnS-Glu, trnS-Gln,
                     trnS-Lys, trnS-Leu1, trnS-Leu2, S169"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    510175..510194
                     /Source="Nicolas_upshift_promotors"
                     /id="U380"
                     /multdbtbs="-"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp="0.576423576423576"
                     /psig=1
                     /xcortree=2626
                     /SigmaFactorBS="gaaaaataaaaagaattttttcgtgaaaaagGTTGACGaata
                     tggcaagcctATGTTACATTATAAAAGTCGtcacgagagataaataaaaacatttacc
                     t"
                     /listShort="S168, trnS-Asn, trnS-Ser, trnS-Glu, trnS-Gln,
                     trnS-Lys, trnS-Leu1, trnS-Leu2, S169"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     S_feature       510183..510270
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_528616_528703"
                     /HighExp="C30, LBGstat, Cold, UNK1, GM 25, GM 120, GM 15,
                     Heat, T-3.40H, GM 90"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA, SigA"
                     /TUshortPSig="1, 0.999"
                     /TUlongSig="SigA"
                     /TUlongPSig="0.997"
                     /label="S168"
     upshifts        510183
                     /Source="Nicolas_upshifts"
                     /id="U380"
                     /multdbtbs="-"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp="0.576423576423576"
                     /psig=1
                     /xcortree=2626
                     /SigmaFactorBS="gaaaaataaaaagaattttttcgtgaaaaagGTTGACGaata
                     tggcaagcctATGTTACATTATAAAAGTCGtcacgagagataaataaaaacatttacc
                     t"
                     /listShort="S168, trnS-Asn, trnS-Ser, trnS-Glu, trnS-Gln,
                     trnS-Lys, trnS-Leu1, trnS-Leu2, S169"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     downshifts      complement(510215)
                     /Source="Nicolas_upshifts"
                     /id="D227"
                     /incds=0
                     /nref=1
                     /ntot=28
                     /MaxReadThrough="2.50342"
                     /MaxDrop="3.97305"
                     /score="8.78044068"
                     /energy="-9.2"
                     /TU="NA"
                     /idTUdmin="U381"
                     /TUdmin=704
                     /isTUend="FALSE"
                     /label="downshifts"
     tRNA            510271..510345
                     /gene="trnS-Asn"
                     /locus_tag="BSU_tRNA_45"
                     /product="tRNA-Asn"
                     /inference="profile:tRNAscan:1.23"
                     /note="transfer RNA-Asn(GUU); Evidence 2a: Function from
                     experimental evidences in other organisms; Product type n:
                     RNA"
                     /function="16.2: Construct biomass (Anabolism)"
                     /label="trnS-Asn tRNA"
     gene            510271..510345
                     /gene="trnS-Asn"
                     /locus_tag="BSU_tRNA_45"
                     /label="trnS-Asn gene"
     tRNA            510350..510440
                     /gene="trnS-Ser"
                     /locus_tag="BSU_tRNA_46"
                     /product="tRNA-Ser"
                     /inference="profile:tRNAscan:1.23"
                     /note="transfer RNA-Ser(GCU); Evidence 2a: Function from
                     experimental evidences in other organisms; Product type n:
                     RNA"
                     /function="16.2: Construct biomass (Anabolism)"
                     /label="trnS-Ser tRNA"
     gene            510350..510440
                     /gene="trnS-Ser"
                     /locus_tag="BSU_tRNA_46"
                     /label="trnS-Ser gene"
     tRNA            510470..510541
                     /gene="trnS-Glu"
                     /locus_tag="BSU_tRNA_47"
                     /product="tRNA-Glu"
                     /inference="profile:tRNAscan:1.23"
                     /note="Evidence 2a: Function from experimental evidences
                     in other organisms; Product type n: RNA"
                     /function="16.2: Construct biomass (Anabolism)"
                     /label="trnS-Glu tRNA"
     gene            510470..510541
                     /gene="trnS-Glu"
                     /locus_tag="BSU_tRNA_47"
                     /label="trnS-Glu gene"
     tRNA            510553..510627
                     /gene="trnS-Gln"
                     /locus_tag="BSU_tRNA_48"
                     /product="tRNA-Gln"
                     /inference="profile:tRNAscan:1.23"
                     /note="transfer RNA-Gln(UUG); Evidence 2a: Function from
                     experimental evidences in other organisms; Product type n:
                     RNA"
                     /function="16.2: Construct biomass (Anabolism)"
                     /label="trnS-Gln tRNA"
     gene            510553..510627
                     /gene="trnS-Gln"
                     /locus_tag="BSU_tRNA_48"
                     /label="trnS-Gln gene"
     tRNA            510654..510729
                     /gene="trnS-Lys"
                     /locus_tag="BSU_tRNA_49"
                     /product="tRNA-Lys"
                     /inference="profile:tRNAscan:1.23"
                     /note="transfer RNA-Lys(UUU); Evidence 2a: Function from
                     experimental evidences in other organisms; Product type n:
                     RNA"
                     /function="16.2: Construct biomass (Anabolism)"
                     /label="trnS-Lys tRNA"
     gene            510654..510729
                     /gene="trnS-Lys"
                     /locus_tag="BSU_tRNA_49"
                     /label="trnS-Lys gene"
     tRNA            510741..510822
                     /gene="trnS-Leu1"
                     /locus_tag="BSU_tRNA_50"
                     /product="tRNA-Leu"
                     /inference="profile:tRNAscan:1.23"
                     /note="transfer RNA-Leu(UAG); Evidence 2a: Function from
                     experimental evidences in other organisms; Product type n:
                     RNA"
                     /function="16.2: Construct biomass (Anabolism)"
                     /label="trnS-Leu1 tRNA"
     gene            510741..510822
                     /gene="trnS-Leu1"
                     /locus_tag="BSU_tRNA_50"
                     /label="trnS-Leu1 gene"
     downshifts      510887
                     /Source="Nicolas_upshifts"
                     /id="D228"
                     /incds=0
                     /nref=3
                     /ntot=136
                     /MaxReadThrough="6.94232"
                     /MaxDrop="3.5424"
                     /score="34.987622"
                     /energy="-13.7"
                     /TU="U380"
                     /idTUdmin="U378"
                     /TUdmin=0
                     /isTUend="TRUE"
                     /label="downshifts"
     tRNA            510903..>510988
                     /gene="trnS-Leu2"
                     /locus_tag="BSU_tRNA_51"
                     /product="tRNA-Leu"
                     /inference="profile:tRNAscan:1.23"
                     /note="transfer RNA-Leu (GAG); Evidence 2a: Function from
                     experimental evidences in other organisms; Product type n:
                     RNA"
                     /function="16.2: Construct biomass (Anabolism)"
                     /label="trnS-Leu2 tRNA"
     gene            510903..>510988
                     /gene="trnS-Leu2"
                     /locus_tag="BSU_tRNA_51"
                     /modified_by="User"
                     /label="trnS-Leu2 gene"
     SCAR            510988..510989
                     /note="deletion occured in betwen marked nucleotides"
                     /created_by="User"
                     /modified_by="User"
                     /label="Delta6_2"
     S_feature       complement(<510989..511295)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_549923_550239_c"
                     /HighExp="Diami, dia15, dia5, HPh, Etha, H2O2, Cold, LPh,
                     C90, Paraq"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.999"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /modified_by="User"
                     /label="S175"
     downshifts      511008
                     /Source="Nicolas_upshifts"
                     /id="D238"
                     /incds=0
                     /nref=3
                     /ntot=115
                     /MaxReadThrough="0.144629999999999"
                     /MaxDrop="3.58923"
                     /score="4.45688042"
                     /energy="-12.2"
                     /TU="NA"
                     /idTUdmin="U389"
                     /TUdmin=84
                     /isTUend="FALSE"
                     /label="downshifts"
     downshifts      complement(511040)
                     /Source="Nicolas_upshifts"
                     /id="D239"
                     /incds=0
                     /nref=3
                     /ntot=21
                     /MaxReadThrough="2.31925"
                     /MaxDrop="3.67068"
                     /score="-2.66780619"
                     /energy="-18.7"
                     /TU="NA"
                     /idTUdmin="U391"
                     /TUdmin=0
                     /isTUend="TRUE"
                     /label="downshifts"
     CDS             complement(511296..512315)
                     /gene="yddN"
                     /locus_tag="BSU_05040"
                     /old_locus_tag="BSU05040"
                     /EC_number="1.14.14.-"
                     /function="16.8: Protect"
                     /function="16.11: Scavenge (Catabolism)"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 9836433; Product type
                     e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative alkanal monooxygenase"
                     /protein_id="NP_388385.1"
                     /db_xref="EnsemblGenomes-Gn:BSU05040"
                     /db_xref="EnsemblGenomes-Tr:CAB12311"
                     /db_xref="GOA:P96651"
                     /db_xref="InterPro:IPR011251"
                     /db_xref="InterPro:IPR019949"
                     /db_xref="InterPro:IPR036661"
                     /db_xref="SubtiList:BG12121"
                     /db_xref="UniProtKB/Swiss-Prot:P96651"
                     /translation="MKKFDISVLSVAPLRQGETMKQGIDSAVSLAKAVDNMGYKRIWF
                     AEHHNHDAYASAATVSIVQHILANTKDIRVGSGGIMLPNHSPLIVAEQFGTLETLYPN
                     RVDLALGRAPGTDQKTADVIRRSNHNGVFFFEREVNDILRFVGDKSVQGEVRAYPGIG
                     THVPVFVLGSSTDSAEIAAKLGLPYAFGAQFSPHSMEEALSIYRENFQPSSYLQEPYV
                     IACINVIAAESIDEASFISASHLQVYIDIYTNNLSKLIPPTENFLESLSQFELEILHS
                     RLGYTIMGDRETIRRELIDFQQMYHADELIVLSNIYELSKEIQSYEILKQVVDELFKK
                     RMEQL*"
                     /label="yddN CDS"
     gene            complement(511296..512315)
                     /gene="yddN"
                     /locus_tag="BSU_05040"
                     /old_locus_tag="BSU05040"
                     /label="yddN gene"
     promotor_-10    complement(511991..512010)
                     /Source="Nicolas_upshift_promotors"
                     /id="U391"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.983016983016983"
                     /psig="0.999000999001"
                     /xcortree=1980
                     /SigmaFactorBS="ttccccattaatcgtagcggagcaatttggaaCACTTGAAac
                     attatatccaaaTCGTGTAGATTTGGCATTAGgacgcgcacccggaacggatcaaaaa
                     a"
                     /listShort="S175"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(512004)
                     /Source="Nicolas_upshifts"
                     /id="U391"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.983016983016983"
                     /psig="0.999000999001"
                     /xcortree=1980
                     /SigmaFactorBS="ttccccattaatcgtagcggagcaatttggaaCACTTGAAac
                     attatatccaaaTCGTGTAGATTTGGCATTAGgacgcgcacccggaacggatcaaaaa
                     a"
                     /listShort="S175"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(512025..512032)
                     /Source="Nicolas_upshift_promotors"
                     /id="U391"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.983016983016983"
                     /psig="0.999000999001"
                     /xcortree=1980
                     /SigmaFactorBS="ttccccattaatcgtagcggagcaatttggaaCACTTGAAac
                     attatatccaaaTCGTGTAGATTTGGCATTAGgacgcgcacccggaacggatcaaaaa
                     a"
                     /listShort="S175"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-35    512104..512108
                     /Source="Nicolas_upshift_promotors"
                     /id="U392"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.994005994005994"
                     /psig=1
                     /xcortree=2543
                     /SigmaFactorBS="ttggcaacataataccccctgaacctacgcgaatgTCTTTtg
                     tatttgctaatataTGTTGTACAATTGATACGGTtgctgcacttgcataagcgtcgtg
                     a"
                     /listShort="S176, lrpA, S177"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    512125..512144
                     /Source="Nicolas_upshift_promotors"
                     /id="U392"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.994005994005994"
                     /psig=1
                     /xcortree=2543
                     /SigmaFactorBS="ttggcaacataataccccctgaacctacgcgaatgTCTTTtg
                     tatttgctaatataTGTTGTACAATTGATACGGTtgctgcacttgcataagcgtcgtg
                     a"
                     /listShort="S176, lrpA, S177"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        512129
                     /Source="Nicolas_upshifts"
                     /id="U392"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.994005994005994"
                     /psig=1
                     /xcortree=2543
                     /SigmaFactorBS="ttggcaacataataccccctgaacctacgcgaatgTCTTTtg
                     tatttgctaatataTGTTGTACAATTGATACGGTtgctgcacttgcataagcgtcgtg
                     a"
                     /listShort="S176, lrpA, S177"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     S_feature       512130..512574
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_551074_551518"
                     /HighExp="dia15, dia5, H2O2, G180, G135, Paraq, HPh,
                     LBGexp, Lbexp, G150"
                     /AntisenseName="yddN"
                     /AntisenseCor="0.70327972625798696"
                     /AntisenseRegPval="-40.700000000000003"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig=1
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S176"
     CDS             512575..512985
                     /gene="lrpA"
                     /locus_tag="BSU_05050"
                     /old_locus_tag="BSU05050"
                     /function="16.3: Control"
                     /experiment="publication(s) with functional evidences,
                     PMID:11902725, 12675791, 17223133"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 11902725, 12675791,
                     17223133; Product type r: regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator (Lrp/AsnC family)"
                     /protein_id="NP_388386.1"
                     /db_xref="EnsemblGenomes-Gn:BSU05050"
                     /db_xref="EnsemblGenomes-Tr:CAB12312"
                     /db_xref="GOA:P96652"
                     /db_xref="InterPro:IPR000485"
                     /db_xref="InterPro:IPR011008"
                     /db_xref="InterPro:IPR019887"
                     /db_xref="InterPro:IPR019888"
                     /db_xref="InterPro:IPR036388"
                     /db_xref="InterPro:IPR036390"
                     /db_xref="SubtiList:BG12122"
                     /db_xref="UniProtKB/Swiss-Prot:P96652"
                     /translation="MIDEIDKKILDELSKNSRLTMKKLGEKVHLTAPATASRVVKLID
                     NGIIKGCSIEVNQVKLGFSIHAFLNIYIEKIHHQPYLAFIETQDNYVINNYKVSGDGC
                     YLLECKFPSNEVLDQFLNDLNKHANYKVSIVIGK*"
                     /label="lrpA CDS"
     gene            512575..512985
                     /gene="lrpA"
                     /locus_tag="BSU_05050"
                     /old_locus_tag="BSU05050"
                     /label="lrpA gene"
     S_feature       512986..513055
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_551930_551999"
                     /HighExp="dia15, dia5, H2O2, HPh, G180, G135, LBGtran,
                     Paraq, dia0, Lbexp"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig=1
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S177"
     downshifts      513012
                     /Source="Nicolas_upshifts"
                     /id="D240"
                     /incds=0
                     /nref=45
                     /ntot=194
                     /MaxReadThrough="2.99689"
                     /MaxDrop="3.6808"
                     /score="-1.98969146"
                     /energy="-15.7"
                     /TU="U392"
                     /idTUdmin="U392"
                     /TUdmin="-350"
                     /isTUend="FALSE"
                     /label="downshifts"
     CDS             complement(513108..513557)
                     /gene="lrpB"
                     /locus_tag="BSU_05060"
                     /old_locus_tag="BSU05060"
                     /function="16.3: Control"
                     /experiment="publication(s) with functional evidences,
                     PMID:11902725, 12675791, 17223133"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 11902725, 12675791,
                     17223133; Product type r: regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator (Lrp/AsnC family)"
                     /protein_id="NP_388387.1"
                     /db_xref="EnsemblGenomes-Gn:BSU05060"
                     /db_xref="EnsemblGenomes-Tr:CAB12313"
                     /db_xref="GOA:P96653"
                     /db_xref="InterPro:IPR000485"
                     /db_xref="InterPro:IPR011008"
                     /db_xref="InterPro:IPR019887"
                     /db_xref="InterPro:IPR019888"
                     /db_xref="InterPro:IPR036388"
                     /db_xref="InterPro:IPR036390"
                     /db_xref="SubtiList:BG12123"
                     /db_xref="UniProtKB/Swiss-Prot:P96653"
                     /translation="MQIDSIDFQILQLLNKNARIQWKEIGEKIHMTGQAVGNRIKKME
                     DNGIIKAYSIVVDELKMGFSFTAFVFFFMNAYMHDDLLKFIATRNEISEAHRVSGDAC
                     YLLKVTVHSQEVLNHLLNDLLKYGNYQLYLSIKEVKKHYNTSLMSDE*"
                     /label="lrpB CDS"
     gene            complement(513108..513557)
                     /gene="lrpB"
                     /locus_tag="BSU_05060"
                     /old_locus_tag="BSU05060"
                     /label="lrpB gene"
     CDS             513672..514214
                     /gene="yddQ"
                     /locus_tag="BSU_05070"
                     /old_locus_tag="BSU05070"
                     /EC_number="3.-.-.-"
                     /function="16.11: Scavenge (Catabolism)"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative hydrolase"
                     /protein_id="NP_388388.1"
                     /db_xref="EnsemblGenomes-Gn:BSU05070"
                     /db_xref="EnsemblGenomes-Tr:CAB12314"
                     /db_xref="GOA:P96654"
                     /db_xref="InterPro:IPR000868"
                     /db_xref="InterPro:IPR036380"
                     /db_xref="SubtiList:BG12124"
                     /db_xref="UniProtKB/Swiss-Prot:P96654"
                     /translation="MTTALLVIDIQNDYFPNGKMALTNPEKAAQNAAKLLSHFRNTGA
                     PVFHVQHITEGNIAHFFHPNTEGVEIHESVRPLEKETVIVKHMPNSFFNTDLNGKLQE
                     EGVKELVVCGMMSHMCIDATVRSAVEHGYVCQVVEDACATTTLQIEDKIVPAEHVHYA
                     FMAALNGVYATVKTTEAFLK*"
                     /label="yddQ CDS"
     gene            513672..514214
                     /gene="yddQ"
                     /locus_tag="BSU_05070"
                     /old_locus_tag="BSU05070"
                     /label="yddQ gene"
     promotor_-35    514687..514691
                     /Source="Nicolas_upshift_promotors"
                     /id="U393"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.96003996003996"
                     /psig="0.998001998001998"
                     /xcortree=2688
                     /SigmaFactorBS="agtcaaagagttaaaacacttttttttatcTATGTattcgaa
                     cactgctgaTATTATACACTTAACTCTGTcgatctaagacaaataaaaaaagaaagtg
                     a"
                     /listShort="yddR"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    514708..514727
                     /Source="Nicolas_upshift_promotors"
                     /id="U393"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.96003996003996"
                     /psig="0.998001998001998"
                     /xcortree=2688
                     /SigmaFactorBS="agtcaaagagttaaaacacttttttttatcTATGTattcgaa
                     cactgctgaTATTATACACTTAACTCTGTcgatctaagacaaataaaaaaagaaagtg
                     a"
                     /listShort="yddR"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        514717
                     /Source="Nicolas_upshifts"
                     /id="U393"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.96003996003996"
                     /psig="0.998001998001998"
                     /xcortree=2688
                     /SigmaFactorBS="agtcaaagagttaaaacacttttttttatcTATGTattcgaa
                     cactgctgaTATTATACACTTAACTCTGTcgatctaagacaaataaaaaaagaaagtg
                     a"
                     /listShort="yddR"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             514767..515531
                     /gene="yddR"
                     /locus_tag="BSU_05080"
                     /old_locus_tag="BSU05080"
                     /EC_number="3.-.-.-"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative metal-dependent hydrolase"
                     /protein_id="NP_388389.1"
                     /db_xref="EnsemblGenomes-Gn:BSU05080"
                     /db_xref="EnsemblGenomes-Tr:CAB12315"
                     /db_xref="GOA:P96655"
                     /db_xref="InterPro:IPR001279"
                     /db_xref="InterPro:IPR036866"
                     /db_xref="SubtiList:BG12125"
                     /db_xref="UniProtKB/Swiss-Prot:P96655"
                     /translation="MNITQIRNATIVVKYANKKFLIDPMLAEKGTYATFPETIRQDLF
                     NPLVSLPTSIDNILDGVDAVIVTHLHLDHFDDVAKNVLPKNIKMFVQNEADAKEVKAS
                     GFKNVEVLHQDTVFEGIQLVKTKGEHGRGEELLNLMGDVCGLVFKHPSEKVLYVAGDT
                     VWYDAIEDEIHTHQPEIIVVNGGDNQRLDLGSLIMGKEDIYEVHKAAPHAKIISVHME
                     AVNHWTLSREELKNFSKEKGFSSNILVPEDGESYTF*"
                     /label="yddR CDS"
     gene            514767..515531
                     /gene="yddR"
                     /locus_tag="BSU_05080"
                     /old_locus_tag="BSU05080"
                     /label="yddR gene"
     CDS             515725..517035
                     /gene="yddS"
                     /locus_tag="BSU_05090"
                     /old_locus_tag="BSU05090"
                     /function="16.1: Circulate"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 15849754, 16850406;
                     Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="putative permease"
                     /protein_id="NP_388390.1"
                     /db_xref="EnsemblGenomes-Gn:BSU05090"
                     /db_xref="EnsemblGenomes-Tr:CAB12316"
                     /db_xref="GOA:P96656"
                     /db_xref="InterPro:IPR005828"
                     /db_xref="InterPro:IPR011701"
                     /db_xref="InterPro:IPR020846"
                     /db_xref="InterPro:IPR036259"
                     /db_xref="SubtiList:BG12126"
                     /db_xref="UniProtKB/Swiss-Prot:P96656"
                     /translation="MVMTKKDTNISTQQPLWLQGYIDSPEKQNQLYKKTLKILIFSQI
                     FGGAGLGAGITVGALLAQDMIGSENVAGIPTALFTFGSAVAALLIGASSQRFGRRAGL
                     AGGFLIGGLGAIGVIIAALINSVALLFVSLLIYGAGMASNLQVRYAGTDLANEKQRAT
                     AASMALVSTTLGAVVGPNLVNTMGEFADSIGVPNLAGPFIMSGAAFIIAGIILLIFLR
                     PDPLFVSTAIANAEKKDDKVQIGGSLKNPAIDKKGIMVGAVIMILAQLIMTAIMTMTP
                     VHMGHHGHGLSEVGLVIGLHIAAMYLPSPLTGLLVDKFGRTTMAIASGATLLAAGLVA
                     AIAPADSLSLLILALVLLGVGWNFGLLTGTALIIDSTHPSLRAKTQGTFDVLLALSGA
                     AGGALSGMVVAHSSYTILSISGAVLSLLLIPVVIWYFRRIQEKA*"
                     /label="yddS CDS"
     gene            515725..517035
                     /gene="yddS"
                     /locus_tag="BSU_05090"
                     /old_locus_tag="BSU05090"
                     /label="yddS gene"
     S_feature       517058..517617
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_556002_556561"
                     /HighExp="S8, C30, Cold, BMM, C90, GM 25, MG 15, M/G, LPh,
                     S7"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="NA"
                     /TUshortPSig="NA"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S178"
     CDS             517618..517794
                     /gene="ydzM"
                     /locus_tag="BSU_05099"
                     /old_locus_tag="BSU05099"
                     /function="16.5: Explore"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms; Product type h: extrachromosomal origin"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved phage protein of unknown function"
                     /protein_id="YP_003097682.1"
                     /db_xref="EnsemblGenomes-Gn:BSU05099"
                     /db_xref="EnsemblGenomes-Tr:CAX52553"
                     /db_xref="GOA:Q9K3A9"
                     /db_xref="UniProtKB/Swiss-Prot:Q9K3A9"
                     /translation="MNNKKNIFDIVMYIIFGVLSLFLVAKTDYGTGVLVFVAILYLAV
                     IAYKIKQVFSNSDS*"
                     /label="ydzM CDS"
     gene            517618..517794
                     /gene="ydzM"
                     /locus_tag="BSU_05099"
                     /old_locus_tag="BSU05099"
                     /label="ydzM gene"
     CDS             517819..518505
                     /gene="yddT"
                     /locus_tag="BSU_05100"
                     /old_locus_tag="BSU05100"
                     /function="16.5: Explore"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; Product type h : extrachromosomal
                     origin"
                     /codon_start=1
                     /transl_table=11
                     /product="putative exported phage protein"
                     /protein_id="NP_388391.1"
                     /db_xref="EnsemblGenomes-Gn:BSU05100"
                     /db_xref="EnsemblGenomes-Tr:CAB12317"
                     /db_xref="SubtiList:BG12127"
                     /db_xref="UniProtKB/Swiss-Prot:P96657"
                     /translation="MRKKRVITCVMAASLTLGSLLPAGYASAKEDSKTTPSYEELALH
                     YKMKSEKISSNGKLVEIEYVSGNETHKVQMNGNNHTVKVDGIEQKGLNFEYDENVAKR
                     TNYENNNLKSNEFTTQAAKPKKGYHYVGTLSGHTKAAKNALSVTMSLVGIVPGLGWGS
                     KAATILFSYWAKEQIPDAYYKYDLYEKGAMTDSWYQYATVQFFEDKAHKKKMGKPWTS
                     TPAKVDLPNS*"
                     /label="yddT CDS"
     gene            517819..518505
                     /gene="yddT"
                     /locus_tag="BSU_05100"
                     /old_locus_tag="BSU05100"
                     /label="yddT gene"
     promotor_-35    518847..518851
                     /Source="Nicolas_upshift_promotors"
                     /id="U394"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.383616383616384"
                     /psig="0.999000999001"
                     /xcortree=2778
                     /SigmaFactorBS="gaaaggtttaagattagatattgaaaaattttaTATATtttc
                     aataaaatacTGGTACTATAATAAATGTATacagattgtatggagatgtaattaatta
                     a"
                     /listShort="ydzN, ydeA"
                     /listLong="S179, cspC"
                     /label="promotor_-35"
     promotor_-10    518866..518885
                     /Source="Nicolas_upshift_promotors"
                     /id="U394"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.383616383616384"
                     /psig="0.999000999001"
                     /xcortree=2778
                     /SigmaFactorBS="gaaaggtttaagattagatattgaaaaattttaTATATtttc
                     aataaaatacTGGTACTATAATAAATGTATacagattgtatggagatgtaattaatta
                     a"
                     /listShort="ydzN, ydeA"
                     /listLong="S179, cspC"
                     /label="promotor_-10"
     upshifts        518874
                     /Source="Nicolas_upshifts"
                     /id="U394"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.383616383616384"
                     /psig="0.999000999001"
                     /xcortree=2778
                     /SigmaFactorBS="gaaaggtttaagattagatattgaaaaattttaTATATtttc
                     aataaaatacTGGTACTATAATAAATGTATacagattgtatggagatgtaattaatta
                     a"
                     /listShort="ydzN, ydeA"
                     /listLong="S179, cspC"
                     /label="upshifts"
     Polymorphism    join(518921,518923)
                     /Source="geneious"
                     /ID="SNP_BsDelta6_557866_557865"
                     /Polymorphism_Type="Insertion (tandem repeat)"
                     /note="SNP between marked nucleotides"
                     /strain="Bacillus subtilis Delta6"
                     /Length=0
                     /Amino_Acid_Change
                     /CDS_Position
                     /Change="(T)5 -> (T)6"
                     /Codon_Change
                     /Coverage=35
                     /locus_tag
                     /Protein_Effect
                     /Reference_Frequency
                     /Reference_Nucleotides
                     /Variant_Nucleotides="T"
                     /Variant_P_Value="3.2e-123"
                     /Variant_Raw_Frequency=35
                     /comment="ydzN_translation_signal_variant"
                     /modified_by="User"
                     /
                     /label="Polymorphism_Delta6"
     CDS             518930..519115
                     /gene="ydzN"
                     /locus_tag="BSU_05109"
                     /old_locus_tag="BSU05109"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 5: Unknown function"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_003097683.1"
                     /db_xref="EnsemblGenomes-Gn:BSU05109"
                     /db_xref="EnsemblGenomes-Tr:CAX52554"
                     /db_xref="GOA:C0H3V7"
                     /db_xref="UniProtKB/Swiss-Prot:C0H3V7"
                     /translation="MRWSKWFNVFCIVALGSIYGYKLFTNQEVSTTRLIIASVIVLWN
                     IVGLFSKESVKQAQQAN*"
                     /label="ydzN CDS"
     gene            518930..519115
                     /gene="ydzN"
                     /locus_tag="BSU_05109"
                     /old_locus_tag="BSU05109"
                     /label="ydzN gene"
     downshifts      519114
                     /Source="Nicolas_upshifts"
                     /id="D241"
                     /incds=0
                     /nref=9
                     /ntot=125
                     /MaxReadThrough="3.39785"
                     /MaxDrop="3.7067"
                     /score="-6.31330934"
                     /energy="-12.8"
                     /TU="U394"
                     /idTUdmin="U394"
                     /TUdmin="-1068"
                     /isTUend="FALSE"
                     /label="downshifts"
     CDS             519465..520058
                     /gene="sufLC"
                     /locus_tag="BSU_05110"
                     /old_locus_tag="BSU05110"
                     /experiment="publication(s) with functional evidences,
                     PMID:24330391"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 24330391; Product type e:
                     enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="glyoxalase III homolog, deglycase"
                     /protein_id="NP_388392.1"
                     /db_xref="EnsemblGenomes-Gn:BSU05110"
                     /db_xref="EnsemblGenomes-Tr:CAB12318"
                     /db_xref="GOA:P96658"
                     /db_xref="InterPro:IPR002818"
                     /db_xref="InterPro:IPR029062"
                     /db_xref="PDB:3F5D"
                     /db_xref="SubtiList:BG12128"
                     /db_xref="UniProtKB/Swiss-Prot:P96658"
                     /translation="MKKALFLILDQYADWEGVYLASALNQREDWSVHTVSLDPIVSSI
                     GGFKTSVDYIIGLEPANFNLLVMIGGDSWSNDNKKLLHFVKTAFQKNIPIAAICGAVD
                     FLAKNGLLNNHSHTGNFVYLWKDYKQYKPISSFVEKQAVRDKNLVTANGTAPIEFTNL
                     ILEMIDFDTPENIEKMMYMNRYGFYHFCDKYGNPFVD*"
                     /label="sufLC CDS"
     gene            519465..520058
                     /gene="sufLC"
                     /locus_tag="BSU_05110"
                     /old_locus_tag="BSU05110"
                     /label="sufLC gene"
     promotor_-35    520171..520178
                     /Source="Nicolas_upshift_promotors"
                     /id="U395"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.561438561438561"
                     /psig=1
                     /xcortree=3090
                     /SigmaFactorBS="aagtttaacaaataatgccatcaatattAATTTGCAgttatt
                     tccgattCCTGATATAATAAAGAAGAAttatttttgttcggtgtaaaggatagtatga
                     a"
                     /listShort="S179, cspC"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    520192..520211
                     /Source="Nicolas_upshift_promotors"
                     /id="U395"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.561438561438561"
                     /psig=1
                     /xcortree=3090
                     /SigmaFactorBS="aagtttaacaaataatgccatcaatattAATTTGCAgttatt
                     tccgattCCTGATATAATAAAGAAGAAttatttttgttcggtgtaaaggatagtatga
                     a"
                     /listShort="S179, cspC"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     S_feature       520203..520320
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_559146_559263"
                     /HighExp="B60, LoTm, T5.0H, T3.30H, M9-stat, BI, BC, C90,
                     T3.0H, Cold"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig=1
                     /TUlongSig="SigA"
                     /TUlongPSig="0.999"
                     /label="S179"
     upshifts        520203
                     /Source="Nicolas_upshifts"
                     /id="U395"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.561438561438561"
                     /psig=1
                     /xcortree=3090
                     /SigmaFactorBS="aagtttaacaaataatgccatcaatattAATTTGCAgttatt
                     tccgattCCTGATATAATAAAGAAGAAttatttttgttcggtgtaaaggatagtatga
                     a"
                     /listShort="S179, cspC"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     downshifts      complement(520238)
                     /Source="Nicolas_upshifts"
                     /id="D242"
                     /incds=0
                     /nref=10
                     /ntot=93
                     /MaxReadThrough="1.86628"
                     /MaxDrop="4.19111"
                     /score="25.1917407"
                     /energy="-12.9"
                     /TU="NA"
                     /idTUdmin="U396"
                     /TUdmin=328
                     /isTUend="FALSE"
                     /label="downshifts"
     CDS             520321..520521
                     /gene="cspC"
                     /locus_tag="BSU_05120"
                     /old_locus_tag="BSU05120"
                     /function="16.6: Maintain"
                     /function="16.8: Protect"
                     /experiment="publication(s) with functional evidences,
                     PMID:9379903, 9914312, 9920884, 10517332, 11591689,
                     12427936"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 9379903, 9914312,
                     9920884, 10517332, 11591689, 12427936; Product type f :
                     factor"
                     /codon_start=1
                     /transl_table=11
                     /product="cold-shock protein"
                     /protein_id="NP_388393.1"
                     /db_xref="EnsemblGenomes-Gn:BSU05120"
                     /db_xref="EnsemblGenomes-Tr:CAB12319"
                     /db_xref="GOA:P39158"
                     /db_xref="InterPro:IPR002059"
                     /db_xref="InterPro:IPR011129"
                     /db_xref="InterPro:IPR012156"
                     /db_xref="InterPro:IPR012340"
                     /db_xref="InterPro:IPR019844"
                     /db_xref="SubtiList:BG11024"
                     /db_xref="UniProtKB/Swiss-Prot:P39158"
                     /translation="MEQGTVKWFNAEKGFGFIERENGDDVFVHFSAIQSDGFKSLDEG
                     QKVSFDVEQGARGAQAANVQKA*"
                     /label="cspC CDS"
     gene            520321..520521
                     /gene="cspC"
                     /locus_tag="BSU_05120"
                     /old_locus_tag="BSU05120"
                     /label="cspC gene"
     S_feature       complement(520419..521207)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_559362_560150_c"
                     /HighExp="LoTm, B60, Cold, M9-stat, LPhT, B36, Sw, BC, S8,
                     Salt"
                     /AntisenseName="cspC"
                     /AntisenseCor="0.39074308987975698"
                     /AntisenseRegPval="-10.5"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig=1
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S180"
     downshifts      520424
                     /Source="Nicolas_upshifts"
                     /id="D243"
                     /incds=1
                     /nref=19
                     /ntot=179
                     /MaxReadThrough="8.05368"
                     /MaxDrop="3.4464"
                     /score="27.3387234"
                     /energy="-11.3"
                     /TU="U395"
                     /idTUdmin="U394"
                     /TUdmin=242
                     /isTUend="FALSE"
                     /label="downshifts"
     downshifts      520525
                     /Source="Nicolas_upshifts"
                     /id="D244"
                     /incds=0
                     /nref=65
                     /ntot=246
                     /MaxReadThrough="5.78621"
                     /MaxDrop="5.83905"
                     /score="27.3387234"
                     /energy="-11.3"
                     /TU="U395"
                     /idTUdmin="U394"
                     /TUdmin=343
                     /isTUend="FALSE"
                     /label="downshifts"
     misc_RNA        complement(520589..520667)
                     /gene="sncZ"
                     /locus_tag="BSU_misc_RNA_66"
                     /product="putative small conserved untranslated RNA"
                     /experiment="publication(s) with functional evidences,
                     PMID:20525796"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 20525796; Product type n:
                     RNA"
                     /label="sncZ RNA"
     gene            complement(520589..520667)
                     /gene="sncZ"
                     /locus_tag="BSU_misc_RNA_66"
                     /label="sncZ gene"
     CDS             complement(521208..521669)
                     /gene="cdnL"
                     /locus_tag="BSU_05130"
                     /old_locus_tag="BSU05130"
                     /function="16.3: Control"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 1c: Function from experimental evidences
                     in the studied genus; PubMedId: 26849219; Product type r :
                     regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator for repair and
                     outgrowth of heat damaged spores"
                     /protein_id="NP_388394.1"
                     /db_xref="EnsemblGenomes-Gn:BSU05130"
                     /db_xref="EnsemblGenomes-Tr:CAB12320"
                     /db_xref="InterPro:IPR003711"
                     /db_xref="InterPro:IPR036101"
                     /db_xref="SubtiList:BG12129"
                     /db_xref="UniProtKB/Swiss-Prot:P96659"
                     /translation="MFQIGDNIVYPMHGAGIIEAIEEKEFLEEKQQYYVIRMSISNMT
                     VMIPTSKILSSNIRPVTDILALKHIMHIFQHGESDRLLPWKQRYKINTDKIKTGEIQE
                     GAEVVRDLMRMKKEKALNASEKKMLDNAYEFLISELEVIKGITEKQIKSFG*"
                     /label="cdnL CDS"
     gene            complement(521208..521669)
                     /gene="cdnL"
                     /locus_tag="BSU_05130"
                     /old_locus_tag="BSU05130"
                     /label="cdnL gene"
     S_feature       521678..522223
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_560621_561166"
                     /HighExp="Cold, G135, S8, G180, LoTm, S7, G150, HPh,
                     Paraq, Oxctl"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="NA"
                     /TUshortPSig="NA"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S181"
     upshifts        complement(521721)
                     /Source="Nicolas_upshifts"
                     /id="U396"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.756243756243756"
                     /psig=1
                     /xcortree=427
                     /SigmaFactorBS="ttcaaaaaagtTATTGACAtcaaaaattcgatcaTGTTATTA
                     TTAAAATTTTGAtattacacctccatatatggtaatcttaagaaggataccatatatg
                     g"
                     /listShort="ydeB, S180"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-10    complement(521728..521747)
                     /Source="Nicolas_upshift_promotors"
                     /id="U396"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.756243756243756"
                     /psig=1
                     /xcortree=427
                     /SigmaFactorBS="ttcaaaaaagtTATTGACAtcaaaaattcgatcaTGTTATTA
                     TTAAAATTTTGAtattacacctccatatatggtaatcttaagaaggataccatatatg
                     g"
                     /listShort="ydeB, S180"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     promotor_-35    complement(521763..521770)
                     /Source="Nicolas_upshift_promotors"
                     /id="U396"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.756243756243756"
                     /psig=1
                     /xcortree=427
                     /SigmaFactorBS="ttcaaaaaagtTATTGACAtcaaaaattcgatcaTGTTATTA
                     TTAAAATTTTGAtattacacctccatatatggtaatcttaagaaggataccatatatg
                     g"
                     /listShort="ydeB, S180"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     downshifts      522190
                     /Source="Nicolas_upshifts"
                     /id="D245"
                     /incds=0
                     /nref=7
                     /ntot=141
                     /MaxReadThrough="0.289110000000001"
                     /MaxDrop="4.3701"
                     /score="26.1823933"
                     /energy="-9.5"
                     /TU="NA"
                     /idTUdmin="U395"
                     /TUdmin=864
                     /isTUend="FALSE"
                     /label="downshifts"
     CDS             complement(522237..522473)
                     /gene="ydzE"
                     /locus_tag="BSU_05140"
                     /old_locus_tag="BSU05140"
                     /function="16.1: Circulate"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="putative permease"
                     /protein_id="NP_388395.1"
                     /db_xref="EnsemblGenomes-Gn:BSU05140"
                     /db_xref="EnsemblGenomes-Tr:CAB12321"
                     /db_xref="GOA:O31493"
                     /db_xref="InterPro:IPR000620"
                     /db_xref="SubtiList:BG12808"
                     /db_xref="UniProtKB/Swiss-Prot:O31493"
                     /translation="MYLGIVSTACAFLLWNHGLQLLNASSGGLFFFFQPLVGTLLGWI
                     LLGEQIGGTFWIGSFLILSGVLLVIKEKEKEVKS*"
                     /label="ydzE CDS"
     gene            complement(522237..522473)
                     /gene="ydzE"
                     /locus_tag="BSU_05140"
                     /old_locus_tag="BSU05140"
                     /label="ydzE gene"
     CDS             complement(522571..523446)
                     /gene="ydeC"
                     /locus_tag="BSU_05150"
                     /old_locus_tag="BSU05150"
                     /function="16.3: Control"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 10704478; Product type
                     r: regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="putative transcriptional regulator (AraC/XylS
                     family)"
                     /protein_id="NP_388396.1"
                     /db_xref="EnsemblGenomes-Gn:BSU05150"
                     /db_xref="EnsemblGenomes-Tr:CAB12322"
                     /db_xref="GOA:P96660"
                     /db_xref="InterPro:IPR003313"
                     /db_xref="InterPro:IPR009057"
                     /db_xref="InterPro:IPR014710"
                     /db_xref="InterPro:IPR018060"
                     /db_xref="InterPro:IPR018062"
                     /db_xref="InterPro:IPR020449"
                     /db_xref="SubtiList:BG12130"
                     /db_xref="UniProtKB/Swiss-Prot:P96660"
                     /translation="MKNFVIDQNLKELTEHRTVELPVACYKTTINQNINGYIPLHWHD
                     EIQFVLILKGIALFQINEEKIEVHEGDGLFINSGYLHMAEEKEGSDCTYICLNVSPHF
                     VLSQELYSSYVQPYMFSTNLPYLFLAGNQQWAKNILDAVKKINQLIQQKTSLYEIDIT
                     MQLTLMWKNLVVNGFQLEYDQSEMIKSHRMKQMLNWIHLHYVEKITLEDIAKAGQLSR
                     SECCRYFKRMLNKTPLRYVMDYRIQKSLLLLQHPESNVTEVSYQVGFNSTSYFISKFQ
                     QAMNMTPLSYKKMNS*"
                     /label="ydeC CDS"
     gene            complement(522571..523446)
                     /gene="ydeC"
                     /locus_tag="BSU_05150"
                     /old_locus_tag="BSU05150"
                     /label="ydeC gene"
     CDS             523559..524518
                     /gene="ydeD"
                     /locus_tag="BSU_05160"
                     /old_locus_tag="BSU05160"
                     /function="16.1: Circulate"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 15849754, 16850406;
                     Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="putative permease"
                     /protein_id="NP_388397.1"
                     /db_xref="EnsemblGenomes-Gn:BSU05160"
                     /db_xref="EnsemblGenomes-Tr:CAB12323"
                     /db_xref="GOA:P96661"
                     /db_xref="InterPro:IPR000620"
                     /db_xref="SubtiList:BG12131"
                     /db_xref="UniProtKB/Swiss-Prot:P96661"
                     /translation="MNTSNRRMGLFYVITGATCWGIGGTVAKKLFQEYQIDVNWLVTT
                     RLLTAGMLLLMLQLFRKDRSQVIEVWKHKASAGQLLIFGLLGMLAVQYTYMASIQHGN
                     AAVATLLQYLSPVIVIIYTLLRKQTVLTKQDIITVVLALVGCFFLLTNGSMSQLSVPA
                     AAVVWGVLSGFAAAFYTLYAVGLLNKFDSLVVVGWAMIIGGFALGFIHPPWQLDFQRL
                     TAEAYAYILFVILFGTMIAFWFFIKSLESLSPKETSLLGSLEPLSAVVTTVVWLKAPF
                     GSFQWIGAICIIGITLILALHKEPSMESEKSILKIRNHANRDI*"
                     /label="ydeD CDS"
     gene            523559..524518
                     /gene="ydeD"
                     /locus_tag="BSU_05160"
                     /old_locus_tag="BSU05160"
                     /label="ydeD gene"
     upshifts        complement(523580)
                     /Source="Nicolas_upshifts"
                     /id="U397"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.555444555444555"
                     /psig="0.808191808191808"
                     /xcortree=1969
                     /SigmaFactorBS="tggctactgtgcctccaatcccccaacatgtcgccccTGTGA
                     TAACATAGAACAATCccattcttctattggaagtattcatacatgactcctcactaat
                     a"
                     /listShort="ydeC"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     misc_feature    complement(523584..523603)
                     /Source="Nicolas_upshift_promotors"
                     /id="U397"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.555444555444555"
                     /psig="0.808191808191808"
                     /xcortree=1969
                     /SigmaFactorBS="tggctactgtgcctccaatcccccaacatgtcgccccTGTGA
                     TAACATAGAACAATCccattcttctattggaagtattcatacatgactcctcactaat
                     a"
                     /listShort="ydeC"
                     /GFF_Attribute="listLong"
                     /label="promotor_single_box"
                     /note="Geneious type: promotor_single_box"
     CDS             complement(524671..525543)
                     /gene="ydeE"
                     /locus_tag="BSU_05170"
                     /old_locus_tag="BSU05170"
                     /function="16.3: Control"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; Product type r: regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="putative transcriptional regulator (AraC/XylS
                     family)"
                     /protein_id="NP_388398.1"
                     /db_xref="EnsemblGenomes-Gn:BSU05170"
                     /db_xref="EnsemblGenomes-Tr:CAB12324"
                     /db_xref="GOA:P96662"
                     /db_xref="InterPro:IPR009057"
                     /db_xref="InterPro:IPR010499"
                     /db_xref="InterPro:IPR011256"
                     /db_xref="InterPro:IPR018060"
                     /db_xref="InterPro:IPR018062"
                     /db_xref="InterPro:IPR020449"
                     /db_xref="InterPro:IPR029442"
                     /db_xref="SubtiList:BG12132"
                     /db_xref="UniProtKB/Swiss-Prot:P96662"
                     /translation="MDLLKSMNRALKYIEENLTNDIDFQEAAKLAFCSEYHFKRMFSF
                     LAGISLSEYIRRRRLTLAAFELKDSNVKVIDIAIKYGYNSPDSFARAFQNLHGINPSK
                     ARFNGHSLKAYPRMTFQLTIKGGNEMNYRIEEKEAFRIVGIKKRVPIIFKGINPEIAS
                     MWESLDEKAINKLKELSNVAPSGLISASTNFSEGRTEENGELDHYIGAATTKRCPDNF
                     SRLEVPASTWAVFESIGPFPDTLQEVWGRIYSEWFPSSNYEQIEGPEILWNEHKDVTS
                     PSFKSEIWIPITKK*"
                     /label="ydeE CDS"
     gene            complement(524671..525543)
                     /gene="ydeE"
                     /locus_tag="BSU_05170"
                     /old_locus_tag="BSU05170"
                     /label="ydeE gene"
     promotor_-10    complement(525636..525641)
                     /Source="Nicolas_upshift_promotors"
                     /id="U398"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="Sig-"
                     /pcomp="0.380619380619381"
                     /psig="0.432567432567433"
                     /xcortree=1464
                     /SigmaFactorBS="cttttattgatgcctttttatgaacagcatgcttcaataaaa
                     cctgtacaaatacaagtgaatcACtTACTTTatttcatataagtcatcctgcaaaact
                     g"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     promotor_-35    complement(525643..525644)
                     /Source="Nicolas_upshift_promotors"
                     /id="U398"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="Sig-"
                     /pcomp="0.380619380619381"
                     /psig="0.432567432567433"
                     /xcortree=1464
                     /SigmaFactorBS="cttttattgatgcctttttatgaacagcatgcttcaataaaa
                     cctgtacaaatacaagtgaatcACtTACTTTatttcatataagtcatcctgcaaaact
                     g"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     upshifts        complement(525648)
                     /Source="Nicolas_upshifts"
                     /id="U398"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="Sig-"
                     /pcomp="0.380619380619381"
                     /psig="0.432567432567433"
                     /xcortree=1464
                     /SigmaFactorBS="cttttattgatgcctttttatgaacagcatgcttcaataaaa
                     cctgtacaaatacaagtgaatcACtTACTTTatttcatataagtcatcctgcaaaact
                     g"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    525717..525723
                     /Source="Nicolas_upshift_promotors"
                     /id="U399"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.408591408591409"
                     /psig="0.98101898101898"
                     /xcortree=1860
                     /SigmaFactorBS="attgaagcatgctgttcataaaaaggcatcaataaaagaaag
                     ttatAATTGTCttataaacggcacATTCATATAATTGAGTGAAAaaggatgcgtatca
                     t"
                     /listShort="ydeF"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     upshifts        525731
                     /Source="Nicolas_upshifts"
                     /id="U399"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.408591408591409"
                     /psig="0.98101898101898"
                     /xcortree=1860
                     /SigmaFactorBS="attgaagcatgctgttcataaaaaggcatcaataaaagaaag
                     ttatAATTGTCttataaacggcacATTCATATAATTGAGTGAAAaaggatgcgtatca
                     t"
                     /listShort="ydeF"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-10    525737..525756
                     /Source="Nicolas_upshift_promotors"
                     /id="U399"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.408591408591409"
                     /psig="0.98101898101898"
                     /xcortree=1860
                     /SigmaFactorBS="attgaagcatgctgttcataaaaaggcatcaataaaagaaag
                     ttatAATTGTCttataaacggcacATTCATATAATTGAGTGAAAaaggatgcgtatca
                     t"
                     /listShort="ydeF"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     CDS             525770..527158
                     /gene="ydeF"
                     /locus_tag="BSU_05180"
                     /old_locus_tag="BSU05180"
                     /function="16.3: Control"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 15223311, 28348215;
                     Product type r: regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="putative PLP-dependent transcriptional
                     regulator"
                     /protein_id="NP_388399.2"
                     /db_xref="EnsemblGenomes-Gn:BSU05180"
                     /db_xref="EnsemblGenomes-Tr:CAB12325"
                     /db_xref="GOA:P96663"
                     /db_xref="InterPro:IPR000524"
                     /db_xref="InterPro:IPR004839"
                     /db_xref="InterPro:IPR015421"
                     /db_xref="InterPro:IPR015422"
                     /db_xref="InterPro:IPR015424"
                     /db_xref="InterPro:IPR036388"
                     /db_xref="InterPro:IPR036390"
                     /db_xref="SubtiList:BG12133"
                     /db_xref="UniProtKB/Swiss-Prot:P96663"
                     /translation="MPINSFENYPMSWKPSIDKAEKPIYKALAGQLEQDILNGVLLPG
                     TKLPPQRELADYLDLNVSTISKAFKVCELKGLLSATVGSGTFVSYDALSNAYLLEDTK
                     PTHLIEMGAILPDHASYEPLLYQLKNMVHEEDYEKWFSYGRAGESLWQKDAAVKLIQR
                     GGFETSVDHILFANGGQNAIAATLASLCKPGDRIGVDHHTYPGLKTVASLLSVQIVPI
                     KSENDEMSPESLEYACKNENIKGLYLIPDYHNPTTSFMSVENRRMVADIVKKYNLFVI
                     EDASYHLLNKNPLPALASFAPQQVIHIASLSKSLAPGLRLAYVAVPRQYKEPISKALY
                     NLNITVSPLLAELTARTIVSNQFEVLIESHREQTIRRNQLVNRYVAGYTCLGVETGIF
                     RWLLLPGKMSGAEFEELAARLGVQVYAAERFVVGNSCPERAVRVSVCAPKTLEELEQG
                     LMILRRLLDDLT*"
                     /label="ydeF CDS"
     gene            525770..527158
                     /gene="ydeF"
                     /locus_tag="BSU_05180"
                     /old_locus_tag="BSU05180"
                     /label="ydeF gene"
     downshifts      527134
                     /Source="Nicolas_upshifts"
                     /id="D246"
                     /incds=0
                     /nref=2
                     /ntot=61
                     /MaxReadThrough="0.91547"
                     /MaxDrop="3.65963"
                     /score="12.298375"
                     /energy="-12.2"
                     /TU="NA"
                     /idTUdmin="U399"
                     /TUdmin=176
                     /isTUend="FALSE"
                     /label="downshifts"
     CDS             527268..528560
                     /gene="ydeG"
                     /locus_tag="BSU_05190"
                     /old_locus_tag="BSU05190"
                     /function="16.1: Circulate"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 15849754, 16850406;
                     Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="putative permease"
                     /protein_id="NP_388400.1"
                     /db_xref="EnsemblGenomes-Gn:BSU05190"
                     /db_xref="EnsemblGenomes-Tr:CAB12326"
                     /db_xref="GOA:P96664"
                     /db_xref="InterPro:IPR011701"
                     /db_xref="InterPro:IPR020846"
                     /db_xref="InterPro:IPR036259"
                     /db_xref="SubtiList:BG12134"
                     /db_xref="UniProtKB/Swiss-Prot:P96664"
                     /translation="MMLDKDSVKAIDVQTASLQSYISSPEKQKSLYKRTLFVVSISQI
                     FGGAGLAAGVTVGALIAQQMLGTDAFAGLPSALFTLGSAGSALIVGRLSQRYGRRTGL
                     SAGFMIGGLGAIGVIMAAIINSIFLLFISLLIYGAGTATNLQARYAGTDLANHKQRAT
                     AVSITMVFTTFGAVAGPSLVNVMGDFALSIGVPSLAGPFILAAAAYMLAGVVLFIMLR
                     PDPLVIARTIEAANEEPGDKGHLAATEHTENKKGIIVGATVMVLTQIVMVAIMTMTPV
                     HMRHHGHDLGAVGLVIGFHIGAMYLPSLVTGVLVDRLGRTAMAISSGTTLLLAGVIAA
                     FAPGESMILLVIALSLLGLGWNFGLISGTALIVDSTDTATRAKTQGTVDVLIALSGAA
                     GGALSGMIVAGSSYLALSLIGGILSLLLIPVVVWSRGR*"
                     /label="ydeG CDS"
     gene            527268..528560
                     /gene="ydeG"
                     /locus_tag="BSU_05190"
                     /old_locus_tag="BSU05190"
                     /label="ydeG gene"
     promotor_-35    528569..528575
                     /Source="Nicolas_upshift_promotors"
                     /id="U400"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.737262737262737"
                     /psig=1
                     /xcortree=2927
                     /SigmaFactorBS="gtggtatggtctaggggccgctaaagggtaggATTGTTTaat
                     ttacattaattTGTTATATTGTTAGATAAAGtatattgcagcatctaatattctaacg
                     a"
                     /listShort="S182, ydeH"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    528590..528609
                     /Source="Nicolas_upshift_promotors"
                     /id="U400"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.737262737262737"
                     /psig=1
                     /xcortree=2927
                     /SigmaFactorBS="gtggtatggtctaggggccgctaaagggtaggATTGTTTaat
                     ttacattaattTGTTATATTGTTAGATAAAGtatattgcagcatctaatattctaacg
                     a"
                     /listShort="S182, ydeH"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        528597
                     /Source="Nicolas_upshifts"
                     /id="U400"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.737262737262737"
                     /psig=1
                     /xcortree=2927
                     /SigmaFactorBS="gtggtatggtctaggggccgctaaagggtaggATTGTTTaat
                     ttacattaattTGTTATATTGTTAGATAAAGtatattgcagcatctaatattctaacg
                     a"
                     /listShort="S182, ydeH"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     S_feature       528608..528718
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_567551_567661"
                     /HighExp="LoTm, T4.0H, T3.30H, T2.30H, T3.0H, T2.0H,
                     T1.30H, T5.0H, T1.0H, T-0.40H"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig=1
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S182"
     CDS             528719..529165
                     /gene="ydeH"
                     /locus_tag="BSU_05200"
                     /old_locus_tag="BSU05200"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 15849754, 16850406;
                     Product type m: membrane component"
                     /codon_start=1
                     /transl_table=11
                     /product="putative integral inner membrane protein"
                     /protein_id="NP_388401.1"
                     /db_xref="EnsemblGenomes-Gn:BSU05200"
                     /db_xref="EnsemblGenomes-Tr:CAB12327"
                     /db_xref="GOA:P96665"
                     /db_xref="SubtiList:BG12135"
                     /db_xref="UniProtKB/Swiss-Prot:P96665"
                     /translation="MNHIKWLSDLKKAGLLALGKGVITLLKRFSLVIVTLMMSIVVVL
                     AAAKESPGDHVISFDEPIILMISIGIVVFLLIPPLVMSFFGNLVVRIISGVYQCFIVF
                     TFLGLIPIGFLIPNGFLTILVSIAGTLVSIASVAVTLCIGKNKKDI*"
                     /label="ydeH CDS"
     gene            528719..529165
                     /gene="ydeH"
                     /locus_tag="BSU_05200"
                     /old_locus_tag="BSU05200"
                     /label="ydeH gene"
     downshifts      529194
                     /Source="Nicolas_upshifts"
                     /id="D247"
                     /incds=0
                     /nref=200
                     /ntot=251
                     /MaxReadThrough="2.56495"
                     /MaxDrop="6.50538"
                     /score="-1.7193297"
                     /energy="-4.5"
                     /TU="NA"
                     /idTUdmin="U400"
                     /TUdmin="-8"
                     /isTUend="TRUE"
                     /label="downshifts"
     promotor_-35    529245..529252
                     /Source="Nicolas_upshift_promotors"
                     /id="U401"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.921078921078921"
                     /psig="0.99100899100899"
                     /xcortree=2390
                     /SigmaFactorBS="tacaaaaagagaaggcttgtgggccttctttttttgtTGTTG
                     CATcatccccactttgaGCTTAATCTATTGAATAATAagagaaggaacctatagaaga
                     a"
                     /listShort="ydeI"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    529267..529286
                     /Source="Nicolas_upshift_promotors"
                     /id="U401"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.921078921078921"
                     /psig="0.99100899100899"
                     /xcortree=2390
                     /SigmaFactorBS="tacaaaaagagaaggcttgtgggccttctttttttgtTGTTG
                     CATcatccccactttgaGCTTAATCTATTGAATAATAagagaaggaacctatagaaga
                     a"
                     /listShort="ydeI"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        529268
                     /Source="Nicolas_upshifts"
                     /id="U401"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.921078921078921"
                     /psig="0.99100899100899"
                     /xcortree=2390
                     /SigmaFactorBS="tacaaaaagagaaggcttgtgggccttctttttttgtTGTTG
                     CATcatccccactttgaGCTTAATCTATTGAATAATAagagaaggaacctatagaaga
                     a"
                     /listShort="ydeI"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             529402..529995
                     /gene="ydeI"
                     /locus_tag="BSU_05210"
                     /old_locus_tag="BSU05210"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms; PubMedId: 16390439"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved hypothetical protein"
                     /protein_id="NP_388402.1"
                     /db_xref="EnsemblGenomes-Gn:BSU05210"
                     /db_xref="EnsemblGenomes-Tr:CAB12328"
                     /db_xref="InterPro:IPR014922"
                     /db_xref="InterPro:IPR016786"
                     /db_xref="SubtiList:BG12136"
                     /db_xref="UniProtKB/Swiss-Prot:P96666"
                     /translation="MTNSRTNPKVDEFLSKAKKWKEEFEKLRTIILDCELTEDFKWMH
                     PCYTYHNKNIVLIHGFKEYCALLFHKGVLLQDTDGILIQQTENVQAARQIRFTNVQEI
                     NELENILKAYIHEAIEVEKAGLKVDVNKNIELNIPEELQNKFDEIPALKIAFEALTPG
                     RQRAYTLYFSQAKQSKTRESRVEKYVQKILDGKGLKD*"
                     /label="ydeI CDS"
     gene            529402..529995
                     /gene="ydeI"
                     /locus_tag="BSU_05210"
                     /old_locus_tag="BSU05210"
                     /label="ydeI gene"
     downshifts      530038
                     /Source="Nicolas_upshifts"
                     /id="D248"
                     /incds=0
                     /nref=2
                     /ntot=40
                     /MaxReadThrough="1.63432"
                     /MaxDrop="2.96785"
                     /score="2.93671425"
                     /energy="-6.9"
                     /TU="NA"
                     /idTUdmin="U401"
                     /TUdmin=0
                     /isTUend="TRUE"
                     /label="downshifts"
     downshifts      complement(530114)
                     /Source="Nicolas_upshifts"
                     /id="D249"
                     /incds=0
                     /nref=1
                     /ntot=64
                     /MaxReadThrough="2.19009"
                     /MaxDrop="2.9369"
                     /score="-1.28013562"
                     /energy="-6.9"
                     /TU="NA"
                     /idTUdmin="U403"
                     /TUdmin=0
                     /isTUend="TRUE"
                     /label="downshifts"
     promotor_-35    530127..530134
                     /Source="Nicolas_upshift_promotors"
                     /id="U402"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.707292707292707"
                     /psig="0.996003996003996"
                     /xcortree=378
                     /SigmaFactorBS="tcttaggacaacattcacttactgctgaaatgcttctaaCAT
                     TGTATgccactagacagcgTTATAAAATATTAATGCAACacctagaaatctatccaat
                     g"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     upshifts        530148
                     /Source="Nicolas_upshifts"
                     /id="U402"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.707292707292707"
                     /psig="0.996003996003996"
                     /xcortree=378
                     /SigmaFactorBS="tcttaggacaacattcacttactgctgaaatgcttctaaCAT
                     TGTATgccactagacagcgTTATAAAATATTAATGCAACacctagaaatctatccaat
                     g"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-10    530149..530168
                     /Source="Nicolas_upshift_promotors"
                     /id="U402"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.707292707292707"
                     /psig="0.996003996003996"
                     /xcortree=378
                     /SigmaFactorBS="tcttaggacaacattcacttactgctgaaatgcttctaaCAT
                     TGTATgccactagacagcgTTATAAAATATTAATGCAACacctagaaatctatccaat
                     g"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     CDS             complement(530347..531006)
                     /gene="ydeJ"
                     /locus_tag="BSU_05220"
                     /old_locus_tag="BSU05220"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; Product type lp: lipoprotein"
                     /codon_start=1
                     /transl_table=11
                     /product="putative lipoprotein"
                     /protein_id="NP_388403.1"
                     /db_xref="EnsemblGenomes-Gn:BSU05220"
                     /db_xref="EnsemblGenomes-Tr:CAB12329"
                     /db_xref="GOA:P96667"
                     /db_xref="SubtiList:BG12137"
                     /db_xref="UniProtKB/Swiss-Prot:P96667"
                     /translation="MKKRRKICYCNTALLLMILLAGCTDSKDGEAQQPSNQASAVQTD
                     EKHTEPEESTKIRKDEAEPITESEESATKAANDTSSAEEKSKEDNVLAAYSSEKIEYA
                     RVWLQLGPNQEIDELNVRHIAAGEPINPNDDTSASYPENVTQLAGSRLVDGSVTYHGN
                     GDGTIHVYNVPLRWDSADDIEKGVMREVTESIIKNRKTVYVDTGDDEKIKRLIDIMMI
                     H*"
                     /label="ydeJ CDS"
     gene            complement(530347..531006)
                     /gene="ydeJ"
                     /locus_tag="BSU_05220"
                     /old_locus_tag="BSU05220"
                     /label="ydeJ gene"
     promotor_-10    complement(531055..531074)
                     /Source="Nicolas_upshift_promotors"
                     /id="U403"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.987012987012987"
                     /psig="0.997002997002997"
                     /xcortree=3174
                     /SigmaFactorBS="agatcgtttcctcttcttaaacagttttcaaTATCATcctat
                     ctattcCATGGTAATATTTAGATACAtaaacttatatatgaagctgacctgaattaat
                     a"
                     /listShort="ydeJ"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(531062)
                     /Source="Nicolas_upshifts"
                     /id="U403"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.987012987012987"
                     /psig="0.997002997002997"
                     /xcortree=3174
                     /SigmaFactorBS="agatcgtttcctcttcttaaacagttttcaaTATCATcctat
                     ctattcCATGGTAATATTTAGATACAtaaacttatatatgaagctgacctgaattaat
                     a"
                     /listShort="ydeJ"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(531086..531091)
                     /Source="Nicolas_upshift_promotors"
                     /id="U403"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.987012987012987"
                     /psig="0.997002997002997"
                     /xcortree=3174
                     /SigmaFactorBS="agatcgtttcctcttcttaaacagttttcaaTATCATcctat
                     ctattcCATGGTAATATTTAGATACAtaaacttatatatgaagctgacctgaattaat
                     a"
                     /listShort="ydeJ"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             complement(531428..532291)
                     /gene="ydeK"
                     /locus_tag="BSU_05230"
                     /old_locus_tag="BSU05230"
                     /function="16.1: Circulate"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 15849754, 16850406;
                     Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="putative permease"
                     /protein_id="NP_388404.1"
                     /db_xref="EnsemblGenomes-Gn:BSU05230"
                     /db_xref="EnsemblGenomes-Tr:CAB12330"
                     /db_xref="GOA:P96668"
                     /db_xref="InterPro:IPR000620"
                     /db_xref="SubtiList:BG12138"
                     /db_xref="UniProtKB/Swiss-Prot:P96668"
                     /translation="MNKTTNGWINGFIGVLIFSGSLPATRLAVSDFDPLFLTVCRAAI
                     AGVLAGGLLLIFRQQHPAKRDLISLLVVAFGVVIGFPLLTALALQHVTSAHAIVFIGL
                     LPLATAVFGVLRGGERPRPVFWIFSAAGSLLVAGFALIQGGGSSPLGDAYMLASIVVC
                     GLGYAEGAKLSRRLGNWQVISWALVLSLPLMLPLSFFFTPDSWSAIGVPALLSLAYVS
                     LFSMLIGFVFWYRGLAQGGIAAVGQLQLLQPFFGLLLASVILHEKVGWALVAVNIAVI
                     MCVAAARRFAK*"
                     /label="ydeK CDS"
     gene            complement(531428..532291)
                     /gene="ydeK"
                     /locus_tag="BSU_05230"
                     /old_locus_tag="BSU05230"
                     /label="ydeK gene"
     promotor_-35    532334..532340
                     /Source="Nicolas_upshift_promotors"
                     /id="U404"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.548451548451548"
                     /psig="0.97002997002997"
                     /xcortree=639
                     /SigmaFactorBS="ctttcttgttcattgtctgtatttTCTTAACaaaaccagcag
                     ctaAGGATTACAATGACTATAAActggaattggccttttataaacagccagttttcat
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    532355..532374
                     /Source="Nicolas_upshift_promotors"
                     /id="U404"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.548451548451548"
                     /psig="0.97002997002997"
                     /xcortree=639
                     /SigmaFactorBS="ctttcttgttcattgtctgtatttTCTTAACaaaaccagcag
                     ctaAGGATTACAATGACTATAAActggaattggccttttataaacagccagttttcat
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     promotor_-10    complement(532356..532375)
                     /Source="Nicolas_upshift_promotors"
                     /id="U405"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.811188811188811"
                     /psig="0.997002997002997"
                     /xcortree=412
                     /SigmaFactorBS="cgttgttctcctaactggtatgcatttttttatgaaaactgg
                     cTGTTTATAaaaggccaattccaGTTTATAGTCATTGTAATCCttagctgctggtttt
                     g"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        532370
                     /Source="Nicolas_upshifts"
                     /id="U404"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.548451548451548"
                     /psig="0.97002997002997"
                     /xcortree=639
                     /SigmaFactorBS="ctttcttgttcattgtctgtatttTCTTAACaaaaccagcag
                     ctaAGGATTACAATGACTATAAActggaattggccttttataaacagccagttttcat
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     upshifts        complement(532380)
                     /Source="Nicolas_upshifts"
                     /id="U405"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.811188811188811"
                     /psig="0.997002997002997"
                     /xcortree=412
                     /SigmaFactorBS="cgttgttctcctaactggtatgcatttttttatgaaaactgg
                     cTGTTTATAaaaggccaattccaGTTTATAGTCATTGTAATCCttagctgctggtttt
                     g"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(532390..532397)
                     /Source="Nicolas_upshift_promotors"
                     /id="U405"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.811188811188811"
                     /psig="0.997002997002997"
                     /xcortree=412
                     /SigmaFactorBS="cgttgttctcctaactggtatgcatttttttatgaaaactgg
                     cTGTTTATAaaaggccaattccaGTTTATAGTCATTGTAATCCttagctgctggtttt
                     g"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             532446..533837
                     /gene="ydeL"
                     /locus_tag="BSU_05240"
                     /old_locus_tag="BSU05240"
                     /function="16.3: Control"
                     /function="16.8: Protect"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 15223311, 28348215;
                     Product type r: regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="putative PLP-dependent transcriptional
                     regulator"
                     /protein_id="NP_388405.1"
                     /db_xref="EnsemblGenomes-Gn:BSU05240"
                     /db_xref="EnsemblGenomes-Tr:CAB12331"
                     /db_xref="GOA:P96669"
                     /db_xref="InterPro:IPR000524"
                     /db_xref="InterPro:IPR004839"
                     /db_xref="InterPro:IPR015421"
                     /db_xref="InterPro:IPR015422"
                     /db_xref="InterPro:IPR015424"
                     /db_xref="InterPro:IPR036388"
                     /db_xref="InterPro:IPR036390"
                     /db_xref="SubtiList:BG12139"
                     /db_xref="UniProtKB/Swiss-Prot:P96669"
                     /translation="MDITPFLNRTLDIPLYQQLYRYFKENMHRGRIQKGMKLPSKRLL
                     ANQLSISQTTVERAYEQLAAEGYIVSKPRSGWFADYHDSDFAYDRMPSTTPIQQEAEE
                     NKQWIDFHYGNVDSSYFPFSAWRKSMVNSLDQYGHELYRPGHVLGEFELRTLIAEYLY
                     QSRGVHCGPEQVIIGAGNPILLQILCQVFEPNISIGYEDPGYPRARKIFEANRMNIVP
                     IPVDDEGICIQKIKEQQPNLVYVTPSHQFTLGTIMTINRRIQLLKWAAENQSFIIEDD
                     YDGEFRYTGQPVPSLQGLDQHNRVIYMGTFSKSLLPSLRISYMILPSPLLKKGHEITS
                     LYKQTVSCHSQLTLAEFIKNGEWQKHINRMRKLYRKKRAIVLEAVQRELGEHVRIRGE
                     NSGLRILLDVYLPFGEKELIEKAKKHGVKIYPVSLSYQHHPPTKTVSLGFAGVSESDI
                     REGIKKLKAAWKI*"
                     /label="ydeL CDS"
     gene            532446..533837
                     /gene="ydeL"
                     /locus_tag="BSU_05240"
                     /old_locus_tag="BSU05240"
                     /label="ydeL gene"
     promotor_-35    533965..533972
                     /Source="Nicolas_upshift_promotors"
                     /id="U406"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.984015984015984"
                     /psig="0.999000999001"
                     /xcortree=2260
                     /SigmaFactorBS="gatacgtctgtttagcgaaaaacagaatTTTTTATTtgctcc
                     tcacAGTGCTAAAATAAACAAAATagacaattgaaaaaatagaggtgtaagaatgaag
                     t"
                     /listShort="ydeM, S183"
                     /listLong="ydeO"
                     /label="promotor_-35"
     promotor_-10    533983..534002
                     /Source="Nicolas_upshift_promotors"
                     /id="U406"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.984015984015984"
                     /psig="0.999000999001"
                     /xcortree=2260
                     /SigmaFactorBS="gatacgtctgtttagcgaaaaacagaatTTTTTATTtgctcc
                     tcacAGTGCTAAAATAAACAAAATagacaattgaaaaaatagaggtgtaagaatgaag
                     t"
                     /listShort="ydeM, S183"
                     /listLong="ydeO"
                     /label="promotor_-10"
     upshifts        533997
                     /Source="Nicolas_upshifts"
                     /id="U406"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.984015984015984"
                     /psig="0.999000999001"
                     /xcortree=2260
                     /SigmaFactorBS="gatacgtctgtttagcgaaaaacagaatTTTTTATTtgctcc
                     tcacAGTGCTAAAATAAACAAAATagacaattgaaaaaatagaggtgtaagaatgaag
                     t"
                     /listShort="ydeM, S183"
                     /listLong="ydeO"
                     /label="upshifts"
     CDS             534031..534456
                     /gene="ydeM"
                     /locus_tag="BSU_05250"
                     /old_locus_tag="BSU05250"
                     /function="16.11: Scavenge (Catabolism)"
                     /function="16.8: Protect"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 1556068, 26349822;
                     Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative dehydratase"
                     /protein_id="NP_388406.1"
                     /db_xref="EnsemblGenomes-Gn:BSU05250"
                     /db_xref="EnsemblGenomes-Tr:CAB12332"
                     /db_xref="InterPro:IPR002539"
                     /db_xref="InterPro:IPR029069"
                     /db_xref="SubtiList:BG12140"
                     /db_xref="UniProtKB/Swiss-Prot:P96670"
                     /translation="MKLDEFTIGQVFKTKSLKVSKDDIMRFAGEFDPQYMHVDEEKAS
                     KGRFNGIIASGIQTLAISFKLWIEEGFYGDDIIAGTEMNHMTFIKPVYPDDELFTIVE
                     VLDKQPKRNELGILTVLLSTYNQKEVKVFEGELSVLIKR*"
                     /label="ydeM CDS"
     gene            534031..534456
                     /gene="ydeM"
                     /locus_tag="BSU_05250"
                     /old_locus_tag="BSU05250"
                     /label="ydeM gene"
     S_feature       534457..535711
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_573400_574654"
                     /HighExp="G135, H2O2, G150, HiOs, G180, Cold, Paraq, UNK1,
                     MG 15, LBGexp"
                     /AntisenseName="ydeN"
                     /AntisenseCor="0.40423774227585801"
                     /AntisenseRegPval="-11.3"
                     /CDS_PredictionProba="0.127641"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.999"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S183"
     CDS             complement(534509..535081)
                     /gene="ydeN"
                     /locus_tag="BSU_05260"
                     /old_locus_tag="BSU05260"
                     /EC_number="3.-.-.-"
                     /function="16.11: Scavenge (Catabolism)"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 15159570; Product type
                     e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative alpha/beta hydrolase"
                     /protein_id="NP_388407.1"
                     /db_xref="EnsemblGenomes-Gn:BSU05260"
                     /db_xref="EnsemblGenomes-Tr:CAB12333"
                     /db_xref="GOA:P96671"
                     /db_xref="InterPro:IPR010662"
                     /db_xref="InterPro:IPR029058"
                     /db_xref="PDB:1UXO"
                     /db_xref="SubtiList:BG12141"
                     /db_xref="UniProtKB/Swiss-Prot:P96671"
                     /translation="MTKQVYIIHGYRASSTNHWFPWLKKRLLADGVQADILNMPNPLQ
                     PRLEDWLDTLSLYQHTLHENTYLVAHSLGCPAILRFLEHLQLRKQLGGIILVSGFAKS
                     LPTLQMLDEFTQGSFDHQKIIESAKHRAVIASKDDQIVPFSFSKDLAQQIDAALYEVQ
                     HGGHFLEDEGFTSLPIVYDVLTSYFSKETR*"
                     /label="ydeN CDS"
     gene            complement(534509..535081)
                     /gene="ydeN"
                     /locus_tag="BSU_05260"
                     /old_locus_tag="BSU05260"
                     /label="ydeN gene"
     downshifts      complement(534514)
                     /Source="Nicolas_upshifts"
                     /id="D250"
                     /incds=0
                     /nref=16
                     /ntot=160
                     /MaxReadThrough="1.96868"
                     /MaxDrop="3.80195"
                     /score="2.50673989"
                     /energy="-11.3"
                     /TU="NA"
                     /idTUdmin="U407"
                     /TUdmin=0
                     /isTUend="TRUE"
                     /label="downshifts"
     S_feature       complement(535082..535162)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_574025_574105_c"
                     /HighExp="dia15, dia5, Diami, Etha, LPhT, Lbtran, Heat,
                     H2O2, Sw, T4.0H"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.955"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S184"
     CDS             complement(535163..535492)
                     /gene="ydzF"
                     /locus_tag="BSU_05270"
                     /old_locus_tag="BSU05270"
                     /function="16.3: Control"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; Product type r: regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="putative transcriptional regulator"
                     /protein_id="NP_388408.1"
                     /db_xref="EnsemblGenomes-Gn:BSU05270"
                     /db_xref="EnsemblGenomes-Tr:CAB12334"
                     /db_xref="GOA:O31494"
                     /db_xref="InterPro:IPR002577"
                     /db_xref="InterPro:IPR036388"
                     /db_xref="InterPro:IPR036390"
                     /db_xref="SubtiList:BG12809"
                     /db_xref="UniProtKB/Swiss-Prot:O31494"
                     /translation="MNSLCRSKQAPFEYTLSLIGGKWKMRILYELGCEKTMRYGELKR
                     AMPFITHKMLSAQLKELQTDGLIHRSEVSHTPLKVEYSLSDRGRSLYPLIDEMCKWGM
                     AQGGPHM*"
                     /label="ydzF CDS"
     gene            complement(535163..535492)
                     /gene="ydzF"
                     /locus_tag="BSU_05270"
                     /old_locus_tag="BSU05270"
                     /label="ydzF gene"
     misc_feature    complement(535509..535528)
                     /Source="Nicolas_upshift_promotors"
                     /id="U407"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.416583416583417"
                     /psig="0.955044955044955"
                     /xcortree=1959
                     /SigmaFactorBS="cctttcacttcagatcgtgaatcgccctcaaacttcaacacc
                     gaaaatcctaatttatTCTGATATGATACTTAAAAAaggaggtttgattacaatgaat
                     a"
                     /listShort="ydzF, S184, ydeN"
                     /GFF_Attribute="listLong"
                     /label="promotor_single_box"
                     /note="Geneious type: promotor_single_box"
     upshifts        complement(535526)
                     /Source="Nicolas_upshifts"
                     /id="U407"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.416583416583417"
                     /psig="0.955044955044955"
                     /xcortree=1959
                     /SigmaFactorBS="cctttcacttcagatcgtgaatcgccctcaaacttcaacacc
                     gaaaatcctaatttatTCTGATATGATACTTAAAAAaggaggtttgattacaatgaat
                     a"
                     /listShort="ydzF, S184, ydeN"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     misc_feature    535700..535719
                     /Source="Nicolas_upshift_promotors"
                     /id="U408"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.78021978021978"
                     /psig=1
                     /xcortree=2345
                     /SigmaFactorBS="agttactttatttaaaaaaacgcatgtttttagctgaaaata
                     tctatTATGGTATATTTAAATATAAagaaatatttgagaaatgaggaatggtatgaat
                     a"
                     /listShort="ydeO"
                     /GFF_Attribute="listLong"
                     /label="promotor_single_box"
                     /note="Geneious type: promotor_single_box"
     upshifts        535713
                     /Source="Nicolas_upshifts"
                     /id="U408"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.78021978021978"
                     /psig=1
                     /xcortree=2345
                     /SigmaFactorBS="agttactttatttaaaaaaacgcatgtttttagctgaaaata
                     tctatTATGGTATATTTAAATATAAagaaatatttgagaaatgaggaatggtatgaat
                     a"
                     /listShort="ydeO"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             535747..536619
                     /gene="ydeO"
                     /locus_tag="BSU_05280"
                     /old_locus_tag="BSU05280"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 15849754, 16850406;
                     Product type m: membrane component"
                     /codon_start=1
                     /transl_table=11
                     /product="putative integral inner membrane protein"
                     /protein_id="NP_388409.1"
                     /db_xref="EnsemblGenomes-Gn:BSU05280"
                     /db_xref="EnsemblGenomes-Tr:CAB12335"
                     /db_xref="GOA:P96672"
                     /db_xref="InterPro:IPR003740"
                     /db_xref="InterPro:IPR019264"
                     /db_xref="SubtiList:BG12142"
                     /db_xref="UniProtKB/Swiss-Prot:P96672"
                     /translation="MNTPKKHKKFKAKMILQIIMVIIGGIIAAYGLETVLIPNSVSDG
                     GVTGLSIVGSQLFNLPLGILIAVINIPFVWLGYKQIGKSFALLSIIGIVSLAAGTSFF
                     HHTPAIIEGDTLLITVVGGIILGFGMGLALRNGGALDGIDMLAVLLSRKLPFGTSDLI
                     LFLNLFVFIFVSTVFGLQGALLSVIAYYIASKVIHVVEEGLSGSKTFQIITTQPELMV
                     ETIRDQLGRSATYKEAYGGFSHEKFKEITCVINRLEETKLKEIINDIDKTAFVTVYDV
                     AEVKGSNFRNLNHH*"
                     /label="ydeO CDS"
     gene            535747..536619
                     /gene="ydeO"
                     /locus_tag="BSU_05280"
                     /old_locus_tag="BSU05280"
                     /label="ydeO gene"
     downshifts      536506
                     /Source="Nicolas_upshifts"
                     /id="D251"
                     /incds=1
                     /nref=7
                     /ntot=181
                     /MaxReadThrough="3.84278"
                     /MaxDrop="2.68681"
                     /score="15.0132064"
                     /energy="-12.2"
                     /TU="U408"
                     /idTUdmin="U408"
                     /TUdmin="-198"
                     /isTUend="FALSE"
                     /label="downshifts"
     downshifts      536704
                     /Source="Nicolas_upshifts"
                     /id="D252"
                     /incds=0
                     /nref=54
                     /ntot=208
                     /MaxReadThrough="1.19842"
                     /MaxDrop="3.77294"
                     /score="15.0132064"
                     /energy="-12.2"
                     /TU="NA"
                     /idTUdmin="U408"
                     /TUdmin=0
                     /isTUend="TRUE"
                     /label="downshifts"
     CDS             complement(536769..537155)
                     /gene="ydeP"
                     /locus_tag="BSU_05290"
                     /old_locus_tag="BSU05290"
                     /function="16.3: Control"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; Product type r: regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="putative transcriptional regulator"
                     /protein_id="NP_388410.1"
                     /db_xref="EnsemblGenomes-Gn:BSU05290"
                     /db_xref="EnsemblGenomes-Tr:CAB12336"
                     /db_xref="GOA:P96673"
                     /db_xref="InterPro:IPR002577"
                     /db_xref="InterPro:IPR036388"
                     /db_xref="InterPro:IPR036390"
                     /db_xref="SubtiList:BG12143"
                     /db_xref="UniProtKB/Swiss-Prot:P96673"
                     /translation="MRNRKLGIDYSSDDFEGCPVETTLDIIGGKWKGILLYHLIDGKK
                     RFNEFRKLYPKITQRMLTLQLRELERDGVIHREVYKQVPPKVEYSLTEFGRTLEPVIL
                     HMKDWGEKYKDRIDKLEAARKAEDKI*"
                     /label="ydeP CDS"
     gene            complement(536769..537155)
                     /gene="ydeP"
                     /locus_tag="BSU_05290"
                     /old_locus_tag="BSU05290"
                     /label="ydeP gene"
     downshifts      complement(536781)
                     /Source="Nicolas_upshifts"
                     /id="D253"
                     /incds=0
                     /nref=29
                     /ntot=191
                     /MaxReadThrough="0.85093"
                     /MaxDrop="4.4837"
                     /score="-9.3516261"
                     /energy="-12.9"
                     /TU="NA"
                     /idTUdmin="U409"
                     /TUdmin="-1"
                     /isTUend="TRUE"
                     /label="downshifts"
     S_feature       complement(537156..537220)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_576099_576163_c"
                     /HighExp="Diami, dia5, Salt, dia15, Etha, Heat, G180,
                     HiOs, LBGexp, HiTm"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.999"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S185"
     promotor_-35    537208..537215
                     /Source="Nicolas_upshift_promotors"
                     /id="U410"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.67032967032967"
                     /psig="0.936063936063936"
                     /xcortree=1790
                     /SigmaFactorBS="agtatactttttgatactatatacattcaatgtgcgTACTTT
                     TTatattttaatataCATCATATAATGATGTCACAtctaaggaatgaaaggaatggat
                     c"
                     /listShort="ydeQ"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    complement(537209..537228)
                     /Source="Nicolas_upshift_promotors"
                     /id="U409"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.568431568431568"
                     /psig="0.999000999001"
                     /xcortree=1896
                     /SigmaFactorBS="gttttcatatgatccattcctttcattccttaGATGTGACat
                     cattatatgatgTATATTAAAATATAAAAAGTacgcacattgaatgtatatagtatca
                     a"
                     /listShort="S185, ydeP"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(537222)
                     /Source="Nicolas_upshifts"
                     /id="U409"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.568431568431568"
                     /psig="0.999000999001"
                     /xcortree=1896
                     /SigmaFactorBS="gttttcatatgatccattcctttcattccttaGATGTGACat
                     cattatatgatgTATATTAAAATATAAAAAGTacgcacattgaatgtatatagtatca
                     a"
                     /listShort="S185, ydeP"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-10    537229..537248
                     /Source="Nicolas_upshift_promotors"
                     /id="U410"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.67032967032967"
                     /psig="0.936063936063936"
                     /xcortree=1790
                     /SigmaFactorBS="agtatactttttgatactatatacattcaatgtgcgTACTTT
                     TTatattttaatataCATCATATAATGATGTCACAtctaaggaatgaaaggaatggat
                     c"
                     /listShort="ydeQ"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        537232
                     /Source="Nicolas_upshifts"
                     /id="U410"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.67032967032967"
                     /psig="0.936063936063936"
                     /xcortree=1790
                     /SigmaFactorBS="agtatactttttgatactatatacattcaatgtgcgTACTTT
                     TTatattttaatataCATCATATAATGATGTCACAtctaaggaatgaaaggaatggat
                     c"
                     /listShort="ydeQ"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(537243..537250)
                     /Source="Nicolas_upshift_promotors"
                     /id="U409"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.568431568431568"
                     /psig="0.999000999001"
                     /xcortree=1896
                     /SigmaFactorBS="gttttcatatgatccattcctttcattccttaGATGTGACat
                     cattatatgatgTATATTAAAATATAAAAAGTacgcacattgaatgtatatagtatca
                     a"
                     /listShort="S185, ydeP"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             537266..537859
                     /gene="ydeQ"
                     /locus_tag="BSU_05300"
                     /old_locus_tag="BSU05300"
                     /EC_number="1.6.99.-"
                     /function="16.8: Protect"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative NAD(P)H oxidoreductase involved in
                     regulating potassium efflux"
                     /protein_id="NP_388411.1"
                     /db_xref="EnsemblGenomes-Gn:BSU05300"
                     /db_xref="EnsemblGenomes-Tr:CAB12337"
                     /db_xref="GOA:P96674"
                     /db_xref="InterPro:IPR003680"
                     /db_xref="InterPro:IPR029039"
                     /db_xref="SubtiList:BG12144"
                     /db_xref="UniProtKB/Swiss-Prot:P96674"
                     /translation="MDHMKTLVLVVHPNIESSRINKKWKEAVLSEPDVTVHDLYEKYR
                     DQPIDVEFEQQQLLAHDRIVFQFPLYWYSSPPLLKQWFDEVFTFGWAHGPGGNKLKGK
                     EWVTAMSIGSPEHSYQAGGYNLFSISELTKPFQASAHLVGMTYLPSFAEYRANTISDQ
                     EIAESANRYVKHITNIELNPKVRLQRYLKQLESVDLT*"
                     /label="ydeQ CDS"
     gene            537266..537859
                     /gene="ydeQ"
                     /locus_tag="BSU_05300"
                     /old_locus_tag="BSU05300"
                     /label="ydeQ gene"
     CDS             complement(538003..539190)
                     /gene="ydeR"
                     /locus_tag="BSU_05310"
                     /old_locus_tag="BSU05310"
                     /function="16.1: Circulate"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 15849754, 16850406;
                     Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="putative efflux transporter"
                     /protein_id="NP_388412.1"
                     /db_xref="EnsemblGenomes-Gn:BSU05310"
                     /db_xref="EnsemblGenomes-Tr:CAB12338"
                     /db_xref="GOA:P96675"
                     /db_xref="InterPro:IPR011701"
                     /db_xref="InterPro:IPR020846"
                     /db_xref="InterPro:IPR036259"
                     /db_xref="SubtiList:BG12145"
                     /db_xref="UniProtKB/Swiss-Prot:P96675"
                     /translation="MANGNKQAGQRISPSLTLLLATACGIIVANLYYAQPLVGLISKA
                     IGLSPSGAGLIVTLTQIGYVAGLLFLVPLGDIIENKKLIVVSLLLSAAALTLTAFVKH
                     GTLFLAAAFFVGLGSIAAQVLVPFASYLASDAARGRVVGNVMSGLLLGIMLSRPISSL
                     VADIWGWNAIFALSAVVSVILAIVLSKVLPARKPTANTNYTALLGSMWKLLRTTPVLR
                     RRAIYHAFVFGAFSLFWTTVPLLLSGPDFHFSQKAIALYALVGIAGAVTAPIGGRLAD
                     RGLTRLATGIALGVVVVSLLLPLMIQSSSPVGITVLVAAAILLDMGVSANLVLSQRAI
                     FSLAPEIRSRLNGLFMAIFFLGGAIGSSIGGWAYASGGWSTALWIGIAFPVIALLYFI
                     TEK*"
                     /label="ydeR CDS"
     gene            complement(538003..539190)
                     /gene="ydeR"
                     /locus_tag="BSU_05310"
                     /old_locus_tag="BSU05310"
                     /label="ydeR gene"
     promotor_-35    539326..539330
                     /Source="Nicolas_upshift_promotors"
                     /id="U411"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.605394605394605"
                     /psig="0.999000999001"
                     /xcortree=2381
                     /SigmaFactorBS="aaaaataatatactaaacgttcagttttgtaaatggatttct
                     GTTTTctttttttattcaaTTTAAGTATACTGAACGTATagtttatattgcgggaagg
                     a"
                     /listShort="ydeS, ydzO"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     upshifts        539344
                     /Source="Nicolas_upshifts"
                     /id="U411"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.605394605394605"
                     /psig="0.999000999001"
                     /xcortree=2381
                     /SigmaFactorBS="aaaaataatatactaaacgttcagttttgtaaatggatttct
                     GTTTTctttttttattcaaTTTAAGTATACTGAACGTATagtttatattgcgggaagg
                     a"
                     /listShort="ydeS, ydzO"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-10    539345..539364
                     /Source="Nicolas_upshift_promotors"
                     /id="U411"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.605394605394605"
                     /psig="0.999000999001"
                     /xcortree=2381
                     /SigmaFactorBS="aaaaataatatactaaacgttcagttttgtaaatggatttct
                     GTTTTctttttttattcaaTTTAAGTATACTGAACGTATagtttatattgcgggaagg
                     a"
                     /listShort="ydeS, ydzO"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     CDS             539394..539990
                     /gene="ydeS"
                     /locus_tag="BSU_05320"
                     /old_locus_tag="BSU05320"
                     /function="16.3: Control"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 15944459; Product type
                     r: regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="putative transcriptional regulator (TetR/AcrR
                     family)"
                     /protein_id="NP_388413.1"
                     /db_xref="EnsemblGenomes-Gn:BSU05320"
                     /db_xref="EnsemblGenomes-Tr:CAB12339"
                     /db_xref="GOA:P96676"
                     /db_xref="InterPro:IPR001647"
                     /db_xref="InterPro:IPR009057"
                     /db_xref="InterPro:IPR011075"
                     /db_xref="InterPro:IPR036271"
                     /db_xref="SubtiList:BG12146"
                     /db_xref="UniProtKB/Swiss-Prot:P96676"
                     /translation="MQSKRGRPRDEGTHKAILSAAYDLLLEKGFDAVTVDKIAERAKV
                     SKATIYKWWSNKAAVIMDSFLSTATDRLPVPDTGSSVQDIVTHATNLARFLTSREGTV
                     IKELIGAGQLDEKLAEEYRTRFFQPRRLQAKGLLEKGIQKGELRENLDIEVSIDLIYG
                     PIFYRLLITGDEVNDSYVRDLVMNAFKGVQATSATESM*"
                     /label="ydeS CDS"
     gene            539394..539990
                     /gene="ydeS"
                     /locus_tag="BSU_05320"
                     /old_locus_tag="BSU05320"
                     /label="ydeS gene"
     CDS             540104..540289
                     /gene="ydzO"
                     /locus_tag="BSU_05329"
                     /old_locus_tag="BSU05329"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 5: Unknown function"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_003097684.1"
                     /db_xref="EnsemblGenomes-Gn:BSU05329"
                     /db_xref="EnsemblGenomes-Tr:CAX52555"
                     /db_xref="UniProtKB/Swiss-Prot:C0H3V9"
                     /translation="MSKKKSFNREYITSYYYIPFHRLEQGFYTSMEYRKVGVFKQQGK
                     IDGHYVGVMAMEKILAM*"
                     /label="ydzO CDS"
     gene            540104..540289
                     /gene="ydzO"
                     /locus_tag="BSU_05329"
                     /old_locus_tag="BSU05329"
                     /label="ydzO gene"
     downshifts      540268
                     /Source="Nicolas_upshifts"
                     /id="D254"
                     /incds=0
                     /nref=5
                     /ntot=123
                     /MaxReadThrough="1.06987"
                     /MaxDrop="2.89833"
                     /score="-5.04743481"
                     /energy="-6.3"
                     /TU="NA"
                     /idTUdmin="U411"
                     /TUdmin=0
                     /isTUend="TRUE"
                     /label="downshifts"
     promotor_-35    540401..540404
                     /Source="Nicolas_upshift_promotors"
                     /id="U412"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.356643356643357"
                     /psig="0.99000999000999"
                     /xcortree=2480
                     /SigmaFactorBS="tctatgaccactcccataactgaaatagtctaatatttatac
                     cagaagggATTGtttatataaataaaAGTTTATATAATGACGGGGGcgctaaggaaac
                     g"
                     /listShort="S186, aseR, ydfA, ydzS, ydzS"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     S_feature       540411..540597
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_579354_579540"
                     /HighExp="LBGstat, G180, LBGexp, G135, Paraq, G150, Oxctl,
                     dia0, Diami, H2O2"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.99"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S186"
     upshifts        540411
                     /Source="Nicolas_upshifts"
                     /id="U412"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.356643356643357"
                     /psig="0.99000999000999"
                     /xcortree=2480
                     /SigmaFactorBS="tctatgaccactcccataactgaaatagtctaatatttatac
                     cagaagggATTGtttatataaataaaAGTTTATATAATGACGGGGGcgctaaggaaac
                     g"
                     /listShort="S186, aseR, ydfA, ydzS, ydzS"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-10    540419..540438
                     /Source="Nicolas_upshift_promotors"
                     /id="U412"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.356643356643357"
                     /psig="0.99000999000999"
                     /xcortree=2480
                     /SigmaFactorBS="tctatgaccactcccataactgaaatagtctaatatttatac
                     cagaagggATTGtttatataaataaaAGTTTATATAATGACGGGGGcgctaaggaaac
                     g"
                     /listShort="S186, aseR, ydfA, ydzS, ydzS"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     CDS             540598..540933
                     /gene="aseR"
                     /locus_tag="BSU_05330"
                     /old_locus_tag="BSU05330"
                     /function="16.3: Control"
                     /function="16.12: Sense"
                     /experiment="publication(s) with functional evidences,
                     PMID:15948947, 16430705"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 15948947, 16430705;
                     Product type r: regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator (metals sensing
                     ArsR-SmtB repressors family)"
                     /protein_id="NP_388414.1"
                     /db_xref="EnsemblGenomes-Gn:BSU05330"
                     /db_xref="EnsemblGenomes-Tr:CAB12340"
                     /db_xref="GOA:P96677"
                     /db_xref="InterPro:IPR001845"
                     /db_xref="InterPro:IPR011991"
                     /db_xref="InterPro:IPR036388"
                     /db_xref="InterPro:IPR036390"
                     /db_xref="SubtiList:BG12147"
                     /db_xref="UniProtKB/Swiss-Prot:P96677"
                     /translation="MTIDVAAMTRCLKTLSDQTRLIMMRLFLEQEYCVCQLVDMFEMS
                     QPAISQHLRKLKNAGFVNEDRRGQWRYYSINGSCPEFDTLQLILHQIDQEDELLNHIK
                     QKKTQACCQ*"
                     /label="aseR CDS"
     gene            540598..540933
                     /gene="aseR"
                     /locus_tag="BSU_05330"
                     /old_locus_tag="BSU05330"
                     /label="aseR gene"
     CDS             540946..542253
                     /gene="arsF"
                     /locus_tag="BSU_05340"
                     /old_locus_tag="BSU05340"
                     /function="16.1: Circulate"
                     /function="16.8: Protect"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 2a: Function from experimental evidences
                     in other organisms; PubMedId: 12950922, 14970228,
                     15849754, 16850406; Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="arsenite/antimonite/H+ antiporter"
                     /protein_id="NP_388415.1"
                     /db_xref="EnsemblGenomes-Gn:BSU05340"
                     /db_xref="EnsemblGenomes-Tr:CAB12341"
                     /db_xref="GOA:P96678"
                     /db_xref="InterPro:IPR000802"
                     /db_xref="SubtiList:BG12148"
                     /db_xref="UniProtKB/Swiss-Prot:P96678"
                     /translation="MTSMILAVFIFLLTLVLVIWQPKNLSIGWSACGGAVLALIAGVV
                     NFHDVLTVTGIVWNATLAFVAIILISLILDNIGFFEWAALHMAKAAKGYGVRMFVYVS
                     LLGAIVAALFANDGAALILTPIVLAMVRALHFNEKLVFPFIIASGFIADTTSLPFVVS
                     NLVNIVSADYFHITFIDYASRMVVPYLFSLLASIIVLYLFFRKSIPKRYDLTEVKKPV
                     EAIKDQNMFRLSWYILGLLLIGYFASEFFSIPVSVVAGSIAIIFLIAAQKSPAVHTKK
                     VVKEAPWAIVFFSIGMYVVVYGVRNAGLTDVLSDVIQAAADQGLFAGTIGMGFIAAIL
                     SSIMNNLPTVMIDALAIAGTDTHGMMREALIYANVIGSDLGPKITPIGSLATLLWLHV
                     LSHKGMKISWGTYFKTGIILTIPTLLITLVGLYIWLLIIHSCF*"
                     /label="arsF CDS"
     gene            540946..542253
                     /gene="arsF"
                     /locus_tag="BSU_05340"
                     /old_locus_tag="BSU05340"
                     /label="arsF gene"
     CDS             542285..542389
                     /gene="ydzSn"
                     /locus_tag="BSU_05343"
                     /old_locus_tag="BSU05343"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 5: Unknown function"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="conserved hypothetical protein; N-terminal part
                     of ydzS"
                     /translation="CTGNSCRSQMAEGWGRKYLGAKWNVYSAGIEAQG*"
                     /label="ydzSn CDS"
     gene            542285..542389
                     /gene="ydzSn"
                     /locus_tag="BSU_05343"
                     /old_locus_tag="BSU05343"
                     /pseudo
                     /label="ydzSn gene"
     CDS             542398..542511
                     /gene="ydzSc"
                     /locus_tag="BSU_05344"
                     /old_locus_tag="BSU05344"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 5: Unknown function"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="conserved hypothetical protein; C-terminal part
                     of ydzS"
                     /translation="AVKAMKEAGIDISNQTSEKFDDPAKAHGTEEVFPKGP*"
                     /label="ydzSc CDS"
     gene            542398..542511
                     /gene="ydzSc"
                     /locus_tag="BSU_05344"
                     /old_locus_tag="BSU05344"
                     /pseudo
                     /label="ydzSc gene"
     promotor_-35    542697..542705
                     /Source="Nicolas_upshift_promotors"
                     /id="U413"
                     /multdbtbs="-"
                     /comp="M1"
                     /sig="SigH"
                     /pcomp="0.987012987012987"
                     /psig="0.987012987012987"
                     /xcortree=429
                     /SigmaFactorBS="cagggaagttatttagctggtgacAGAGGAAAAttgatttgt
                     gAACAGAATCATGAAGGAGAcggtgttttaaaggagttgtctgttttgcaggaattaa
                     c"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    542716..542734
                     /Source="Nicolas_upshift_promotors"
                     /id="U413"
                     /multdbtbs="-"
                     /comp="M1"
                     /sig="SigH"
                     /pcomp="0.987012987012987"
                     /psig="0.987012987012987"
                     /xcortree=429
                     /SigmaFactorBS="cagggaagttatttagctggtgacAGAGGAAAAttgatttgt
                     gAACAGAATCATGAAGGAGAcggtgttttaaaggagttgtctgttttgcaggaattaa
                     c"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        542733
                     /Source="Nicolas_upshifts"
                     /id="U413"
                     /multdbtbs="-"
                     /comp="M1"
                     /sig="SigH"
                     /pcomp="0.987012987012987"
                     /psig="0.987012987012987"
                     /xcortree=429
                     /SigmaFactorBS="cagggaagttatttagctggtgacAGAGGAAAAttgatttgt
                     gAACAGAATCATGAAGGAGAcggtgttttaaaggagttgtctgttttgcaggaattaa
                     c"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             542751..543536
                     /gene="ydfB"
                     /locus_tag="BSU_05350"
                     /old_locus_tag="BSU05350"
                     /function="16.6: Maintain"
                     /function="16.8: Protect"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 12793527; Product type
                     e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative acetyltransferase"
                     /protein_id="NP_388416.1"
                     /db_xref="EnsemblGenomes-Gn:BSU05350"
                     /db_xref="EnsemblGenomes-Tr:CAB12342"
                     /db_xref="GOA:P96679"
                     /db_xref="InterPro:IPR000182"
                     /db_xref="InterPro:IPR016181"
                     /db_xref="InterPro:IPR027365"
                     /db_xref="SubtiList:BG12149"
                     /db_xref="UniProtKB/Swiss-Prot:P96679"
                     /translation="MSVLQELTKKKYSSLKTMFDDKYCPTFVYSILDQTIPGAVYADD
                     QTFPKSFFIGTESGIYFIAGDQGNRDFHDFIAGYYEEQVKSSKRFTLFSSSDTWDSVL
                     KPILKDDLNQMRRAAFSYQPKSFKKTLQLPKGLVLKRIDEDIISHSTAFNSAYYEEYW
                     NSVSQFASKGFGFAVLHGNHVVSECTSIFLGHNRAEMDIYTLEEYRGLGLAYCVANRF
                     IAFCMENGIVPSWDCDICNNSSIALAAKLGFKTVTEYTIYYSG*"
                     /label="ydfB CDS"
     gene            542751..543536
                     /gene="ydfB"
                     /locus_tag="BSU_05350"
                     /old_locus_tag="BSU05350"
                     /label="ydfB gene"
     downshifts      542798
                     /Source="Nicolas_upshifts"
                     /id="D255"
                     /incds=0
                     /nref=3
                     /ntot=24
                     /MaxReadThrough="2.67554"
                     /MaxDrop="5.08398"
                     /score="39.1565399"
                     /energy="-19.2"
                     /TU="NA"
                     /idTUdmin="U413"
                     /TUdmin=0
                     /isTUend="TRUE"
                     /label="downshifts"
     downshifts      543546
                     /Source="Nicolas_upshifts"
                     /id="D256"
                     /incds=0
                     /nref=2
                     /ntot=90
                     /MaxReadThrough="0.161840000000001"
                     /MaxDrop="3.51451"
                     /score="-0.169292431"
                     /energy="-13.6"
                     /TU="NA"
                     /idTUdmin="U413"
                     /TUdmin=748
                     /isTUend="FALSE"
                     /label="downshifts"
     CDS             complement(543593..544513)
                     /gene="ydfC"
                     /locus_tag="BSU_05360"
                     /old_locus_tag="BSU05360"
                     /function="16.2: Construct biomass (Anabolism)"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 15849754, 16850406;
                     Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="putative aminoacid exporter"
                     /protein_id="NP_388417.1"
                     /db_xref="EnsemblGenomes-Gn:BSU05360"
                     /db_xref="EnsemblGenomes-Tr:CAB12343"
                     /db_xref="GOA:P96680"
                     /db_xref="InterPro:IPR000620"
                     /db_xref="SubtiList:BG12150"
                     /db_xref="UniProtKB/Swiss-Prot:P96680"
                     /translation="MRKKTVQIMISHSLMIGLWASAFPGIRAGLEGYTPEHLALFRLL
                     IGSMALLLFAVLTQMRLPDLKDIPAIFLLGFLGFAFYHILLNIGEKTVSAGVASLLVT
                     TAPIFSAMLSRLFYKEHFGFTKWLGSMISLLGVLLIAFGAGDFTYSMSGILVILLAAF
                     SESIYFVFQARYIKKYGFIPFVTFTIWGGTIPMLVFLPGLGEEMMNASISATLSIVYL
                     GLLPTVIPYFALAYVTSFVGASEATLSLYVTPALALIISWLWIGEIPTLLSLLGGVVT
                     VGGVCFTYLKVNKMNKIFITHFSAKRVKKL*"
                     /label="ydfC CDS"
     gene            complement(543593..544513)
                     /gene="ydfC"
                     /locus_tag="BSU_05360"
                     /old_locus_tag="BSU05360"
                     /label="ydfC gene"
     CDS             544646..546094
                     /gene="ydfD"
                     /locus_tag="BSU_05370"
                     /old_locus_tag="BSU05370"
                     /function="16.3: Control"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 15223311, 28348215;
                     Product type r: regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="putative PLP-dependent transcriptional
                     regulator"
                     /protein_id="NP_388418.1"
                     /db_xref="EnsemblGenomes-Gn:BSU05370"
                     /db_xref="EnsemblGenomes-Tr:CAB12344"
                     /db_xref="GOA:P96681"
                     /db_xref="InterPro:IPR000524"
                     /db_xref="InterPro:IPR004839"
                     /db_xref="InterPro:IPR015421"
                     /db_xref="InterPro:IPR015422"
                     /db_xref="InterPro:IPR015424"
                     /db_xref="InterPro:IPR036388"
                     /db_xref="InterPro:IPR036390"
                     /db_xref="SubtiList:BG12151"
                     /db_xref="UniProtKB/Swiss-Prot:P96681"
                     /translation="MSFPEEKKMKKLPKYRQIVHFIKEKIGNGEWPIGSKIPSQRTLA
                     KDFQVNRSTVITALEELMADGLIEGTMGKGTVVINNTWTLMAKNSAPDWDQYVTSGIQ
                     MPSRKIVQEINQSESNTDLIQLSKGELSAEIFPLAVMKEMMGKVSQHMEAFGYEEPKG
                     YLPLREALSNYLKTIGINVSSSSILIVSGALQALQLISMGLLQRGSTVYLDQPSYLYS
                     LHVFQSAGMKLTGLPMDNEGLLPENVHLTRGERGRAILYTNPCFHNPTGILMSKKRRE
                     EILAVSENTQLPIIEDDIYRELWIDEIPPYPIKTIDKNGHVLYIGSLSKTLSPGLRIG
                     WIVGPEPVIERLSDIKMQTDYGSSSLSQRVAAEWFTSGHYQQHVEKVRQQLKVRRELA
                     LSALETHLKEVATWNIPKGGFFVWIKILPSISMKLLYTKALSKGILINLGSIYAQEKG
                     NYIRLSYAYASLEDLQKGIYELGLMIKELASR*"
                     /label="ydfD CDS"
     gene            544646..546094
                     /gene="ydfD"
                     /locus_tag="BSU_05370"
                     /old_locus_tag="BSU05370"
                     /label="ydfD gene"
     CDS             complement(546212..546835)
                     /gene="ydfE"
                     /locus_tag="BSU_05380"
                     /old_locus_tag="BSU05380"
                     /function="16.8: Protect"
                     /function="16.11: Scavenge (Catabolism)"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative flavoprotein"
                     /protein_id="NP_388419.1"
                     /db_xref="EnsemblGenomes-Gn:BSU05380"
                     /db_xref="EnsemblGenomes-Tr:CAB12345"
                     /db_xref="GOA:P96682"
                     /db_xref="InterPro:IPR002563"
                     /db_xref="InterPro:IPR012349"
                     /db_xref="SubtiList:BG12152"
                     /db_xref="UniProtKB/Swiss-Prot:P96682"
                     /translation="MDIKKQDTRRFKEIKPKIMYYGTSTFLLTTLNEDGTTNISPMSS
                     SWALGHYIILGVGLGGKAIDNLERHKECVINLPGPDLWENVERISSYSGKKSIPPLKK
                     QIGFTYKKEKYEAAGLTPLQSKTVSPTRIKECPIQIEAEVKHIRLPEYESSFAIVETQ
                     ALHFHAEESIILDENHINPSKWSPLIYNFRHYFGLGREVGKTFRSET*"
                     /label="ydfE CDS"
     gene            complement(546212..546835)
                     /gene="ydfE"
                     /locus_tag="BSU_05380"
                     /old_locus_tag="BSU05380"
                     /label="ydfE gene"
     promotor_-10    complement(546859..546878)
                     /Source="Nicolas_upshift_promotors"
                     /id="U414"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.398601398601399"
                     /psig="0.999000999001"
                     /xcortree=2726
                     /SigmaFactorBS="atattaggattcatgattttcctccttacattcatatttCGA
                     TGATagttgaaatgttaaTCCTTTACAATATAAATGTAagcgtgacaaggaggaaaaa
                     a"
                     /listShort="ydfE"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     promotor_-35    546867..546874
                     /Source="Nicolas_upshift_promotors"
                     /id="U415"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.815184815184815"
                     /psig=1
                     /xcortree=2389
                     /SigmaFactorBS="tccaacgttttttcctccttgtcacgcttacatttaTATTGT
                     AAaggattaacatttcAACTATCATCGAAATATGAAtgtaaggaggaaaatcatgaat
                     c"
                     /listShort="ydfF"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     upshifts        complement(546878)
                     /Source="Nicolas_upshifts"
                     /id="U414"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.398601398601399"
                     /psig="0.999000999001"
                     /xcortree=2726
                     /SigmaFactorBS="atattaggattcatgattttcctccttacattcatatttCGA
                     TGATagttgaaatgttaaTCCTTTACAATATAAATGTAagcgtgacaaggaggaaaaa
                     a"
                     /listShort="ydfE"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-10    546889..546908
                     /Source="Nicolas_upshift_promotors"
                     /id="U415"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.815184815184815"
                     /psig=1
                     /xcortree=2389
                     /SigmaFactorBS="tccaacgttttttcctccttgtcacgcttacatttaTATTGT
                     AAaggattaacatttcAACTATCATCGAAATATGAAtgtaaggaggaaaatcatgaat
                     c"
                     /listShort="ydfF"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        546891
                     /Source="Nicolas_upshifts"
                     /id="U415"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.815184815184815"
                     /psig=1
                     /xcortree=2389
                     /SigmaFactorBS="tccaacgttttttcctccttgtcacgcttacatttaTATTGT
                     AAaggattaacatttcAACTATCATCGAAATATGAAtgtaaggaggaaaatcatgaat
                     c"
                     /listShort="ydfF"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(546893..546899)
                     /Source="Nicolas_upshift_promotors"
                     /id="U414"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.398601398601399"
                     /psig="0.999000999001"
                     /xcortree=2726
                     /SigmaFactorBS="atattaggattcatgattttcctccttacattcatatttCGA
                     TGATagttgaaatgttaaTCCTTTACAATATAAATGTAagcgtgacaaggaggaaaaa
                     a"
                     /listShort="ydfE"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             546925..547605
                     /gene="ydfF"
                     /locus_tag="BSU_05390"
                     /old_locus_tag="BSU05390"
                     /function="16.3: Control"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; Product type r: regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="putative transcriptional regulator"
                     /protein_id="NP_388420.1"
                     /db_xref="EnsemblGenomes-Gn:BSU05390"
                     /db_xref="EnsemblGenomes-Tr:CAB12346"
                     /db_xref="GOA:P96683"
                     /db_xref="InterPro:IPR001845"
                     /db_xref="InterPro:IPR011991"
                     /db_xref="InterPro:IPR036388"
                     /db_xref="InterPro:IPR036390"
                     /db_xref="SubtiList:BG12153"
                     /db_xref="UniProtKB/Swiss-Prot:P96683"
                     /translation="MNPNIAKISSLLSDPSRSSILLSLMDGRIHPAGELAYLANIKPQ
                     TASFHLNKLLEAKLISVEKHGRHRYYRLADSDAANVIEQLLHIAPKAKVKSLKESKEK
                     KDLHFARTCYDHLAGYVGVQMAHSLVEQGMLKKVDLNFEVTSEGALFFSKLGINEEQQ
                     RNKRRAFARCCLDWSERQHHIAGALGNALLVRMLEEEWIVRMPKTRAIRITQSGKIAF
                     EKHLNVKI*"
                     /label="ydfF CDS"
     gene            546925..547605
                     /gene="ydfF"
                     /locus_tag="BSU_05390"
                     /old_locus_tag="BSU05390"
                     /label="ydfF gene"
     downshifts      547638
                     /Source="Nicolas_upshifts"
                     /id="D257"
                     /incds=0
                     /nref=113
                     /ntot=245
                     /MaxReadThrough="0.50202"
                     /MaxDrop="4.24716"
                     /score="-7.74889591"
                     /energy="-4.5"
                     /TU="U415"
                     /idTUdmin="U415"
                     /TUdmin="-22"
                     /isTUend="TRUE"
                     /label="downshifts"
     CDS             complement(547685..548128)
                     /gene="ydfG"
                     /locus_tag="BSU_05400"
                     /old_locus_tag="BSU05400"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved hypothetical protein"
                     /protein_id="NP_388421.1"
                     /db_xref="EnsemblGenomes-Gn:BSU05400"
                     /db_xref="EnsemblGenomes-Tr:CAB12347"
                     /db_xref="GOA:P96684"
                     /db_xref="InterPro:IPR003779"
                     /db_xref="InterPro:IPR004675"
                     /db_xref="InterPro:IPR029032"
                     /db_xref="SubtiList:BG12154"
                     /db_xref="UniProtKB/Swiss-Prot:P96684"
                     /translation="MSQRVSYYEIAPEGMKIMMDMEKYTKQSSINRTTRELIKIRVSQ
                     MNGCAFCIDMHTSDARKMGETEQRIYCLHAWNECDFYSPEEKAALELSEHITLIPSKR
                     VPDELYHRVREHYDEEQYVDLVLIINQINSWNRISIAMGNRAASK*"
                     /label="ydfG CDS"
     gene            complement(547685..548128)
                     /gene="ydfG"
                     /locus_tag="BSU_05400"
                     /old_locus_tag="BSU05400"
                     /label="ydfG gene"
     downshifts      complement(547690)
                     /Source="Nicolas_upshifts"
                     /id="D258"
                     /incds=0
                     /nref=10
                     /ntot=187
                     /MaxReadThrough="1.76648"
                     /MaxDrop="3.73786"
                     /score="0.225628164"
                     /energy="-10.8"
                     /TU="NA"
                     /idTUdmin="U416"
                     /TUdmin=2
                     /isTUend="TRUE"
                     /label="downshifts"
     promotor_-10    complement(548151..548170)
                     /Source="Nicolas_upshift_promotors"
                     /id="U416"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.96903096903097"
                     /psig=1
                     /xcortree=2022
                     /SigmaFactorBS="gcttctttccaaaagacgctgaaacagctgtcattcaaaccg
                     caCATTGGTAaaatgatcaatacCGGGATACAATCTAGGTATTctatggaaaggagtc
                     t"
                     /listShort="ydfG"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(548175)
                     /Source="Nicolas_upshifts"
                     /id="U416"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.96903096903097"
                     /psig=1
                     /xcortree=2022
                     /SigmaFactorBS="gcttctttccaaaagacgctgaaacagctgtcattcaaaccg
                     caCATTGGTAaaatgatcaatacCGGGATACAATCTAGGTATTctatggaaaggagtc
                     t"
                     /listShort="ydfG"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(548184..548191)
                     /Source="Nicolas_upshift_promotors"
                     /id="U416"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.96903096903097"
                     /psig=1
                     /xcortree=2022
                     /SigmaFactorBS="gcttctttccaaaagacgctgaaacagctgtcattcaaaccg
                     caCATTGGTAaaatgatcaatacCGGGATACAATCTAGGTATTctatggaaaggagtc
                     t"
                     /listShort="ydfG"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             complement(548214..548393)
                     /gene="ydzP"
                     /locus_tag="BSU_05408"
                     /old_locus_tag="BSU05408"
                     /function="18: Unknown function"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 5: Unknown function"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_003097685.1"
                     /db_xref="EnsemblGenomes-Gn:BSU05408"
                     /db_xref="EnsemblGenomes-Tr:CAX52558"
                     /db_xref="GOA:C0H3W0"
                     /db_xref="UniProtKB/Swiss-Prot:C0H3W0"
                     /translation="MNMYWFLGALLYFLIGTYIFIRVTRDSQSGSWILLALAAPLIIA
                     GYPYFYSKKLLSKRR*"
                     /label="ydzP CDS"
     gene            complement(548214..548393)
                     /gene="ydzP"
                     /locus_tag="BSU_05408"
                     /old_locus_tag="BSU05408"
                     /label="ydzP gene"
     CDS             complement(548390..548533)
                     /gene="ydzQ"
                     /locus_tag="BSU_05409"
                     /old_locus_tag="BSU05409"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 5: Unknown function"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_003097686.1"
                     /db_xref="EnsemblGenomes-Gn:BSU05409"
                     /db_xref="EnsemblGenomes-Tr:CAX52559"
                     /db_xref="UniProtKB/Swiss-Prot:C0H3W1"
                     /translation="MKSIDLTILSLKRKGIRTEKVLKNQNPDRLSHMTDKNAQPKSKE
                     KEE*"
                     /label="ydzQ CDS"
     gene            complement(548390..548533)
                     /gene="ydzQ"
                     /locus_tag="BSU_05409"
                     /old_locus_tag="BSU05409"
                     /label="ydzQ gene"
     promotor_-35    548484..548486
                     /Source="Nicolas_upshift_promotors"
                     /id="U417"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.649350649350649"
                     /psig="0.998001998001998"
                     /xcortree=2487
                     /SigmaFactorBS="tctgattttttaataccttttcggtcCGGattccttttctct
                     ttAATGATAAAATTGTGAGATCaatcgatttcaatgatgatcattccttcaatgaata
                     g"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    548502..548521
                     /Source="Nicolas_upshift_promotors"
                     /id="U417"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.649350649350649"
                     /psig="0.998001998001998"
                     /xcortree=2487
                     /SigmaFactorBS="tctgattttttaataccttttcggtcCGGattccttttctct
                     ttAATGATAAAATTGTGAGATCaatcgatttcaatgatgatcattccttcaatgaata
                     g"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        548518
                     /Source="Nicolas_upshifts"
                     /id="U417"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.649350649350649"
                     /psig="0.998001998001998"
                     /xcortree=2487
                     /SigmaFactorBS="tctgattttttaataccttttcggtcCGGattccttttctct
                     ttAATGATAAAATTGTGAGATCaatcgatttcaatgatgatcattccttcaatgaata
                     g"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             548801..550024
                     /gene="ydfH"
                     /locus_tag="BSU_05410"
                     /old_locus_tag="BSU05410"
                     /function="16.3: Control"
                     /function="16.12: Sense"
                     /experiment="publication(s) with functional evidences,
                     PMID:11717295, 15941986"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 11717295, 15941986;
                     Product type rc: receptor"
                     /codon_start=1
                     /transl_table=11
                     /product="two-component sensor histidine kinase [YdfI]"
                     /protein_id="NP_388422.1"
                     /db_xref="EnsemblGenomes-Gn:BSU05410"
                     /db_xref="EnsemblGenomes-Tr:CAB12348"
                     /db_xref="GOA:P96685"
                     /db_xref="InterPro:IPR003594"
                     /db_xref="InterPro:IPR011712"
                     /db_xref="InterPro:IPR036890"
                     /db_xref="SubtiList:BG12155"
                     /db_xref="UniProtKB/Swiss-Prot:P96685"
                     /translation="MLIRNPFKDKYYSHDRRALNMLALRVPGLAFILMIYIASIVLQF
                     VSGGWSILLLYAFTILIAIFALLHWHSYRWVKKRVILYFAVQGLITFALANLMTGFFI
                     LVIIGLYAFLIGQIIGMADRRRTFLILYLLLLLVINSAYHLHKGEVLHFIVIAAPIMI
                     VIITYAATFFAQVDEKIKAQLTLERLELAHQQVEQLTLQNERQRMARDLHDTLAQGLV
                     SLNMQLDAIHVHLAKGNTERAKEIIQQSMKRVKSTIADARSAIDDLRSKSEEIGVLKE
                     RITSLMDHFIESTGMACLLDYRLHQVLDVRTAENCYYIIGECMTNAAKHAEAKTIWIS
                     IWDDEKGRLHLTVKDNGKGFDVEKGKKKRGHYGLLGIQERVRAINGQFNIKSTKLKGT
                     QIEITVPIQGEMQDE*"
                     /label="ydfH CDS"
     gene            548801..550024
                     /gene="ydfH"
                     /locus_tag="BSU_05410"
                     /old_locus_tag="BSU05410"
                     /label="ydfH gene"
     CDS             550017..550658
                     /gene="ydfI"
                     /locus_tag="BSU_05420"
                     /old_locus_tag="BSU05420"
                     /function="16.3: Control"
                     /experiment="publication(s) with functional evidences,
                     PMID:11717295, 15941986"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 11717295, 15941986;
                     Product type r: regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="two-component response regulator [YdfH]"
                     /protein_id="NP_388423.1"
                     /db_xref="EnsemblGenomes-Gn:BSU05420"
                     /db_xref="EnsemblGenomes-Tr:CAB12349"
                     /db_xref="GOA:P96686"
                     /db_xref="InterPro:IPR000792"
                     /db_xref="InterPro:IPR001789"
                     /db_xref="InterPro:IPR011006"
                     /db_xref="InterPro:IPR016032"
                     /db_xref="InterPro:IPR036388"
                     /db_xref="SubtiList:BG12156"
                     /db_xref="UniProtKB/Swiss-Prot:P96686"
                     /translation="MNKVLIVDDHLVVREGLKLLIETNDQYTIIGEAENGKVAVRLAD
                     ELEPDIILMDLYMPEMSGLEAIKQIKEKHDTPIIILTTYNEDHLMIEGIELGAKGYLL
                     KDTSSETLFHTMDAAIRGNVLLQPDILKRLQEIQFERMKKQRNETQLTEKEVIVLKAI
                     AKGLKSKAIAFDLGVSERTVKSRLTSIYNKLGANSRTEAVTIAMQKGILTIDN*"
                     /label="ydfI CDS"
     gene            550017..550658
                     /gene="ydfI"
                     /locus_tag="BSU_05420"
                     /old_locus_tag="BSU05420"
                     /label="ydfI gene"
     downshifts      550652
                     /Source="Nicolas_upshifts"
                     /id="D259"
                     /incds=0
                     /nref=5
                     /ntot=147
                     /MaxReadThrough="1.15378"
                     /MaxDrop="2.65603"
                     /score="8.33575703"
                     /energy="-6.4"
                     /TU="NA"
                     /idTUdmin="U419"
                     /TUdmin="-176"
                     /isTUend="FALSE"
                     /label="downshifts"
     promotor_-10    complement(550685..550704)
                     /Source="Nicolas_upshift_promotors"
                     /id="U418"
                     /multdbtbs="-"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp="0.796203796203796"
                     /psig="0.999000999001"
                     /xcortree=1843
                     /SigmaFactorBS="tcctttcaacacattgcttgatcacattctttctcattgtaG
                     TTGACAAtgaaatgaaaaaaACGTACATTCGGGCATGTACgtttgggcaattttcaaa
                     t"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(550706)
                     /Source="Nicolas_upshifts"
                     /id="U418"
                     /multdbtbs="-"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp="0.796203796203796"
                     /psig="0.999000999001"
                     /xcortree=1843
                     /SigmaFactorBS="tcctttcaacacattgcttgatcacattctttctcattgtaG
                     TTGACAAtgaaatgaaaaaaACGTACATTCGGGCATGTACgtttgggcaattttcaaa
                     t"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(550718..550725)
                     /Source="Nicolas_upshift_promotors"
                     /id="U418"
                     /multdbtbs="-"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp="0.796203796203796"
                     /psig="0.999000999001"
                     /xcortree=1843
                     /SigmaFactorBS="tcctttcaacacattgcttgatcacattctttctcattgtaG
                     TTGACAAtgaaatgaaaaaaACGTACATTCGGGCATGTACgtttgggcaattttcaaa
                     t"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-35    550766..550771
                     /Source="Nicolas_upshift_promotors"
                     /id="U419"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.833166833166833"
                     /psig="0.833166833166833"
                     /xcortree=1016
                     /SigmaFactorBS="actacaatgagaaagaatgtgatcaagcaatgtgttgaaagg
                     AGATTAtcatgtcaaaaatgTTATATACATTAGGAGGATgggttgctcgcaatcgcat
                     a"
                     /listShort="ydfJ"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             550774..552948
                     /gene="ydfJ"
                     /locus_tag="BSU_05430"
                     /old_locus_tag="BSU05430"
                     /function="16.1: Circulate"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 15941986; Product type
                     t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="putative proton metabolite efflux transporter"
                     /protein_id="NP_388424.1"
                     /db_xref="EnsemblGenomes-Gn:BSU05430"
                     /db_xref="EnsemblGenomes-Tr:CAB12350"
                     /db_xref="GOA:P96687"
                     /db_xref="InterPro:IPR000731"
                     /db_xref="InterPro:IPR004869"
                     /db_xref="SubtiList:BG12157"
                     /db_xref="UniProtKB/Swiss-Prot:P96687"
                     /translation="MSKMLYTLGGWVARNRIKAICAWIVVLVAAIGLAVTLKPSFSED
                     MSIPDTPSEKAMDVIQKEFPHGPDKGSIRVIFGAGDGEKLTGKPAKKAIEDTFKEISK
                     DDSVDSIASPFVTGTIAKDGTVAYADIQYKSSADDIKDYSIKHLKDSLKMADDEGLQT
                     ELSGDVPGAEMEIGGVSEIVGIILAFVVLAITFGSLLIAGLPILTALIGLGVSIGLVL
                     IGTQVFDIASVSLSLAGMIGLAVGIDYALFIFTKHRQFLGEGIQKNESIARAVGTAGS
                     AVVFAGLTVIVALCGLTVVNIPFMSAMGLTAGLSVLMAVLASITLVPAVLSIAGKRMI
                     PKSNKKIEKQSTETNVWGRFVTKNPIMLSVCSILILIVISIPSMHLELGLPDAGMKAK
                     DNPDRRAYDLLAEGFGEGFNGQLTIVADATNATENKAEAFADAVKEIKGLDHVASVTP
                     AMPNKEGNFAIITVVPETGPNDVTTKDLVHDVRSLSDKNGVDLLVTGSTAVNIDISDR
                     LNDAIPVFAVLIVGFAFVLLTIVFRSLLVPLVAVAGFMLTMTATLGICVFVLQDGNLI
                     DFFKIPEKGPILAFLPILSIGILFGLAMDYQVFLVSRMREEYVKTNNPVQAIQAGLKH
                     SGPVVTAAGLIMIFVFAGFIFAGEASIKANGLALSFGVLFDAFIVRMTLIPSVMKLMG
                     NAAWYLPKWLDKIIPNVDIEGHQLTKEIQPEIDHEQKKQISV*"
                     /label="ydfJ CDS"
     gene            550774..552948
                     /gene="ydfJ"
                     /locus_tag="BSU_05430"
                     /old_locus_tag="BSU05430"
                     /label="ydfJ gene"
     upshifts        550784
                     /Source="Nicolas_upshifts"
                     /id="U419"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.833166833166833"
                     /psig="0.833166833166833"
                     /xcortree=1016
                     /SigmaFactorBS="actacaatgagaaagaatgtgatcaagcaatgtgttgaaagg
                     AGATTAtcatgtcaaaaatgTTATATACATTAGGAGGATgggttgctcgcaatcgcat
                     a"
                     /listShort="ydfJ"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-10    550786..550804
                     /Source="Nicolas_upshift_promotors"
                     /id="U419"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.833166833166833"
                     /psig="0.833166833166833"
                     /xcortree=1016
                     /SigmaFactorBS="actacaatgagaaagaatgtgatcaagcaatgtgttgaaagg
                     AGATTAtcatgtcaaaaatgTTATATACATTAGGAGGATgggttgctcgcaatcgcat
                     a"
                     /listShort="ydfJ"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     misc_feature    complement(551850..551868)
                     /Source="Nicolas_upshift_promotors"
                     /id="U420"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.763236763236763"
                     /psig="0.763236763236763"
                     /xcortree=1205
                     /SigmaFactorBS="atgcatagatgggatactaatgacgatcaaaatcagaatgct
                     GCATACACTTAGCATGATAggatttttggtgacaaagcgtccccagacatttgtttca
                     g"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_single_box"
                     /note="Geneious type: promotor_single_box"
     upshifts        complement(551850)
                     /Source="Nicolas_upshifts"
                     /id="U420"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.763236763236763"
                     /psig="0.763236763236763"
                     /xcortree=1205
                     /SigmaFactorBS="atgcatagatgggatactaatgacgatcaaaatcagaatgct
                     GCATACACTTAGCATGATAggatttttggtgacaaagcgtccccagacatttgtttca
                     g"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     S_feature       complement(552952..553359)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_591895_592302_c"
                     /HighExp="Paraq, H2O2, Oxctl, aero, LBGexp, dia15, GM 150,
                     M/G, ferm, nit"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig=1
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S187"
     promotor_-35    552969..552973
                     /Source="Nicolas_upshift_promotors"
                     /id="U421"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.986013986013986"
                     /psig=1
                     /xcortree=3115
                     /SigmaFactorBS="aacaaaagaaacaaatcagtgtgtaatagaaaaagcagatct
                     tttaTGATCtgctcttttgctTATGGTAGTATTTAGAAGATgaagtcggcagttaaaa
                     g"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     upshifts        552983
                     /Source="Nicolas_upshifts"
                     /id="U421"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.986013986013986"
                     /psig=1
                     /xcortree=3115
                     /SigmaFactorBS="aacaaaagaaacaaatcagtgtgtaatagaaaaagcagatct
                     tttaTGATCtgctcttttgctTATGGTAGTATTTAGAAGATgaagtcggcagttaaaa
                     g"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-10    552986..553005
                     /Source="Nicolas_upshift_promotors"
                     /id="U421"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.986013986013986"
                     /psig=1
                     /xcortree=3115
                     /SigmaFactorBS="aacaaaagaaacaaatcagtgtgtaatagaaaaagcagatct
                     tttaTGATCtgctcttttgctTATGGTAGTATTTAGAAGATgaagtcggcagttaaaa
                     g"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     downshifts      complement(552997)
                     /Source="Nicolas_upshifts"
                     /id="D260"
                     /incds=0
                     /nref=22
                     /ntot=134
                     /MaxReadThrough="-0.100210000000001"
                     /MaxDrop="3.637"
                     /score="4.29161871"
                     /energy="-8.8"
                     /TU="NA"
                     /idTUdmin="U422"
                     /TUdmin="-3"
                     /isTUend="TRUE"
                     /label="downshifts"
     CDS             complement(553360..554262)
                     /gene="cesA"
                     /locus_tag="BSU_05440"
                     /old_locus_tag="BSU05440"
                     /EC_number="3.1.1.1"
                     /function="16.8: Protect"
                     /function="16.6: Maintain"
                     /function="16.11: Scavenge (Catabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:7765103, 22248594, 24418394"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 7765103, 22248594,
                     24418394; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="carboxylesterase NP"
                     /protein_id="NP_388425.1"
                     /db_xref="EnsemblGenomes-Gn:BSU05440"
                     /db_xref="EnsemblGenomes-Tr:CAB12351"
                     /db_xref="GOA:P96688"
                     /db_xref="InterPro:IPR000073"
                     /db_xref="InterPro:IPR029058"
                     /db_xref="PDB:2R11"
                     /db_xref="SubtiList:BG11957"
                     /db_xref="UniProtKB/Swiss-Prot:P96688"
                     /translation="MSNHSSSIPELSDNGIRYYQTYNESLSLWPVRCKSFYISTRFGQ
                     THVIASGPEDAPPLVLLHGALFSSTMWYPNIADWSSKYRTYAVDIIGDKNKSIPENVS
                     GTRTDYANWLLDVFDNLGIEKSHMIGLSLGGLHTMNFLLRMPERVKSAAILSPAETFL
                     PFHHDFYKYALGLTASNGVETFLNWMMNDQNVLHPIFVKQFKAGVMWQDGSRNPNPNA
                     DGFPYVFTDEELRSARVPILLLLGEHEVIYDPHSALHRASSFVPDIEAEVIKNAGHVL
                     SMEQPTYVNERVMRFFNAETGISR*"
                     /label="cesA CDS"
     gene            complement(553360..554262)
                     /gene="cesA"
                     /locus_tag="BSU_05440"
                     /old_locus_tag="BSU05440"
                     /label="cesA gene"
     S_feature       complement(554263..554358)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_593206_593301_c"
                     /HighExp="nit, ferm, aero, LoTm, M/G, GM 150, Diami,
                     Paraq, dia15, LBGexp"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig=1
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S188"
     promotor_-10    complement(554338..554357)
                     /Source="Nicolas_upshift_promotors"
                     /id="U422"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.834165834165834"
                     /psig=1
                     /xcortree=2448
                     /SigmaFactorBS="tcaataatctgtttcaatcgtttttttccttttcatcttgGA
                     TTTGACgtctaataacaacTGTATTATATTGTAAATAAAgtctgttatatcaaaatca
                     g"
                     /listShort="S188, nap, S187"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(554358)
                     /Source="Nicolas_upshifts"
                     /id="U422"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.834165834165834"
                     /psig=1
                     /xcortree=2448
                     /SigmaFactorBS="tcaataatctgtttcaatcgtttttttccttttcatcttgGA
                     TTTGACgtctaataacaacTGTATTATATTGTAAATAAAgtctgttatatcaaaatca
                     g"
                     /listShort="S188, nap, S187"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(554371..554378)
                     /Source="Nicolas_upshift_promotors"
                     /id="U422"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.834165834165834"
                     /psig=1
                     /xcortree=2448
                     /SigmaFactorBS="tcaataatctgtttcaatcgtttttttccttttcatcttgGA
                     TTTGACgtctaataacaacTGTATTATATTGTAAATAAAgtctgttatatcaaaatca
                     g"
                     /listShort="S188, nap, S187"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             complement(554464..555153)
                     /gene="ydfK"
                     /locus_tag="BSU_05450"
                     /old_locus_tag="BSU05450"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 10200972, 15849754,
                     16850406; Product type m: membrane component"
                     /codon_start=1
                     /transl_table=11
                     /product="putative integral inner membrane protein"
                     /protein_id="NP_388426.1"
                     /db_xref="EnsemblGenomes-Gn:BSU05450"
                     /db_xref="EnsemblGenomes-Tr:CAB12352"
                     /db_xref="GOA:P96689"
                     /db_xref="InterPro:IPR007563"
                     /db_xref="SubtiList:BG12158"
                     /db_xref="UniProtKB/Swiss-Prot:P96689"
                     /translation="MFGTIFNTVMIIAGSIIGGIFKKGIKDEYQDILMQAMGFAAVAL
                     GINAITQHLPDSKYPILFIVSLAIGGLLGQIINLELRFNKLVNKFSKSNLAEGLSTAV
                     LLFCIGSLSILGPVEAALHGDYTYLLTNGMLDGITSIVLASTFGFGIAAAALVLFSWQ
                     GSIYLFAQVMESAINTDLINEITIVGGILILSSGLSILGIKKFKTLNLLPSLLIPPVV
                     IFVIHAFGLRF*"
                     /label="ydfK CDS"
     gene            complement(554464..555153)
                     /gene="ydfK"
                     /locus_tag="BSU_05450"
                     /old_locus_tag="BSU05450"
                     /label="ydfK gene"
     CDS             complement(555243..556055)
                     /gene="ydfL"
                     /locus_tag="BSU_05460"
                     /old_locus_tag="BSU05460"
                     /function="16.3: Control"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; Product type r: regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="putative transcriptional regulator of efflux
                     transporter"
                     /protein_id="NP_388427.1"
                     /db_xref="EnsemblGenomes-Gn:BSU05460"
                     /db_xref="EnsemblGenomes-Tr:CAB12353"
                     /db_xref="GOA:P96690"
                     /db_xref="InterPro:IPR000551"
                     /db_xref="InterPro:IPR009061"
                     /db_xref="InterPro:IPR010499"
                     /db_xref="InterPro:IPR011256"
                     /db_xref="InterPro:IPR029442"
                     /db_xref="SubtiList:BG12159"
                     /db_xref="UniProtKB/Swiss-Prot:P96690"
                     /translation="MKEFFSIGEVSKLFNVKISALRYYDEIGLLKPEYKDEQTNYRYY
                     STQQFERLDTIKYLRALGLPINKLLDFYNSQNTNTLLHLLKSQQVEIDRKKKELERIE
                     RKISRRITHIEDAVNMPLHQISKIKLPAMRVAYLQHEYVLGHDIEHSLAELRTHLNVN
                     EDIFIGKIGLSISAANVKAKQFDKYSSIFMILEDENEKTSSEIIFPSREYLQIRFKGS
                     HPEAEPYYKKLLAYMKEHHYEVAGDSIEITLIDYGITNNLDNYVTEILLPIK*"
                     /label="ydfL CDS"
     gene            complement(555243..556055)
                     /gene="ydfL"
                     /locus_tag="BSU_05460"
                     /old_locus_tag="BSU05460"
                     /label="ydfL gene"
     promotor_-10    complement(556084..556103)
                     /Source="Nicolas_upshift_promotors"
                     /id="U423"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.911088911088911"
                     /psig="0.998001998001998"
                     /xcortree=1898
                     /SigmaFactorBS="tttttagaaggagttttttctttatgctgcaAACTTTACctt
                     tagtactcgccgTACTATATAATGTGTGTATAtcaatcataggacagaaaggttgtta
                     g"
                     /listShort="ydfL"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(556097)
                     /Source="Nicolas_upshifts"
                     /id="U423"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.911088911088911"
                     /psig="0.998001998001998"
                     /xcortree=1898
                     /SigmaFactorBS="tttttagaaggagttttttctttatgctgcaAACTTTACctt
                     tagtactcgccgTACTATATAATGTGTGTATAtcaatcataggacagaaaggttgtta
                     g"
                     /listShort="ydfL"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(556119..556126)
                     /Source="Nicolas_upshift_promotors"
                     /id="U423"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.911088911088911"
                     /psig="0.998001998001998"
                     /xcortree=1898
                     /SigmaFactorBS="tttttagaaggagttttttctttatgctgcaAACTTTACctt
                     tagtactcgccgTACTATATAATGTGTGTATAtcaatcataggacagaaaggttgtta
                     g"
                     /listShort="ydfL"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             complement(556166..557059)
                     /gene="mneP"
                     /locus_tag="BSU_05470"
                     /old_locus_tag="BSU05470"
                     /function="16.1: Circulate"
                     /experiment="publication(s) with functional evidences,
                     PMID:27748968"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 27748968; Product type t:
                     transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="primary Mn(II) efflux pump"
                     /protein_id="NP_388428.2"
                     /db_xref="EnsemblGenomes-Gn:BSU05470"
                     /db_xref="EnsemblGenomes-Tr:CAB12354"
                     /db_xref="GOA:C0SP78"
                     /db_xref="InterPro:IPR002524"
                     /db_xref="InterPro:IPR027469"
                     /db_xref="InterPro:IPR027470"
                     /db_xref="InterPro:IPR036837"
                     /db_xref="SubtiList:BG12160"
                     /db_xref="UniProtKB/Swiss-Prot:C0SP78"
                     /translation="MASEREQISRKVALIALIANLILMAGKVFFGLVGDSEAVFADGI
                     HSAADVVASIAVLAVIGISNKPPDQDHPFGHGKAEVISEAIVGIILVIVSVYILIEAI
                     LSFVKGPSVPQYSALFAALISYVAKEILYRYSIKQGKKWNSKAIIAIAYDHKGDIVAS
                     LAAFIGVLLAIIGNSRGWSYLLYADAIASAIVAYLIFKISMELIRPSVDVLMEKSVDP
                     ELIEEYKAVIFQCDQVKRIDRIRAREHGHYKLLDVRLSLDHDLTIKQGHDIAREIRNE
                     IKRQFSDVEEVLIHVNPYFEE*"
                     /label="mneP CDS"
     gene            complement(556166..557059)
                     /gene="mneP"
                     /locus_tag="BSU_05470"
                     /old_locus_tag="BSU05470"
                     /label="mneP gene"
     downshifts      complement(556186)
                     /Source="Nicolas_upshifts"
                     /id="D261"
                     /incds=0
                     /nref=23
                     /ntot=121
                     /MaxReadThrough="1.07979"
                     /MaxDrop="4.0938"
                     /score="12.079524"
                     /energy="-6.2"
                     /TU="NA"
                     /idTUdmin="U424"
                     /TUdmin="-2"
                     /isTUend="TRUE"
                     /label="downshifts"
     S_feature       complement(557060..557152)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_596003_596095_c"
                     /HighExp="LPh, HPh, LPhT, UNK1, MG t5, MG 5, MG 15, BMM,
                     GM 120, Fru"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig=1
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S189"
     promotor_-10    complement(557133..557152)
                     /Source="Nicolas_upshift_promotors"
                     /id="U424"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.756243756243756"
                     /psig=1
                     /xcortree=1748
                     /SigmaFactorBS="caccttatttattagtaaacaggaaacaacgttgcTATAGAC
                     CcactcgaaattgaatTGGTATGATAAACAAAGTGAttacacaggaaaggatacggag
                     a"
                     /listShort="S189, ydfM"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(557150)
                     /Source="Nicolas_upshifts"
                     /id="U424"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.756243756243756"
                     /psig=1
                     /xcortree=1748
                     /SigmaFactorBS="caccttatttattagtaaacaggaaacaacgttgcTATAGAC
                     CcactcgaaattgaatTGGTATGATAAACAAAGTGAttacacaggaaaggatacggag
                     a"
                     /listShort="S189, ydfM"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(557168..557175)
                     /Source="Nicolas_upshift_promotors"
                     /id="U424"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.756243756243756"
                     /psig=1
                     /xcortree=1748
                     /SigmaFactorBS="caccttatttattagtaaacaggaaacaacgttgcTATAGAC
                     CcactcgaaattgaatTGGTATGATAAACAAAGTGAttacacaggaaaggatacggag
                     a"
                     /listShort="S189, ydfM"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-35    557341..557348
                     /Source="Nicolas_upshift_promotors"
                     /id="U425"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.988011988011988"
                     /psig=1
                     /xcortree=3024
                     /SigmaFactorBS="agtgaaaaatttccacctaattttcaaaaaccTATTGACAtg
                     agaagatctgtaTTTTACTATTATCTCATATTcaagatattttaatttgagatatttg
                     g"
                     /listShort="ydfN, ydfO, S190, ydfP"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    557363..557382
                     /Source="Nicolas_upshift_promotors"
                     /id="U425"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.988011988011988"
                     /psig=1
                     /xcortree=3024
                     /SigmaFactorBS="agtgaaaaatttccacctaattttcaaaaaccTATTGACAtg
                     agaagatctgtaTTTTACTATTATCTCATATTcaagatattttaatttgagatatttg
                     g"
                     /listShort="ydfN, ydfO, S190, ydfP"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        557369
                     /Source="Nicolas_upshifts"
                     /id="U425"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.988011988011988"
                     /psig=1
                     /xcortree=3024
                     /SigmaFactorBS="agtgaaaaatttccacctaattttcaaaaaccTATTGACAtg
                     agaagatctgtaTTTTACTATTATCTCATATTcaagatattttaatttgagatatttg
                     g"
                     /listShort="ydfN, ydfO, S190, ydfP"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             557535..558155
                     /gene="ydfN"
                     /locus_tag="BSU_05480"
                     /old_locus_tag="BSU05480"
                     /EC_number="1.-.-.-"
                     /function="16.11: Scavenge (Catabolism)"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 17407181; Product type
                     e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative oxidoreductase"
                     /protein_id="NP_388429.1"
                     /db_xref="EnsemblGenomes-Gn:BSU05480"
                     /db_xref="EnsemblGenomes-Tr:CAB12355"
                     /db_xref="GOA:P96692"
                     /db_xref="InterPro:IPR000415"
                     /db_xref="InterPro:IPR029479"
                     /db_xref="PDB:3BEM"
                     /db_xref="SubtiList:BG12161"
                     /db_xref="UniProtKB/Swiss-Prot:P96692"
                     /translation="MAEFTHLVNERRSASNFLSGHPITKEDLNEMFELVALAPSAFNL
                     QHTKYVTVLDQDVKEKLKQAANGQYKVVSSSAVLLVLGDKQAYQQAADIYEGLKVLGI
                     LNKQEYDHMVQDTVSFYENRGEQFKRDEAIRNASLSAMMFMLSAKEKGWDTCPMIGFD
                     AEAVKRILNIDDQFEVVMMITIGKEKTESRRPRGYRKPVNEFVEYM*"
                     /label="ydfN CDS"
     gene            557535..558155
                     /gene="ydfN"
                     /locus_tag="BSU_05480"
                     /old_locus_tag="BSU05480"
                     /label="ydfN gene"
     promotor_-35    557879..557885
                     /Source="Nicolas_upshift_promotors"
                     /id="U426"
                     /multdbtbs="SigB"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp="0.993006993006993"
                     /psig="0.993006993006993"
                     /xcortree=151
                     /SigmaFactorBS="tattggggatattaaataagcaagagtatgaccacatggtgc
                     aagacacCGTTTCGttttatgaaaacaGGGGAGAACAATTTAAGAGagatgaggcgat
                     a"
                     /listShort="ydfO, S190, ydfP"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     upshifts        557890
                     /Source="Nicolas_upshifts"
                     /id="U426"
                     /multdbtbs="SigB"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp="0.993006993006993"
                     /psig="0.993006993006993"
                     /xcortree=151
                     /SigmaFactorBS="tattggggatattaaataagcaagagtatgaccacatggtgc
                     aagacacCGTTTCGttttatgaaaacaGGGGAGAACAATTTAAGAGagatgaggcgat
                     a"
                     /listShort="ydfO, S190, ydfP"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-10    557899..557917
                     /Source="Nicolas_upshift_promotors"
                     /id="U426"
                     /multdbtbs="SigB"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp="0.993006993006993"
                     /psig="0.993006993006993"
                     /xcortree=151
                     /SigmaFactorBS="tattggggatattaaataagcaagagtatgaccacatggtgc
                     aagacacCGTTTCGttttatgaaaacaGGGGAGAACAATTTAAGAGagatgaggcgat
                     a"
                     /listShort="ydfO, S190, ydfP"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     CDS             558171..559109
                     /gene="ydfO"
                     /locus_tag="BSU_05490"
                     /old_locus_tag="BSU05490"
                     /EC_number="1.13.11.-"
                     /function="16.8: Protect"
                     /function="16.11: Scavenge (Catabolism)"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 17407181; Product type
                     e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative dioxygenase"
                     /protein_id="NP_388430.1"
                     /db_xref="EnsemblGenomes-Gn:BSU05490"
                     /db_xref="EnsemblGenomes-Tr:CAB12356"
                     /db_xref="GOA:P96693"
                     /db_xref="InterPro:IPR004360"
                     /db_xref="InterPro:IPR029068"
                     /db_xref="PDB:3OAJ"
                     /db_xref="SubtiList:BG12162"
                     /db_xref="UniProtKB/Swiss-Prot:P96693"
                     /translation="MAKKTMGIHHITAIVGHPQENTDFYAGVLGLRLVKQTVNFDDPG
                     TYHLYFGNEGGKPGTIITFFPWAGARQGVIGDGQVGVTSYVVPKGAMAFWEKRLEKFN
                     VPYTKIERFGEQYVEFDDPHGLHLEIVEREEGEANTWTFGEVTPDVAIKGFGGATLLS
                     EQPDKTADLLENIMGLERVGKEGDFVRYRSAGDIGNVIDLKLTPIGRGQMGAGTVHHI
                     AWRANDDEDQLDWQRYIASHGYGVTPVRDRNYFNAIYFREHGEILFEIATDPPGFAHD
                     ETQETMGEKLMLPVQYEPHRTQIEQGLLPFEVRELD*"
                     /label="ydfO CDS"
     gene            558171..559109
                     /gene="ydfO"
                     /locus_tag="BSU_05490"
                     /old_locus_tag="BSU05490"
                     /label="ydfO gene"
     promotor_-35    559097..559100
                     /Source="Nicolas_upshift_promotors"
                     /id="U427"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp="0.658341658341658"
                     /psig="0.658341658341658"
                     /xcortree=729
                     /SigmaFactorBS="caaattgaacaagggctgctgccgtttgaagtaagAGAGtta
                     gattgatttgaCACATAAAAAATAAAGAAACatatattcaattgatgattgctggatg
                     g"
                     /listShort="S190, ydfP"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    559115..559134
                     /Source="Nicolas_upshift_promotors"
                     /id="U427"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp="0.658341658341658"
                     /psig="0.658341658341658"
                     /xcortree=729
                     /SigmaFactorBS="caaattgaacaagggctgctgccgtttgaagtaagAGAGtta
                     gattgatttgaCACATAAAAAATAAAGAAACatatattcaattgatgattgctggatg
                     g"
                     /listShort="S190, ydfP"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     S_feature       559122..559210
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_598065_598153"
                     /HighExp="Etha, BT, S6, S7, S8, G/S, GM 10, Gly, GM 15,
                     B36"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigK, SigB, SigA"
                     /TUshortPSig="0.658, 0.993, 1"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S190"
     upshifts        559122
                     /Source="Nicolas_upshifts"
                     /id="U427"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp="0.658341658341658"
                     /psig="0.658341658341658"
                     /xcortree=729
                     /SigmaFactorBS="caaattgaacaagggctgctgccgtttgaagtaagAGAGtta
                     gattgatttgaCACATAAAAAATAAAGAAACatatattcaattgatgattgctggatg
                     g"
                     /listShort="S190, ydfP"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             559211..559600
                     /gene="ydfP"
                     /locus_tag="BSU_05500"
                     /old_locus_tag="BSU05500"
                     /EC_number="1.-.-.-"
                     /function="16.8: Protect"
                     /function="16.11: Scavenge (Catabolism)"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 15306018, 15849754,
                     16850406, 17407181; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative membrane bound oxidoreductase"
                     /protein_id="NP_388431.1"
                     /db_xref="EnsemblGenomes-Gn:BSU05500"
                     /db_xref="EnsemblGenomes-Tr:CAB12357"
                     /db_xref="GOA:P96694"
                     /db_xref="InterPro:IPR032808"
                     /db_xref="SubtiList:BG12163"
                     /db_xref="UniProtKB/Swiss-Prot:P96694"
                     /translation="MEDAGLLLIRIMIGVVFLFYGTQKLFGWFGGYGIKGTGQWFESI
                     GVKPGNVAAALSGLGELVSGILFILGVFLPLGAAIITIIMLGAIVKVHGAKGFANGAG
                     GFEYNLVLIAVSIGVALIGSGAYALHF*"
                     /label="ydfP CDS"
     gene            559211..559600
                     /gene="ydfP"
                     /locus_tag="BSU_05500"
                     /old_locus_tag="BSU05500"
                     /label="ydfP gene"
     downshifts      559591
                     /Source="Nicolas_upshifts"
                     /id="D262"
                     /incds=0
                     /nref=3
                     /ntot=91
                     /MaxReadThrough="1.0642"
                     /MaxDrop="3.85597"
                     /score="-8.69038499"
                     /energy="-9.3"
                     /TU="NA"
                     /idTUdmin="U427"
                     /TUdmin=29
                     /isTUend="FALSE"
                     /label="downshifts"
     misc_feature    559714..559733
                     /Source="Nicolas_upshift_promotors"
                     /id="U428"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.665334665334665"
                     /psig="0.946053946053946"
                     /xcortree=2048
                     /SigmaFactorBS="cattttcggcaagcttgcaggtactctgcaaagcaaaaaagc
                     ggatatcataaatataAATCTGTATAGTGAATGATAcgtattgatgagcttggtcatg
                     a"
                     /listShort="S191, ydfQ"
                     /GFF_Attribute="listLong"
                     /label="promotor_single_box"
                     /note="Geneious type: promotor_single_box"
     S_feature       559716..559785
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_598659_598728"
                     /HighExp="Diami, dia5, H2O2, dia15, Etha, S8, Paraq, Salt,
                     LPhT, G180"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.946"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S191"
     upshifts        559716
                     /Source="Nicolas_upshifts"
                     /id="U428"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.665334665334665"
                     /psig="0.946053946053946"
                     /xcortree=2048
                     /SigmaFactorBS="cattttcggcaagcttgcaggtactctgcaaagcaaaaaagc
                     ggatatcataaatataAATCTGTATAGTGAATGATAcgtattgatgagcttggtcatg
                     a"
                     /listShort="S191, ydfQ"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             559786..560124
                     /gene="ydfQ"
                     /locus_tag="BSU_05510"
                     /old_locus_tag="BSU05510"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 15937154; Product type
                     e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative thioredoxin or thiol-disulfide
                     isomerase"
                     /protein_id="NP_388432.1"
                     /db_xref="EnsemblGenomes-Gn:BSU05510"
                     /db_xref="EnsemblGenomes-Tr:CAB12358"
                     /db_xref="GOA:P96695"
                     /db_xref="InterPro:IPR013766"
                     /db_xref="InterPro:IPR036249"
                     /db_xref="SubtiList:BG12164"
                     /db_xref="UniProtKB/Swiss-Prot:P96695"
                     /translation="MKEMTGLHSLVSIENFIKQHKFSFIYISRPGCTVCHAVLPQLRI
                     VLDQFPNIKLGHINADDVAEVAGRFSVFTVPVLLLFIDGTEFLREARFVHFEQLEQKL
                     KRVYRLYEGE*"
                     /label="ydfQ CDS"
     gene            559786..560124
                     /gene="ydfQ"
                     /locus_tag="BSU_05510"
                     /old_locus_tag="BSU05510"
                     /label="ydfQ gene"
     downshifts      560112
                     /Source="Nicolas_upshifts"
                     /id="D263"
                     /incds=0
                     /nref=9
                     /ntot=28
                     /MaxReadThrough="1.76745"
                     /MaxDrop="4.78737"
                     /score="17.861178"
                     /energy="-6"
                     /TU="NA"
                     /idTUdmin="U428"
                     /TUdmin=0
                     /isTUend="TRUE"
                     /label="downshifts"
     CDS             complement(560164..560400)
                     /gene="ydzH"
                     /locus_tag="BSU_05520"
                     /old_locus_tag="BSU05520"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved hypothetical protein,
                     sporulation-related"
                     /protein_id="NP_388433.1"
                     /db_xref="EnsemblGenomes-Gn:BSU05520"
                     /db_xref="EnsemblGenomes-Tr:CAB12359"
                     /db_xref="InterPro:IPR019618"
                     /db_xref="SubtiList:BG12810"
                     /db_xref="UniProtKB/Swiss-Prot:O31496"
                     /translation="MRSQINISNLTINGMTQNANTDIGQNLQNSHTANSKNYGVNFTL
                     GDYSPSHSIIISASCDNDTSDQGQVDNPSSPSEE*"
                     /label="ydzH CDS"
     gene            complement(560164..560400)
                     /gene="ydzH"
                     /locus_tag="BSU_05520"
                     /old_locus_tag="BSU05520"
                     /label="ydzH gene"
     downshifts      complement(560188)
                     /Source="Nicolas_upshifts"
                     /id="D264"
                     /incds=0
                     /nref=1
                     /ntot=10
                     /MaxReadThrough="3.87679"
                     /MaxDrop="2.5881"
                     /score="9.38580075"
                     /energy="-6"
                     /TU="NA"
                     /idTUdmin="U430"
                     /TUdmin=418
                     /isTUend="FALSE"
                     /label="downshifts"
     promotor_-35    560212..560218
                     /Source="Nicolas_upshift_promotors"
                     /id="U429"
                     /multdbtbs="-"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp="0.722277722277722"
                     /psig="0.722277722277722"
                     /xcortree=1208
                     /SigmaFactorBS="aagggttatcaacctgcccttgatcactTGTATCAttatcac
                     aacttgcTGAAATAATAATtgaatgagaaggagagtaatctcctaatgtgaaattcac
                     t"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    560233..560244
                     /Source="Nicolas_upshift_promotors"
                     /id="U429"
                     /multdbtbs="-"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp="0.722277722277722"
                     /psig="0.722277722277722"
                     /xcortree=1208
                     /SigmaFactorBS="aagggttatcaacctgcccttgatcactTGTATCAttatcac
                     aacttgcTGAAATAATAATtgaatgagaaggagagtaatctcctaatgtgaaattcac
                     t"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        560244
                     /Source="Nicolas_upshifts"
                     /id="U429"
                     /multdbtbs="-"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp="0.722277722277722"
                     /psig="0.722277722277722"
                     /xcortree=1208
                     /SigmaFactorBS="aagggttatcaacctgcccttgatcactTGTATCAttatcac
                     aacttgcTGAAATAATAATtgaatgagaaggagagtaatctcctaatgtgaaattcac
                     t"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     S_feature       complement(560401..560562)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_599344_599505_c"
                     /HighExp="BT, B36, S8, S7, G135, S5, S6, G180, Pyr,
                     LBGstat"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="NA"
                     /TUshortPSig="NA"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S192"
     S_feature       complement(560566..560931)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_599509_599874_c"
                     /HighExp="BT, B36, S8, S7, S6, G/S, S5, Pyr, B60, S4"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigK, SigGF, SigK"
                     /TUshortPSig="0.994, 0.989, 0.997"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S193"
     downshifts      complement(560606)
                     /Source="Nicolas_upshifts"
                     /id="D265"
                     /incds=0
                     /nref=26
                     /ntot=52
                     /MaxReadThrough="2.64253"
                     /MaxDrop="4.6761"
                     /score="8.29803249"
                     /energy="-12.4"
                     /TU="NA"
                     /idTUdmin="U430"
                     /TUdmin=0
                     /isTUend="TRUE"
                     /label="downshifts"
     CDS             complement(560932..561162)
                     /gene="ydzR"
                     /locus_tag="BSU_05529"
                     /old_locus_tag="BSU05529"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms; PubMedId: 19383706, 20709900"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved hypothetical protein,
                     sporulation-related"
                     /protein_id="YP_003097687.1"
                     /db_xref="EnsemblGenomes-Gn:BSU05529"
                     /db_xref="EnsemblGenomes-Tr:CAX52560"
                     /db_xref="InterPro:IPR019618"
                     /db_xref="UniProtKB/Swiss-Prot:C0H3W2"
                     /translation="MMKFPVYIHSISGNSVFNNGFAVSISPFSVSKTTEGSGGSNTGL
                     VFESNALSQTSSANQAQNVTYAIQELLSKLLA*"
                     /label="ydzR CDS"
     gene            complement(560932..561162)
                     /gene="ydzR"
                     /locus_tag="BSU_05529"
                     /old_locus_tag="BSU05529"
                     /label="ydzR gene"
     downshifts      561146
                     /Source="Nicolas_upshifts"
                     /id="D266"
                     /incds=0
                     /nref=1
                     /ntot=4
                     /MaxReadThrough="1.08051"
                     /MaxDrop="3.36374"
                     /score="17.861178"
                     /energy="-6"
                     /TU="NA"
                     /idTUdmin="U428"
                     /TUdmin=1034
                     /isTUend="FALSE"
                     /label="downshifts"
     promotor_-10    complement(561183..561202)
                     /Source="Nicolas_upshift_promotors"
                     /id="U430"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp="0.994005994005994"
                     /psig="0.994005994005994"
                     /xcortree=1432
                     /SigmaFactorBS="ggtttttgtctcttactgaaagtttttgccgttttGTTTAAG
                     CAActgctgctcacacACCATATTGTATAAACAGTCataacagagaggagagatgaat
                     g"
                     /listShort="ydzR, S193"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(561200)
                     /Source="Nicolas_upshifts"
                     /id="U430"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp="0.994005994005994"
                     /psig="0.994005994005994"
                     /xcortree=1432
                     /SigmaFactorBS="ggtttttgtctcttactgaaagtttttgccgttttGTTTAAG
                     CAActgctgctcacacACCATATTGTATAAACAGTCataacagagaggagagatgaat
                     g"
                     /listShort="ydzR, S193"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     S_feature       complement(561202..561285)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_600145_600228_c"
                     /HighExp="S8, S5, S7, S6, S4, nit, ferm, BT, Pyr, G/S"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigGF, SigK"
                     /TUshortPSig="0.989, 0.997"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S194"
     promotor_-35    complement(561216..561225)
                     /Source="Nicolas_upshift_promotors"
                     /id="U430"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp="0.994005994005994"
                     /psig="0.994005994005994"
                     /xcortree=1432
                     /SigmaFactorBS="ggtttttgtctcttactgaaagtttttgccgttttGTTTAAG
                     CAActgctgctcacacACCATATTGTATAAACAGTCataacagagaggagagatgaat
                     g"
                     /listShort="ydzR, S193"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             complement(561286..561963)
                     /gene="ydfR"
                     /locus_tag="BSU_05530"
                     /old_locus_tag="BSU05530"
                     /function="16.8: Protect"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved membrane protein of unknown function"
                     /protein_id="NP_388434.1"
                     /db_xref="EnsemblGenomes-Gn:BSU05530"
                     /db_xref="EnsemblGenomes-Tr:CAB12360"
                     /db_xref="GOA:P96696"
                     /db_xref="InterPro:IPR007353"
                     /db_xref="InterPro:IPR023090"
                     /db_xref="SubtiList:BG12165"
                     /db_xref="UniProtKB/Swiss-Prot:P96696"
                     /translation="MNRLPFGYIKLRLAGRKANPMTNLIHHWSGGSMNFTWESLVLIV
                     AGVILLRISGRKSIAQMTSTQTVVMISIGTIIVQPIIEYSLFKTLIAAAIFTSTLIVM
                     EWIQMKSNTIEKMLTGKAKIVIENGQLHIENLKKMRLTADQLEMQLRLHGVTAIQDVK
                     IATLEANGQLGIELTDDAKPLTVRDLKKLIHPDFINKDGQAQSGNQNIFDEVGKKNKK
                     NVPKKLH*"
                     /label="ydfR CDS"
     gene            complement(561286..561963)
                     /gene="ydfR"
                     /locus_tag="BSU_05530"
                     /old_locus_tag="BSU05530"
                     /label="ydfR gene"
     promotor_-10    complement(561934..561945)
                     /Source="Nicolas_upshift_promotors"
                     /id="U431"
                     /multdbtbs="SigG"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp="0.98901098901099"
                     /psig="0.98901098901099"
                     /xcortree=782
                     /SigmaFactorBS="taatatatccatctataccaaaaatattgttcggttcaggac
                     AGAATGAaccgactgcctttcGGATATATTAAAttgcgattggccggaagaaaagcca
                     a"
                     /listShort="ydfR, S194, ydzR, S193"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(561948)
                     /Source="Nicolas_upshifts"
                     /id="U431"
                     /multdbtbs="SigG"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp="0.98901098901099"
                     /psig="0.98901098901099"
                     /xcortree=782
                     /SigmaFactorBS="taatatatccatctataccaaaaatattgttcggttcaggac
                     AGAATGAaccgactgcctttcGGATATATTAAAttgcgattggccggaagaaaagcca
                     a"
                     /listShort="ydfR, S194, ydzR, S193"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(561960..561966)
                     /Source="Nicolas_upshift_promotors"
                     /id="U431"
                     /multdbtbs="SigG"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp="0.98901098901099"
                     /psig="0.98901098901099"
                     /xcortree=782
                     /SigmaFactorBS="taatatatccatctataccaaaaatattgttcggttcaggac
                     AGAATGAaccgactgcctttcGGATATATTAAAttgcgattggccggaagaaaagcca
                     a"
                     /listShort="ydfR, S194, ydzR, S193"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     S_feature       complement(561964..562797)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_600907_601740_c"
                     /HighExp="S6, S8, S7, S5, BT, B36, G/S, Pyr, nit, B60"
                     /AntisenseName="ydfS"
                     /AntisenseCor="0.65823831974361602"
                     /AntisenseRegPval="-34.1"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigK"
                     /TUshortPSig="0.997"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S195"
     promotor_-35    561979..561984
                     /Source="Nicolas_upshift_promotors"
                     /id="U432"
                     /multdbtbs="SigG"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp="0.944055944055944"
                     /psig="0.944055944055944"
                     /xcortree=781
                     /SigmaFactorBS="ccgaaaggcagtcggttcattctgtcctgaaccgaACAATAt
                     ttttggtatagatGGATATATTAAGccaaacaatgatagcaacaggagttttttggcc
                     g"
                     /listShort="ydfS"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    561999..562010
                     /Source="Nicolas_upshift_promotors"
                     /id="U432"
                     /multdbtbs="SigG"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp="0.944055944055944"
                     /psig="0.944055944055944"
                     /xcortree=781
                     /SigmaFactorBS="ccgaaaggcagtcggttcattctgtcctgaaccgaACAATAt
                     ttttggtatagatGGATATATTAAGccaaacaatgatagcaacaggagttttttggcc
                     g"
                     /listShort="ydfS"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        562004
                     /Source="Nicolas_upshifts"
                     /id="U432"
                     /multdbtbs="SigG"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp="0.944055944055944"
                     /psig="0.944055944055944"
                     /xcortree=781
                     /SigmaFactorBS="ccgaaaggcagtcggttcattctgtcctgaaccgaACAATAt
                     ttttggtatagatGGATATATTAAGccaaacaatgatagcaacaggagttttttggcc
                     g"
                     /listShort="ydfS"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             562076..562783
                     /gene="ydfS"
                     /locus_tag="BSU_05540"
                     /old_locus_tag="BSU05540"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved hypothetical protein"
                     /protein_id="NP_388435.1"
                     /db_xref="EnsemblGenomes-Gn:BSU05540"
                     /db_xref="EnsemblGenomes-Tr:CAB12361"
                     /db_xref="GOA:P96697"
                     /db_xref="InterPro:IPR007353"
                     /db_xref="InterPro:IPR023090"
                     /db_xref="SubtiList:BG12166"
                     /db_xref="UniProtKB/Swiss-Prot:P96697"
                     /translation="MIELEVVIRTVASFGLLLIAERILGKQTISQMTIFDFIAAITLG
                     AIAAGLAYNTSIKPHNMAISFSIFVLTIFLISFLSIKNRKLRKFFAGDPTVLIQNGKI
                     LESNMRKMRYTLDYLNQQLREKEIFNIEEVLFAILETNGQLTVLRKPQFRHVTKQDLM
                     IAVNQEQRLPIELIMDGEIIENNLKQNRLTESWLLEELRKRDIKVKETVYAVLLGNGD
                     IYVDQYKDHISVPMDKE*"
                     /label="ydfS CDS"
     gene            562076..562783
                     /gene="ydfS"
                     /locus_tag="BSU_05540"
                     /old_locus_tag="BSU05540"
                     /label="ydfS gene"
     CDS             complement(562798..563229)
                     /gene="cotP"
                     /locus_tag="BSU_05550"
                     /old_locus_tag="BSU05550"
                     /function="16.8: Protect"
                     /experiment="publication(s) with functional evidences,
                     PMID:11150673"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 11150673; Product type s:
                     structure"
                     /codon_start=1
                     /transl_table=11
                     /product="spore coat protein"
                     /protein_id="NP_388436.1"
                     /db_xref="EnsemblGenomes-Gn:BSU05550"
                     /db_xref="EnsemblGenomes-Tr:CAB12362"
                     /db_xref="GOA:P96698"
                     /db_xref="InterPro:IPR002068"
                     /db_xref="InterPro:IPR008978"
                     /db_xref="InterPro:IPR031107"
                     /db_xref="SubtiList:BG12167"
                     /db_xref="UniProtKB/Swiss-Prot:P96698"
                     /translation="MDFEKIRKWLEITNEYKQSDFWTNVLKYKAPEHFFDSEASTFVY
                     DFYQDEEYNFIIVEMPGVYEEELTIRLLSKTQLLIKGTITPVFPAEMEVLRERYYGEI
                     ERIIQLPEAAETHLLQIQLLNGLLHISYPRQVETVAFNKGL*"
                     /label="cotP CDS"
     gene            complement(562798..563229)
                     /gene="cotP"
                     /locus_tag="BSU_05550"
                     /old_locus_tag="BSU05550"
                     /label="cotP gene"
     CDS             complement(563242..563484)
                     /gene="ydgA"
                     /locus_tag="BSU_05560"
                     /old_locus_tag="BSU05560"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved hypothetical protein; putative
                     germination protein"
                     /protein_id="NP_388437.1"
                     /db_xref="EnsemblGenomes-Gn:BSU05560"
                     /db_xref="EnsemblGenomes-Tr:CAB12363"
                     /db_xref="InterPro:IPR019618"
                     /db_xref="SubtiList:BG12168"
                     /db_xref="UniProtKB/Swiss-Prot:P96699"
                     /translation="MPYQINIANIKINGVTQNGNIDVGPTVHNSHTANSKYFGANFSL
                     GDLSPTSSLLNTGNIDSDVSDQDQIGNPSAPISNQI*"
                     /label="ydgA CDS"
     gene            complement(563242..563484)
                     /gene="ydgA"
                     /locus_tag="BSU_05560"
                     /old_locus_tag="BSU05560"
                     /label="ydgA gene"
     CDS             complement(563498..563770)
                     /gene="ydgB"
                     /locus_tag="BSU_05570"
                     /old_locus_tag="BSU05570"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved hypothetical protein; putative
                     germination protein"
                     /protein_id="NP_388438.1"
                     /db_xref="EnsemblGenomes-Gn:BSU05570"
                     /db_xref="EnsemblGenomes-Tr:CAB12364"
                     /db_xref="InterPro:IPR019618"
                     /db_xref="SubtiList:BG12169"
                     /db_xref="UniProtKB/Swiss-Prot:P96700"
                     /translation="MPSTVINLYYLKINSISGNGSITIGEAAYNSPTNNQKSQGTNSS
                     FGDTSPTESVMENFLNDPDVNDQTSIGNSDTSNVNAPPIAPPPILD*"
                     /label="ydgB CDS"
     gene            complement(563498..563770)
                     /gene="ydgB"
                     /locus_tag="BSU_05570"
                     /old_locus_tag="BSU05570"
                     /label="ydgB gene"
     promotor_-10    complement(563792..563811)
                     /Source="Nicolas_upshift_promotors"
                     /id="U433"
                     /multdbtbs="SigK"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp="0.997002997002997"
                     /psig="0.997002997002997"
                     /xcortree=1305
                     /SigmaFactorBS="gatagagttttgcccgtaaatgCAAGGAACAAttgggtgcag
                     cggCGCATAATGTACTGTACAGAaagatggaagggtgtgatgggatgccgtctacagt
                     a"
                     /listShort="ydgB, ydgA, cotP, S195, ydfR, S194, ydzR,
                     S193"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(563796)
                     /Source="Nicolas_upshifts"
                     /id="U433"
                     /multdbtbs="SigK"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp="0.997002997002997"
                     /psig="0.997002997002997"
                     /xcortree=1305
                     /SigmaFactorBS="gatagagttttgcccgtaaatgCAAGGAACAAttgggtgcag
                     cggCGCATAATGTACTGTACAGAaagatggaagggtgtgatgggatgccgtctacagt
                     a"
                     /listShort="ydgB, ydgA, cotP, S195, ydfR, S194, ydzR,
                     S193"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(563825..563834)
                     /Source="Nicolas_upshift_promotors"
                     /id="U433"
                     /multdbtbs="SigK"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp="0.997002997002997"
                     /psig="0.997002997002997"
                     /xcortree=1305
                     /SigmaFactorBS="gatagagttttgcccgtaaatgCAAGGAACAAttgggtgcag
                     cggCGCATAATGTACTGTACAGAaagatggaagggtgtgatgggatgccgtctacagt
                     a"
                     /listShort="ydgB, ydgA, cotP, S195, ydfR, S194, ydzR,
                     S193"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-35    563989..563996
                     /Source="Nicolas_upshift_promotors"
                     /id="U434"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.786213786213786"
                     /psig="0.997002997002997"
                     /xcortree=1917
                     /SigmaFactorBS="gaagctggcaaacaggatcagtttgaaatAATTGACAatgaa
                     gctaatgccaTGAAATAATACTCGTGAGTAacattactcgtgggtattatttttgggg
                     t"
                     /listShort="ydgC, ydgD, S196, ydgE, S197"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    564012..564031
                     /Source="Nicolas_upshift_promotors"
                     /id="U434"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.786213786213786"
                     /psig="0.997002997002997"
                     /xcortree=1917
                     /SigmaFactorBS="gaagctggcaaacaggatcagtttgaaatAATTGACAatgaa
                     gctaatgccaTGAAATAATACTCGTGAGTAacattactcgtgggtattatttttgggg
                     t"
                     /listShort="ydgC, ydgD, S196, ydgE, S197"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        564020
                     /Source="Nicolas_upshifts"
                     /id="U434"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.786213786213786"
                     /psig="0.997002997002997"
                     /xcortree=1917
                     /SigmaFactorBS="gaagctggcaaacaggatcagtttgaaatAATTGACAatgaa
                     gctaatgccaTGAAATAATACTCGTGAGTAacattactcgtgggtattatttttgggg
                     t"
                     /listShort="ydgC, ydgD, S196, ydgE, S197"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             564069..564656
                     /gene="ydgC"
                     /locus_tag="BSU_05580"
                     /old_locus_tag="BSU05580"
                     /function="16.3: Control"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; Product type r: regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="putative transcriptional regulator"
                     /protein_id="NP_388439.1"
                     /db_xref="EnsemblGenomes-Gn:BSU05580"
                     /db_xref="EnsemblGenomes-Tr:CAB12365"
                     /db_xref="GOA:P96701"
                     /db_xref="InterPro:IPR001647"
                     /db_xref="InterPro:IPR009057"
                     /db_xref="InterPro:IPR036271"
                     /db_xref="SubtiList:BG12170"
                     /db_xref="UniProtKB/Swiss-Prot:P96701"
                     /translation="MKSKGVESRKRLLKAAANEFSVRGFHDAKVSEIVKKAGFTQPSF
                     YLYFQSKEAIFAELITDFHSRVRKLTESLLLENGLNTEDVSKRVLLAVETVFQFLDED
                     KDLTKIGFFLNPEAKQMKKDLAMVLKENLEAEQRLGYFHSELDMETVAECLVGMIEHL
                     TESFLLTGIKDPASLAAEVVNLLIYGMLPKGNDVR*"
                     /label="ydgC CDS"
     gene            564069..564656
                     /gene="ydgC"
                     /locus_tag="BSU_05580"
                     /old_locus_tag="BSU05580"
                     /label="ydgC gene"
     CDS             564653..564997
                     /gene="ydgD"
                     /locus_tag="BSU_05590"
                     /old_locus_tag="BSU05590"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved hypothetical protein"
                     /protein_id="NP_388440.1"
                     /db_xref="EnsemblGenomes-Gn:BSU05590"
                     /db_xref="EnsemblGenomes-Tr:CAB12366"
                     /db_xref="GOA:P96702"
                     /db_xref="InterPro:IPR032808"
                     /db_xref="SubtiList:BG12171"
                     /db_xref="UniProtKB/Swiss-Prot:P96702"
                     /translation="MISIMMKVSLAVFMLAGGIIKVSRVPFQVEHWRHYQYPLWFLTV
                     TGILEIAGALAMTAGIWNRYAAIGAGVLFVVLMAGAIHAHMFRARQSVIMAIQAMICL
                     IVSIMIIMGSYT*"
                     /label="ydgD CDS"
     gene            564653..564997
                     /gene="ydgD"
                     /locus_tag="BSU_05590"
                     /old_locus_tag="BSU05590"
                     /label="ydgD gene"
     S_feature       564998..565159
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_603941_604102"
                     /HighExp="Salt, Diami, dia15, dia5, aero, H2O2, SMMPr,
                     Etha, Lbtran, LBGstat"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.997"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S196"
     CDS             565160..565633
                     /gene="ydgE"
                     /locus_tag="BSU_05600"
                     /old_locus_tag="BSU05600"
                     /EC_number="2.3.1.-"
                     /function="16.11: Scavenge (Catabolism)"
                     /function="16.8: Protect"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative N-acetyltransferase"
                     /protein_id="NP_388441.1"
                     /db_xref="EnsemblGenomes-Gn:BSU05600"
                     /db_xref="EnsemblGenomes-Tr:CAB12367"
                     /db_xref="GOA:P96703"
                     /db_xref="InterPro:IPR000182"
                     /db_xref="InterPro:IPR016181"
                     /db_xref="SubtiList:BG12172"
                     /db_xref="UniProtKB/Swiss-Prot:P96703"
                     /translation="MAFTLEDMTEEEFEAFRGMSVQNFAKQNITSGTWTEKEAFEKSE
                     QAYENMIPNGRDSSNHYFWNITNDQGERMGWLWLYADPLHPQKEAFIYSFGLYEAFRG
                     KGLAQLALQTLDERARELGAERLALHVFAHNETAVYLYQKMGYAMTNIRMRKQLC*"
                     /label="ydgE CDS"
     gene            565160..565633
                     /gene="ydgE"
                     /locus_tag="BSU_05600"
                     /old_locus_tag="BSU05600"
                     /label="ydgE gene"
     S_feature       565634..566326
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_604577_605269"
                     /HighExp="Salt, H2O2, dia15, aero, T-2.40H, Diami,
                     T-3.40H, T-1.40H, T-4.40H, T-0.40H"
                     /AntisenseName="vmlR"
                     /AntisenseCor="-7.1224465259194999E-2"
                     /AntisenseRegPval="-0.6"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.997"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S197"
     downshifts      complement(565776)
                     /Source="Nicolas_upshifts"
                     /id="D267"
                     /incds=0
                     /nref=4
                     /ntot=88
                     /MaxReadThrough="0.39199"
                     /MaxDrop="3.39645"
                     /score="18.2783449"
                     /energy="-8.8"
                     /TU="NA"
                     /idTUdmin="U436"
                     /TUdmin=0
                     /isTUend="TRUE"
                     /label="downshifts"
     CDS             complement(565793..567436)
                     /gene="vmlR"
                     /locus_tag="BSU_05610"
                     /old_locus_tag="BSU05610"
                     /function="16.1: Circulate"
                     /function="16.8: Protect"
                     /experiment="publication(s) with functional evidences,
                     PMID:16109936, 22226636, 24687494, 25891423"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 16109936, 22226636,
                     24687494, 25891423; Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette efflux transporter"
                     /protein_id="NP_388442.1"
                     /db_xref="EnsemblGenomes-Gn:BSU05610"
                     /db_xref="EnsemblGenomes-Tr:CAB12368"
                     /db_xref="GOA:P39115"
                     /db_xref="InterPro:IPR003439"
                     /db_xref="InterPro:IPR003593"
                     /db_xref="InterPro:IPR027417"
                     /db_xref="InterPro:IPR032781"
                     /db_xref="SubtiList:BG10767"
                     /db_xref="UniProtKB/Swiss-Prot:P39115"
                     /translation="MKEIVTLTNVSYEVKDQTVFKHVNASVQQGDIIGIIGKNGAGKS
                     TLLHLIHNDLAPAQGQILRKDIKLALVEQETAAYSFADQTPAEKKLLEKWHVPLRDFH
                     QLSGGEKLKARLAKGLSEDADLLLLDEPTNHLDEKSLQFLIQQLKHYNGTVILVSHDR
                     YFLDEAATKIWSLEDQTLIEFKGNYSGYMKFREKKRLTQQREYEKQQKMVERIEAQMN
                     GLASWSEKAHAQSTKKEGFKEYHRVKAKRTDAQIKSKQKRLEKELEKAKAEPVTPEYT
                     VRFSIDTTHKTGKRFLEVQNVTKAFGERTLFKNANFTIQHGEKVAIIGPNGSGKTTLL
                     NIILGQETAEGSVWVSPSANIGYLTQEVFDLPLEQTPEELFENETFKARGHVQNLMRH
                     LGFTAAQWTEPIKHMSMGERVKIKLMAYILEEKDVLILDEPTNHLDLPSREQLEETLS
                     QYSGTLLAVSHDRYFLEKTTNSKLVISNNGIEKQLNDVPSERNEREELRLKLETERQE
                     VLGKLSFMTPNDKGYKELDQAFNELTKRIKELDHQDKKD*"
                     /label="vmlR CDS"
     gene            complement(565793..567436)
                     /gene="vmlR"
                     /locus_tag="BSU_05610"
                     /old_locus_tag="BSU05610"
                     /label="vmlR gene"
     S_feature       complement(567471..567668)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_606414_606611_c"
                     /HighExp="BC, Sw, B60, B36, LoTm, S7, HiOs, S4, BI,
                     M9-stat"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig=1
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S198"
     promotor_-35    567485..567487
                     /Source="Nicolas_upshift_promotors"
                     /id="U435"
                     /multdbtbs="-"
                     /comp="M13"
                     /sig="Sig-"
                     /pcomp="0.433566433566434"
                     /psig="0.494505494505494"
                     /xcortree=34
                     /SigmaFactorBS="gctttaaagggagaataaaaaaatcctcccaaatgtgTTGga
                     aggattagccgtgcCTGTGCATGATCAAATAAGctattttttataaatagcagtgtcg
                     t"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    567504..567522
                     /Source="Nicolas_upshift_promotors"
                     /id="U435"
                     /multdbtbs="-"
                     /comp="M13"
                     /sig="Sig-"
                     /pcomp="0.433566433566434"
                     /psig="0.494505494505494"
                     /xcortree=34
                     /SigmaFactorBS="gctttaaagggagaataaaaaaatcctcccaaatgtgTTGga
                     aggattagccgtgcCTGTGCATGATCAAATAAGctattttttataaatagcagtgtcg
                     t"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        567508
                     /Source="Nicolas_upshifts"
                     /id="U435"
                     /multdbtbs="-"
                     /comp="M13"
                     /sig="Sig-"
                     /pcomp="0.433566433566434"
                     /psig="0.494505494505494"
                     /xcortree=34
                     /SigmaFactorBS="gctttaaagggagaataaaaaaatcctcccaaatgtgTTGga
                     aggattagccgtgcCTGTGCATGATCAAATAAGctattttttataaatagcagtgtcg
                     t"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     downshifts      complement(567514)
                     /Source="Nicolas_upshifts"
                     /id="D268"
                     /incds=0
                     /nref=210
                     /ntot=265
                     /MaxReadThrough="3.59768"
                     /MaxDrop="6.27457"
                     /score="29.5863709"
                     /energy="-11.8"
                     /TU="U436"
                     /idTUdmin="U437"
                     /TUdmin=242
                     /isTUend="FALSE"
                     /label="downshifts"
     downshifts      567634
                     /Source="Nicolas_upshifts"
                     /id="D269"
                     /incds=0
                     /nref=35
                     /ntot=150
                     /MaxReadThrough="1.71902"
                     /MaxDrop="4.95368"
                     /score="-7.23582918"
                     /energy="-13.3"
                     /TU="NA"
                     /idTUdmin="U435"
                     /TUdmin="-2"
                     /isTUend="TRUE"
                     /label="downshifts"
     promotor_-10    complement(567660..567679)
                     /Source="Nicolas_upshift_promotors"
                     /id="U436"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.717282717282717"
                     /psig=1
                     /xcortree=414
                     /SigmaFactorBS="atgagagcaggagtttttttgatgaaaatgaccTTTGCTTTt
                     gaatttaaaggTATGCTATAGTGTTTGTAATcaaaacaagaagggatgatgggtggac
                     a"
                     /listShort="S198, vmlR"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(567672)
                     /Source="Nicolas_upshifts"
                     /id="U436"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.717282717282717"
                     /psig=1
                     /xcortree=414
                     /SigmaFactorBS="atgagagcaggagtttttttgatgaaaatgaccTTTGCTTTt
                     gaatttaaaggTATGCTATAGTGTTTGTAATcaaaacaagaagggatgatgggtggac
                     a"
                     /listShort="S198, vmlR"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(567692..567699)
                     /Source="Nicolas_upshift_promotors"
                     /id="U436"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.717282717282717"
                     /psig=1
                     /xcortree=414
                     /SigmaFactorBS="atgagagcaggagtttttttgatgaaaatgaccTTTGCTTTt
                     gaatttaaaggTATGCTATAGTGTTTGTAATcaaaacaagaagggatgatgggtggac
                     a"
                     /listShort="S198, vmlR"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     downshifts      complement(567755)
                     /Source="Nicolas_upshifts"
                     /id="D270"
                     /incds=0
                     /nref=92
                     /ntot=203
                     /MaxReadThrough="2.22553"
                     /MaxDrop="5.71399"
                     /score="18.9878298"
                     /energy="-13.3"
                     /TU="NA"
                     /idTUdmin="U437"
                     /TUdmin=1
                     /isTUend="TRUE"
                     /label="downshifts"
     CDS             complement(567756..569132)
                     /gene="ydgF"
                     /locus_tag="BSU_05620"
                     /old_locus_tag="BSU05620"
                     /function="16.1: Circulate"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 15849754, 16109936,
                     16850406; Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="putative amino acid permease"
                     /protein_id="NP_388443.1"
                     /db_xref="EnsemblGenomes-Gn:BSU05620"
                     /db_xref="EnsemblGenomes-Tr:CAB12369"
                     /db_xref="GOA:P96704"
                     /db_xref="InterPro:IPR002293"
                     /db_xref="InterPro:IPR004840"
                     /db_xref="InterPro:IPR004841"
                     /db_xref="SubtiList:BG12173"
                     /db_xref="UniProtKB/Swiss-Prot:P96704"
                     /translation="MTDDMTKDNINQQTLQRGLKNRHIQLIAIGGAIGTGLFLGSGKS
                     IHFAGPSILFAYMITGIICFLIMRSLGELLLSNLNYHSFVDFVQDYLGDMAAFITGWT
                     YWFCWISIAMADLTAVGLYTQYWLPGVPQWVPGLIALIILLIMNLATVKLFGELEFWF
                     ALIKVIAILALIVIGLVMIFKGFSTSSGVSSFTNLWSHGGLFPNGMHGFILSFQMVVF
                     AFVGIELVGLTAGETENPEKVIPKAINNIPVRVLLFYIGALLVIMSIYPWDIINPSES
                     PFVQVFVAVGIVGAASIINFVVLTSAASACNSAVFSTSRMVYSLAKDHNAPESMAKLT
                     QRKVPRNALFFSAIVILIGVTLNYIMPEGVFTLITSISTVCFIYIWGITVICHMKYRK
                     TRPELAKTNKFKLPLYPFTNYLILAFLAFVLVVLALAQDTRVSLFVTPVWFILLIVIY
                     KVRKAKHQ*"
                     /label="ydgF CDS"
     gene            complement(567756..569132)
                     /gene="ydgF"
                     /locus_tag="BSU_05620"
                     /old_locus_tag="BSU05620"
                     /label="ydgF gene"
     misc_feature    complement(569182..569201)
                     /Source="Nicolas_upshift_promotors"
                     /id="U437"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.897102897102897"
                     /psig=1
                     /xcortree=1890
                     /SigmaFactorBS="aatcacattaaaattcttttcatcaatccttttttagtaaaa
                     aagatagaaattttAGTGTTATAATAATCATTAAaaatagattgctgactcaataaac
                     a"
                     /listShort="ydgF"
                     /GFF_Attribute="listLong"
                     /label="promotor_single_box"
                     /note="Geneious type: promotor_single_box"
     upshifts        complement(569197)
                     /Source="Nicolas_upshifts"
                     /id="U437"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.897102897102897"
                     /psig=1
                     /xcortree=1890
                     /SigmaFactorBS="aatcacattaaaattcttttcatcaatccttttttagtaaaa
                     aagatagaaattttAGTGTTATAATAATCATTAAaaatagattgctgactcaataaac
                     a"
                     /listShort="ydgF"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     Polymorphism    join(569271,569273)
                     /Source="geneious"
                     /ID="SNP_BsDelta6_608215_608214"
                     /Polymorphism_Type="Insertion (tandem repeat)"
                     /note="SNP between marked nucleotides"
                     /strain="Bacillus subtilis Delta6"
                     /Length=0
                     /Amino_Acid_Change
                     /CDS_Position
                     /Change="(A)5 -> (A)6"
                     /Codon_Change
                     /Coverage=41
                     /locus_tag
                     /Protein_Effect
                     /Reference_Frequency
                     /Reference_Nucleotides
                     /Variant_Nucleotides="A"
                     /Variant_P_Value="8.2e-115"
                     /Variant_Raw_Frequency=39
                     /comment="dinB_terminator_improvement"
                     /modified_by="User"
                     /
                     /label="Polymorphism_Delta6"
     terminator      569272..569305
                     /created_by="User"
                     /comment="dinB_terminator_improvement"
                     /modified_by="User"
                     /label="Delta6_dinB_Terminator"
     CDS             complement(569304..569822)
                     /gene="dinB"
                     /locus_tag="BSU_05630"
                     /old_locus_tag="BSU05630"
                     /function="16.8: Protect"
                     /function="16.6: Maintain"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 2b: Function from indirect experimental
                     evidences (e.g. phenotypes); PubMedId: 1847907, 3110138,
                     12644484, 16267290, 22059487; Product type r: regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="nuclease inhibitor"
                     /protein_id="NP_388444.1"
                     /db_xref="EnsemblGenomes-Gn:BSU05630"
                     /db_xref="EnsemblGenomes-Tr:CAB12370"
                     /db_xref="GOA:Q02886"
                     /db_xref="InterPro:IPR007837"
                     /db_xref="InterPro:IPR034660"
                     /db_xref="SubtiList:BG10539"
                     /db_xref="UniProtKB/Swiss-Prot:Q02886"
                     /translation="MSDFAFKLYEYNVWANQQIFNRLKELPKEIYHQEIQSVFPSISH
                     VLSHVYLSDLGWIEVFSGKTLSDALALAEQLKEQTEAKEIEEMEDLFLRLSERYILFL
                     QQKEQLNKPLQIQNPSSGIMKTTVSELLPHVVNHGTYHRGNITAMLRQAGYASAPTDY
                     GLYLFMTKTEKA*"
                     /label="dinB CDS"
     gene            complement(569304..569822)
                     /gene="dinB"
                     /locus_tag="BSU_05630"
                     /old_locus_tag="BSU05630"
                     /label="dinB gene"
     downshifts      complement(569318)
                     /Source="Nicolas_upshifts"
                     /id="D271"
                     /incds=0
                     /nref=35
                     /ntot=176
                     /MaxReadThrough="2.77148"
                     /MaxDrop="6.32316"
                     /score="16.2748201"
                     /energy="-15"
                     /TU="NA"
                     /idTUdmin="U438"
                     /TUdmin=0
                     /isTUend="TRUE"
                     /label="downshifts"
     promotor_-10    complement(569848..569867)
                     /Source="Nicolas_upshift_promotors"
                     /id="U438"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.839160839160839"
                     /psig=1
                     /xcortree=1506
                     /SigmaFactorBS="tcctctaaactatatatgtcaacaaattttattttcgagcaC
                     TCTacataagaactcatgTTCGTGTATAATGAAAGCTAtacacacgaaagggggaatt
                     t"
                     /listShort="dinB"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(569867)
                     /Source="Nicolas_upshifts"
                     /id="U438"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.839160839160839"
                     /psig=1
                     /xcortree=1506
                     /SigmaFactorBS="tcctctaaactatatatgtcaacaaattttattttcgagcaC
                     TCTacataagaactcatgTTCGTGTATAATGAAAGCTAtacacacgaaagggggaatt
                     t"
                     /listShort="dinB"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(569883..569886)
                     /Source="Nicolas_upshift_promotors"
                     /id="U438"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.839160839160839"
                     /psig=1
                     /xcortree=1506
                     /SigmaFactorBS="tcctctaaactatatatgtcaacaaattttattttcgagcaC
                     TCTacataagaactcatgTTCGTGTATAATGAAAGCTAtacacacgaaagggggaatt
                     t"
                     /listShort="dinB"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-35    569904..569911
                     /Source="Nicolas_upshift_promotors"
                     /id="U439"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.528471528471528"
                     /psig="0.97002997002997"
                     /xcortree=2440
                     /SigmaFactorBS="gagtgctcgaaaataaaattTGTTGACAtatatagtttagag
                     GAATAAACTAATTGACATTGaacataaagtttagcggggtaaactataatgaggaggg
                     g"
                     /listShort="ydgG, ydgH"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    569926..569945
                     /Source="Nicolas_upshift_promotors"
                     /id="U439"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.528471528471528"
                     /psig="0.97002997002997"
                     /xcortree=2440
                     /SigmaFactorBS="gagtgctcgaaaataaaattTGTTGACAtatatagtttagag
                     GAATAAACTAATTGACATTGaacataaagtttagcggggtaaactataatgaggaggg
                     g"
                     /listShort="ydgG, ydgH"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        569944
                     /Source="Nicolas_upshifts"
                     /id="U439"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.528471528471528"
                     /psig="0.97002997002997"
                     /xcortree=2440
                     /SigmaFactorBS="gagtgctcgaaaataaaattTGTTGACAtatatagtttagag
                     GAATAAACTAATTGACATTGaacataaagtttagcggggtaaactataatgaggaggg
                     g"
                     /listShort="ydgG, ydgH"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             complement(569956..570357)
                     /gene="ydhUc"
                     /locus_tag="PG10_BSU_05890_3'_ext"
                     /locus_tag="BSU_05890"
                     /function="16.8: Protect"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 5: Unknown function; Product type e :
                     enzyme"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="Mn catalase fragment; C-terminal part of YhdU"
                     /db_xref="SubtiList:BG12198"
                     /modified_by="User"
                     /translation="FFQSSNFRGKQKQYRDLLRGIFLEEIAHVELVQNTINALLDESG
                     GEGVGSQGTDQAPLDEAVKHANPHHYIIGAQSSLPVDAGGNPWNGSWVYNHGNLITDL
                     LDNLLLESTGVLQKTRIYEMSSNQTHYSLPR*"
                     /label="PG10_BSU_05890_3'_ext"
     CDS             complement(569956..570084)
                     /locus_tag="PG10_rand_002"
                     /created_by="User"
                     /transl_table=11
                     /pseudo
                     /translation="MYNHGNLITDLLDNLLLESTGVLQKTRIYEMSSNQTHYSLPR*"
                     /label="PG10_rand_002"
     gene            complement(569956..570357)
                     /gene="ydhUc"
                     /locus_tag="PG10_BSU_05890_3'_ext"
                     /old_locus_tag="BSU_05890"
                     /pseudo
                     /modified_by="User"
                     /label="PG10_BSU_05890_3'_ext"
     gene            complement(569956..570084)
                     /locus_tag="PG10_rand_002"
                     /created_by="User"
                     /label="PG10_rand_002"
     CDS             569974..570066
                     /locus_tag="PG10_rand_001"
                     /created_by="User"
                     /transl_table=11
                     /pseudo
                     /translation="MRLIRAHFINSCFLQHTCRLKKQVIQQVSN*"
                     /label="PG10_rand_001"
     gene            569974..570066
                     /locus_tag="PG10_rand_001"
                     /created_by="User"
                     /modified_by="User"
                     /label="PG10_rand_001"
     SCAR            569976..569977
                     /note="deletion occured in betwen marked nucleotides"
                     /created_by="User"
                     /label="IIG_Bs22"
     CDS             complement(570288..570482)
                     /gene="ydhUn"
                     /locus_tag="BSU_05899"
                     /old_locus_tag="BSU05899"
                     /function="16.8: Protect"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 5: Unknown function; Product type e :
                     enzyme"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="Mn catalase fragment; N-terminal part of YhdU"
                     /translation="MYYYKEELINIIKPDKPDPAAAKVLQEILGGHYGEMRTMMQFFS
                     KALISEESRNSTAICFAAFF*"
                     /label="ydhUn CDS"
     gene            complement(570288..570482)
                     /gene="ydhUn"
                     /locus_tag="BSU_05899"
                     /old_locus_tag="BSU05899"
                     /pseudo
                     /label="ydhUn gene"
     promotor_-10    complement(570515..570526)
                     /Source="Nicolas_upshift_promotors"
                     /id="U456"
                     /multdbtbs="-"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp="0.994005994005994"
                     /psig="0.994005994005994"
                     /xcortree=907
                     /SigmaFactorBS="ttattttcttctttcacgccttcccatgcttatcatgTATAT
                     ATtttatctcatcttACAAATAATATAagaaaatctcttaagaagaaatgaggcgtgt
                     t"
                     /listShort="ydhU, ydhU"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(570523)
                     /Source="Nicolas_upshifts"
                     /id="U456"
                     /multdbtbs="-"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp="0.994005994005994"
                     /psig="0.994005994005994"
                     /xcortree=907
                     /SigmaFactorBS="ttattttcttctttcacgccttcccatgcttatcatgTATAT
                     ATtttatctcatcttACAAATAATATAagaaaatctcttaagaagaaatgaggcgtgt
                     t"
                     /listShort="ydhU, ydhU"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(570540..570546)
                     /Source="Nicolas_upshift_promotors"
                     /id="U456"
                     /multdbtbs="-"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp="0.994005994005994"
                     /psig="0.994005994005994"
                     /xcortree=907
                     /SigmaFactorBS="ttattttcttctttcacgccttcccatgcttatcatgTATAT
                     ATtttatctcatcttACAAATAATATAagaaaatctcttaagaagaaatgaggcgtgt
                     t"
                     /listShort="ydhU, ydhU"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-35    570601..570608
                     /Source="Nicolas_upshift_promotors"
                     /id="U457"
                     /multdbtbs="-"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp="0.998001998001998"
                     /psig=1
                     /xcortree=2625
                     /SigmaFactorBS="cgtgaaagaagaaaataaaaaaatacaggaaaagtGTTGACC
                     AaataaaacaggcaTGGTATATTATTAAACGTCGctgatgaacagcgtgaaacaaaac
                     a"
                     /listShort="S204, trnE-Arg, trnE-Gly, rrnE-16S"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    570622..570641
                     /Source="Nicolas_upshift_promotors"
                     /id="U457"
                     /multdbtbs="-"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp="0.998001998001998"
                     /psig=1
                     /xcortree=2625
                     /SigmaFactorBS="cgtgaaagaagaaaataaaaaaatacaggaaaagtGTTGACC
                     AaataaaacaggcaTGGTATATTATTAAACGTCGctgatgaacagcgtgaaacaaaac
                     a"
                     /listShort="S204, trnE-Arg, trnE-Gly, rrnE-16S"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     promotor_no_box 570624..570724
                     /Source="Nicolas_upshift_promotors"
                     /id="U458"
                     /multdbtbs="-"
                     /comp="M21"
                     /sig="Sig-"
                     /pcomp="0.604395604395604"
                     /psig="0.0919080919080919"
                     /xcortree=1636
                     /SigmaFactorBS="gtatattattaaacgtcgctgatgaacagcgtgaaacaaaac
                     agaaaaacaaaaaagttttcctaaggtgtttacaagattttaaaaatgtgtataataa
                     g"
                     /listShort="S204, trnE-Arg, trnE-Gly, rrnE-16S"
                     /GFF_Attribute="listLong"
                     /label="promotor_no_box"
     upshifts        570626
                     /Source="Nicolas_upshifts"
                     /id="U457"
                     /multdbtbs="-"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp="0.998001998001998"
                     /psig=1
                     /xcortree=2625
                     /SigmaFactorBS="cgtgaaagaagaaaataaaaaaatacaggaaaagtGTTGACC
                     AaataaaacaggcaTGGTATATTATTAAACGTCGctgatgaacagcgtgaaacaaaac
                     a"
                     /listShort="S204, trnE-Arg, trnE-Gly, rrnE-16S"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     downshifts      complement(570672)
                     /Source="Nicolas_upshifts"
                     /id="D286"
                     /incds=0
                     /nref=1
                     /ntot=54
                     /MaxReadThrough="2.24619"
                     /MaxDrop="4.20389"
                     /score="11.9939391"
                     /energy="-9"
                     /TU="NA"
                     /idTUdmin="U456"
                     /TUdmin="-990"
                     /isTUend="FALSE"
                     /label="downshifts"
     upshifts        570684
                     /Source="Nicolas_upshifts"
                     /id="U458"
                     /multdbtbs="-"
                     /comp="M21"
                     /sig="Sig-"
                     /pcomp="0.604395604395604"
                     /psig="0.0919080919080919"
                     /xcortree=1636
                     /SigmaFactorBS="gtatattattaaacgtcgctgatgaacagcgtgaaacaaaac
                     agaaaaacaaaaaagttttcctaaggtgtttacaagattttaaaaatgtgtataataa
                     g"
                     /listShort="S204, trnE-Arg, trnE-Gly, rrnE-16S"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    570692..570699
                     /Source="Nicolas_upshift_promotors"
                     /id="U459"
                     /multdbtbs="-"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp="0.418581418581419"
                     /psig="0.96003996003996"
                     /xcortree=1634
                     /SigmaFactorBS="aaaaacaaaaaagttttcctaaggTGTTTACAagattttaaa
                     aatGTGTATAATAAGAAAAGTCGaattgaaaaagattcgaaaaaacattaaaaaactt
                     c"
                     /listShort="S204, trnE-Arg, trnE-Gly, rrnE-16S"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    570713..570732
                     /Source="Nicolas_upshift_promotors"
                     /id="U459"
                     /multdbtbs="-"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp="0.418581418581419"
                     /psig="0.96003996003996"
                     /xcortree=1634
                     /SigmaFactorBS="aaaaacaaaaaagttttcctaaggTGTTTACAagattttaaa
                     aatGTGTATAATAAGAAAAGTCGaattgaaaaagattcgaaaaaacattaaaaaactt
                     c"
                     /listShort="S204, trnE-Arg, trnE-Gly, rrnE-16S"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     S_feature       570728..570815
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_635022_635109"
                     /HighExp="LBGstat, C30, Cold, Heat, Oxctl, T-1.10H,
                     T-0.40H, T-1.40H, UNK1, BMM"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA, Sig-, SigA"
                     /TUshortPSig="0.96, 0.0919, 1"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S204"
     upshifts        570728
                     /Source="Nicolas_upshifts"
                     /id="U459"
                     /multdbtbs="-"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp="0.418581418581419"
                     /psig="0.96003996003996"
                     /xcortree=1634
                     /SigmaFactorBS="aaaaacaaaaaagttttcctaaggTGTTTACAagattttaaa
                     aatGTGTATAATAAGAAAAGTCGaattgaaaaagattcgaaaaaacattaaaaaactt
                     c"
                     /listShort="S204, trnE-Arg, trnE-Gly, rrnE-16S"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     tRNA            570816..570892
                     /gene="trnE-Arg"
                     /locus_tag="BSU_tRNA_79"
                     /product="tRNA-Arg"
                     /inference="profile:tRNAscan:1.23"
                     /note="Evidence 2a: Function from experimental evidences
                     in other organisms; Product type n: RNA"
                     /function="16.2: Construct biomass (Anabolism)"
                     /label="trnE-Arg tRNA"
     gene            570816..570892
                     /gene="trnE-Arg"
                     /locus_tag="BSU_tRNA_79"
                     /label="trnE-Arg gene"
     tRNA            570906..570979
                     /gene="trnE-Gly"
                     /locus_tag="BSU_tRNA_80"
                     /product="tRNA-Gly"
                     /inference="profile:tRNAscan:1.23"
                     /note="transfer RNA-Gly(UCC); Evidence 2a: Function from
                     experimental evidences in other organisms; Product type n:
                     RNA"
                     /function="16.2: Construct biomass (Anabolism)"
                     /label="trnE-Gly tRNA"
     gene            570906..570979
                     /gene="trnE-Gly"
                     /locus_tag="BSU_tRNA_80"
                     /label="trnE-Gly gene"
     rRNA            571139..572693
                     /gene="rrnE-16S"
                     /locus_tag="BSU_rRNA_30"
                     /product="ribosomal RNA-16S"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; Product type n: RNA"
                     /function="16.2: Construct biomass (Anabolism)"
                     /label="rrnE-16S rRNA"
     gene            571139..572693
                     /gene="rrnE-16S"
                     /locus_tag="BSU_rRNA_30"
                     /label="rrnE-16S gene"
     rRNA            572861..575788
                     /gene="rrnE-23S"
                     /locus_tag="BSU_rRNA_12"
                     /product="ribosomal RNA-23S"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; Product type n: RNA"
                     /function="16.2: Construct biomass (Anabolism)"
                     /label="rrnE-23S rRNA"
     gene            572861..575788
                     /gene="rrnE-23S"
                     /locus_tag="BSU_rRNA_12"
                     /label="rrnE-23S gene"
     rRNA            575844..575960
                     /gene="rrnE-5S"
                     /locus_tag="BSU_rRNA_13"
                     /product="ribosomal RNA-5S"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; Product type n: RNA"
                     /function="16.2: Construct biomass (Anabolism)"
                     /label="rrnE-5S rRNA"
     gene            575844..575960
                     /gene="rrnE-5S"
                     /locus_tag="BSU_rRNA_13"
                     /label="rrnE-5S gene"
     tRNA            575974..576050
                     /gene="trnE-Met"
                     /locus_tag="BSU_tRNA_21"
                     /product="tRNA-Met"
                     /inference="profile:tRNAscan:1.23"
                     /note="transfer RNA-Met(CAU); Evidence 1a: Function from
                     experimental evidences in the studied strain; Product type
                     n: RNA"
                     /function="16.2: Construct biomass (Anabolism)"
                     /label="trnE-Met tRNA"
     gene            575974..576050
                     /gene="trnE-Met"
                     /locus_tag="BSU_tRNA_21"
                     /label="trnE-Met gene"
     tRNA            576111..576187
                     /gene="trnE-Asp"
                     /locus_tag="BSU_tRNA_22"
                     /product="tRNA-Asp"
                     /inference="profile:tRNAscan:1.23"
                     /note="transfer RNA-Asp(GUC); Evidence 2a: Function from
                     experimental evidences in other organisms; Product type n:
                     RNA"
                     /function="16.2: Construct biomass (Anabolism)"
                     /label="trnE-Asp tRNA"
     gene            576111..576187
                     /gene="trnE-Asp"
                     /locus_tag="BSU_tRNA_22"
                     /label="trnE-Asp gene"
     downshifts      576184
                     /Source="Nicolas_upshifts"
                     /id="D287"
                     /incds=0
                     /nref=38
                     /ntot=211
                     /MaxReadThrough="6.00554"
                     /MaxDrop="5.14761"
                     /score="7.63230089"
                     /energy="-5.4"
                     /TU="NA"
                     /idTUdmin="U460"
                     /TUdmin="-3784"
                     /isTUend="FALSE"
                     /label="downshifts"
     promotor_-35    576288..576292
                     /Source="Nicolas_upshift_promotors"
                     /id="U460"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.942057942057942"
                     /psig=1
                     /xcortree=2461
                     /SigmaFactorBS="tggtgtcatagccaagctttctttatatcgggaacaTCTTGg
                     atattccagcaaaaTTCGATAAACTAGGAAGAGCacaaataggcataagcagggttga
                     a"
                     /listShort="thiL, ydiB, ydiC, rimI, gcp"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    576308..576327
                     /Source="Nicolas_upshift_promotors"
                     /id="U460"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.942057942057942"
                     /psig=1
                     /xcortree=2461
                     /SigmaFactorBS="tggtgtcatagccaagctttctttatatcgggaacaTCTTGg
                     atattccagcaaaaTTCGATAAACTAGGAAGAGCacaaataggcataagcagggttga
                     a"
                     /listShort="thiL, ydiB, ydiC, rimI, gcp"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        576312
                     /Source="Nicolas_upshifts"
                     /id="U460"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.942057942057942"
                     /psig=1
                     /xcortree=2461
                     /SigmaFactorBS="tggtgtcatagccaagctttctttatatcgggaacaTCTTGg
                     atattccagcaaaaTTCGATAAACTAGGAAGAGCacaaataggcataagcagggttga
                     a"
                     /listShort="thiL, ydiB, ydiC, rimI, gcp"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             576368..577345
                     /gene="thiL"
                     /locus_tag="BSU_05900"
                     /old_locus_tag="BSU05900"
                     /EC_number="2.7.4.16"
                     /function="16.2: Construct biomass (Anabolism)"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 2a: Function from experimental evidences
                     in other organisms; PubMedId: 16291685, 26443755; Product
                     type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine-monophosphate kinase"
                     /protein_id="NP_388471.1"
                     /db_xref="EnsemblGenomes-Gn:BSU05900"
                     /db_xref="EnsemblGenomes-Tr:CAB12409"
                     /db_xref="GOA:O05514"
                     /db_xref="InterPro:IPR006283"
                     /db_xref="InterPro:IPR010918"
                     /db_xref="InterPro:IPR016188"
                     /db_xref="InterPro:IPR036676"
                     /db_xref="InterPro:IPR036921"
                     /db_xref="SubtiList:BG10693"
                     /db_xref="UniProtKB/Swiss-Prot:O05514"
                     /translation="MDEFDLIHSITPRTIHHSSVDVGIGDDAALYTAKHGVQEIVCVD
                     TMVEDVHFKLHYSSPEDIGYKALAVNISDIAAMGGIPKFYLVSLAVPSKWTESEIKAM
                     YEGMNELAKLYHMDLIGGDTVSTADKLVVTVTVIGEIEKGQACLRSLAKPNDIVFVTG
                     EIGSSAAGLSLLLEETNPQNSSVETDYFIHRHKRPEPRVSVGRLCSIFKRAALNDVSD
                     GLASELNEIAEASCVSIEIVESMLPIHSDLPKLHPNWKEWALFGGEDFELTGTVSNEE
                     WEVLKQECAALHLPITKIGYVREKTKSKVILKTDQTSMILEKKGYNHFK*"
                     /label="thiL CDS"
     gene            576368..577345
                     /gene="thiL"
                     /locus_tag="BSU_05900"
                     /old_locus_tag="BSU05900"
                     /label="thiL gene"
     CDS             577360..577836
                     /gene="tsaE"
                     /locus_tag="BSU_05910"
                     /old_locus_tag="BSU05910"
                     /function="16.2: Construct biomass (Anabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:12682299, 17005971, 19246765, 19376873, 19578062,
                     20701780, 20824107, 21183954, 21285948, 22378793,
                     23072323"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 12682299, 17005971,
                     19246765, 19376873, 19578062, 20701780, 20824107,
                     21183954, 21285948, 22378793, 23072323; Product type e :
                     enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA(NNU) t(6)A37 threonylcarbamoyladenosine
                     modification; ADP binding protein"
                     /protein_id="NP_388472.1"
                     /db_xref="EnsemblGenomes-Gn:BSU05910"
                     /db_xref="EnsemblGenomes-Tr:CAB12410"
                     /db_xref="GOA:O05515"
                     /db_xref="InterPro:IPR003442"
                     /db_xref="InterPro:IPR027417"
                     /db_xref="SubtiList:BG12199"
                     /db_xref="UniProtKB/Swiss-Prot:O05515"
                     /translation="MKQLKWRTVNPEETKAIAKLTAAFAKPGDVLTLEGDLGAGKTTF
                     TKGFAEGLGITRIVNSPTFTIIKEYNDGVLPLYHMDVYRMEDESEDLGLDEYFHGQGV
                     CLVEWAHLIEEQLPQERLQIVIKRAGDDEREITFTAVGNRYEMLCEELSRHDNISN*"
                     /label="tsaE CDS"
     gene            577360..577836
                     /gene="tsaE"
                     /locus_tag="BSU_05910"
                     /old_locus_tag="BSU05910"
                     /label="tsaE gene"
     CDS             577817..578506
                     /gene="tsaB"
                     /locus_tag="BSU_05920"
                     /old_locus_tag="BSU05920"
                     /function="16.2: Construct biomass (Anabolism)"
                     /function="16.8: Protect"
                     /experiment="publication(s) with functional evidences,
                     PMID:12682299, 17005971, 20944216, 19376873, 19578062,
                     20701780, 20824107, 21183954, 21285948, 22378793,
                     23072323"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 12682299, 17005971,
                     20944216, 19376873, 19578062, 20701780, 20824107,
                     21183954, 21285948, 22378793, 23072323; Product type e :
                     enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA(NNU) t(6)A37 threonylcarbamoyladenosine
                     modification; protease involved in TsaD function"
                     /protein_id="NP_388473.1"
                     /db_xref="EnsemblGenomes-Gn:BSU05920"
                     /db_xref="EnsemblGenomes-Tr:CAB12411"
                     /db_xref="GOA:O05516"
                     /db_xref="InterPro:IPR000905"
                     /db_xref="InterPro:IPR022496"
                     /db_xref="SubtiList:BG12200"
                     /db_xref="UniProtKB/Swiss-Prot:O05516"
                     /translation="MTILAIDTSNYTLGIALLREDTVIAEYITYLKKNHSVRAMPAVH
                     SLLNDCDMAPQDLSKIVVAKGPGSYTGVRIGVTLAKTLAWSLDIPISAVSSLETLAAN
                     GRHFDGLISPIFDARRGQVYTGLYQYKNGLLEQVVPDQNVMLADWLEMLKEKDRPVLF
                     LGHDTSLHKQMIEDVLGTKGFIGTAAQHNPRPSELAFLGKEKEAADVHGLVPDYLRLA
                     EAEAKWIESQK*"
                     /label="tsaB CDS"
     gene            577817..578506
                     /gene="tsaB"
                     /locus_tag="BSU_05920"
                     /old_locus_tag="BSU05920"
                     /label="tsaB gene"
     CDS             578516..578971
                     /gene="rimI"
                     /locus_tag="BSU_05930"
                     /old_locus_tag="BSU05930"
                     /EC_number="2.3.1.267"
                     /function="16.6: Maintain"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 2a: Function from experimental evidences
                     in other organisms; PubMedId: 2828880; Product type e :
                     enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosomal protein S18 alanine
                     N-acetyltransferase"
                     /protein_id="NP_388474.1"
                     /db_xref="EnsemblGenomes-Gn:BSU05930"
                     /db_xref="EnsemblGenomes-Tr:CAB12412"
                     /db_xref="GOA:O05517"
                     /db_xref="InterPro:IPR000182"
                     /db_xref="InterPro:IPR006464"
                     /db_xref="InterPro:IPR016181"
                     /db_xref="SubtiList:BG12201"
                     /db_xref="UniProtKB/Swiss-Prot:O05517"
                     /translation="MKTKAAVRNMRLEDIDHVYEIEASSFTSPWTKDSFYHELLENPY
                     AHYLVIEKDGHLAGYCGIWIVMDDAQITNIAIKPEYRGQSLGETLFRSAVELCKEKDA
                     RRLSLEVRVSNHPAQGLYKKFGMQPGGIRKNYYTDNGEDALIMWVTINE*"
                     /label="rimI CDS"
     gene            578516..578971
                     /gene="rimI"
                     /locus_tag="BSU_05930"
                     /old_locus_tag="BSU05930"
                     /label="rimI gene"
     CDS             578964..580004
                     /gene="tsaD"
                     /locus_tag="BSU_05940"
                     /old_locus_tag="BSU05940"
                     /function="16.2: Construct biomass (Anabolism)"
                     /function="16.6: Maintain"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 2a: Function from experimental evidences
                     in other organisms; PubMedId: 11073929, 12682299, 9743119,
                     20824107, 21625506, 21873492, 19376873, 19578062,
                     20701780, 20824107, 21183954, 21285948, 22378793; Product
                     type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA(NNU) t(6)A37 threonylcarbamoyladenosine
                     modification; glycation binding protein"
                     /protein_id="NP_388475.1"
                     /db_xref="EnsemblGenomes-Gn:BSU05940"
                     /db_xref="EnsemblGenomes-Tr:CAB12413"
                     /db_xref="GOA:O05518"
                     /db_xref="InterPro:IPR000905"
                     /db_xref="InterPro:IPR017860"
                     /db_xref="InterPro:IPR017861"
                     /db_xref="InterPro:IPR022450"
                     /db_xref="SubtiList:BG12202"
                     /db_xref="UniProtKB/Swiss-Prot:O05518"
                     /translation="MSEQKDMYVLGIETSCDETAAAIVKNGKEIISNVVASQIESHKR
                     FGGVVPEIASRHHVEQITLVIEEAFRKAGMTYSDIDAIAVTEGPGLVGALLIGVNAAK
                     ALSFAYNIPLVGVHHIAGHIYANRLVEDIVFPALALVVSGGHTELVYMKEHGSFEVIG
                     ETLDDAAGEAYDKVARTMGLPYPGGPQIDKLAEKGNDNIPLPRAWLEEGSYNFSFSGL
                     KSAVINTLHNASQKGQEIAPEDLSASFQNSVIDVLVTKTARAAKEYDVKQVLLAGGVA
                     ANRGLRAALEKEFAQHEGITLVIPPLALCTDNAAMIAAAGTIAFEKGIRGAYDMNGQP
                     GLELTSYQSLTR*"
                     /label="tsaD CDS"
     gene            578964..580004
                     /gene="tsaD"
                     /locus_tag="BSU_05940"
                     /old_locus_tag="BSU05940"
                     /label="tsaD gene"
     downshifts      579968
                     /Source="Nicolas_upshifts"
                     /id="D288"
                     /incds=0
                     /nref=39
                     /ntot=222
                     /MaxReadThrough="3.15518"
                     /MaxDrop="4.65228"
                     /score="3.97936019"
                     /energy="-10.1"
                     /TU="NA"
                     /idTUdmin="U460"
                     /TUdmin=0
                     /isTUend="TRUE"
                     /label="downshifts"
     CDS             complement(580234..582162)
                     /gene="ydiF"
                     /locus_tag="BSU_05950"
                     /old_locus_tag="BSU05950"
                     /function="16.8: Protect"
                     /function="16.1: Circulate"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 11916677, 16109936,
                     24389466; Product type r: regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="putative energy-sensing inhibitor of
                     translation"
                     /protein_id="NP_388476.2"
                     /db_xref="EnsemblGenomes-Gn:BSU05950"
                     /db_xref="EnsemblGenomes-Tr:CAB12414"
                     /db_xref="GOA:O05519"
                     /db_xref="InterPro:IPR003439"
                     /db_xref="InterPro:IPR003593"
                     /db_xref="InterPro:IPR017871"
                     /db_xref="InterPro:IPR027417"
                     /db_xref="InterPro:IPR032524"
                     /db_xref="InterPro:IPR032781"
                     /db_xref="SubtiList:BG12203"
                     /db_xref="UniProtKB/Swiss-Prot:O05519"
                     /translation="MMILQVNQLSKSFGADTILNNIKLEVRNRDRIAIVGRNGAGKST
                     LLKIIAGQLSYEKGEIIKPKDITMGYLAQHTGLDSKLTIKEELLTVFDHLKAMEKEMR
                     AMEEKMAAADPGELESIMKTYDRLQQEFKDKGGYQYEADVRSVLHGLGFSHFDDSTQV
                     QSLSGGQKTRLALGKLLLTQPDLLILDEPTNHLDIDTLTWLEHYLQGYSGAILIVSHD
                     RYFLDKVVNQVYEVSRAESKKYHGNYSAYLDQKAAQYEKDLKMYEKQQDEIAKLQDFV
                     DRNLARASTTKRAQSRRKQLERMDVMSKPLGDEKSANFHFDITKQSGNEVLRVQDLTI
                     SYENQPPLLTEVSFMLTRGESAALVGPNGIGKSTLLKTLIDTLKPDQGTISYGSNVSV
                     GYYDQEQAELTSSKRVLDELWDEYPGLPEKEIRTCLGNFLFSGDDVLKPVHSLSGGEK
                     ARLALAKLMLQKANFLILDEPTNHLDLDSKEVLENALIDYPGTLLFVSHDRYFINRIA
                     TRVLELSSSHIEEYLGDYDYYTEKKTEQLELEKMNQQEETDKTPATVKSDSKRSYEEE
                     KEWKKKERQRLRRIEEIETTVQTIEENISRNDELLCDPEVYQDHEKVQAIHADNEKLN
                     QELESLLSEWEELSTEED*"
                     /label="ydiF CDS"
     gene            complement(580234..582162)
                     /gene="ydiF"
                     /locus_tag="BSU_05950"
                     /old_locus_tag="BSU05950"
                     /label="ydiF gene"
     downshifts      complement(580251)
                     /Source="Nicolas_upshifts"
                     /id="D289"
                     /incds=0
                     /nref=170
                     /ntot=266
                     /MaxReadThrough="1.32926"
                     /MaxDrop="5.81869"
                     /score="16.702581"
                     /energy="-12.6"
                     /TU="NA"
                     /idTUdmin="U463"
                     /TUdmin="-9"
                     /isTUend="TRUE"
                     /label="downshifts"
     misc_feature    581914..581933
                     /Source="Nicolas_upshift_promotors"
                     /id="U461"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.821178821178821"
                     /psig="0.98901098901099"
                     /xcortree=2080
                     /SigmaFactorBS="tccttttccattgcttttaagtggtcaaaaacagtcagcagc
                     tcttctttTATGGTAAGCTTAGAATCCAagccagtatgctgggcgagatatcccattg
                     t"
                     /listShort="S205, S206, moaC, rex, tatAY, tatCY"
                     /GFF_Attribute="listLong"
                     /label="promotor_single_box"
                     /note="Geneious type: promotor_single_box"
     upshifts        581924
                     /Source="Nicolas_upshifts"
                     /id="U461"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.821178821178821"
                     /psig="0.98901098901099"
                     /xcortree=2080
                     /SigmaFactorBS="tccttttccattgcttttaagtggtcaaaaacagtcagcagc
                     tcttctttTATGGTAAGCTTAGAATCCAagccagtatgctgggcgagatatcccattg
                     t"
                     /listShort="S205, S206, moaC, rex, tatAY, tatCY"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     S_feature       581926..582115
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_646220_646409"
                     /HighExp="Diami, H2O2, dia5, Paraq, G135, G180, G150,
                     Cold, dia15, BC"
                     /AntisenseName="ydiF"
                     /AntisenseCor="0.47406689574609401"
                     /AntisenseRegPval="-15.8"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.989"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S205"
     promotor_-35    582080..582087
                     /Source="Nicolas_upshift_promotors"
                     /id="U462"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.93006993006993"
                     /psig="0.997002997002997"
                     /xcortree=2055
                     /SigmaFactorBS="ctacaatggcgatgcgatcacgaTTTCTGACttccagcttta
                     taTTGTTTAAAATAGTATCAGCaccaaatgatttggacagctgattaacttgtaagat
                     c"
                     /listShort="S206, moaC, rex, tatAY, tatCY"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    582101..582120
                     /Source="Nicolas_upshift_promotors"
                     /id="U462"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.93006993006993"
                     /psig="0.997002997002997"
                     /xcortree=2055
                     /SigmaFactorBS="ctacaatggcgatgcgatcacgaTTTCTGACttccagcttta
                     taTTGTTTAAAATAGTATCAGCaccaaatgatttggacagctgattaacttgtaagat
                     c"
                     /listShort="S206, moaC, rex, tatAY, tatCY"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     S_feature       582117..582287
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_646411_646581"
                     /HighExp="Diami, dia5, dia15, H2O2, Etha, G180, G150,
                     Oxctl, Mt0, Paraq"
                     /AntisenseName="ydiF"
                     /AntisenseCor="0.63697451027099605"
                     /AntisenseRegPval="-31.3"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA, SigA"
                     /TUshortPSig="0.997, 0.989"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S206"
     upshifts        582117
                     /Source="Nicolas_upshifts"
                     /id="U462"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.93006993006993"
                     /psig="0.997002997002997"
                     /xcortree=2055
                     /SigmaFactorBS="ctacaatggcgatgcgatcacgaTTTCTGACttccagcttta
                     taTTGTTTAAAATAGTATCAGCaccaaatgatttggacagctgattaacttgtaagat
                     c"
                     /listShort="S206, moaC, rex, tatAY, tatCY"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-10    complement(582182..582201)
                     /Source="Nicolas_upshift_promotors"
                     /id="U463"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.891108891108891"
                     /psig="0.999000999001"
                     /xcortree=2085
                     /SigmaFactorBS="tttcttctctatgtcttatatggccaatgtatTGTTTGCTga
                     cttctggttcaTAAGCTACACTTAACTTATTatagcagaggtgaaataatatgatgat
                     c"
                     /listShort="ydiF"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(582194)
                     /Source="Nicolas_upshifts"
                     /id="U463"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.891108891108891"
                     /psig="0.999000999001"
                     /xcortree=2085
                     /SigmaFactorBS="tttcttctctatgtcttatatggccaatgtatTGTTTGCTga
                     cttctggttcaTAAGCTACACTTAACTTATTatagcagaggtgaaataatatgatgat
                     c"
                     /listShort="ydiF"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(582215..582222)
                     /Source="Nicolas_upshift_promotors"
                     /id="U463"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.891108891108891"
                     /psig="0.999000999001"
                     /xcortree=2085
                     /SigmaFactorBS="tttcttctctatgtcttatatggccaatgtatTGTTTGCTga
                     cttctggttcaTAAGCTACACTTAACTTATTatagcagaggtgaaataatatgatgat
                     c"
                     /listShort="ydiF"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             582288..582800
                     /gene="moaC"
                     /locus_tag="BSU_05960"
                     /old_locus_tag="BSU05960"
                     /EC_number="4.6.1.17"
                     /function="16.2: Construct biomass (Anabolism)"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 2a: Function from experimental evidences
                     in other organisms; PubMedId: 10903949, 16632608,
                     18607082, 20606263, 25941396, 26575208; Product type e :
                     enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="molybdenum cofactor biosynthesis protein C"
                     /protein_id="NP_388477.1"
                     /db_xref="EnsemblGenomes-Gn:BSU05960"
                     /db_xref="EnsemblGenomes-Tr:CAB12415"
                     /db_xref="GOA:O05520"
                     /db_xref="InterPro:IPR002820"
                     /db_xref="InterPro:IPR023045"
                     /db_xref="InterPro:IPR036522"
                     /db_xref="SubtiList:BG12204"
                     /db_xref="UniProtKB/Swiss-Prot:O05520"
                     /translation="MNGFSHFNEQGRAQMVDISEKSSTVRTAAAVSSVHMKNEVYEKI
                     QSHDIGKGDVLAVAQVAGIMAAKQTSNIIPMCHPLSLSGVDISFDWKIKEAEVILHIK
                     AQVKTKGSTGVEMEALTSASVCALTVYDMCKALDKGMVIGPTFLLEKTGGKNGDFKRE
                     LSEYNLEDQK*"
                     /label="moaC CDS"
     gene            582288..582800
                     /gene="moaC"
                     /locus_tag="BSU_05960"
                     /old_locus_tag="BSU05960"
                     /label="moaC gene"
     CDS             582797..583444
                     /gene="rex"
                     /locus_tag="BSU_05970"
                     /old_locus_tag="BSU05970"
                     /function="16.3: Control"
                     /experiment="publication(s) with functional evidences,
                     PMID:15231791, 16207915, 17015645, 17322317, 18485070,
                     21402078, 23046954, 26735940"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 15231791, 16207915,
                     17015645, 17322317, 18485070, 21402078, 23046954,
                     26735940; Product type r: regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="transcription repressor of cydABCD and yjlC-ndh
                     expression"
                     /protein_id="NP_388478.1"
                     /db_xref="EnsemblGenomes-Gn:BSU05970"
                     /db_xref="EnsemblGenomes-Tr:CAB12416"
                     /db_xref="GOA:O05521"
                     /db_xref="InterPro:IPR003781"
                     /db_xref="InterPro:IPR009718"
                     /db_xref="InterPro:IPR022876"
                     /db_xref="InterPro:IPR036291"
                     /db_xref="InterPro:IPR036388"
                     /db_xref="InterPro:IPR036390"
                     /db_xref="PDB:2VT2"
                     /db_xref="PDB:2VT3"
                     /db_xref="SubtiList:BG12205"
                     /db_xref="UniProtKB/Swiss-Prot:O05521"
                     /translation="MNKDQSKIPQATAKRLPLYYRFLKNLHASGKQRVSSAELSDAVK
                     VDSATIRRDFSYFGALGKKGYGYNVDYLLSFFRKTLDQDEMTDVILIGVGNLGTAFLH
                     YNFTKNNNTKISMAFDINESKIGTEVGGVPVYNLDDLEQHVKDESVAILTVPAVAAQS
                     ITDRLVALGIKGILNFTPARLNVPEHIRIHHIDLAVELQSLVYFLKHYSVLEEIE*"
                     /label="rex CDS"
     gene            582797..583444
                     /gene="rex"
                     /locus_tag="BSU_05970"
                     /old_locus_tag="BSU05970"
                     /label="rex gene"
     promotor_no_box 583274..583374
                     /Source="Nicolas_upshift_promotors"
                     /id="U464"
                     /multdbtbs="-"
                     /comp="M2"
                     /sig="Sig-"
                     /pcomp="0.386613386613387"
                     /psig="0.386613386613387"
                     /xcortree=511
                     /SigmaFactorBS="tccattacagacagattggtcgcattaggaatcaagggaatc
                     cttaattttacgccggcccgtttgaatgtgccggaacacattcgaattcatcatatag
                     a"
                     /listShort="tatAY, tatCY"
                     /GFF_Attribute="listLong"
                     /label="promotor_no_box"
     upshifts        583334
                     /Source="Nicolas_upshifts"
                     /id="U464"
                     /multdbtbs="-"
                     /comp="M2"
                     /sig="Sig-"
                     /pcomp="0.386613386613387"
                     /psig="0.386613386613387"
                     /xcortree=511
                     /SigmaFactorBS="tccattacagacagattggtcgcattaggaatcaagggaatc
                     cttaattttacgccggcccgtttgaatgtgccggaacacattcgaattcatcatatag
                     a"
                     /listShort="tatAY, tatCY"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             583466..583639
                     /gene="tatAY"
                     /locus_tag="BSU_05980"
                     /old_locus_tag="BSU05980"
                     /function="16.1: Circulate"
                     /experiment="publication(s) with functional evidences,
                     PMID:15187182, 19049517, 22041895, 22544248, 24652282,
                     26239117, 22720735"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 15187182, 19049517,
                     22041895, 22544248, 24652282, 26239117, 22720735; Product
                     type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="component of the twin-arginine pre-protein
                     translocation pathway"
                     /protein_id="NP_388479.1"
                     /db_xref="EnsemblGenomes-Gn:BSU05980"
                     /db_xref="EnsemblGenomes-Tr:CAB12417"
                     /db_xref="GOA:O05522"
                     /db_xref="InterPro:IPR003369"
                     /db_xref="InterPro:IPR006312"
                     /db_xref="SubtiList:BG12206"
                     /db_xref="UniProtKB/Swiss-Prot:O05522"
                     /translation="MPIGPGSLAVIAIVALIIFGPKKLPELGKAAGDTLREFKNATKG
                     LTSDEEEKKKEDQ*"
                     /label="tatAY CDS"
     gene            583466..583639
                     /gene="tatAY"
                     /locus_tag="BSU_05980"
                     /old_locus_tag="BSU05980"
                     /label="tatAY gene"
     CDS             583646..584410
                     /gene="tatCY"
                     /locus_tag="BSU_05990"
                     /old_locus_tag="BSU05990"
                     /function="16.1: Circulate"
                     /experiment="publication(s) with functional evidences,
                     PMID:11007775, 15187182, 15849754, 16850406, 19049517,
                     22720735"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 11007775, 15187182,
                     15849754, 16850406, 19049517, 22720735; Product type t :
                     transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="component of the twin-arginine pre-protein
                     translocation pathway"
                     /protein_id="NP_388480.1"
                     /db_xref="EnsemblGenomes-Gn:BSU05990"
                     /db_xref="EnsemblGenomes-Tr:CAB12418"
                     /db_xref="GOA:O05523"
                     /db_xref="InterPro:IPR002033"
                     /db_xref="InterPro:IPR019820"
                     /db_xref="SubtiList:BG12207"
                     /db_xref="UniProtKB/Swiss-Prot:O05523"
                     /translation="MTRMKVNQMSLLEHIAELRKRLLIVALAFVVFFIAGFFLAKPII
                     VYLQETDEAKQLTLNAFNLTDPLYVFMQFAFIIGIVLTSPVILYQLWAFVSPGLYEKE
                     RKVTLSYIPVSILLFLAGLSFSYYILFPFVVDFMKRISQDLNVNQVIGINEYFHFLLQ
                     LTIPFGLLFQMPVILMFLTRLGIVTPMFLAKIRKYAYFTLLVIAALITPPELLSHMMV
                     TVPLLILYEISILISKAAYRKAQKSSAADRDVSSGQ*"
                     /label="tatCY CDS"
     gene            583646..584410
                     /gene="tatCY"
                     /locus_tag="BSU_05990"
                     /old_locus_tag="BSU05990"
                     /label="tatCY gene"
     downshifts      584390
                     /Source="Nicolas_upshifts"
                     /id="D290"
                     /incds=0
                     /nref=151
                     /ntot=251
                     /MaxReadThrough="4.01237"
                     /MaxDrop="6.80817"
                     /score="19.4098216"
                     /energy="-12.7"
                     /TU="NA"
                     /idTUdmin="U461"
                     /TUdmin=0
                     /isTUend="TRUE"
                     /label="downshifts"
     CDS             complement(584448..584639)
                     /gene="ydiK"
                     /locus_tag="BSU_06000"
                     /old_locus_tag="BSU06000"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved hypothetical protein"
                     /protein_id="NP_388481.1"
                     /db_xref="EnsemblGenomes-Gn:BSU06000"
                     /db_xref="EnsemblGenomes-Tr:CAB12419"
                     /db_xref="GOA:O05524"
                     /db_xref="InterPro:IPR025426"
                     /db_xref="SubtiList:BG12208"
                     /db_xref="UniProtKB/Swiss-Prot:O05524"
                     /translation="MRNPVVWGMIYFAVGCIFTYLAASSPGSMWSFYSILLMVFAAYN
                     ISISFKMFAFSFKIKKNQK*"
                     /label="ydiK CDS"
     gene            complement(584448..584639)
                     /gene="ydiK"
                     /locus_tag="BSU_06000"
                     /old_locus_tag="BSU06000"
                     /label="ydiK gene"
     downshifts      complement(584465)
                     /Source="Nicolas_upshifts"
                     /id="D291"
                     /incds=0
                     /nref=211
                     /ntot=258
                     /MaxReadThrough="0.81338"
                     /MaxDrop="6.43897"
                     /score="25.5376889"
                     /energy="-12.7"
                     /TU="NA"
                     /idTUdmin="U467"
                     /TUdmin="-21"
                     /isTUend="TRUE"
                     /label="downshifts"
     CDS             complement(584636..585370)
                     /gene="ydiL"
                     /locus_tag="BSU_06010"
                     /old_locus_tag="BSU06010"
                     /EC_number="3.4.-.-"
                     /function="16.6: Maintain"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 15849754, 16850406;
                     Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative membrane protease"
                     /protein_id="NP_388482.1"
                     /db_xref="EnsemblGenomes-Gn:BSU06010"
                     /db_xref="EnsemblGenomes-Tr:CAB12420"
                     /db_xref="GOA:O05525"
                     /db_xref="InterPro:IPR003675"
                     /db_xref="SubtiList:BG12209"
                     /db_xref="UniProtKB/Swiss-Prot:O05525"
                     /translation="MRKQYWFIILTYIIMQFSALIAIPLLFKFGYAGGQPTDENMLHA
                     QGLWSVISFIACLVVVLLILRTVPKETLRNGQKDSIGLSILWAIAGFFIALFSQGIAG
                     SIEYYVFGIGRESENTQAILDVIQAVPLMIIVSSIVGPILEEIIFRKIIFGALYEKTN
                     FFFAGLISSVIFGIVHADLKHLLLYTAMGFTFAFLYARTKRIWVPIFAHLMMNTFVVI
                     MQLEPVRNYLEQQSTQMQLIIGGLFL*"
                     /label="ydiL CDS"
     gene            complement(584636..585370)
                     /gene="ydiL"
                     /locus_tag="BSU_06010"
                     /old_locus_tag="BSU06010"
                     /label="ydiL gene"
     promotor_-35    585028..585033
                     /Source="Nicolas_upshift_promotors"
                     /id="U465"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.952047952047952"
                     /psig="0.952047952047952"
                     /xcortree=1034
                     /SigmaFactorBS="tgcctgaatgacatccagaatcgcttgtgtattttctgATTC
                     TCttccgatgccaaaaACATAATATTCAATAGAGCctgctattccttgagagaaaagg
                     g"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    585048..585066
                     /Source="Nicolas_upshift_promotors"
                     /id="U465"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.952047952047952"
                     /psig="0.952047952047952"
                     /xcortree=1034
                     /SigmaFactorBS="tgcctgaatgacatccagaatcgcttgtgtattttctgATTC
                     TCttccgatgccaaaaACATAATATTCAATAGAGCctgctattccttgagagaaaagg
                     g"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        585050
                     /Source="Nicolas_upshifts"
                     /id="U465"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.952047952047952"
                     /psig="0.952047952047952"
                     /xcortree=1034
                     /SigmaFactorBS="tgcctgaatgacatccagaatcgcttgtgtattttctgATTC
                     TCttccgatgccaaaaACATAATATTCAATAGAGCctgctattccttgagagaaaagg
                     g"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    585369..585370
                     /Source="Nicolas_upshift_promotors"
                     /id="U466"
                     /multdbtbs="-"
                     /comp="M15"
                     /sig="Sig-"
                     /pcomp="0.508491508491508"
                     /psig="0.237762237762238"
                     /xcortree=1461
                     /SigmaFactorBS="aaaataataaaccaatactgttttctcAAatggtatgtACTC
                     CTTTGTTAAGTgggtttcgttcatctacagctattgtaacataatcggtacgggggtg
                     a"
                     /listShort="S207"
                     /listLong="S208, groES, groEL, S209, S210, ydiM, S211,
                     ydzU, ydzV, S212, S213, ydiO, ydiP"
                     /label="promotor_-35"
     promotor_-10    585380..585394
                     /Source="Nicolas_upshift_promotors"
                     /id="U466"
                     /multdbtbs="-"
                     /comp="M15"
                     /sig="Sig-"
                     /pcomp="0.508491508491508"
                     /psig="0.237762237762238"
                     /xcortree=1461
                     /SigmaFactorBS="aaaataataaaccaatactgttttctcAAatggtatgtACTC
                     CTTTGTTAAGTgggtttcgttcatctacagctattgtaacataatcggtacgggggtg
                     a"
                     /listShort="S207"
                     /listLong="S208, groES, groEL, S209, S210, ydiM, S211,
                     ydzU, ydzV, S212, S213, ydiO, ydiP"
                     /label="promotor_-10"
     upshifts        585402
                     /Source="Nicolas_upshifts"
                     /id="U466"
                     /multdbtbs="-"
                     /comp="M15"
                     /sig="Sig-"
                     /pcomp="0.508491508491508"
                     /psig="0.237762237762238"
                     /xcortree=1461
                     /SigmaFactorBS="aaaataataaaccaatactgttttctcAAatggtatgtACTC
                     CTTTGTTAAGTgggtttcgttcatctacagctattgtaacataatcggtacgggggtg
                     a"
                     /listShort="S207"
                     /listLong="S208, groES, groEL, S209, S210, ydiM, S211,
                     ydzU, ydzV, S212, S213, ydiO, ydiP"
                     /label="upshifts"
     promotor_-10    complement(585407..585426)
                     /Source="Nicolas_upshift_promotors"
                     /id="U467"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.671328671328671"
                     /psig=1
                     /xcortree=2332
                     /SigmaFactorBS="tcacgcttacatcattcttttccgctcccttttccgttagct
                     TTTTCAcccccgtaccgatTATGTTACAATAGCTGTAGAtgaacgaaacccacttaac
                     a"
                     /listShort="ydiL, ydiK"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     S_feature       585424..585532
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_649718_649826"
                     /HighExp="S4, S5, H2O2, S3, S8, S6, Diami, Oxctl, G180,
                     dia15"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="Sig-"
                     /TUshortPSig="0.238"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S207"
     upshifts        complement(585427)
                     /Source="Nicolas_upshifts"
                     /id="U467"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.671328671328671"
                     /psig=1
                     /xcortree=2332
                     /SigmaFactorBS="tcacgcttacatcattcttttccgctcccttttccgttagct
                     TTTTCAcccccgtaccgatTATGTTACAATAGCTGTAGAtgaacgaaacccacttaac
                     a"
                     /listShort="ydiL, ydiK"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(585440..585445)
                     /Source="Nicolas_upshift_promotors"
                     /id="U467"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.671328671328671"
                     /psig=1
                     /xcortree=2332
                     /SigmaFactorBS="tcacgcttacatcattcttttccgctcccttttccgttagct
                     TTTTCAcccccgtaccgatTATGTTACAATAGCTGTAGAtgaacgaaacccacttaac
                     a"
                     /listShort="ydiL, ydiK"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-35    585506..585512
                     /Source="Nicolas_upshift_promotors"
                     /id="U468"
                     /multdbtbs="SigA"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.495504495504495"
                     /psig="0.999000999001"
                     /xcortree=2363
                     /SigmaFactorBS="tgatgtaagcgtgaaaaattttttatcttatcACTTGAAatt
                     ggaagggagaTTCTTTATTATAAGAATTGTgttagcactctttagtgctgagtgctaa
                     a"
                     /listShort="S208, groES, groEL, S209, S210, ydiM, S211,
                     ydzU, ydzV, S212, S213, ydiO, ydiP"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    585526..585545
                     /Source="Nicolas_upshift_promotors"
                     /id="U468"
                     /multdbtbs="SigA"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.495504495504495"
                     /psig="0.999000999001"
                     /xcortree=2363
                     /SigmaFactorBS="tgatgtaagcgtgaaaaattttttatcttatcACTTGAAatt
                     ggaagggagaTTCTTTATTATAAGAATTGTgttagcactctttagtgctgagtgctaa
                     a"
                     /listShort="S208, groES, groEL, S209, S210, ydiM, S211,
                     ydzU, ydzV, S212, S213, ydiO, ydiP"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     S_feature       585534..585608
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_649828_649902"
                     /HighExp="HiTm, Etha, dia15, Heat, C90, dia5, LoTm, Lbexp,
                     H2O2, S1"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.999"
                     /TUlongSig="Sig-"
                     /TUlongPSig="0.238"
                     /label="S208"
     upshifts        585534
                     /Source="Nicolas_upshifts"
                     /id="U468"
                     /multdbtbs="SigA"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.495504495504495"
                     /psig="0.999000999001"
                     /xcortree=2363
                     /SigmaFactorBS="tgatgtaagcgtgaaaaattttttatcttatcACTTGAAatt
                     ggaagggagaTTCTTTATTATAAGAATTGTgttagcactctttagtgctgagtgctaa
                     a"
                     /listShort="S208, groES, groEL, S209, S210, ydiM, S211,
                     ydzU, ydzV, S212, S213, ydiO, ydiP"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             585609..585893
                     /gene="groES"
                     /locus_tag="BSU_06020"
                     /old_locus_tag="BSU06020"
                     /function="16.6: Maintain"
                     /function="16.13: Shape"
                     /experiment="publication(s) with functional evidences,
                     PMID:11407116, 17031040, 9303302"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 11407116, 17031040,
                     9303302; Product type f: factor"
                     /codon_start=1
                     /transl_table=11
                     /product="chaperonin small subunit"
                     /protein_id="NP_388483.2"
                     /db_xref="EnsemblGenomes-Gn:BSU06020"
                     /db_xref="EnsemblGenomes-Tr:CAB12421"
                     /db_xref="GOA:P28599"
                     /db_xref="InterPro:IPR011032"
                     /db_xref="InterPro:IPR018369"
                     /db_xref="InterPro:IPR020818"
                     /db_xref="InterPro:IPR037124"
                     /db_xref="SubtiList:BG10422"
                     /db_xref="UniProtKB/Swiss-Prot:P28599"
                     /translation="MLKPLGDRVVIELVESEEKTASGIVLPDSAKEKPQEGKIVAAGS
                     GRVLESGERVALEVKEGDRIIFSKYAGTEVKYEGTEYLILRESDILAVIG*"
                     /label="groES CDS"
     gene            585609..585893
                     /gene="groES"
                     /locus_tag="BSU_06020"
                     /old_locus_tag="BSU06020"
                     /label="groES gene"
     CDS             585940..587574
                     /gene="groEL"
                     /locus_tag="BSU_06030"
                     /old_locus_tag="BSU06030"
                     /function="16.6: Maintain"
                     /function="16.13: Shape"
                     /experiment="publication(s) with functional evidences,
                     PMID:9303302, 11407116, 17031040, 17420574, 22268681"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 9303302, 11407116,
                     17031040, 17420574, 22268681; Product type f: factor"
                     /codon_start=1
                     /transl_table=11
                     /product="chaperonin large subunit"
                     /protein_id="NP_388484.1"
                     /db_xref="EnsemblGenomes-Gn:BSU06030"
                     /db_xref="EnsemblGenomes-Tr:CAB12422"
                     /db_xref="GOA:P28598"
                     /db_xref="InterPro:IPR001844"
                     /db_xref="InterPro:IPR002423"
                     /db_xref="InterPro:IPR018370"
                     /db_xref="InterPro:IPR027409"
                     /db_xref="InterPro:IPR027410"
                     /db_xref="InterPro:IPR027413"
                     /db_xref="SubtiList:BG10423"
                     /db_xref="UniProtKB/Swiss-Prot:P28598"
                     /translation="MAKEIKFSEEARRAMLRGVDALADAVKVTLGPKGRNVVLEKKFG
                     SPLITNDGVTIAKEIELEDAFENMGAKLVAEVASKTNDVAGDGTTTATVLAQAMIREG
                     LKNVTAGANPVGVRKGMEQAVAVAIENLKEISKPIEGKESIAQVAAISAADEEVGSLI
                     AEAMERVGNDGVITIEESKGFTTELEVVEGMQFDRGYASPYMVTDSDKMEAVLDNPYI
                     LITDKKITNIQEILPVLEQVVQQGKPLLLIAEDVEGEALATLVVNKLRGTFNAVAVKA
                     PGFGDRRKAMLEDIAVLTGGEVITEDLGLDLKSTQIAQLGRASKVVVTKENTTIVEGA
                     GETDKISARVTQIRAQVEETTSEFDREKLQERLAKLAGGVAVIKVGAATETELKERKL
                     RIEDALNSTRAAVEEGIVSGGGTALVNVYNKVAAVEAEGDAQTGINIVLRALEEPIRQ
                     IAHNAGLEGSVIVERLKNEEIGVGFNAATGEWVNMIEKGIVDPTKVTRSALQNAASVA
                     AMFLTTEAVVADKPEENGGGAGMPDMGGMGGMGGMM*"
                     /label="groEL CDS"
     gene            585940..587574
                     /gene="groEL"
                     /locus_tag="BSU_06030"
                     /old_locus_tag="BSU06030"
                     /label="groEL gene"
     S_feature       587575..587667
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_651869_651961"
                     /HighExp="HiTm, Etha, dia15, Heat, Diami, dia5, C90, S1,
                     S2, H2O2"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.999"
                     /TUlongSig="Sig-"
                     /TUlongPSig="0.238"
                     /label="S209"
     downshifts      587624
                     /Source="Nicolas_upshifts"
                     /id="D292"
                     /incds=0
                     /nref=228
                     /ntot=267
                     /MaxReadThrough="6.24882"
                     /MaxDrop="5.77437"
                     /score="-6.71161833"
                     /energy="-16.3"
                     /TU="U468"
                     /idTUdmin="U466"
                     /TUdmin=2112
                     /isTUend="FALSE"
                     /label="downshifts"
     CDS             complement(587662..587790)
                     /gene="ydzTc"
                     /locus_tag="BSU_06033"
                     /old_locus_tag="BSU06033"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 5: Unknown function"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein; putative integrase
                     (fragment); C-terminal part of YdzT; defective prophage 3"
                     /translation="EAGVGIKEIQQQFGHSDINTTMDIYAHMTANMEKRSPNSLVN*"
                     /label="ydzTc CDS"
     gene            complement(587662..587790)
                     /gene="ydzTc"
                     /locus_tag="BSU_06033"
                     /old_locus_tag="BSU06033"
                     /pseudo
                     /label="ydzTc gene"
     S_feature       587669..>588895
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_651963_653431"
                     /HighExp="H2O2, Heat, dia15, Diami, S1, G135, G150, S2,
                     G180, dia5"
                     /AntisenseName="ydzT"
                     /AntisenseCor="-2.9485116084752801E-2"
                     /AntisenseRegPval="-0.2"
                     /CDS_PredictionProba="0.23100000000000001"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.999"
                     /TUlongSig="Sig-"
                     /TUlongPSig="0.238"
                     /label="S210"
     CDS             complement(587793..587951)
                     /gene="ydzT"
                     /locus_tag="BSU_06034"
                     /old_locus_tag="BSU06034"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 5: Unknown function"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein; putative integrase
                     (fragment); internal part of YdzT"
                     /db_xref="PSEUDO:CAX52563.1"
                     /translation="MIYQDSSFIFEREDGHPQLRKVIETRLKRLLKKAGIKRMSPPTL
                     LGIPIPPY*"
                     /label="ydzT CDS"
     gene            complement(587793..587951)
                     /gene="ydzT"
                     /locus_tag="BSU_06034"
                     /old_locus_tag="BSU06034"
                     /pseudo
                     /label="ydzT gene"
     CDS             complement(587996..588124)
                     /gene="ydzT"
                     /locus_tag="BSU_06036"
                     /old_locus_tag="BSU06036"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 5: Unknown function"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein; putative integrase
                     (fragment); internal part of YdzT"
                     /db_xref="PSEUDO:CAX52564.1"
                     /translation="MISQVTKTLYTPNNQIEKYQLLTPKTTGSVDIVRIDETMSIY*"
                     /label="ydzT CDS"
     gene            complement(587996..588124)
                     /gene="ydzT"
                     /locus_tag="BSU_06036"
                     /old_locus_tag="BSU06036"
                     /pseudo
                     /label="ydzT gene"
     CDS             complement(588217..588426)
                     /gene="ydzT"
                     /locus_tag="BSU_06037"
                     /old_locus_tag="BSU06037"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 5: Unknown function; Product type e :
                     enzyme"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein; putative integrase
                     (fragment); internal part of YdzT"
                     /db_xref="PSEUDO:CAX52565.1"
                     /translation="MYEDRTLELNEQYSHNCLGGIHACGRMIFRKAKTQGIIKMNPTG
                     DFQLPKKQQSIGKRGADTFSKARSI*"
                     /label="ydzT CDS"
     gene            complement(588217..588426)
                     /gene="ydzT"
                     /locus_tag="BSU_06037"
                     /old_locus_tag="BSU06037"
                     /pseudo
                     /label="ydzT gene"
     CDS             complement(588419..588724)
                     /gene="ydzTn"
                     /locus_tag="BSU_06038"
                     /old_locus_tag="BSU06038"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 5: Unknown function"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein; putative integrase
                     (fragment); N-terminal part of YdzT; defective prophage 3"
                     /db_xref="PSEUDO:CAX52566.1"
                     /translation="MELSYLLGIDPLTKKRLEISKGRFKTKKEAPVAARHVELQNDNG
                     TFIKESDMPFKTFAKGWLKIYNRSGVKISSVRASEKKMMHFIAVLGQYPISKTQKNV*
                     "
                     /label="ydzTn CDS"
     gene            complement(588419..588724)
                     /gene="ydzTn"
                     /locus_tag="BSU_06038"
                     /old_locus_tag="BSU06038"
                     /pseudo
                     /label="ydzTn gene"
     SCAR            join(588895,588902)
                     /created_by="AR/SM"
                     /note="deletion occured in betwen marked nucleotides"
                     /label="Delta6_1"
     N_region        588896..588901
                     /note="KpnI site (GGTACC)"
                     /created_by="User"
                     /label="Delta6_1"
     CDS             complement(589000..591489)
                     /gene="gutR"
                     /locus_tag="BSU_06140"
                     /old_locus_tag="BSU06140"
                     /function="16.3: Control"
                     /experiment="publication(s) with functional evidences,
                     PMID:11118449, 11390381, 12897001"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 11118449, 11390381,
                     12897001; Product type r: regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator of the glucitol
                     operon"
                     /protein_id="NP_388495.1"
                     /db_xref="EnsemblGenomes-Gn:BSU06140"
                     /db_xref="EnsemblGenomes-Tr:CAB12433"
                     /db_xref="GOA:P39143"
                     /db_xref="InterPro:IPR002182"
                     /db_xref="InterPro:IPR003593"
                     /db_xref="InterPro:IPR011990"
                     /db_xref="InterPro:IPR013026"
                     /db_xref="InterPro:IPR019734"
                     /db_xref="InterPro:IPR024123"
                     /db_xref="InterPro:IPR027417"
                     /db_xref="SubtiList:BG10178"
                     /db_xref="UniProtKB/Swiss-Prot:P39143"
                     /translation="MAELENRKQFAQMLAPGVKTLKLHPDYKVRRKKNEKTGQSYIDK
                     IALQLGVSPNTIKSWIGQMGANYIPGRIDDGKLFGMIWIILEKTDLDIEWLTDLLEAT
                     TIPVIKPALPVWAASCLKKAKILRKDGLFGAPSEGEIENVVKRLFHDRPGQETNALTE
                     QPITHNLPSRWSGRFIGRSFDMEAIRQWMLSPSPVCLITGWAGMGKTTIALEAAYSCV
                     DDTSVWPAFNSIIWVSADWKGLSFSDFLNTIAYQLGRKEQIDKSINVKRFVVRNALAN
                     YTREKPILLIVDSIDTAERDIHEFITSLPQGVKVLLTARENVKQTYRESFGEMTAIQL
                     SGLDQTDAHEFFQQEVHHCLQTCNLPRKREKLEQLLHLSSDLKNEFISATAGNPKAMA
                     LSIAYMSDDDIPAQQLIHELGKAGYSLLELFEFLFGRTWDRCNEDTRKLWQTLCFFSK
                     PPDEKSLAAAAGLDARRFHYAMEQMRSYALIQPERSQGRTQYLAHQTVVAYGEQHLSE
                     QHEYEKEARNRWAHYYIDYAETHLKREQPNSIYWSYLLGRNLDQMKQEWPNILKVIQW
                     ASETEQKEILIELITRISHFLSRINLPLRIEYGRKAADAAHHLGQHTREAYFRIDTSG
                     WALMEVNDLDGALQQIEAGLKILEQSDAHDAYDLKVWGHALKARLFLKDGQQEKAETI
                     LNEIENQPISPTIQHRVLLVRGDLSFARGYHVEAIQLYEAANEISSTYGGEKTIEAYF
                     NLGVAYVKCDQFEKAEEAFEQMLYDKHNANQVELIYYHYGMAQLLYRKGEKTKAVESN
                     QKAIRLIDSWEPAIGIRGEVERLARATKENE*"
                     /label="gutR CDS"
     gene            complement(589000..591489)
                     /gene="gutR"
                     /locus_tag="BSU_06140"
                     /old_locus_tag="BSU06140"
                     /label="gutR gene"
     downshifts      complement(589022)
                     /Source="Nicolas_upshifts"
                     /id="D298"
                     /incds=0
                     /nref=56
                     /ntot=209
                     /MaxReadThrough="0.69715"
                     /MaxDrop="4.256"
                     /score="0.285109352"
                     /energy="-13.9"
                     /TU="NA"
                     /idTUdmin="U474"
                     /TUdmin=0
                     /isTUend="TRUE"
                     /label="downshifts"
     promotor_-10    complement(591503..591522)
                     /Source="Nicolas_upshift_promotors"
                     /id="U474"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.573426573426573"
                     /psig="0.995004995004995"
                     /xcortree=2305
                     /SigmaFactorBS="ctttcctgctgtataaaaggacagcggcactgtacttttatt
                     ttttCATATACAaaaaacgctggatTGATAAAATAGTACTAATAGgaggtgcaggctt
                     a"
                     /listShort="gutR"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(591529)
                     /Source="Nicolas_upshifts"
                     /id="U474"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.573426573426573"
                     /psig="0.995004995004995"
                     /xcortree=2305
                     /SigmaFactorBS="ctttcctgctgtataaaaggacagcggcactgtacttttatt
                     ttttCATATACAaaaaacgctggatTGATAAAATAGTACTAATAGgaggtgcaggctt
                     a"
                     /listShort="gutR"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(591536..591543)
                     /Source="Nicolas_upshift_promotors"
                     /id="U474"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.573426573426573"
                     /psig="0.995004995004995"
                     /xcortree=2305
                     /SigmaFactorBS="ctttcctgctgtataaaaggacagcggcactgtacttttatt
                     ttttCATATACAaaaaacgctggatTGATAAAATAGTACTAATAGgaggtgcaggctt
                     a"
                     /listShort="gutR"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-35    591592..591593
                     /Source="Nicolas_upshift_promotors"
                     /id="U475"
                     /multdbtbs="SigA"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.481518481518482"
                     /psig="0.848151848151848"
                     /xcortree=335
                     /SigmaFactorBS="aataaaagtacagtgccgctgtccttttatacagcaggaaag
                     gcTGttgaacgtgttaaaaAGCAGATAAAATGGGGGCAGtaacagagaaaacaaaaat
                     g"
                     /listShort="S220, gutB, gutP, ydjE"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     S_feature       591608..591690
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_667383_667465"
                     /HighExp="Lbstat, BI, M40t90, Mt0, M0t90, dia5, dia0,
                     Lbexp, Lbtran, LBGtran"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.848"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S220"
     upshifts        591608
                     /Source="Nicolas_upshifts"
                     /id="U475"
                     /multdbtbs="SigA"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.481518481518482"
                     /psig="0.848151848151848"
                     /xcortree=335
                     /SigmaFactorBS="aataaaagtacagtgccgctgtccttttatacagcaggaaag
                     gcTGttgaacgtgttaaaaAGCAGATAAAATGGGGGCAGtaacagagaaaacaaaaat
                     g"
                     /listShort="S220, gutB, gutP, ydjE"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-10    591609..591628
                     /Source="Nicolas_upshift_promotors"
                     /id="U475"
                     /multdbtbs="SigA"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.481518481518482"
                     /psig="0.848151848151848"
                     /xcortree=335
                     /SigmaFactorBS="aataaaagtacagtgccgctgtccttttatacagcaggaaag
                     gcTGttgaacgtgttaaaaAGCAGATAAAATGGGGGCAGtaacagagaaaacaaaaat
                     g"
                     /listShort="S220, gutB, gutP, ydjE"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     CDS             591691..592752
                     /gene="gutB"
                     /locus_tag="BSU_06150"
                     /old_locus_tag="BSU06150"
                     /EC_number="1.1.1.14"
                     /function="16.11: Scavenge (Catabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:1460002, 8195086, 8195087, 12897001, 19784641"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 1460002, 8195086,
                     8195087, 12897001, 19784641; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="glucitol (sorbitol) dehydrogenase"
                     /protein_id="NP_388496.1"
                     /db_xref="EnsemblGenomes-Gn:BSU06150"
                     /db_xref="EnsemblGenomes-Tr:CAB12434"
                     /db_xref="GOA:Q06004"
                     /db_xref="InterPro:IPR002328"
                     /db_xref="InterPro:IPR011032"
                     /db_xref="InterPro:IPR013149"
                     /db_xref="InterPro:IPR013154"
                     /db_xref="InterPro:IPR020843"
                     /db_xref="InterPro:IPR036291"
                     /db_xref="SubtiList:BG10177"
                     /db_xref="UniProtKB/Swiss-Prot:Q06004"
                     /translation="MTHTVPQNMKAAVMHNTREIKIETLPVPDINHDEVLIKVMAVGI
                     CGSDLHYYTNGRIGNYVVEKPFILGHECAGEIAAVGSSVDQFKVGDRVAVEPGVTCGR
                     CEACKEGRYNLCPDVQFLATPPVDGAFVQYIKMRQDFVFLIPDSLSYEEAALIEPFSV
                     GIHAAARTKLQPGSTIAIMGMGPVGLMAVAAAKAFGAGTIIVTDLEPLRLEAAKKMGA
                     THIINIREQDALEEIKTITNDRGVDVAWETAGNPAALQSALASVRRGGKLAIVGLPSQ
                     NEIPLNVPFIADNEIDIYGIFRYANTYPKGIEFLASGIVDTKHLVTDQYSLEQTQDAM
                     ERALQFKNECLKVMVYPNR*"
                     /label="gutB CDS"
     gene            591691..592752
                     /gene="gutB"
                     /locus_tag="BSU_06150"
                     /old_locus_tag="BSU06150"
                     /label="gutB gene"
     CDS             592826..594217
                     /gene="gutP"
                     /locus_tag="BSU_06160"
                     /old_locus_tag="BSU06160"
                     /function="16.1: Circulate"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 2b: Function from indirect experimental
                     evidences (e.g. phenotypes); PubMedId: 12897001, 22720735;
                     Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="H+-glucitol symporter; prophage region 3"
                     /protein_id="NP_388497.1"
                     /db_xref="EnsemblGenomes-Gn:BSU06160"
                     /db_xref="EnsemblGenomes-Tr:CAB12435"
                     /db_xref="GOA:O34368"
                     /db_xref="InterPro:IPR001927"
                     /db_xref="InterPro:IPR018043"
                     /db_xref="InterPro:IPR020846"
                     /db_xref="InterPro:IPR036259"
                     /db_xref="SubtiList:BG12795"
                     /db_xref="UniProtKB/Swiss-Prot:O34368"
                     /translation="MIGTEKVTALKAKHQSKSSTGLSWFERIGYGFGDMSYNIIFQFV
                     NAYLLFYYTDVGGIQPAVIATLFLVVRVLDAIFDPIMGLILDKTNTRWGKARPYLLWV
                     AFPFALFTFLCFTTPHFGETGNMVYAYVTYILLGMSFSMQTIPVNSLTGRMTNSVEER
                     TVLTTTRMILVYIGILLSISCATPLATAIGGEDQAFGFQMTALIYAAVSIVLNLFSFF
                     TVRERIQPKKRKKQGIKKTLSVLFKNKPLLMLISSFLAFAIGFNIKLSTMVYYFTYNV
                     NHKEFVFMGTVLFFGAALISNLFIPFFSEKWGRKQVMIITAALSLISYAGLHFTPYSS
                     IPLIFIWLFASGFFTTPLNTLAWGMVADCVDYAEWKTGIRADGVVISSMSFINKLGVA
                     LAGSFSAIYLGIAGYVANTDQTVASLNAIKNMNALIPGFFILLSIILIAFYPLTEKRY
                     KHIISELEQRSAR*"
                     /label="gutP CDS"
     gene            592826..594217
                     /gene="gutP"
                     /locus_tag="BSU_06160"
                     /old_locus_tag="BSU06160"
                     /label="gutP gene"
     promotor_-35    594244..594251
                     /Source="Nicolas_upshift_promotors"
                     /id="U476"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.871128871128871"
                     /psig="0.997002997002997"
                     /xcortree=489
                     /SigmaFactorBS="cgagataaatagatgtaaaatttttaatattcaaTGTTGTAT
                     ttatggcaaaaagTAATATACTGAGACTGTAATctagactttataaatgagtgtgata
                     a"
                     /listShort="ydjE"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    594265..594284
                     /Source="Nicolas_upshift_promotors"
                     /id="U476"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.871128871128871"
                     /psig="0.997002997002997"
                     /xcortree=489
                     /SigmaFactorBS="cgagataaatagatgtaaaatttttaatattcaaTGTTGTAT
                     ttatggcaaaaagTAATATACTGAGACTGTAATctagactttataaatgagtgtgata
                     a"
                     /listShort="ydjE"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        594270
                     /Source="Nicolas_upshifts"
                     /id="U476"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.871128871128871"
                     /psig="0.997002997002997"
                     /xcortree=489
                     /SigmaFactorBS="cgagataaatagatgtaaaatttttaatattcaaTGTTGTAT
                     ttatggcaaaaagTAATATACTGAGACTGTAATctagactttataaatgagtgtgata
                     a"
                     /listShort="ydjE"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             594312..595274
                     /gene="ydjE"
                     /locus_tag="BSU_06170"
                     /old_locus_tag="BSU06170"
                     /EC_number="2.7.1.-"
                     /function="16.11: Scavenge (Catabolism)"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 26483775, 22720735;
                     Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative sugar kinase (ribokinase family);
                     prophage region 3"
                     /protein_id="NP_388498.1"
                     /db_xref="EnsemblGenomes-Gn:BSU06170"
                     /db_xref="EnsemblGenomes-Tr:CAB12436"
                     /db_xref="GOA:O34768"
                     /db_xref="InterPro:IPR002173"
                     /db_xref="InterPro:IPR011611"
                     /db_xref="InterPro:IPR029056"
                     /db_xref="SubtiList:BG12796"
                     /db_xref="UniProtKB/Swiss-Prot:O34768"
                     /translation="MRSHSVVCIGELLIDFFCTDVDVDLMEGRQFLKSAGGAPANVSA
                     AIAKLGGDAAFSGKVGKDPFGYFLKRTLDAVHVDTSMLVMDEKAPTTLAFVSLKQNGE
                     RDFVFNRGADALFTLEDIDQEKLNEAKILHFGSATALLSDPFCSAYLRLMSIAKDNGQ
                     FISFDPNYREDLWRGRVSEFVSVAKKAIAVSDFVKVSDEELEIISGVKDHEKGVAILH
                     EIGANIVAVTLGKSGTLLSNGKDREIIPSIPVTSIDSTGAGDAFVGAALYQLANTDQI
                     QSVDADFVKLREIVAFANKVGALVCTKIGAIDALPSLDEIGVSL*"
                     /label="ydjE CDS"
     gene            594312..595274
                     /gene="ydjE"
                     /locus_tag="BSU_06170"
                     /old_locus_tag="BSU06170"
                     /label="ydjE gene"
     downshifts      595259
                     /Source="Nicolas_upshifts"
                     /id="D299"
                     /incds=0
                     /nref=86
                     /ntot=213
                     /MaxReadThrough="2.99546"
                     /MaxDrop="4.52045"
                     /score="16.4550614"
                     /energy="-14"
                     /TU="NA"
                     /idTUdmin="U475"
                     /TUdmin="-1"
                     /isTUend="TRUE"
                     /label="downshifts"
     promotor_-35    595399..595408
                     /Source="Nicolas_upshift_promotors"
                     /id="U477"
                     /multdbtbs="SigW"
                     /comp="M9"
                     /sig="SigWXY"
                     /pcomp="0.996003996003996"
                     /psig="0.996003996003996"
                     /xcortree=1663
                     /SigmaFactorBS="agttgtatattttttgtttgaaatgtcattttttattaaaaa
                     agTGAAACTTTTaacgataataaaTAGTATATGTAACAAGggttaccgaattagcttt
                     a"
                     /listShort="pspA, S221, ydjG, ydjH, ydjI"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     upshifts        595415
                     /Source="Nicolas_upshifts"
                     /id="U477"
                     /multdbtbs="SigW"
                     /comp="M9"
                     /sig="SigWXY"
                     /pcomp="0.996003996003996"
                     /psig="0.996003996003996"
                     /xcortree=1663
                     /SigmaFactorBS="agttgtatattttttgtttgaaatgtcattttttattaaaaa
                     agTGAAACTTTTaacgataataaaTAGTATATGTAACAAGggttaccgaattagcttt
                     a"
                     /listShort="pspA, S221, ydjG, ydjH, ydjI"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-10    595421..595436
                     /Source="Nicolas_upshift_promotors"
                     /id="U477"
                     /multdbtbs="SigW"
                     /comp="M9"
                     /sig="SigWXY"
                     /pcomp="0.996003996003996"
                     /psig="0.996003996003996"
                     /xcortree=1663
                     /SigmaFactorBS="agttgtatattttttgtttgaaatgtcattttttattaaaaa
                     agTGAAACTTTTaacgataataaaTAGTATATGTAACAAGggttaccgaattagcttt
                     a"
                     /listShort="pspA, S221, ydjG, ydjH, ydjI"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     CDS             595470..596153
                     /gene="pspA"
                     /locus_tag="BSU_06180"
                     /old_locus_tag="BSU06180"
                     /function="16.5: Explore"
                     /experiment="publication(s) with functional evidences,
                     PMID:11454200"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 11454200; Product type h:
                     extrachromosomal origin"
                     /codon_start=1
                     /transl_table=11
                     /product="phage shock protein A homolog regulator;
                     prophage region 3"
                     /protein_id="NP_388499.1"
                     /db_xref="EnsemblGenomes-Gn:BSU06180"
                     /db_xref="EnsemblGenomes-Tr:CAB12437"
                     /db_xref="GOA:P54617"
                     /db_xref="InterPro:IPR007157"
                     /db_xref="SubtiList:BG12797"
                     /db_xref="UniProtKB/Swiss-Prot:P54617"
                     /translation="MSIIGRFKDIMSANINALLDKAENPEKMVDQYLRNMNSDLAKVK
                     AETAAVMAEEQRAKREYHECQADMEKMESYAMKALQAGNESDARKFLERKTSLESKLS
                     ELQAANQIAATNAAQMRKMHDKLVSDIGELEARKNMIKAKWAVAKTQERMNKLGASVS
                     STSQSMSAFGRMEDKVNKALDQANAMAELNSAPQDDMADLSAKYDTGGSSQVDDELAA
                     LKAKMMLDK*"
                     /label="pspA CDS"
     gene            595470..596153
                     /gene="pspA"
                     /locus_tag="BSU_06180"
                     /old_locus_tag="BSU06180"
                     /label="pspA gene"
     S_feature       596154..596218
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_671929_671993"
                     /HighExp="Salt, S0, aero, T-0.40H, T-1.40H, SMMPr,
                     T-1.10H, T0.0H, Cold, GM 120"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigWXY"
                     /TUshortPSig="0.996"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S221"
     CDS             596219..597244
                     /gene="ydjG"
                     /locus_tag="BSU_06190"
                     /old_locus_tag="BSU06190"
                     /function="16.5: Explore"
                     /function="16.9: Replicate"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; Product type h : extrachromosomal
                     origin"
                     /codon_start=1
                     /transl_table=11
                     /product="putative phage replication protein; prophage
                     region 3"
                     /protein_id="NP_388500.1"
                     /db_xref="EnsemblGenomes-Gn:BSU06190"
                     /db_xref="EnsemblGenomes-Tr:CAB12438"
                     /db_xref="GOA:O34434"
                     /db_xref="InterPro:IPR013137"
                     /db_xref="SubtiList:BG12798"
                     /db_xref="UniProtKB/Swiss-Prot:O34434"
                     /translation="MIISYKCPNCGSDMAFDSETGSLSCSSCGRQDNIESLPKENIAA
                     RFSDDEAKEYQCKNCGAVLITEAETTATTCSFCGGAAILADRLSGHLAPAKVIPFTIS
                     KQEAEQAFRKWCKKGLLTPRGFMSADRIKSITGMYIPFWMFDLNSEVQVRANCTRVHQ
                     YEEGDYICTETEHFEAFRDINLDYLKIPVDASEKMKDELMDKLEPYSYEELKDFQTAY
                     LAGYIAEKYNYTDEELFPRAKEKISSYIDSYIHSTFSGYTSVNVRDKHIHTKNVNSFY
                     VLLPVWMVSYDYERAEHIFAMNGQTGKVVGKPPISRGKVAAWFSGIAGGTFLALKLVS
                     LMMGGGF*"
                     /label="ydjG CDS"
     gene            596219..597244
                     /gene="ydjG"
                     /locus_tag="BSU_06190"
                     /old_locus_tag="BSU06190"
                     /label="ydjG gene"
     CDS             597244..598008
                     /gene="ydjH"
                     /locus_tag="BSU_06200"
                     /old_locus_tag="BSU06200"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved hypothetical protein; prophage region
                     3"
                     /protein_id="NP_388501.1"
                     /db_xref="EnsemblGenomes-Gn:BSU06200"
                     /db_xref="EnsemblGenomes-Tr:CAB12439"
                     /db_xref="GOA:O35004"
                     /db_xref="InterPro:IPR007621"
                     /db_xref="SubtiList:BG12799"
                     /db_xref="UniProtKB/Swiss-Prot:O35004"
                     /translation="MRGFFGKAIFVVLAVFIMMPLLGIEAVRASELQQHVYDRAHLLS
                     KAEIGKLESLSAKLGAKRDTDFIIITTKSTNGEDIADYTGDFYDRYGKGSTAILTIDM
                     TNREVFIAGFKKAEQYLDNSRLNSIRNTISSDLSNENYFEAFETYIQLSYKDMGIKPG
                     VNPDNIFFTWWFQLIAAIAVGGIAVSIMLYHAGGKVTVNGSTYMDQRTSDVIDQYDTY
                     IRTTVTRERKPSDKDSGSDGGVTKGGTSYSGSRGSF*"
                     /label="ydjH CDS"
     gene            597244..598008
                     /gene="ydjH"
                     /locus_tag="BSU_06200"
                     /old_locus_tag="BSU06200"
                     /label="ydjH gene"
     CDS             598039..599010
                     /gene="ydjI"
                     /locus_tag="BSU_06210"
                     /old_locus_tag="BSU06210"
                     /function="16.5: Explore"
                     /function="16.8: Protect"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 22720735; Product type
                     h: extrachromosomal origin"
                     /codon_start=1
                     /transl_table=11
                     /product="putative phage protein"
                     /protein_id="NP_388502.1"
                     /db_xref="EnsemblGenomes-Gn:BSU06210"
                     /db_xref="EnsemblGenomes-Tr:CAB12440"
                     /db_xref="InterPro:IPR033880"
                     /db_xref="InterPro:IPR036013"
                     /db_xref="SubtiList:BG12800"
                     /db_xref="UniProtKB/Swiss-Prot:O34789"
                     /translation="MSFFRNQLANVVEWEEFRDDMIFYKWNNREIKKGSRLIIRPGQD
                     AVFLNNGRVEGVFQDDGDYDIESEIIPFLSTLKGFKFGFNSGMRAEVLFVNTKEFTVR
                     WGTKQAINIPAAGMPGGMPIRANGTFNFKVQDYISLIDKIAGVKDQYFVEDIKTRIIS
                     ILDQLLMKWITREGKDMFNLQANAFDIAKGIQEDLDMQLISDGMTVTGFQIMSFNYPQ
                     EVQDMITKNASYGMVGDVNRYQQISMTDGMASGKMSGSGAASDMAGMMMGMNMANQMM
                     NQMNQNQQAQSSGPQSTGSGSKPNFCPNCGTKTGEANFCPNCGQKLV*"
                     /label="ydjI CDS"
     gene            598039..599010
                     /gene="ydjI"
                     /locus_tag="BSU_06210"
                     /old_locus_tag="BSU06210"
                     /label="ydjI gene"
     downshifts      599000
                     /Source="Nicolas_upshifts"
                     /id="D300"
                     /incds=0
                     /nref=180
                     /ntot=247
                     /MaxReadThrough="2.71622"
                     /MaxDrop="5.81579"
                     /score="16.72046"
                     /energy="-11.1"
                     /TU="U477"
                     /idTUdmin="U477"
                     /TUdmin="-44"
                     /isTUend="FALSE"
                     /label="downshifts"
     downshifts      599044
                     /Source="Nicolas_upshifts"
                     /id="D301"
                     /incds=0
                     /nref=1
                     /ntot=2
                     /MaxReadThrough="2.13813"
                     /MaxDrop="3.25329"
                     /score="16.72046"
                     /energy="-11.1"
                     /TU="NA"
                     /idTUdmin="U477"
                     /TUdmin=0
                     /isTUend="TRUE"
                     /label="downshifts"
     CDS             complement(599057..600082)
                     /gene="ydjJ"
                     /locus_tag="BSU_06220"
                     /old_locus_tag="BSU06220"
                     /function="16.1: Circulate"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="putative membrane associated potassium channel;
                     prophage region 3"
                     /protein_id="NP_388503.1"
                     /db_xref="EnsemblGenomes-Gn:BSU06220"
                     /db_xref="EnsemblGenomes-Tr:CAB12441"
                     /db_xref="GOA:O34733"
                     /db_xref="InterPro:IPR013099"
                     /db_xref="SubtiList:BG12801"
                     /db_xref="UniProtKB/Swiss-Prot:O34733"
                     /translation="MNEGYIIAGLLLLTAGMIDFLWTTLWLESGAGPITRCLSAWLWK
                     GCRKISGDHAKVLSMAGPLLLCLTLVIWISLFWSGWVLIYSSDPHSLMETQSKEPASW
                     SDRIYFSGYVMFTLGNGDLAPNGGLWKLVTIIETAQGLLTITFSVTYLISVLSAVNQK
                     RSFAQSVLSLGHDGTEIVHNAWNGKDFHDIDFLLVAASSELGKLTAQHNAFPILHFYH
                     STQHQESSIIAVAVLDEALTIFKYGIPEQYQPNQLHIKEARSSIKNYLDTVHTAYIHP
                     AEQAPPEPDISKLQQSGIPALSKQTFQIAVNSIKERRQLLLGIIQAGARKWPVQEQAI
                     GNAYSPK*"
                     /label="ydjJ CDS"
     gene            complement(599057..600082)
                     /gene="ydjJ"
                     /locus_tag="BSU_06220"
                     /old_locus_tag="BSU06220"
                     /label="ydjJ gene"
     promotor_-10    complement(600114..600133)
                     /Source="Nicolas_upshift_promotors"
                     /id="U478"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp=1
                     /psig=1
                     /xcortree=251
                     /SigmaFactorBS="ccacctatttttctctgtaaaatcaaacattcgttcaatTGT
                     TTCAgactcaggataaaAGGAAATAGAGAAGAAAATAaaagaaggctgacttaaggga
                     g"
                     /listShort="ydjJ"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(600132)
                     /Source="Nicolas_upshifts"
                     /id="U478"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp=1
                     /psig=1
                     /xcortree=251
                     /SigmaFactorBS="ccacctatttttctctgtaaaatcaaacattcgttcaatTGT
                     TTCAgactcaggataaaAGGAAATAGAGAAGAAAATAaaagaaggctgacttaaggga
                     g"
                     /listShort="ydjJ"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(600147..600153)
                     /Source="Nicolas_upshift_promotors"
                     /id="U478"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp=1
                     /psig=1
                     /xcortree=251
                     /SigmaFactorBS="ccacctatttttctctgtaaaatcaaacattcgttcaatTGT
                     TTCAgactcaggataaaAGGAAATAGAGAAGAAAATAaaagaaggctgacttaaggga
                     g"
                     /listShort="ydjJ"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-35    600342..600349
                     /Source="Nicolas_upshift_promotors"
                     /id="U479"
                     /multdbtbs="SigA"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.999000999001"
                     /psig=1
                     /xcortree=323
                     /SigmaFactorBS="tgattttccttttatagagtaaaaaattttcagaaatttaTA
                     TTGACTgaaagcgtttttatAATTATGATAATATCAGATAtaacaaaaatgtcactat
                     a"
                     /listShort="S222, iolT"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     upshifts        600362
                     /Source="Nicolas_upshifts"
                     /id="U479"
                     /multdbtbs="SigA"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.999000999001"
                     /psig=1
                     /xcortree=323
                     /SigmaFactorBS="tgattttccttttatagagtaaaaaattttcagaaatttaTA
                     TTGACTgaaagcgtttttatAATTATGATAATATCAGATAtaacaaaaatgtcactat
                     a"
                     /listShort="S222, iolT"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     S_feature       600364..600666
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_676139_676441"
                     /HighExp="M0t90, M40t90, Lbtran, T0.30H, BI, T1.0H,
                     M9-stat, S1, T1.30H, S0"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="0.28450700000000001"
                     /TUshortSig="SigA"
                     /TUshortPSig=1
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S222"
     promotor_-10    600364..600383
                     /Source="Nicolas_upshift_promotors"
                     /id="U479"
                     /multdbtbs="SigA"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.999000999001"
                     /psig=1
                     /xcortree=323
                     /SigmaFactorBS="tgattttccttttatagagtaaaaaattttcagaaatttaTA
                     TTGACTgaaagcgtttttatAATTATGATAATATCAGATAtaacaaaaatgtcactat
                     a"
                     /listShort="S222, iolT"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     CDS             600667..602088
                     /gene="iolT"
                     /locus_tag="BSU_06230"
                     /old_locus_tag="BSU06230"
                     /function="16.1: Circulate"
                     /experiment="publication(s) with functional evidences,
                     PMID:11807058, 15849754, 16850406, 22720735"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 11807058, 15849754,
                     16850406, 22720735; Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="myo-inositol transporter"
                     /protein_id="NP_388504.1"
                     /db_xref="EnsemblGenomes-Gn:BSU06230"
                     /db_xref="EnsemblGenomes-Tr:CAB12442"
                     /db_xref="GOA:O34718"
                     /db_xref="InterPro:IPR003663"
                     /db_xref="InterPro:IPR005828"
                     /db_xref="InterPro:IPR005829"
                     /db_xref="InterPro:IPR020846"
                     /db_xref="InterPro:IPR036259"
                     /db_xref="SubtiList:BG12802"
                     /db_xref="UniProtKB/Swiss-Prot:O34718"
                     /translation="MNKQGNQMSFLRTIILVSTFGGLLFGYDTGVLNGALPYMGEPDQ
                     LNLNAFTEGLVTSSLLFGAALGAVFGGRMSDFNGRRKNILFLAVIFFISTIGCTFAPN
                     VTVMIISRFVLGIAVGGASVTVPAYLAEMSPVESRGRMVTQNELMIVSGQLLAFVFNA
                     ILGTTMGDNSHVWRFMLVIASLPALFLFFGMIRMPESPRWLVSKGRKEDALRVLKKIR
                     DEKRAAAELQEIEFAFKKEDQLEKATFKDLSVPWVRRIVFIGLGIAIVQQITGVNSIM
                     YYGTEILRNSGFQTEAALIGNIANGVISVLATFVGIWLLGRVGRRPMLMTGLIGTTTA
                     LLLIGIFSLVLEGSPALPYVVLSLTVTFLAFQQGAISPVTWLMLSEIFPLRLRGLGMG
                     VTVFCLWMVNFAVSFTFPILLAAIGLSTTFFIFVGLGICSVLFVKRFLPETKGLSLEQ
                     LEENFRAYDHSGAKKDSGAEVIG*"
                     /label="iolT CDS"
     gene            600667..602088
                     /gene="iolT"
                     /locus_tag="BSU_06230"
                     /old_locus_tag="BSU06230"
                     /label="iolT gene"
     downshifts      602080
                     /Source="Nicolas_upshifts"
                     /id="D302"
                     /incds=0
                     /nref=11
                     /ntot=24
                     /MaxReadThrough="2.82455"
                     /MaxDrop="8.02371"
                     /score="11.3880907"
                     /energy="-11.2"
                     /TU="NA"
                     /idTUdmin="U479"
                     /TUdmin=0
                     /isTUend="TRUE"
                     /label="downshifts"
     downshifts      complement(602136)
                     /Source="Nicolas_upshifts"
                     /id="D303"
                     /incds=0
                     /nref=242
                     /ntot=272
                     /MaxReadThrough="1.00274"
                     /MaxDrop="9.32541"
                     /score="13.6781112"
                     /energy="-11.2"
                     /TU="NA"
                     /idTUdmin="U482"
                     /TUdmin="-2"
                     /isTUend="TRUE"
                     /label="downshifts"
     CDS             complement(602136..603176)
                     /gene="bdhA"
                     /locus_tag="BSU_06240"
                     /old_locus_tag="BSU06240"
                     /EC_number="1.1.1.4"
                     /function="16.11: Scavenge (Catabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:12469342, 18820069, 24525333, 26428232, 22720735"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 12469342, 18820069,
                     24525333, 26428232, 22720735; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="acetoin reductase/2,3-butanediol dehydrogenase"
                     /protein_id="NP_388505.1"
                     /db_xref="EnsemblGenomes-Gn:BSU06240"
                     /db_xref="EnsemblGenomes-Tr:CAB12443"
                     /db_xref="GOA:O34788"
                     /db_xref="InterPro:IPR002328"
                     /db_xref="InterPro:IPR011032"
                     /db_xref="InterPro:IPR013149"
                     /db_xref="InterPro:IPR013154"
                     /db_xref="InterPro:IPR020843"
                     /db_xref="InterPro:IPR036291"
                     /db_xref="SubtiList:BG12803"
                     /db_xref="UniProtKB/Swiss-Prot:O34788"
                     /translation="MKAARWHNQKDIRIEHIEEPKTEPGKVKIKVKWCGICGSDLHEY
                     LGGPIFIPVDKPHPLTNETAPVTMGHEFSGEVVEVGEGVENYKVGDRVVVEPIFATHG
                     HQGAYNLDEQMGFLGLAGGGGGFSEYVSVDEELLFKLPDELSYEQGALVEPSAVALYA
                     VRSSKLKAGDKAAVFGCGPIGLLVIEALKAAGATDIYAVELSPERQQKAEELGAIIVD
                     PSKTDDVVAEIAERTGGGVDVAFEVTGVPVVLRQAIQSTTIAGETVIVSIWEKGAEIH
                     PNDIVIKERTVKGIIGYRDIFPAVLSLMKEGYFSADKLVTKKIVLDDLIEEGFGALIK
                     EKSQVKILVRPN*"
                     /label="bdhA CDS"
     gene            complement(602136..603176)
                     /gene="bdhA"
                     /locus_tag="BSU_06240"
                     /old_locus_tag="BSU06240"
                     /label="bdhA gene"
     promotor_-35    602716..602725
                     /Source="Nicolas_upshift_promotors"
                     /id="U480"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp="0.998001998001998"
                     /psig="0.998001998001998"
                     /xcortree=1246
                     /SigmaFactorBS="agtttgcttgagcggacagcgtatagagcaactgcaGAAGGT
                     TCAAcgagcgcgccttgTTCATATGATAATTCATCAGgaagtttgaacaaaagctctt
                     c"
                     /listShort="S223"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    602739..602758
                     /Source="Nicolas_upshift_promotors"
                     /id="U480"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp="0.998001998001998"
                     /psig="0.998001998001998"
                     /xcortree=1246
                     /SigmaFactorBS="agtttgcttgagcggacagcgtatagagcaactgcaGAAGGT
                     TCAAcgagcgcgccttgTTCATATGATAATTCATCAGgaagtttgaacaaaagctctt
                     c"
                     /listShort="S223"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     S_feature       602740..603275
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_678515_679050"
                     /HighExp="C30, Gly, S6, C90, S8, BT, S7, Sw, Fru, Lbstat"
                     /AntisenseName="bdhA"
                     /AntisenseCor="-0.174163895138467"
                     /AntisenseRegPval="-2.4"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigK"
                     /TUshortPSig="0.998"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S223"
     upshifts        602740
                     /Source="Nicolas_upshifts"
                     /id="U480"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp="0.998001998001998"
                     /psig="0.998001998001998"
                     /xcortree=1246
                     /SigmaFactorBS="agtttgcttgagcggacagcgtatagagcaactgcaGAAGGT
                     TCAAcgagcgcgccttgTTCATATGATAATTCATCAGgaagtttgaacaaaagctctt
                     c"
                     /listShort="S223"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     S_feature       complement(603177..603471)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_678952_679246_c"
                     /HighExp="Lbtran, BI, T1.0H, M40t90, LBGstat, LoTm,
                     T0.30H, LPhT, Lbstat, ferm"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.99"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S224"
     misc_feature    603276..603295
                     /Source="Nicolas_upshift_promotors"
                     /id="U481"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.866133866133866"
                     /psig="0.994005994005994"
                     /xcortree=1752
                     /SigmaFactorBS="accggtcaatatgaactgttcacaaaatcgccatttttaaaa
                     ccaaaaaagaaatgaaaTTTTTATATAATATAATCTAcgtttttttgaaaaaaagaaa
                     c"
                     /listShort="S225"
                     /listLong="ydjM, ydjN"
                     /label="promotor_single_box"
                     /note="Geneious type: promotor_single_box"
     S_feature       603277..603574
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_679052_679349"
                     /HighExp="G180, Paraq, Oxctl, H2O2, G135, G150, MG 5, C30,
                     UNK1, MG 15"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.994"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S225"
     upshifts        603277
                     /Source="Nicolas_upshifts"
                     /id="U481"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.866133866133866"
                     /psig="0.994005994005994"
                     /xcortree=1752
                     /SigmaFactorBS="accggtcaatatgaactgttcacaaaatcgccatttttaaaa
                     ccaaaaaagaaatgaaaTTTTTATATAATATAATCTAcgtttttttgaaaaaaagaaa
                     c"
                     /listShort="S225"
                     /listLong="ydjM, ydjN"
                     /label="upshifts"
     misc_feature    complement(603466..603480)
                     /Source="Nicolas_upshift_promotors"
                     /id="U482"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.598401598401598"
                     /psig="0.99000999000999"
                     /xcortree=3201
                     /SigmaFactorBS="tacaaagtcaaaaaagttacctctgctaaaataaaccatgga
                     agattatccTATTATAATAGCAGTattagagttataattattgatagagtagttgtcg
                     c"
                     /listShort="S224, bdhA"
                     /GFF_Attribute="listLong"
                     /label="promotor_single_box"
                     /note="Geneious type: promotor_single_box"
     upshifts        complement(603471)
                     /Source="Nicolas_upshifts"
                     /id="U482"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.598401598401598"
                     /psig="0.99000999000999"
                     /xcortree=3201
                     /SigmaFactorBS="tacaaagtcaaaaaagttacctctgctaaaataaaccatgga
                     agattatccTATTATAATAGCAGTattagagttataattattgatagagtagttgtcg
                     c"
                     /listShort="S224, bdhA"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-10    603573..603592
                     /Source="Nicolas_upshift_promotors"
                     /id="U483"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.462537462537463"
                     /psig="0.998001998001998"
                     /xcortree=3034
                     /SigmaFactorBS="cttttttgactttgtaacattactgtaaggatattgaaAtaa
                     aaaatagctggttgaTCGTGTATAATCTTCCTAGAtgttaacaaacagggggacgaaa
                     t"
                     /listShort="ydjM, ydjN"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        603576
                     /Source="Nicolas_upshifts"
                     /id="U483"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.462537462537463"
                     /psig="0.998001998001998"
                     /xcortree=3034
                     /SigmaFactorBS="cttttttgactttgtaacattactgtaaggatattgaaAtaa
                     aaaatagctggttgaTCGTGTATAATCTTCCTAGAtgttaacaaacagggggacgaaa
                     t"
                     /listShort="ydjM, ydjN"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             603615..603986
                     /gene="walM"
                     /locus_tag="BSU_06250"
                     /old_locus_tag="BSU06250"
                     /experiment="publication(s) with functional evidences,
                     PMID:17581128, 20487291"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 17581128, 20487291;
                     Product type f: factor"
                     /codon_start=1
                     /transl_table=11
                     /product="protein involved in cell wall metabolism"
                     /protein_id="NP_388506.1"
                     /db_xref="EnsemblGenomes-Gn:BSU06250"
                     /db_xref="EnsemblGenomes-Tr:CAB12444"
                     /db_xref="InterPro:IPR009009"
                     /db_xref="InterPro:IPR036908"
                     /db_xref="SubtiList:BG11036"
                     /db_xref="UniProtKB/Swiss-Prot:P40775"
                     /translation="MLKKVILAAFILVGSTLGAFSFSSDASAKHVNGNITWYNGVGKK
                     GSSGKKLGHWDCATKIGFDVPRNGTKIRAYAKAKPKKVITVYKNDVGRMPNAVLDVSP
                     KAFKALGYPLSKGKVAGHYSY*"
                     /label="walM CDS"
     gene            603615..603986
                     /gene="walM"
                     /locus_tag="BSU_06250"
                     /old_locus_tag="BSU06250"
                     /label="walM gene"
     downshifts      603972
                     /Source="Nicolas_upshifts"
                     /id="D304"
                     /incds=0
                     /nref=5
                     /ntot=52
                     /MaxReadThrough="5.74148"
                     /MaxDrop="2.8439"
                     /score="-1.55787542"
                     /energy="-7.4"
                     /TU="U483"
                     /idTUdmin="U481"
                     /TUdmin=418
                     /isTUend="FALSE"
                     /label="downshifts"
     CDS             604052..605098
                     /gene="ydjN"
                     /locus_tag="BSU_06260"
                     /old_locus_tag="BSU06260"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; Product type m: membrane
                     component"
                     /codon_start=1
                     /transl_table=11
                     /product="putative membrane protein"
                     /protein_id="NP_388507.1"
                     /db_xref="EnsemblGenomes-Gn:BSU06260"
                     /db_xref="EnsemblGenomes-Tr:CAB12445"
                     /db_xref="InterPro:IPR011659"
                     /db_xref="InterPro:IPR015943"
                     /db_xref="SubtiList:BG12804"
                     /db_xref="UniProtKB/Swiss-Prot:O34353"
                     /translation="MKKRIILLLAVIIAAAAAGVAFYVAKDKGHEKAADVSVNTESGD
                     ELLVSITDTDLLTKYYENDKVIHEEKLTSYPAFALDQKQQVLYYTGNNEQNEMRLFKL
                     DLKSHKKTMLYKGAESADSLFLSKDRSTIYFRLGKADESNFRIAAFDLKTKKYKNLYP
                     AANDQDDTVSSFFYNQKNDSFALLHYSVEEDYKKTDEANEKGIDPEPTTIHFAEGRQN
                     KFNELKSLNQFISDIAVSDDDKRILFTSYTQKGTEQTASIQMLNADTKKYESIISNQK
                     SFKLLIDAQPQFSKDGKNIYFLAEAKGAKKLKDETGREAKVRTIYSYSLENKTFKKVW
                     ENPNGIINSFFVIN*"
                     /label="ydjN CDS"
     gene            604052..605098
                     /gene="ydjN"
                     /locus_tag="BSU_06260"
                     /old_locus_tag="BSU06260"
                     /label="ydjN gene"
     downshifts      605072
                     /Source="Nicolas_upshifts"
                     /id="D305"
                     /incds=0
                     /nref=41
                     /ntot=177
                     /MaxReadThrough="1.73572"
                     /MaxDrop="4.49184"
                     /score="21.8200083"
                     /energy="-13.9"
                     /TU="NA"
                     /idTUdmin="U483"
                     /TUdmin=0
                     /isTUend="TRUE"
                     /label="downshifts"
     CDS             complement(605132..605290)
                     /gene="ydzJ"
                     /locus_tag="BSU_06269"
                     /old_locus_tag="BSU06269"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 5: Unknown function"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_003097689.1"
                     /db_xref="EnsemblGenomes-Gn:BSU06269"
                     /db_xref="EnsemblGenomes-Tr:CAX52576"
                     /db_xref="GOA:O24817"
                     /db_xref="UniProtKB/Swiss-Prot:O24817"
                     /translation="MISNQQQKDLKKRAAFKKLNVAMNSYVELLFLSVPLIHIFKWLG
                     SLALHLIH*"
                     /label="ydzJ CDS"
     gene            complement(605132..605290)
                     /gene="ydzJ"
                     /locus_tag="BSU_06269"
                     /old_locus_tag="BSU06269"
                     /label="ydzJ gene"
     downshifts      complement(605148)
                     /Source="Nicolas_upshifts"
                     /id="D306"
                     /incds=0
                     /nref=23
                     /ntot=155
                     /MaxReadThrough="0.7906"
                     /MaxDrop="3.61386"
                     /score="9.10659473"
                     /energy="-10.1"
                     /TU="NA"
                     /idTUdmin="U487"
                     /TUdmin=0
                     /isTUend="TRUE"
                     /label="downshifts"
     S_feature       complement(605347..605479)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_681122_681254_c"
                     /HighExp="LoTm, S8, S5, S6, S4, B36, S7, Cold, B60, Salt"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA, SigEF, SigWXY"
                     /TUshortPSig="0.994, 1, 1"
                     /TUlongSig="SigK"
                     /TUlongPSig="0.994"
                     /label="S226"
     downshifts      complement(605390)
                     /Source="Nicolas_upshifts"
                     /id="D307"
                     /incds=0
                     /nref=57
                     /ntot=272
                     /MaxReadThrough="3.03092"
                     /MaxDrop="6.46708"
                     /score="5.41743429"
                     /energy="-8.4"
                     /TU="U484,U486,U487"
                     /idTUdmin="U484"
                     /TUdmin="-22"
                     /isTUend="TRUE"
                     /label="downshifts"
     CDS             complement(605480..605689)
                     /gene="ydjO"
                     /locus_tag="BSU_06270"
                     /old_locus_tag="BSU06270"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms; PubMedId: 28197687"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved hypothetical protein"
                     /protein_id="NP_388508.1"
                     /db_xref="EnsemblGenomes-Gn:BSU06270"
                     /db_xref="EnsemblGenomes-Tr:CAB12446"
                     /db_xref="InterPro:IPR025916"
                     /db_xref="SubtiList:BG12805"
                     /db_xref="UniProtKB/Swiss-Prot:O34759"
                     /translation="MSYYNKRNQEPLPKEDVSTWECTKEDCNGWTRKNFASSDTPLCP
                     LCGSKMVDGIRSLVNLQNNSQTKTS*"
                     /label="ydjO CDS"
     gene            complement(605480..605689)
                     /gene="ydjO"
                     /locus_tag="BSU_06270"
                     /old_locus_tag="BSU06270"
                     /label="ydjO gene"
     promotor_-10    complement(605722..605741)
                     /Source="Nicolas_upshift_promotors"
                     /id="U484"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.66033966033966"
                     /psig="0.994005994005994"
                     /xcortree=586
                     /SigmaFactorBS="tggggttattggaaagtcataaagaaaaaggaattAggagat
                     tagggaaaagTATGAGACAATAGGAAATGTgcagtaaaatacatgagggaagaagtga
                     c"
                     /listShort="ydjO, S226"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(605733)
                     /Source="Nicolas_upshifts"
                     /id="U484"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.66033966033966"
                     /psig="0.994005994005994"
                     /xcortree=586
                     /SigmaFactorBS="tggggttattggaaagtcataaagaaaaaggaattAggagat
                     tagggaaaagTATGAGACAATAGGAAATGTgcagtaaaatacatgagggaagaagtga
                     c"
                     /listShort="ydjO, S226"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             complement(605772..606587)
                     /gene="ydjP"
                     /locus_tag="BSU_06280"
                     /old_locus_tag="BSU06280"
                     /function="16.11: Scavenge (Catabolism)"
                     /function="16.8: Protect"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 9987136; Product type
                     e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative aminoacrylate hydrolase"
                     /protein_id="NP_388509.1"
                     /db_xref="EnsemblGenomes-Gn:BSU06280"
                     /db_xref="EnsemblGenomes-Tr:CAB12447"
                     /db_xref="GOA:O34592"
                     /db_xref="InterPro:IPR000073"
                     /db_xref="InterPro:IPR029058"
                     /db_xref="SubtiList:BG12806"
                     /db_xref="UniProtKB/Swiss-Prot:O34592"
                     /translation="MPYIILEDQTRLYYETHGSGTPILFIHGVLMSGQFFHKQFSVLS
                     ANYQCIRLDLRGHGESDKVLHGHTISQYARDIREFLNAMELDHVVLAGWSMGAFVVWD
                     YLNQFGNDNIQAAVIIDQSASDYQWEGWEHGPFDFDGLKTAMHAIQTDPLPFYESFIQ
                     NMFAEPPAETETEWMLAEILKQPAAISSTILFNQTAADYRGTLQNINVPALLCFGEDK
                     KFFSTAAGEHLRSNIPNATLVTFPKSSHCPFLEEPDAFNSTLLSFLDGVIGKS*"
                     /label="ydjP CDS"
     gene            complement(605772..606587)
                     /gene="ydjP"
                     /locus_tag="BSU_06280"
                     /old_locus_tag="BSU06280"
                     /label="ydjP gene"
     promotor_-35    606414..606423
                     /Source="Nicolas_upshift_promotors"
                     /id="U485"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp="0.994005994005994"
                     /psig="0.994005994005994"
                     /xcortree=1434
                     /SigmaFactorBS="tgggaaatggtgtggccgtgaagcactttgtcagattcGCCG
                     TGTCCTctaagatcaagaCGAATACATTGATAATTGGCagaaagcaccgaaaattgtt
                     t"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    606436..606455
                     /Source="Nicolas_upshift_promotors"
                     /id="U485"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp="0.994005994005994"
                     /psig="0.994005994005994"
                     /xcortree=1434
                     /SigmaFactorBS="tgggaaatggtgtggccgtgaagcactttgtcagattcGCCG
                     TGTCCTctaagatcaagaCGAATACATTGATAATTGGCagaaagcaccgaaaattgtt
                     t"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        606436
                     /Source="Nicolas_upshifts"
                     /id="U485"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp="0.994005994005994"
                     /psig="0.994005994005994"
                     /xcortree=1434
                     /SigmaFactorBS="tgggaaatggtgtggccgtgaagcactttgtcagattcGCCG
                     TGTCCTctaagatcaagaCGAATACATTGATAATTGGCagaaagcaccgaaaattgtt
                     t"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             complement(606600..607589)
                     /gene="yeaA"
                     /locus_tag="BSU_06290"
                     /old_locus_tag="BSU06290"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved hypothetical protein"
                     /protein_id="NP_388510.1"
                     /db_xref="EnsemblGenomes-Gn:BSU06290"
                     /db_xref="EnsemblGenomes-Tr:CAB12448"
                     /db_xref="InterPro:IPR025062"
                     /db_xref="SubtiList:BG12210"
                     /db_xref="UniProtKB/Swiss-Prot:O34803"
                     /translation="MLTHDLHEKTKHYISIYAELKTKLKWKVSHDQILMLISSAYIVN
                     KREFDFQRFYDLSSYIKSNIGSFSTLNSHHRFTVASILDIHFQHEAKQTFQTFIDVYN
                     EMVKLGYKRDMFTYLSALILLTGKSETTNQKEQMNMGLAVYQQMKKNHYFLTSTQNVP
                     LAVLLGENGKGLQALQKAETCYQLLAANGFKKGQYLHQVSHILALQSEKEPEMLVSAC
                     KQIYQSITESVKKTKDYHYPDLALLTFLEEPDIKTVLCITDELNQEKAFKWQKEMNFK
                     IAVSLYLSEHMEKNLLMESGLYTAIETVIQAQQAAATAAIISSTAASHTHDGN*"
                     /label="yeaA CDS"
     gene            complement(606600..607589)
                     /gene="yeaA"
                     /locus_tag="BSU_06290"
                     /old_locus_tag="BSU06290"
                     /label="yeaA gene"
     promotor_-10    complement(607454..607472)
                     /Source="Nicolas_upshift_promotors"
                     /id="U486"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp=1
                     /psig=1
                     /xcortree=1147
                     /SigmaFactorBS="aattaaaatggaaagtttcacacgatcagATATTAatgctca
                     tttcttctGCATATATTGTGAATAAAAgagagtttgattttcagcgcttttatgattt
                     g"
                     /listShort="ydjP, ydjO, S226"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(607462)
                     /Source="Nicolas_upshifts"
                     /id="U486"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp=1
                     /psig=1
                     /xcortree=1147
                     /SigmaFactorBS="aattaaaatggaaagtttcacacgatcagATATTAatgctca
                     tttcttctGCATATATTGTGAATAAAAgagagtttgattttcagcgcttttatgattt
                     g"
                     /listShort="ydjP, ydjO, S226"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(607488..607493)
                     /Source="Nicolas_upshift_promotors"
                     /id="U486"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp=1
                     /psig=1
                     /xcortree=1147
                     /SigmaFactorBS="aattaaaatggaaagtttcacacgatcagATATTAatgctca
                     tttcttctGCATATATTGTGAATAAAAgagagtttgattttcagcgcttttatgattt
                     g"
                     /listShort="ydjP, ydjO, S226"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    complement(607611..607626)
                     /Source="Nicolas_upshift_promotors"
                     /id="U487"
                     /multdbtbs="SigW"
                     /comp="M9"
                     /sig="SigWXY"
                     /pcomp=1
                     /psig=1
                     /xcortree=1666
                     /SigmaFactorBS="aaataacccgacaaacttgcctctagcaggcaagttttttct
                     ttaTGAAACCTTTggccctatttaTCGTATTACGTAAAAAcaacaaaaggagctgctt
                     t"
                     /listShort="yeaA, ydjP, ydjO, S226, ydzJ"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(607632)
                     /Source="Nicolas_upshifts"
                     /id="U487"
                     /multdbtbs="SigW"
                     /comp="M9"
                     /sig="SigWXY"
                     /pcomp=1
                     /psig=1
                     /xcortree=1666
                     /SigmaFactorBS="aaataacccgacaaacttgcctctagcaggcaagttttttct
                     ttaTGAAACCTTTggccctatttaTCGTATTACGTAAAAAcaacaaaaggagctgctt
                     t"
                     /listShort="yeaA, ydjP, ydjO, S226, ydzJ"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(607638..607647)
                     /Source="Nicolas_upshift_promotors"
                     /id="U487"
                     /multdbtbs="SigW"
                     /comp="M9"
                     /sig="SigWXY"
                     /pcomp=1
                     /psig=1
                     /xcortree=1666
                     /SigmaFactorBS="aaataacccgacaaacttgcctctagcaggcaagttttttct
                     ttaTGAAACCTTTggccctatttaTCGTATTACGTAAAAAcaacaaaaggagctgctt
                     t"
                     /listShort="yeaA, ydjP, ydjO, S226, ydzJ"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             complement(607687..609228)
                     /gene="cotA"
                     /locus_tag="BSU_06300"
                     /old_locus_tag="BSU06300"
                     /EC_number="1.3.3.5"
                     /function="16.6: Maintain"
                     /function="16.8: Protect"
                     /experiment="publication(s) with functional evidences,
                     PMID:11514528, 12637519, 16391148, 17242517, 18031270,
                     19933362, 22112278, 25259857, 27050268"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 11514528, 12637519,
                     16391148, 17242517, 18031270, 19933362, 22112278,
                     25259857, 27050268; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="outer spore coat copper-dependent promiscuous
                     laccase"
                     /protein_id="NP_388511.1"
                     /db_xref="EnsemblGenomes-Gn:BSU06300"
                     /db_xref="EnsemblGenomes-Tr:CAB12449"
                     /db_xref="GOA:P07788"
                     /db_xref="InterPro:IPR001117"
                     /db_xref="InterPro:IPR008972"
                     /db_xref="InterPro:IPR011706"
                     /db_xref="InterPro:IPR011707"
                     /db_xref="PDB:1GSK"
                     /db_xref="PDB:1OF0"
                     /db_xref="PDB:1W6L"
                     /db_xref="PDB:1W6W"
                     /db_xref="PDB:1W8E"
                     /db_xref="PDB:2BHF"
                     /db_xref="PDB:2WSD"
                     /db_xref="PDB:2X87"
                     /db_xref="PDB:2X88"
                     /db_xref="PDB:3ZDW"
                     /db_xref="PDB:4A66"
                     /db_xref="PDB:4A67"
                     /db_xref="PDB:4A68"
                     /db_xref="PDB:4AKO"
                     /db_xref="PDB:4AKP"
                     /db_xref="PDB:4AKQ"
                     /db_xref="PDB:4Q89"
                     /db_xref="PDB:4Q8B"
                     /db_xref="PDB:4YVN"
                     /db_xref="PDB:4YVU"
                     /db_xref="SubtiList:BG10490"
                     /db_xref="UniProtKB/Swiss-Prot:P07788"
                     /translation="MTLEKFVDALPIPDTLKPVQQSKEKTYYEVTMEECTHQLHRDLP
                     PTRLWGYNGLFPGPTIEVKRNENVYVKWMNNLPSTHFLPIDHTIHHSDSQHEEPEVKT
                     VVHLHGGVTPDDSDGYPEAWFSKDFEQTGPYFKREVYHYPNQQRGAILWYHDHAMALT
                     RLNVYAGLVGAYIIHDPKEKRLKLPSDEYDVPLLITDRTINEDGSLFYPSAPENPSPS
                     LPNPSIVPAFCGETILVNGKVWPYLEVEPRKYRFRVINASNTRTYNLSLDNGGDFIQI
                     GSDGGLLPRSVKLNSFSLAPAERYDIIIDFTAYEGESIILANSAGCGGDVNPETDANI
                     MQFRVTKPLAQKDESRKPKYLASYPSVQHERIQNIRTLKLAGTQDEYGRPVLLLNNKR
                     WHDPVTETPKVGTTEIWSIINPTRGTHPIHLHLVSFRVLDRRPFDIARYQESGELSYT
                     GPAVPPPPSEKGWKDTIQAHAGEVLRIAATFGPYSGRYVWHCHILEHEDYDMMRPMDI
                     TDPHK*"
                     /label="cotA CDS"
     gene            complement(607687..609228)
                     /gene="cotA"
                     /locus_tag="BSU_06300"
                     /old_locus_tag="BSU06300"
                     /label="cotA gene"
     downshifts      complement(607700)
                     /Source="Nicolas_upshifts"
                     /id="D308"
                     /incds=0
                     /nref=46
                     /ntot=93
                     /MaxReadThrough="2.97674"
                     /MaxDrop="5.60726"
                     /score="22.3755425"
                     /energy="-9.1"
                     /TU="U488"
                     /idTUdmin="U488"
                     /TUdmin="-66"
                     /isTUend="FALSE"
                     /label="downshifts"
     promotor_-10    complement(609259..609278)
                     /Source="Nicolas_upshift_promotors"
                     /id="U488"
                     /multdbtbs="SigK"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp="0.994005994005994"
                     /psig="0.994005994005994"
                     /xcortree=1297
                     /SigmaFactorBS="tcttcttcgggcgggctgcagcacgaagatttTTTGTAACCA
                     tcacgtccttattGTCATTAACTATAGTACCAAtttggaaaatttagataaggacaga
                     t"
                     /listShort="cotA"
                     /listLong="yeaA, ydjP, ydjO, S226"
                     /label="promotor_-10"
     upshifts        complement(609273)
                     /Source="Nicolas_upshifts"
                     /id="U488"
                     /multdbtbs="SigK"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp="0.994005994005994"
                     /psig="0.994005994005994"
                     /xcortree=1297
                     /SigmaFactorBS="tcttcttcgggcgggctgcagcacgaagatttTTTGTAACCA
                     tcacgtccttattGTCATTAACTATAGTACCAAtttggaaaatttagataaggacaga
                     t"
                     /listShort="cotA"
                     /listLong="yeaA, ydjP, ydjO, S226"
                     /label="upshifts"
     promotor_-35    complement(609292..609301)
                     /Source="Nicolas_upshift_promotors"
                     /id="U488"
                     /multdbtbs="SigK"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp="0.994005994005994"
                     /psig="0.994005994005994"
                     /xcortree=1297
                     /SigmaFactorBS="tcttcttcgggcgggctgcagcacgaagatttTTTGTAACCA
                     tcacgtccttattGTCATTAACTATAGTACCAAtttggaaaatttagataaggacaga
                     t"
                     /listShort="cotA"
                     /listLong="yeaA, ydjP, ydjO, S226"
                     /label="promotor_-35"
     CDS             complement(609380..610789)
                     /gene="gabP"
                     /locus_tag="BSU_06310"
                     /old_locus_tag="BSU06310"
                     /function="16.1: Circulate"
                     /function="16.8: Protect"
                     /experiment="publication(s) with functional evidences,
                     PMID:15849754, 16547045, 16850406, 8951816, 9677314,
                     24142252"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 15849754, 16547045,
                     16850406, 8951816, 9677314, 24142252; Product type t :
                     transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="gamma-aminobutyrate (GABA) permease; proline
                     permease"
                     /protein_id="NP_388512.2"
                     /db_xref="EnsemblGenomes-Gn:BSU06310"
                     /db_xref="EnsemblGenomes-Tr:CAB12450"
                     /db_xref="GOA:P46349"
                     /db_xref="InterPro:IPR002293"
                     /db_xref="InterPro:IPR004840"
                     /db_xref="InterPro:IPR004841"
                     /db_xref="InterPro:IPR011265"
                     /db_xref="SubtiList:BG11328"
                     /db_xref="UniProtKB/Swiss-Prot:P46349"
                     /translation="MNQSQSGLKKELKTRHMTMISIAGVIGAGLFVGSGSVIHSTGPG
                     AVVSYALAGLLVIFIMRMLGEMSAVNPTSGSFSQYAHDAIGPWAGFTIGWLYWFFWVI
                     VIAIEAIAGAGIIQYWFHDIPLWLTSLILTIVLTLTNVYSVKSFGEFEYWFSLIKVVT
                     IIAFLIVGFAFIFGFAPGSEPVGFSNLTGKGGFFPEGISSVLLGIVVVIFSFMGTEIV
                     AIAAGETSNPIESVTKATRSVVWRIIVFYVGSIAIVVALLPWNSANILESPFVAVLEH
                     IGVPAAAQIMNFIVLTAVLSCLNSGLYTTSRMLYSLAERNEAPRRFMKLSKKGVPVQA
                     IVAGTFFSYIAVVMNYFSPDTVFLFLVNSSGAIALLVYLVIAVSQLKMRKKLEKTNPE
                     ALKIKMWLFPFLTYLTIIAICGILVSMAFIDSMRDELLLTGVITGIVLISYLVFRKRK
                     VSEKAAANPVTQQQPDILP*"
                     /label="gabP CDS"
     gene            complement(609380..610789)
                     /gene="gabP"
                     /locus_tag="BSU_06310"
                     /old_locus_tag="BSU06310"
                     /label="gabP gene"
     downshifts      complement(609394)
                     /Source="Nicolas_upshifts"
                     /id="D309"
                     /incds=0
                     /nref=124
                     /ntot=216
                     /MaxReadThrough="3.22899"
                     /MaxDrop="5.0359"
                     /score="18.985683"
                     /energy="-13.5"
                     /TU="U489"
                     /idTUdmin="U489"
                     /TUdmin="-110"
                     /isTUend="FALSE"
                     /label="downshifts"
     CDS             complement(610827..611114)
                     /gene="ydzX"
                     /locus_tag="BSU_06319"
                     /old_locus_tag="BSU06319"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 5: Unknown function"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_003097690.1"
                     /db_xref="EnsemblGenomes-Gn:BSU06319"
                     /db_xref="EnsemblGenomes-Tr:CAX52577"
                     /db_xref="UniProtKB/Swiss-Prot:C0H3X2"
                     /translation="MIHPPQKNSDEGTLFLSSNLFAPPKIPSNPRTPVLLAFYRIVNI
                     TQNHTANKKRNIFSTHSLKAQTKHYKFEISWYIFLHEFSTNCIFMIEFQLS*"
                     /label="ydzX CDS"
     gene            complement(610827..611114)
                     /gene="ydzX"
                     /locus_tag="BSU_06319"
                     /old_locus_tag="BSU06319"
                     /label="ydzX gene"
     misc_feature    complement(610830..610849)
                     /Source="Nicolas_upshift_promotors"
                     /id="U489"
                     /multdbtbs="SigA,SigA"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.447552447552448"
                     /psig="0.996003996003996"
                     /xcortree=2898
                     /SigmaFactorBS="tttgaaataagctggtatattttcttacacgaattttcgaca
                     aactgtatatttaTGATAGAGTTTCAATTATCAtaatattcagtaatgattgcatttt
                     a"
                     /listShort="gabP"
                     /listLong="cotA"
                     /label="promotor_single_box"
                     /note="Geneious type: promotor_single_box"
     upshifts        complement(610844)
                     /Source="Nicolas_upshifts"
                     /id="U489"
                     /multdbtbs="SigA,SigA"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.447552447552448"
                     /psig="0.996003996003996"
                     /xcortree=2898
                     /SigmaFactorBS="tttgaaataagctggtatattttcttacacgaattttcgaca
                     aactgtatatttaTGATAGAGTTTCAATTATCAtaatattcagtaatgattgcatttt
                     a"
                     /listShort="gabP"
                     /listLong="cotA"
                     /label="upshifts"
     promotor_-35    611120..611127
                     /Source="Nicolas_upshift_promotors"
                     /id="U490"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.748251748251748"
                     /psig="0.999000999001"
                     /xcortree=1749
                     /SigmaFactorBS="cgtcactatttttctgtggcgggtgaatcatgtttcTGTAGA
                     CCcactgcggatcagctTTGTAAGATAATAATAGGAAaatgtgagcgagaggaggttt
                     t"
                     /listShort="yeaB"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    611143..611162
                     /Source="Nicolas_upshift_promotors"
                     /id="U490"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.748251748251748"
                     /psig="0.999000999001"
                     /xcortree=1749
                     /SigmaFactorBS="cgtcactatttttctgtggcgggtgaatcatgtttcTGTAGA
                     CCcactgcggatcagctTTGTAAGATAATAATAGGAAaatgtgagcgagaggaggttt
                     t"
                     /listShort="yeaB"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        611144
                     /Source="Nicolas_upshifts"
                     /id="U490"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.748251748251748"
                     /psig="0.999000999001"
                     /xcortree=1749
                     /SigmaFactorBS="cgtcactatttttctgtggcgggtgaatcatgtttcTGTAGA
                     CCcactgcggatcagctTTGTAAGATAATAATAGGAAaatgtgagcgagaggaggttt
                     t"
                     /listShort="yeaB"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             611187..612059
                     /gene="mneS"
                     /locus_tag="BSU_06320"
                     /old_locus_tag="BSU06320"
                     /function="16.1: Circulate"
                     /experiment="publication(s) with functional evidences,
                     PMID:27748968"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 27748968; Product type t:
                     transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="secondary Mn(II) exporter, promiscuous"
                     /protein_id="NP_388513.1"
                     /db_xref="EnsemblGenomes-Gn:BSU06320"
                     /db_xref="EnsemblGenomes-Tr:CAB12451"
                     /db_xref="GOA:P46348"
                     /db_xref="InterPro:IPR002524"
                     /db_xref="InterPro:IPR027469"
                     /db_xref="InterPro:IPR027470"
                     /db_xref="InterPro:IPR036837"
                     /db_xref="SubtiList:BG11329"
                     /db_xref="UniProtKB/Swiss-Prot:P46348"
                     /translation="MERYDELKKGESGALVSIAAYLVLSAIKLIIGYLFHSEALTADG
                     LNNTTDIIASVAVLIGLRISQKPPDEDHPYGHFRAETIASLIASFIMMVVGLQVLFSA
                     GESIFSAKQETPDMIAAWTAAGGAVLMLIVYRYNKRLAKKVKSQALLAAAADNKSDAF
                     VSIGTFIGIVAAQFHLAWIDTVTAFVIGLLICKTAWDIFKESSHSLTDGFDIKDISAY
                     KQTIEKISGVSRLKDIKARYLGSTVHVDVVVEVSADLNITESHDIANEIERRMKEEHA
                     IDYSHVHMEPLEQK*"
                     /label="mneS CDS"
     gene            611187..612059
                     /gene="mneS"
                     /locus_tag="BSU_06320"
                     /old_locus_tag="BSU06320"
                     /label="mneS gene"
     downshifts      612024
                     /Source="Nicolas_upshifts"
                     /id="D310"
                     /incds=0
                     /nref=2
                     /ntot=88
                     /MaxReadThrough="1.72291"
                     /MaxDrop="2.86431"
                     /score="24.8167732"
                     /energy="-10.2"
                     /TU="U490"
                     /idTUdmin="U490"
                     /TUdmin="-22"
                     /isTUend="TRUE"
                     /label="downshifts"
     downshifts      complement(612299)
                     /Source="Nicolas_upshifts"
                     /id="D311"
                     /incds=0
                     /nref=1
                     /ntot=3
                     /MaxReadThrough="0.65827"
                     /MaxDrop="3.33542"
                     /score="-0.424989042"
                     /energy="-12.9"
                     /TU="NA"
                     /idTUdmin="U489"
                     /TUdmin="-3015"
                     /isTUend="FALSE"
                     /label="downshifts"
     misc_feature    612353..612372
                     /Source="Nicolas_upshift_promotors"
                     /id="U491"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.932067932067932"
                     /psig=1
                     /xcortree=2248
                     /SigmaFactorBS="ctttattggtaacaatttgctagaatcgtttttttatacaga
                     ttgcttttTGTGGTAAAGTTAGGTTACAttatgatgaattttgtagatgactaggagg
                     a"
                     /listShort="yeaC, yeaD, yebA"
                     /listLong="S227, guaA"
                     /label="promotor_single_box"
                     /note="Geneious type: promotor_single_box"
     upshifts        612363
                     /Source="Nicolas_upshifts"
                     /id="U491"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.932067932067932"
                     /psig=1
                     /xcortree=2248
                     /SigmaFactorBS="ctttattggtaacaatttgctagaatcgtttttttatacaga
                     ttgcttttTGTGGTAAAGTTAGGTTACAttatgatgaattttgtagatgactaggagg
                     a"
                     /listShort="yeaC, yeaD, yebA"
                     /listLong="S227, guaA"
                     /label="upshifts"
     CDS             612409..613371
                     /gene="yeaC"
                     /locus_tag="BSU_06330"
                     /old_locus_tag="BSU06330"
                     /function="16.6: Maintain"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 21907250, 26933057;
                     Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative MoxR-like ATPase"
                     /protein_id="NP_388514.2"
                     /db_xref="EnsemblGenomes-Gn:BSU06330"
                     /db_xref="EnsemblGenomes-Tr:CAB12452"
                     /db_xref="GOA:P94474"
                     /db_xref="InterPro:IPR011703"
                     /db_xref="InterPro:IPR027417"
                     /db_xref="SubtiList:BG12211"
                     /db_xref="UniProtKB/Swiss-Prot:P94474"
                     /translation="MAYQEDLHPLLGKAVEHINRVMVGKRDIAILSLAALLAKGHVLL
                     EDVPGVGKTMMVRALAKSIGADFKRIQFTPDLLPSDVTGVSIYNAKTMEFEYRPGPIM
                     GNIVLADEINRTSPKTQSALLEAMEEGSVTVDGHTMQLADPFFVMATQNPVEYEGTYP
                     LPEAQLDRFLFKLRMGYPSFNEELDVLSLQEKSHPIETLEPVIAKEDFIFLQREVQNV
                     RADDSIKEYIVEIVQKTRQHPSVQLGVSPRGSIALMKAAQAYALLHHRDYVIPDDIQY
                     LAPFTLPHRMMLHPEAKFEGIQAEAIVREIMSAVKVPVQRSAVR*"
                     /label="yeaC CDS"
     gene            612409..613371
                     /gene="yeaC"
                     /locus_tag="BSU_06330"
                     /old_locus_tag="BSU06330"
                     /label="yeaC gene"
     CDS             613371..614567
                     /gene="yeaD"
                     /locus_tag="BSU_06340"
                     /old_locus_tag="BSU06340"
                     /function="18: Unknown function"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved hypothetical protein"
                     /protein_id="NP_388515.2"
                     /db_xref="EnsemblGenomes-Gn:BSU06340"
                     /db_xref="EnsemblGenomes-Tr:CAB12453"
                     /db_xref="InterPro:IPR002881"
                     /db_xref="InterPro:IPR036465"
                     /db_xref="SubtiList:BG12212"
                     /db_xref="UniProtKB/Swiss-Prot:P94475"
                     /translation="MNKKWQWLVYGWKLIILTLLTAAVFSYAMFQGGFVSWFLFYAFL
                     PFVLYAGLLALYPLRSFQASRQMDKTQLHAGDRLGVTVTLRRKLPFPLMYMVIEDCLP
                     EGIESLNRDGAAAKRLVFPWFKRSMTMSYELARVPRGEHHFHSVRVRTGDVLGLIEKT
                     AFFELDDTLFVYPFYQRFSYQVNERHQEDGVSGSSPIHQHHSSVAASVRNYQPGDRFA
                     ALDWKTSARRSQLMTKEFEPSRSKNLFLLMDRFSSDAFEEVVSVTASILHSVLKNGAG
                     AGLASIGKEKNIFPIQEGDQHFKHMLRHLAIAHCDAADPISRYAREELGKPSVRQADQ
                     VVVTGQLTEDMLHLAEIGGGRVTVILAKEKDAELSQAENVMIERMMKRQIRVRIMRGG
                     RVSRVV*"
                     /label="yeaD CDS"
     gene            613371..614567
                     /gene="yeaD"
                     /locus_tag="BSU_06340"
                     /old_locus_tag="BSU06340"
                     /label="yeaD gene"
     CDS             614589..616802
                     /gene="yebA"
                     /locus_tag="BSU_06350"
                     /old_locus_tag="BSU06350"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved hypothetical protein"
                     /protein_id="NP_388516.2"
                     /db_xref="EnsemblGenomes-Gn:BSU06350"
                     /db_xref="EnsemblGenomes-Tr:CAB12454"
                     /db_xref="GOA:P94476"
                     /db_xref="InterPro:IPR002931"
                     /db_xref="InterPro:IPR025403"
                     /db_xref="InterPro:IPR036985"
                     /db_xref="SubtiList:BG12213"
                     /db_xref="UniProtKB/Swiss-Prot:P94476"
                     /translation="MPHDDHKGSRLSLLLFYFLAFLLLWEWLRPLDSFTETKHTGFFS
                     VFIGLTFLLTFFRMRWFVTVPFCVIFTLISIHILFYQGSIFDLSWVSSFLQDVYLNIT
                     LIQSGQWNDMIPSFRTLLFFVLLWLLVYLLHYWVIYQRRILFFFLMTVAYITILDTFT
                     PYDATFAVIRIVLIGFFMLGLLYLERIKLMERITLPKTSVLKWFLPLSVLVLAATGFG
                     LAAPKSEPAWPDPVPFLKKITHQDRVSAGESKIGYGNHDESLGGPFQQDATPVFTWQG
                     KERTYFRVETKDTYTGKGWIETDTGMSYQLSNGKVENLWFDHKVATERRTVRVKVDKH
                     YGYNHLMYPIGAETIQPKQAVSLEMNGNTEQISPISEQAGEIRNMGNYTVTYNSPVYK
                     LDELRKVKVRKNSEEYTFSDRYMQLPDSLPERVRTLAIKLTQDHDNMFDKVKAVEDYL
                     GSNAFTYETENVTIPKNDEDYVDQFLFETKMGYCDNFSSAMVVLLRSAGIPARWVKGY
                     TSGEYKEAGNKNGSIYEVTNNNAHSWVEVYFPEQGWVTFEPTKGFTNPAQFTSSDTKD
                     SGSDSSSSPKKAKEKQKEEKKQPQKEEKQKEKREPAVSKKPSASHTNAGAGLYAALAV
                     LAVLLVAAVLLYVFRSLWIPVFAVRKLKRRSDQHAFFEAYGALLKQLKRKGLPKRDSE
                     TLRDYAKRIDEKYDIEDMSKLTLSYERALYRNEDSSALWNDSRELWENLIKRRWS*"
                     /label="yebA CDS"
     gene            614589..616802
                     /gene="yebA"
                     /locus_tag="BSU_06350"
                     /old_locus_tag="BSU06350"
                     /label="yebA gene"
     promotor_-35    616797..616804
                     /Source="Nicolas_upshift_promotors"
                     /id="U492"
                     /multdbtbs="SigA"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.912087912087912"
                     /psig="0.999000999001"
                     /xcortree=2555
                     /SigmaFactorBS="aaatttaattaaaagaagatggTCTTGACCgcttatcgacgt
                     gtTGTTAGAATTAGTGAATATTatcggagtctgggagcgagttggcctgactccggca
                     a"
                     /listShort="S227, guaA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    616819..616838
                     /Source="Nicolas_upshift_promotors"
                     /id="U492"
                     /multdbtbs="SigA"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.912087912087912"
                     /psig="0.999000999001"
                     /xcortree=2555
                     /SigmaFactorBS="aaatttaattaaaagaagatggTCTTGACCgcttatcgacgt
                     gtTGTTAGAATTAGTGAATATTatcggagtctgggagcgagttggcctgactccggca
                     a"
                     /listShort="S227, guaA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     S_feature       616835..616964
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_692610_692739"
                     /HighExp="G180, Oxctl, G135, LBGexp, G150, Paraq, C30,
                     LPh, MG 25, C90"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="0.63292099999999996"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.999"
                     /TUlongSig="SigA"
                     /TUlongPSig=1
                     /label="S227"
     upshifts        616835
                     /Source="Nicolas_upshifts"
                     /id="U492"
                     /multdbtbs="SigA"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.912087912087912"
                     /psig="0.999000999001"
                     /xcortree=2555
                     /SigmaFactorBS="aaatttaattaaaagaagatggTCTTGACCgcttatcgacgt
                     gtTGTTAGAATTAGTGAATATTatcggagtctgggagcgagttggcctgactccggca
                     a"
                     /listShort="S227, guaA"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             616965..618506
                     /gene="guaA"
                     /locus_tag="BSU_06360"
                     /old_locus_tag="BSU06360"
                     /EC_number="6.3.5.2"
                     /function="16.2: Construct biomass (Anabolism)"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 2a: Function from experimental evidences
                     in other organisms; PubMedId: 1312531, 21856856; Product
                     type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="GMP synthetase"
                     /protein_id="NP_388517.2"
                     /db_xref="EnsemblGenomes-Gn:BSU06360"
                     /db_xref="EnsemblGenomes-Tr:CAB12455"
                     /db_xref="GOA:P29727"
                     /db_xref="InterPro:IPR001674"
                     /db_xref="InterPro:IPR004739"
                     /db_xref="InterPro:IPR014729"
                     /db_xref="InterPro:IPR017926"
                     /db_xref="InterPro:IPR022310"
                     /db_xref="InterPro:IPR022955"
                     /db_xref="InterPro:IPR025777"
                     /db_xref="InterPro:IPR029062"
                     /db_xref="SubtiList:BG10647"
                     /db_xref="UniProtKB/Swiss-Prot:P29727"
                     /translation="MTKLVNEMILVLDFGSQYNQLITRRIREFGVYSELHPHTLTAEE
                     IKKMNPKGIILSGGPNSVYDENSFRCDEKIFELDIPVLGICYGMQLMTHYLGGKVEAA
                     SQREYGKANIRIEGTPDLFRDLPNEQVVWMSHGDLVVEVPEGFTVDATSHHCPNSAMS
                     KADKKWYGVQFHPEVRHSEYGNDLLKNFVFGVCECEGEWSMENFIEIEMQKIRETVGD
                     KQVLCALSGGVDSSVVAVLIHKAIGDQLTCIFVDHGLLRKGEAEGVMKTFSEGFNMNV
                     IKVDAKDRFLNKLKGVSDPEQKRKIIGNEFIYVFDDEADKLKGIDYLAQGTLYTDIIE
                     SGTATAQTIKSHHNVGGLPEDMQFELIEPLNTLFKDEVRALGTELGIPDEIVWRQPFP
                     GPGLGIRVLGEVTEEKLEIVRESDAILREEIANHGLERDIWQYFTVLPDIRSVGVMGD
                     ARTYDYTIGIRAVTSIDGMTSDWARIPWDVLEVISTRIVNEVKHINRVVYDITSKPPA
                     TIEWE*"
                     /label="guaA CDS"
     gene            616965..618506
                     /gene="guaA"
                     /locus_tag="BSU_06360"
                     /old_locus_tag="BSU06360"
                     /label="guaA gene"
     downshifts      618492
                     /Source="Nicolas_upshifts"
                     /id="D312"
                     /incds=0
                     /nref=247
                     /ntot=268
                     /MaxReadThrough="2.12151"
                     /MaxDrop="7.3702"
                     /score="22.5795134"
                     /energy="-18.5"
                     /TU="NA"
                     /idTUdmin="U492"
                     /TUdmin=0
                     /isTUend="TRUE"
                     /label="downshifts"
     promotor_-35    618613..618617
                     /Source="Nicolas_upshift_promotors"
                     /id="U493"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.767232767232767"
                     /psig=1
                     /xcortree=2631
                     /SigmaFactorBS="cgattttgcgcgactattgttcgctttttgTATTGttttttc
                     aaaatgaaCTTGGTACAATAGACACAGAaatcaaataagatgaattcgtataatcgcg
                     g"
                     /listShort="NA, pbuG"
                     /listLong="S228, yebC"
                     /label="promotor_-35"
     promotor_-10    618633..618652
                     /Source="Nicolas_upshift_promotors"
                     /id="U493"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.767232767232767"
                     /psig=1
                     /xcortree=2631
                     /SigmaFactorBS="cgattttgcgcgactattgttcgctttttgTATTGttttttc
                     aaaatgaaCTTGGTACAATAGACACAGAaatcaaataagatgaattcgtataatcgcg
                     g"
                     /listShort="NA, pbuG"
                     /listLong="S228, yebC"
                     /label="promotor_-10"
     upshifts        618643
                     /Source="Nicolas_upshifts"
                     /id="U493"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.767232767232767"
                     /psig=1
                     /xcortree=2631
                     /SigmaFactorBS="cgattttgcgcgactattgttcgctttttgTATTGttttttc
                     aaaatgaaCTTGGTACAATAGACACAGAaatcaaataagatgaattcgtataatcgcg
                     g"
                     /listShort="NA, pbuG"
                     /listLong="S228, yebC"
                     /label="upshifts"
     misc_RNA        618650..618752
                     /gene="gswC"
                     /locus_tag="BSU_misc_RNA_9"
                     /product="guanine riboswitch"
                     /experiment="publication(s) with functional evidences,
                     PMID:12787499, 15549109, 18072940, 19603494, 20022916,
                     20200045, 20204714, 21439477, 25023436, 27941758"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 12787499, 15549109,
                     18072940, 19603494, 20022916, 20200045, 20204714,
                     21439477, 25023436, 27941758; Product type n: RNA"
                     /label="gswC RNA"
     gene            618650..618752
                     /gene="gswC"
                     /locus_tag="BSU_misc_RNA_9"
                     /label="gswC gene"
     downshifts      618778
                     /Source="Nicolas_upshifts"
                     /id="D313"
                     /incds=0
                     /nref=11
                     /ntot=56
                     /MaxReadThrough="8.01916"
                     /MaxDrop="4.7859"
                     /score="24.3821572"
                     /energy="-11.3"
                     /TU="U493"
                     /idTUdmin="U492"
                     /TUdmin=286
                     /isTUend="FALSE"
                     /label="downshifts"
     CDS             618887..620209
                     /gene="pbuG"
                     /locus_tag="BSU_06370"
                     /old_locus_tag="BSU06370"
                     /function="16.1: Circulate"
                     /experiment="publication(s) with functional evidences,
                     PMID:3110131, 11591660, 12923093, 15849754, 16850406,
                     19446032"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 3110131, 11591660,
                     12923093, 15849754, 16850406, 19446032; Product type t :
                     transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="hypoxanthine/guanine permease"
                     /protein_id="NP_388518.1"
                     /db_xref="EnsemblGenomes-Gn:BSU06370"
                     /db_xref="EnsemblGenomes-Tr:CAB12456"
                     /db_xref="GOA:O34987"
                     /db_xref="InterPro:IPR006043"
                     /db_xref="InterPro:IPR026033"
                     /db_xref="SubtiList:BG12811"
                     /db_xref="UniProtKB/Swiss-Prot:O34987"
                     /translation="MKTFFQFDELGTSYRNEIIGGLTTFLSMAYILFVNPITLALESV
                     KDFPEALRIDQGAVFTATALASAAGCILMGLIARYPIAIAPGMGLNAFFAFSVVLGMG
                     ISWQAALSGVFISGLIFVALSLTGFREKIINAIPPELKLAVGAGIGLFITFVGLQGSG
                     IITANPSTLVTIGNIHSGPVLLTIFGVIVTVILMVLRVNAGVFIGMLLTAVAGMIFGL
                     VPVPTQIIGSVPSLAPTFGQAWIHLPDIFSVQMLIVILTFLFVGFFDTAGTLVAVATQ
                     AGLMKENKLPRAGRALLADSSSIVIGAVLGTSTTTSYVESSSGVAAGARSGFAAIVTG
                     ILFLLATFFSPLLSVVTSNVTAPALIIVGALMVAPLGKIAWDKFEVAVPAFLTMIMMP
                     LTYSIATGIAIGFIFYPITMVCKGKAKEVHPIMYGLFVVFILYFIFLK*"
                     /label="pbuG CDS"
     gene            618887..620209
                     /gene="pbuG"
                     /locus_tag="BSU_06370"
                     /old_locus_tag="BSU06370"
                     /label="pbuG gene"
     downshifts      620187
                     /Source="Nicolas_upshifts"
                     /id="D314"
                     /incds=0
                     /nref=47
                     /ntot=153
                     /MaxReadThrough="4.18958"
                     /MaxDrop="4.86237"
                     /score="42.0241443"
                     /energy="-13.4"
                     /TU="U493"
                     /idTUdmin="U493"
                     /TUdmin="-86"
                     /isTUend="FALSE"
                     /label="downshifts"
     downshifts      620230
                     /Source="Nicolas_upshifts"
                     /id="D315"
                     /incds=0
                     /nref=1
                     /ntot=29
                     /MaxReadThrough="3.09696"
                     /MaxDrop="3.87785"
                     /score="42.0241443"
                     /energy="-13.4"
                     /TU="U493"
                     /idTUdmin="U493"
                     /TUdmin="-43"
                     /isTUend="FALSE"
                     /label="downshifts"
     promotor_-35    620259..620268
                     /Source="Nicolas_upshift_promotors"
                     /id="U494"
                     /multdbtbs="-"
                     /comp="M9"
                     /sig="SigWXY"
                     /pcomp="0.998001998001998"
                     /psig="0.998001998001998"
                     /xcortree=1642
                     /SigmaFactorBS="aaccagctgcactggcagctggtttttttgttgcaaaagaTA
                     AAACCATTtcatacgatataCCGTCATGTAGATGTGccgccatgctttacttaaatgg
                     a"
                     /listShort="S228, yebC"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     S_feature       620279..620419
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_696054_696194"
                     /HighExp="T1.30H, T1.0H, T2.0H, T0.30H, B60, T2.30H,
                     T-0.40H, T0.0H, T3.0H, T-1.10H"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigWXY"
                     /TUshortPSig="0.998"
                     /TUlongSig="SigA"
                     /TUlongPSig=1
                     /label="S228"
     upshifts        620279
                     /Source="Nicolas_upshifts"
                     /id="U494"
                     /multdbtbs="-"
                     /comp="M9"
                     /sig="SigWXY"
                     /pcomp="0.998001998001998"
                     /psig="0.998001998001998"
                     /xcortree=1642
                     /SigmaFactorBS="aaccagctgcactggcagctggtttttttgttgcaaaagaTA
                     AAACCATTtcatacgatataCCGTCATGTAGATGTGccgccatgctttacttaaatgg
                     a"
                     /listShort="S228, yebC"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-10    620281..620296
                     /Source="Nicolas_upshift_promotors"
                     /id="U494"
                     /multdbtbs="-"
                     /comp="M9"
                     /sig="SigWXY"
                     /pcomp="0.998001998001998"
                     /psig="0.998001998001998"
                     /xcortree=1642
                     /SigmaFactorBS="aaccagctgcactggcagctggtttttttgttgcaaaagaTA
                     AAACCATTtcatacgatataCCGTCATGTAGATGTGccgccatgctttacttaaatgg
                     a"
                     /listShort="S228, yebC"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     CDS             620420..621223
                     /gene="yebC"
                     /locus_tag="BSU_06380"
                     /old_locus_tag="BSU06380"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 15849754, 16850406,
                     22720735; Product type m: membrane component"
                     /codon_start=1
                     /transl_table=11
                     /product="putative integral inner membrane protein"
                     /protein_id="NP_388519.2"
                     /db_xref="EnsemblGenomes-Gn:BSU06380"
                     /db_xref="EnsemblGenomes-Tr:CAB12457"
                     /db_xref="GOA:O34341"
                     /db_xref="SubtiList:BG12812"
                     /db_xref="UniProtKB/Swiss-Prot:O34341"
                     /translation="MTEERKETFEEEINQSERIDADEEPLSRMSRKASRQSKQKQKQK
                     QKPRQERGESTVKDKLASVWAAINRYCGFAFSILKSPAKTVVTDGFSHYKYGLISMLI
                     FSIIFSIGNWFQLKASWNRPLGFGERHHAFYDGFLVVLVYLLIFFAVMVFAIWAVSRY
                     MMKQKVTFREAAAVLGSLLVPVIAVSILWLIFAIVNIPMLTVLFTVLILFSIFFIIAL
                     YVQRVYQAAQDAPIDYIYCVFAVVAIALLFTAVTWPFISEYITASLIPL*"
                     /label="yebC CDS"
     gene            620420..621223
                     /gene="yebC"
                     /locus_tag="BSU_06380"
                     /old_locus_tag="BSU06380"
                     /label="yebC gene"
     downshifts      621208
                     /Source="Nicolas_upshifts"
                     /id="D316"
                     /incds=0
                     /nref=218
                     /ntot=263
                     /MaxReadThrough="1.47691"
                     /MaxDrop="7.03926"
                     /score="33.0377004"
                     /energy="-10.7"
                     /TU="NA"
                     /idTUdmin="U494"
                     /TUdmin=0
                     /isTUend="TRUE"
                     /label="downshifts"
     promotor_-35    621291..621298
                     /Source="Nicolas_upshift_promotors"
                     /id="U495"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.524475524475524"
                     /psig=1
                     /xcortree=527
                     /SigmaFactorBS="tgtcacactttttacaaatatatctaaaaaacaTAGTTGATt
                     tgtaggattaacCCGTGTATGATGGGGAAAATgctgaaaacgtccagcgcaaaaacct
                     t"
                     /listShort="S229, yebD"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    621312..621331
                     /Source="Nicolas_upshift_promotors"
                     /id="U495"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.524475524475524"
                     /psig=1
                     /xcortree=527
                     /SigmaFactorBS="tgtcacactttttacaaatatatctaaaaaacaTAGTTGATt
                     tgtaggattaacCCGTGTATGATGGGGAAAATgctgaaaacgtccagcgcaaaaacct
                     t"
                     /listShort="S229, yebD"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     S_feature       621318..621381
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_697093_697156"
                     /HighExp="B60, S2, S7, S8, Lbstat, nit, S4, BC, BT, M0t90"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig=1
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S229"
     upshifts        621318
                     /Source="Nicolas_upshifts"
                     /id="U495"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.524475524475524"
                     /psig=1
                     /xcortree=527
                     /SigmaFactorBS="tgtcacactttttacaaatatatctaaaaaacaTAGTTGATt
                     tgtaggattaacCCGTGTATGATGGGGAAAATgctgaaaacgtccagcgcaaaaacct
                     t"
                     /listShort="S229, yebD"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             621382..621549
                     /gene="yebD"
                     /locus_tag="BSU_06390"
                     /old_locus_tag="BSU06390"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 5: Unknown function"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="NP_388520.3"
                     /db_xref="EnsemblGenomes-Gn:BSU06390"
                     /db_xref="EnsemblGenomes-Tr:CAB12458"
                     /db_xref="InterPro:IPR025072"
                     /db_xref="SubtiList:BG12813"
                     /db_xref="UniProtKB/Swiss-Prot:O34904"
                     /translation="MADVLRRAINQKKQFLKTKLLLSEFYQGRGEQLADYTLSELEKE
                     YKSLQKMKKEI*"
                     /label="yebD CDS"
     gene            621382..621549
                     /gene="yebD"
                     /locus_tag="BSU_06390"
                     /old_locus_tag="BSU06390"
                     /label="yebD gene"
     downshifts      621556
                     /Source="Nicolas_upshifts"
                     /id="D317"
                     /incds=0
                     /nref=64
                     /ntot=163
                     /MaxReadThrough="2.85884"
                     /MaxDrop="5.66286"
                     /score="29.2645456"
                     /energy="-9"
                     /TU="NA"
                     /idTUdmin="U495"
                     /TUdmin="-2"
                     /isTUend="TRUE"
                     /label="downshifts"
     promotor_-35    621600..621606
                     /Source="Nicolas_upshift_promotors"
                     /id="U496"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp="0.966033966033966"
                     /psig="0.966033966033966"
                     /xcortree=744
                     /SigmaFactorBS="aggtgagtctgctgaaaagcgggcttttttgttttgATTTTG
                     AaaaggcgagaaagaGGGTAAACTACTACTGTTCaacacataaaagcgtgtcgaaata
                     t"
                     /listShort="S230, yebE, yebG, NA, S231"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    621621..621639
                     /Source="Nicolas_upshift_promotors"
                     /id="U496"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp="0.966033966033966"
                     /psig="0.966033966033966"
                     /xcortree=744
                     /SigmaFactorBS="aggtgagtctgctgaaaagcgggcttttttgttttgATTTTG
                     AaaaggcgagaaagaGGGTAAACTACTACTGTTCaacacataaaagcgtgtcgaaata
                     t"
                     /listShort="S230, yebE, yebG, NA, S231"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     S_feature       621624..621710
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_697399_697485"
                     /HighExp="Etha, Gly, M9-stat, Sw, B60, S4, S6, LPhT, S3,
                     S8"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigB"
                     /TUshortPSig="0.966"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S230"
     upshifts        621624
                     /Source="Nicolas_upshifts"
                     /id="U496"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp="0.966033966033966"
                     /psig="0.966033966033966"
                     /xcortree=744
                     /SigmaFactorBS="aggtgagtctgctgaaaagcgggcttttttgttttgATTTTG
                     AaaaggcgagaaagaGGGTAAACTACTACTGTTCaacacataaaagcgtgtcgaaata
                     t"
                     /listShort="S230, yebE, yebG, NA, S231"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    621689..621696
                     /Source="Nicolas_upshift_promotors"
                     /id="U497"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.876123876123876"
                     /psig="0.999000999001"
                     /xcortree=2463
                     /SigmaFactorBS="cgtgtcgaaatattttgcttaagcttacgggcgaagcTGATT
                     GTAaacggctcatttcTCTAGTAGAATATGAATGCTttgtgcaagctgaagagtaggg
                     g"
                     /listShort="yebE, yebG"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    621710..621729
                     /Source="Nicolas_upshift_promotors"
                     /id="U497"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.876123876123876"
                     /psig="0.999000999001"
                     /xcortree=2463
                     /SigmaFactorBS="cgtgtcgaaatattttgcttaagcttacgggcgaagcTGATT
                     GTAaacggctcatttcTCTAGTAGAATATGAATGCTttgtgcaagctgaagagtaggg
                     g"
                     /listShort="yebE, yebG"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        621712
                     /Source="Nicolas_upshifts"
                     /id="U497"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.876123876123876"
                     /psig="0.999000999001"
                     /xcortree=2463
                     /SigmaFactorBS="cgtgtcgaaatattttgcttaagcttacgggcgaagcTGATT
                     GTAaacggctcatttcTCTAGTAGAATATGAATGCTttgtgcaagctgaagagtaggg
                     g"
                     /listShort="yebE, yebG"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             621763..622317
                     /gene="yebE"
                     /locus_tag="BSU_06400"
                     /old_locus_tag="BSU06400"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved hypothetical protein"
                     /protein_id="NP_388521.2"
                     /db_xref="EnsemblGenomes-Gn:BSU06400"
                     /db_xref="EnsemblGenomes-Tr:CAB12459"
                     /db_xref="GOA:O34624"
                     /db_xref="InterPro:IPR019264"
                     /db_xref="InterPro:IPR022930"
                     /db_xref="SubtiList:BG12814"
                     /db_xref="UniProtKB/Swiss-Prot:O34624"
                     /translation="MMQTILSNGIAMVLIILIINIVYVSFFTIRMILTLKGQRYLAAG
                     ISTIEILVYVTGLSLVLDNLDQIQNVIAYALGYGLGVIVGMKIEEKLALGYIMVNVIT
                     KELDLDLPKQLREKGYGVTNWVAGGLEGDRTALQILTPRRYELQLYDTIKTLDSKAFI
                     IAYEPKTIHGGFWVKAVKKRRIKE*"
                     /label="yebE CDS"
     gene            621763..622317
                     /gene="yebE"
                     /locus_tag="BSU_06400"
                     /old_locus_tag="BSU06400"
                     /label="yebE gene"
     CDS             622317..622514
                     /gene="yebG"
                     /locus_tag="BSU_06410"
                     /old_locus_tag="BSU06410"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved hypothetical protein"
                     /protein_id="NP_388523.1"
                     /db_xref="EnsemblGenomes-Gn:BSU06410"
                     /db_xref="EnsemblGenomes-Tr:CAB12461"
                     /db_xref="InterPro:IPR025930"
                     /db_xref="SubtiList:BG12816"
                     /db_xref="UniProtKB/Swiss-Prot:O34700"
                     /translation="MAKPKKKKFEVTEQQTIDAVLQQMKEEGYLPVRRMEEPIFMEKK
                     ENGSIQIVPCGKKIVFEGKLI*"
                     /label="yebG CDS"
     gene            622317..622514
                     /gene="yebG"
                     /locus_tag="BSU_06410"
                     /old_locus_tag="BSU06410"
                     /label="yebG gene"
     downshifts      622504
                     /Source="Nicolas_upshifts"
                     /id="D318"
                     /incds=0
                     /nref=2
                     /ntot=91
                     /MaxReadThrough="2.80904"
                     /MaxDrop="2.65424"
                     /score="17.462689"
                     /energy="-17.6"
                     /TU="U496"
                     /idTUdmin="U497"
                     /TUdmin=0
                     /isTUend="TRUE"
                     /label="downshifts"
     promotor_-35    622560..622567
                     /Source="Nicolas_upshift_promotors"
                     /id="U498"
                     /multdbtbs="SigA"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.97902097902098"
                     /psig=1
                     /xcortree=2428
                     /SigmaFactorBS="attagtagaatgaatttttgtatcgttcgataatatCGTTGA
                     CAttatccatgtccgtTGTTAAGATAAACATGAAATcaaaacacgacctcatataatc
                     t"
                     /listShort="NA, S231, purE, purK, purB, purC, purS, purQ,
                     purL, purF, S232, purM, purN, purH, purD"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    622582..622601
                     /Source="Nicolas_upshift_promotors"
                     /id="U498"
                     /multdbtbs="SigA"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.97902097902098"
                     /psig=1
                     /xcortree=2428
                     /SigmaFactorBS="attagtagaatgaatttttgtatcgttcgataatatCGTTGA
                     CAttatccatgtccgtTGTTAAGATAAACATGAAATcaaaacacgacctcatataatc
                     t"
                     /listShort="NA, S231, purE, purK, purB, purC, purS, purQ,
                     purL, purF, S232, purM, purN, purH, purD"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        622584
                     /Source="Nicolas_upshifts"
                     /id="U498"
                     /multdbtbs="SigA"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.97902097902098"
                     /psig=1
                     /xcortree=2428
                     /SigmaFactorBS="attagtagaatgaatttttgtatcgttcgataatatCGTTGA
                     CAttatccatgtccgtTGTTAAGATAAACATGAAATcaaaacacgacctcatataatc
                     t"
                     /listShort="NA, S231, purE, purK, purB, purC, purS, purQ,
                     purL, purF, S232, purM, purN, purH, purD"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     misc_RNA        622594..622696
                     /gene="gswD"
                     /locus_tag="BSU_misc_RNA_10"
                     /product="guanine riboswitch"
                     /experiment="publication(s) with functional evidences,
                     PMID:12787499, 15549109, 18072940, 19603494, 20022916,
                     20200045, 20204714, 21439477, 25023436, 27941758"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 12787499, 15549109,
                     18072940, 19603494, 20022916, 20200045, 20204714,
                     21439477, 25023436, 27941758; Product type n: RNA"
                     /label="gswD RNA"
     gene            622594..622696
                     /gene="gswD"
                     /locus_tag="BSU_misc_RNA_10"
                     /label="gswD gene"
     S_feature       622697..622836
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_698472_698611"
                     /HighExp="MG 10, MG 15, MG t5, BMM, MG 25, MG 5, HPh, GM
                     45, GM 90, M9-exp"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA, SigB"
                     /TUshortPSig="1, 0.966"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S231"
     CDS             622837..623325
                     /gene="purE"
                     /locus_tag="BSU_06420"
                     /old_locus_tag="BSU06420"
                     /EC_number="5.4.99.18"
                     /function="16.2: Construct biomass (Anabolism)"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 1c: Function from experimental evidences
                     in the studied genus; PubMedId: 12787499, 16138311,
                     9683488; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="N5-carboxyaminoimidazole ribonucleotide mutase"
                     /protein_id="NP_388524.1"
                     /db_xref="EnsemblGenomes-Gn:BSU06420"
                     /db_xref="EnsemblGenomes-Tr:CAB12462"
                     /db_xref="GOA:P12044"
                     /db_xref="InterPro:IPR000031"
                     /db_xref="InterPro:IPR024694"
                     /db_xref="InterPro:IPR033747"
                     /db_xref="InterPro:IPR035893"
                     /db_xref="SubtiList:BG10700"
                     /db_xref="UniProtKB/Swiss-Prot:P12044"
                     /translation="MQPLVGIIMGSTSDWETMKHACDILDELNVPYEKKVVSAHRTPD
                     FMFEYAETARERGIKVIIAGAGGAAHLPGMTAAKTTLPVIGVPVQSKALNGMDSLLSI
                     VQMPGGVPVATTSIGKAGAVNAGLLAAQILSAFDEDLARKLDERRENTKQTVLESSDQ
                     LV*"
                     /label="purE CDS"
     gene            622837..623325
                     /gene="purE"
                     /locus_tag="BSU_06420"
                     /old_locus_tag="BSU06420"
                     /label="purE gene"
     CDS             623318..624460
                     /gene="purK"
                     /locus_tag="BSU_06430"
                     /old_locus_tag="BSU06430"
                     /EC_number="6.3.4.18"
                     /function="16.2: Construct biomass (Anabolism)"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 1c: Function from experimental evidences
                     in the studied genus; PubMedId: 8998996, 9683488,
                     21931218, 25372694; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="N5-carboxyaminoimidazole ribonucleotide
                     synthase"
                     /protein_id="NP_388525.2"
                     /db_xref="EnsemblGenomes-Gn:BSU06430"
                     /db_xref="EnsemblGenomes-Tr:CAB12463"
                     /db_xref="GOA:P12045"
                     /db_xref="InterPro:IPR003135"
                     /db_xref="InterPro:IPR005875"
                     /db_xref="InterPro:IPR006115"
                     /db_xref="InterPro:IPR011054"
                     /db_xref="InterPro:IPR011761"
                     /db_xref="InterPro:IPR013815"
                     /db_xref="InterPro:IPR016185"
                     /db_xref="SubtiList:BG10701"
                     /db_xref="UniProtKB/Swiss-Prot:P12045"
                     /translation="MSKQIIYPGAVIGIIGGGQLGKMMAVSAKQMGYKVAVVDPVKDS
                     PCGQVADVEITAHYNDREAIRKLAEISDIITYEFENIDYDALHWLKDHAYLPQGSELL
                     LITQNRETEKKAIQSAGCEVAPYSIVKTKNELKQAVQELRLPAVLKTCRGGYDGKGQF
                     VIKEEAQMEQAAALLEHGTCILESWVSFKMELSVIVVRSVNGEISTFPTAENIHHNNI
                     LFQSIVPARVEKGIQQKAADLAVKLADELNLVGPLAVEMFLTEDGELLVNELAPRPHN
                     SGHYTLDLCETSQFEQHIRAVCGLPLGKTDLLKPGMMVNLLGDEVKLVEEDPELLKEA
                     KLYIYGKHEIKKGRKMGHITFMKQPEDEWIQEITNKWMNRDGGQAE*"
                     /label="purK CDS"
     gene            623318..624460
                     /gene="purK"
                     /locus_tag="BSU_06430"
                     /old_locus_tag="BSU06430"
                     /label="purK gene"
     CDS             624457..625752
                     /gene="purB"
                     /locus_tag="BSU_06440"
                     /old_locus_tag="BSU06440"
                     /EC_number="4.3.2.2"
                     /function="16.2: Construct biomass (Anabolism)"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 2a: Function from experimental evidences
                     in other organisms; PubMedId: 9622500, 9683488, 9890879,
                     11063569, 12787499; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="adenylosuccinate lyase"
                     /protein_id="NP_388526.1"
                     /db_xref="EnsemblGenomes-Gn:BSU06440"
                     /db_xref="EnsemblGenomes-Tr:CAB12464"
                     /db_xref="GOA:P12047"
                     /db_xref="InterPro:IPR000362"
                     /db_xref="InterPro:IPR004769"
                     /db_xref="InterPro:IPR008948"
                     /db_xref="InterPro:IPR019468"
                     /db_xref="InterPro:IPR020557"
                     /db_xref="InterPro:IPR022761"
                     /db_xref="InterPro:IPR024083"
                     /db_xref="PDB:1F1O"
                     /db_xref="SubtiList:BG10702"
                     /db_xref="UniProtKB/Swiss-Prot:P12047"
                     /translation="MIERYSRPEMSAIWTDENRFQAWLEVEILACEAWAELGVIPKED
                     VKVMRENASFDINRILEIEKDTRHDVVAFTRAVSESLGEERKWVHYGLTSTDVVDTAL
                     SYLLKQANDILLKDLERFVDIIKEKAKEHKYTVMMGRTHGVHAEPTTFGLKLALWHEE
                     MKRNLERFKQAKAGIEVGKISGAVGTYANIDPFVEQYVCEKLGLKAAPISTQTLQRDR
                     HADYMATLALIATSIEKFAVEIRGLQKSETREVEEFFAKGQKGSSAMPHKRNPIGSEN
                     MTGMARVIRGYMMTAYENVPLWHERDISHSSAERIILPDATIALNYMLNRFSNIVKNL
                     TVFPENMKRNMDRTLGLIYSQRVLLALIDTGLTREEAYDTVQPKAMEAWEKQVPFREL
                     VEAEEKITSRLSPEKIADCFDYNYHLKNVDLIFERLGLA*"
                     /label="purB CDS"
     gene            624457..625752
                     /gene="purB"
                     /locus_tag="BSU_06440"
                     /old_locus_tag="BSU06440"
                     /label="purB gene"
     promotor_-10    complement(624762..624781)
                     /Source="Nicolas_upshift_promotors"
                     /id="U499"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.791208791208791"
                     /psig="0.993006993006993"
                     /xcortree=1708
                     /SigmaFactorBS="tttcgctttttcttttataatgtcaacaaatctctcaagaTC
                     CTTGAGcaaaatatcgtttgCCTGTTTTAATAAGTAGGAAagagccgtatcaacaacg
                     t"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(624783)
                     /Source="Nicolas_upshifts"
                     /id="U499"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.791208791208791"
                     /psig="0.993006993006993"
                     /xcortree=1708
                     /SigmaFactorBS="tttcgctttttcttttataatgtcaacaaatctctcaagaTC
                     CTTGAGcaaaatatcgtttgCCTGTTTTAATAAGTAGGAAagagccgtatcaacaacg
                     t"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(624796..624803)
                     /Source="Nicolas_upshift_promotors"
                     /id="U499"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.791208791208791"
                     /psig="0.993006993006993"
                     /xcortree=1708
                     /SigmaFactorBS="tttcgctttttcttttataatgtcaacaaatctctcaagaTC
                     CTTGAGcaaaatatcgtttgCCTGTTTTAATAAGTAGGAAagagccgtatcaacaacg
                     t"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             625826..626551
                     /gene="purC"
                     /locus_tag="BSU_06450"
                     /old_locus_tag="BSU06450"
                     /EC_number="6.3.2.6"
                     /function="16.2: Construct biomass (Anabolism)"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 1c: Function from experimental evidences
                     in the studied genus; PubMedId: 2495272, 9683488,
                     10784038, 12787499, 26118696; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylaminoimidazole succinocarboxamide
                     synthetase"
                     /protein_id="NP_388527.1"
                     /db_xref="EnsemblGenomes-Gn:BSU06450"
                     /db_xref="EnsemblGenomes-Tr:CAB12465"
                     /db_xref="GOA:P12046"
                     /db_xref="InterPro:IPR001636"
                     /db_xref="InterPro:IPR018236"
                     /db_xref="InterPro:IPR028923"
                     /db_xref="InterPro:IPR033934"
                     /db_xref="SubtiList:BG10703"
                     /db_xref="UniProtKB/Swiss-Prot:P12046"
                     /translation="MNIVKNELLYEGKAKKIYKTDDENTLYVVYKDSATAFNGEKKAE
                     ISGKGRLNNEISSLIFKHLHAKGINNHFIERISETEQLIKKVTIVPLEVVVRNVVAGS
                     MSKRLGIPEGTELEQPIIEFYYKDDALGDPLITEDHIWLLKAATPEQVETIKSITTIV
                     NEELQSIFDDCHVRLIDFKLEFGLDAEGQVLLADEISPDTCRLWDKETNEKLDKDLFR
                     RNLGSLTDAYEEIFNRLGGIHHV*"
                     /label="purC CDS"
     gene            625826..626551
                     /gene="purC"
                     /locus_tag="BSU_06450"
                     /old_locus_tag="BSU06450"
                     /label="purC gene"
     CDS             626544..626798
                     /gene="purS"
                     /locus_tag="BSU_06460"
                     /old_locus_tag="BSU06460"
                     /function="16.2: Construct biomass (Anabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:10784038, 12787499"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 10784038, 12787499;
                     Product type f: factor"
                     /codon_start=1
                     /transl_table=11
                     /product="factor required for
                     phosphoribosylformylglycinamidine synthetase activity"
                     /protein_id="NP_388528.1"
                     /db_xref="EnsemblGenomes-Gn:BSU06460"
                     /db_xref="EnsemblGenomes-Tr:CAB12466"
                     /db_xref="GOA:P12049"
                     /db_xref="InterPro:IPR003850"
                     /db_xref="InterPro:IPR036604"
                     /db_xref="PDB:1T4A"
                     /db_xref="PDB:1TWJ"
                     /db_xref="SubtiList:BG10704"
                     /db_xref="UniProtKB/Swiss-Prot:P12049"
                     /translation="MYKVKVYVSLKESVLDPQGSAVQHALHSMTYNEVQDVRIGKYME
                     LTIEKSDRDLDVLVKEMCEKLLANTVIEDYRYEVEEVVAQ*"
                     /label="purS CDS"
     gene            626544..626798
                     /gene="purS"
                     /locus_tag="BSU_06460"
                     /old_locus_tag="BSU06460"
                     /label="purS gene"
     CDS             626795..627478
                     /gene="purQ"
                     /locus_tag="BSU_06470"
                     /old_locus_tag="BSU06470"
                     /EC_number="6.3.5.3"
                     /function="16.2: Construct biomass (Anabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:12787499, 15301530, 15301532, 10784038, 9683488"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 12787499, 15301530,
                     15301532, 10784038, 9683488; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylformylglycinamidine synthetase
                     subunit I"
                     /protein_id="NP_388529.1"
                     /db_xref="EnsemblGenomes-Gn:BSU06470"
                     /db_xref="EnsemblGenomes-Tr:CAB12467"
                     /db_xref="GOA:P12041"
                     /db_xref="InterPro:IPR010075"
                     /db_xref="InterPro:IPR017926"
                     /db_xref="InterPro:IPR029062"
                     /db_xref="SubtiList:BG10706"
                     /db_xref="UniProtKB/Swiss-Prot:P12041"
                     /translation="MKFAVIVLPGSNCDIDMYHAVKDELGHEVEYVWHEETSLDGFDG
                     VLIPGGFSYGDYLRCGAIARFANIMPAVKQAAAEGKPVLGVCNGFQILQELGLLPGAM
                     RRNKDLKFICRPVELIVQNDETLFTASYEKGESITIPVAHGEGNFYCDDETLATLKEN
                     NQIAFTYGSNINGSVSDIAGVVNEKGNVLGMMPHPERAVDELLGSADGLKLFQSIVKN
                     WRETHVTTA*"
                     /label="purQ CDS"
     gene            626795..627478
                     /gene="purQ"
                     /locus_tag="BSU_06470"
                     /old_locus_tag="BSU06470"
                     /label="purQ gene"
     CDS             627462..629690
                     /gene="purL"
                     /locus_tag="BSU_06480"
                     /old_locus_tag="BSU06480"
                     /EC_number="6.3.5.3"
                     /function="16.2: Construct biomass (Anabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:12787499, 15301532, 10784038, 9683488, 21671997"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 12787499, 15301532,
                     10784038, 9683488, 21671997; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylformylglycinamidine synthetase
                     subunit II"
                     /protein_id="NP_388530.2"
                     /db_xref="EnsemblGenomes-Gn:BSU06480"
                     /db_xref="EnsemblGenomes-Tr:CAB12468"
                     /db_xref="GOA:P12042"
                     /db_xref="InterPro:IPR010074"
                     /db_xref="InterPro:IPR010918"
                     /db_xref="InterPro:IPR016188"
                     /db_xref="InterPro:IPR036676"
                     /db_xref="InterPro:IPR036921"
                     /db_xref="SubtiList:BG10705"
                     /db_xref="UniProtKB/Swiss-Prot:P12042"
                     /translation="MSLLLEPSKEQIKEEKLYQQMGVSDDEFALIESILGRLPNYTEI
                     GIFSVMWSEHCSYKNSKPILRKFPTSGERVLQGPGEGAGIVDIGDNQAVVFKIESHNH
                     PSALEPYQGAATGVGGIIRDVFSMGARPIAVLNSLRFGELTSPRVKYLFEEVVAGIAG
                     YGNCIGIPTVGGEVQFDSSYEGNPLVNAMCVGLINHEDIKKGQAKGVGNTVMYVGAKT
                     GRDGIHGATFASEEMSDSSEEKRSAVQVGDPFMEKLLLEACLEVIQCDALVGIQDMGA
                     AGLTSSSAEMASKAGSGIEMNLDLIPQRETGMTAYEMMLSESQERMLLVIERGREQEI
                     IDIFDKYDLEAVSVGHVTDDKMLRLTHKGEVVCELPVDALAEEAPVYHKPSQEPAYYR
                     EFLETDVPAPQIEDANEMLKALLQQPTIASKEWVYDQYDYMVRTNTVVAPGSDAGVLR
                     IRGTKKALAMTTDCNARYLYLDPEVGGKIAVAEAARNIICSGAEPLAVTDNLNFGNPE
                     KPEIFWQIEKAADGISEACNVLSTPVIGGNVSLYNESNGTAIYPTPVIGMVGLIEDTA
                     HITTQHFKQAGDLVYVIGETKPEFAGSELQKMTEGRIYGKAPQIDLDVELSRQKALLD
                     AIKKGFVQSAHDVSEGGLGVAIAESVMTTENLGANVTVEGEAALLFSESQSRFVVSVK
                     KEHQAAFEATVKDAVHIGEVTADGILAIQNQDGQQMIHAQTKELERVWKGAIPCLLKS
                     KA*"
                     /label="purL CDS"
     gene            627462..629690
                     /gene="purL"
                     /locus_tag="BSU_06480"
                     /old_locus_tag="BSU06480"
                     /label="purL gene"
     downshifts      complement(627710)
                     /Source="Nicolas_upshifts"
                     /id="D319"
                     /incds=1
                     /nref=1
                     /ntot=47
                     /MaxReadThrough="0.69202"
                     /MaxDrop="3.99287"
                     /score="-6.56256716"
                     /energy="-16.7"
                     /TU="NA"
                     /idTUdmin="U499"
                     /TUdmin="-3147"
                     /isTUend="FALSE"
                     /label="downshifts"
     CDS             629666..631096
                     /gene="purF"
                     /locus_tag="BSU_06490"
                     /old_locus_tag="BSU06490"
                     /EC_number="2.4.2.14"
                     /function="16.2: Construct biomass (Anabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:9683488, 10049369, 12787499, 16321950, 17981983"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 9683488, 10049369,
                     12787499, 16321950, 17981983; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine phosphoribosylpyrophosphate
                     amidotransferase"
                     /protein_id="NP_388531.2"
                     /db_xref="EnsemblGenomes-Gn:BSU06490"
                     /db_xref="EnsemblGenomes-Tr:CAB12469"
                     /db_xref="GOA:P00497"
                     /db_xref="InterPro:IPR000836"
                     /db_xref="InterPro:IPR005854"
                     /db_xref="InterPro:IPR017932"
                     /db_xref="InterPro:IPR029055"
                     /db_xref="InterPro:IPR029057"
                     /db_xref="InterPro:IPR035584"
                     /db_xref="PDB:1AO0"
                     /db_xref="PDB:1GPH"
                     /db_xref="SubtiList:BG10707"
                     /db_xref="UniProtKB/Swiss-Prot:P00497"
                     /translation="MLAEIKGLNEECGVFGIWGHEEAPQITYYGLHSLQHRGQEGAGI
                     VATDGEKLTAHKGQGLITEVFQNGELSKVKGKGAIGHVRYATAGGGGYENVQPLLFRS
                     QNNGSLALAHNGNLVNATQLKQQLENQGSIFQTSSDTEVLAHLIKRSGHFTLKDQIKN
                     SLSMLKGAYAFLIMTETEMIVALDPNGLRPLSIGMMGDAYVVASETCAFDVVGATYLR
                     EVEPGEMLIINDEGMKSERFSMNINRSICSMEYIYFSRPDSNIDGINVHSARKNLGKM
                     LAQESAVEADVVTGVPDSSISAAIGYAEATGIPYELGLIKNRYVGRTFIQPSQALREQ
                     GVRMKLSAVRGVVEGKRVVMVDDSIVRGTTSRRIVTMLREAGATEVHVKISSPPIAHP
                     CFYGIDTSTHEELIASSHSVEEIRQEIGADTLSFLSVEGLLKGIGRKYDDSNCGQCLA
                     CFTGKYPTEIYQDTVLPHVKEAVLTK*"
                     /label="purF CDS"
     gene            629666..631096
                     /gene="purF"
                     /locus_tag="BSU_06490"
                     /old_locus_tag="BSU06490"
                     /label="purF gene"
     S_feature       631097..631197
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_706872_706972"
                     /HighExp="MG 15, MG 25, MG 10, MG 5, aero, S0, MG t5, Gly,
                     LPh, GM 90"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig=1
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S232"
     CDS             631198..632238
                     /gene="purM"
                     /locus_tag="BSU_06500"
                     /old_locus_tag="BSU06500"
                     /EC_number="6.3.3.1"
                     /function="16.2: Construct biomass (Anabolism)"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 2a: Function from experimental evidences
                     in other organisms; PubMedId: 9683488, 10508786, 12787499,
                     16321950; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylaminoimidazole synthetase"
                     /protein_id="NP_388532.2"
                     /db_xref="EnsemblGenomes-Gn:BSU06500"
                     /db_xref="EnsemblGenomes-Tr:CAB12470"
                     /db_xref="GOA:P12043"
                     /db_xref="InterPro:IPR004733"
                     /db_xref="InterPro:IPR010918"
                     /db_xref="InterPro:IPR016188"
                     /db_xref="InterPro:IPR036676"
                     /db_xref="InterPro:IPR036921"
                     /db_xref="SubtiList:BG10708"
                     /db_xref="UniProtKB/Swiss-Prot:P12043"
                     /translation="MSEAYKNAGVDIEAGYEAVKRMKKHVERTKRLGVMGSLGGFGGM
                     FDLSELSYQKPVLISGTDGVGTKLKLAFSMDKHDTIGVDAVAMCVNDVLAQGAEPLFF
                     LDYLAVGKADPVKIEQIVQGVAEGCEQSGSALVGGETAEMPGLYTADEYDIAGFSVGV
                     AEKDEIVTGEKIEEGHLLIGLSSSGLHSNGFSLVRKVLLDDAELDLDTTYEPFERPLG
                     EELLEPTRIYVKPVLAAVKSGKIDGMAHVTGGGFIENIPRMLPEGLSAEIDHGSWPIP
                     PIFSFLQEYGKLKEEDMFNVFNMGIGFVLAVKEEHLTDVIGTLESHGEKAYLIGRVKK
                     GEGVTFGGAALS*"
                     /label="purM CDS"
     gene            631198..632238
                     /gene="purM"
                     /locus_tag="BSU_06500"
                     /old_locus_tag="BSU06500"
                     /label="purM gene"
     CDS             632235..632822
                     /gene="purN"
                     /locus_tag="BSU_06510"
                     /old_locus_tag="BSU06510"
                     /EC_number="2.1.2.2"
                     /function="16.2: Construct biomass (Anabolism)"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 2a: Function from experimental evidences
                     in other organisms; PubMedId: 9683488, 10569930, 12787499,
                     19574646; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylglycinamide formyltransferase"
                     /protein_id="NP_388533.2"
                     /db_xref="EnsemblGenomes-Gn:BSU06510"
                     /db_xref="EnsemblGenomes-Tr:CAB12471"
                     /db_xref="GOA:P12040"
                     /db_xref="InterPro:IPR001555"
                     /db_xref="InterPro:IPR002376"
                     /db_xref="InterPro:IPR004607"
                     /db_xref="InterPro:IPR036477"
                     /db_xref="SubtiList:BG10709"
                     /db_xref="UniProtKB/Swiss-Prot:P12040"
                     /translation="MKKFAVFASGNGSNFEAIVTRLKEENWDASAALLVCDKPQAKVI
                     ERAEAFHIPSFAFEPKSYENKAAFEQAIIEQLRLHEVELIALAGYMRLIGDTLLQAYG
                     GKIINIHPSLLPAFPGIDAVGQAFRAGVKVAGITVHYVDEGMDTGPIIAQKAIEIDEH
                     DTLETIEQRIHKLEHKWYPSVIKQLLGLNNRGEKA*"
                     /label="purN CDS"
     gene            632235..632822
                     /gene="purN"
                     /locus_tag="BSU_06510"
                     /old_locus_tag="BSU06510"
                     /label="purN gene"
     misc_feature    632245..632259
                     /Source="Nicolas_upshift_promotors"
                     /id="U500"
                     /multdbtbs="-"
                     /comp="M18"
                     /sig="SigL"
                     /pcomp="0.52947052947053"
                     /psig="0.52947052947053"
                     /xcortree=2706
                     /SigmaFactorBS="aaaaaaggtgaaggcgtcacattcggcggtgcggcactttca
                     tgaaaaagtTTGCGGTATTTGCATcaggaaacggttcaaacttcgaagccatcgtcac
                     g"
                     /listShort="purN, purH, purD"
                     /GFF_Attribute="listLong"
                     /label="promotor_single_box"
                     /note="Geneious type: promotor_single_box"
     upshifts        632254
                     /Source="Nicolas_upshifts"
                     /id="U500"
                     /multdbtbs="-"
                     /comp="M18"
                     /sig="SigL"
                     /pcomp="0.52947052947053"
                     /psig="0.52947052947053"
                     /xcortree=2706
                     /SigmaFactorBS="aaaaaaggtgaaggcgtcacattcggcggtgcggcactttca
                     tgaaaaagtTTGCGGTATTTGCATcaggaaacggttcaaacttcgaagccatcgtcac
                     g"
                     /listShort="purN, purH, purD"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-10    complement(632521..632539)
                     /Source="Nicolas_upshift_promotors"
                     /id="U501"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.998001998001998"
                     /psig="0.998001998001998"
                     /xcortree=1204
                     /SigmaFactorBS="tccaggaaacgccggaagaagcgatgggTGAATGttaatgat
                     ttttcccCCATATGCTTGAAGGAGCGtatcaccgatcagcctcatatagccggcaaga
                     g"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(632528)
                     /Source="Nicolas_upshifts"
                     /id="U501"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.998001998001998"
                     /psig="0.998001998001998"
                     /xcortree=1204
                     /SigmaFactorBS="tccaggaaacgccggaagaagcgatgggTGAATGttaatgat
                     ttttcccCCATATGCTTGAAGGAGCGtatcaccgatcagcctcatatagccggcaaga
                     g"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(632555..632560)
                     /Source="Nicolas_upshift_promotors"
                     /id="U501"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.998001998001998"
                     /psig="0.998001998001998"
                     /xcortree=1204
                     /SigmaFactorBS="tccaggaaacgccggaagaagcgatgggTGAATGttaatgat
                     ttttcccCCATATGCTTGAAGGAGCGtatcaccgatcagcctcatatagccggcaaga
                     g"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             632819..634357
                     /gene="purH"
                     /locus_tag="BSU_06520"
                     /old_locus_tag="BSU06520"
                     /EC_number="2.1.2.3"
                     /EC_number="3.5.4.10"
                     /function="16.2: Construct biomass (Anabolism)"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 2a: Function from experimental evidences
                     in other organisms; PubMedId: 12787499, 1937050, 9683488;
                     Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="fused phosphoribosylaminoimidazole carboxy
                     formyl formyltransferase; inosine-monophosphate
                     cyclohydrolase"
                     /protein_id="NP_388534.2"
                     /db_xref="EnsemblGenomes-Gn:BSU06520"
                     /db_xref="EnsemblGenomes-Tr:CAB12472"
                     /db_xref="GOA:P12048"
                     /db_xref="InterPro:IPR002695"
                     /db_xref="InterPro:IPR011607"
                     /db_xref="InterPro:IPR016193"
                     /db_xref="InterPro:IPR024051"
                     /db_xref="InterPro:IPR036914"
                     /db_xref="SubtiList:BG10710"
                     /db_xref="UniProtKB/Swiss-Prot:P12048"
                     /translation="MTIKRALISVSDKTNLVPFVKELTELGVEVISTGGTKKLLQENG
                     VDVIGISEVTGFPEIMDGRLKTLHPNIHGGLLAVRGNEEHMAQINEHGIQPIDLVVVN
                     LYPFKETISKEDVTYEEAIENIDIGGPGMLRAASKNHQDVTVIVDPADYSPVLNQIKE
                     EGSVSLQKKRELAAKVFRHTAAYDALIADYLTNVVGEKEPEQFTVTFEKKQSLRYGEN
                     PHQEATFYQTALPVKGSIAQAEQLHGKELSYNNIKDADAAVQIVREFTEPAAVAVKHM
                     NPCGVGTGKTIAEAFDRAFEADKTSIFGGIIALNREVDKATAEALHNIFLEIIIAPSF
                     SQEALDVLTAKKNLRLLTLDVSAAVQKEKQLTSVQGGLLIQDLDMHGFDDAEISIPTK
                     REPNEQEWEDLKLAWKVVKHVKSNAIVLAKDNMTVGVGAGQMNRVGSAKIAIEQAGEK
                     AKGSALGSDAYFPMPDTVEEAAKAGVTAIIQPGGSIRDEDSIKKADEYGIAMVFTGIR
                     HFKH*"
                     /label="purH CDS"
     gene            632819..634357
                     /gene="purH"
                     /locus_tag="BSU_06520"
                     /old_locus_tag="BSU06520"
                     /label="purH gene"
     CDS             634373..635641
                     /gene="purD"
                     /locus_tag="BSU_06530"
                     /old_locus_tag="BSU06530"
                     /EC_number="6.3.4.13"
                     /function="16.2: Construct biomass (Anabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:9683488, 12787499, 16321950"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 9683488, 12787499,
                     16321950; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylglycinamide synthetase"
                     /protein_id="NP_388535.1"
                     /db_xref="EnsemblGenomes-Gn:BSU06530"
                     /db_xref="EnsemblGenomes-Tr:CAB12473"
                     /db_xref="GOA:P12039"
                     /db_xref="InterPro:IPR000115"
                     /db_xref="InterPro:IPR011054"
                     /db_xref="InterPro:IPR011761"
                     /db_xref="InterPro:IPR013815"
                     /db_xref="InterPro:IPR016185"
                     /db_xref="InterPro:IPR020559"
                     /db_xref="InterPro:IPR020560"
                     /db_xref="InterPro:IPR020561"
                     /db_xref="InterPro:IPR020562"
                     /db_xref="InterPro:IPR037123"
                     /db_xref="PDB:2XCL"
                     /db_xref="PDB:2XD4"
                     /db_xref="SubtiList:BG10711"
                     /db_xref="UniProtKB/Swiss-Prot:P12039"
                     /translation="MNVLIIGKGGREHTLAWKAAQSSLVENVFAAPGNDGMAASAQLV
                     NIEESDHAGLVSFAKQNQVGLTIVGPEVPLIEGLVDEFEKAGLHVFGPSKAAAIIEGS
                     KQFAKDLMKKYDIPTAEYETFTSFDEAKAYVQEKGAPIVIKADGLAAGKGVTVAMTEE
                     EAIACLHDFLEDEKFGDASASVVIEEYLSGEEFSLMAFVKGEKVYPMVIAQDHKRAFD
                     GDKGPNTGGMGAYSPVPQISEETVRHAVETIVKPAAKAMVQEGRSFTGVLYAGLMLTE
                     NGSKVIEFNARFGDPETQVVLPRMESDLVQVLLDLLDDKEVDLRWKDTAAVSVVLASE
                     GYPESYAKGTPIGSLAAETEQVVVFHAGTKAEGGEFVTNGGRVANVTAFDETFEAARD
                     RVYKAVDEIFKPGLFFRKDIGARALKAAQK*"
                     /label="purD CDS"
     gene            634373..635641
                     /gene="purD"
                     /locus_tag="BSU_06530"
                     /old_locus_tag="BSU06530"
                     /label="purD gene"
     downshifts      635626
                     /Source="Nicolas_upshifts"
                     /id="D320"
                     /incds=0
                     /nref=140
                     /ntot=249
                     /MaxReadThrough="2.77191"
                     /MaxDrop="5.90939"
                     /score="30.0999687"
                     /energy="-11.4"
                     /TU="NA"
                     /idTUdmin="U500"
                     /TUdmin=6
                     /isTUend="TRUE"
                     /label="downshifts"
     CDS             complement(635681..636100)
                     /gene="yezC"
                     /locus_tag="BSU_06540"
                     /old_locus_tag="BSU06540"
                     /function="16.3: Control"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; Product type r: regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="putative transcriptional regulator (Lrp/AsnC
                     family)"
                     /protein_id="NP_388536.2"
                     /db_xref="EnsemblGenomes-Gn:BSU06540"
                     /db_xref="EnsemblGenomes-Tr:CAB12474"
                     /db_xref="GOA:O31497"
                     /db_xref="InterPro:IPR000485"
                     /db_xref="InterPro:IPR011008"
                     /db_xref="InterPro:IPR011991"
                     /db_xref="InterPro:IPR019885"
                     /db_xref="InterPro:IPR019887"
                     /db_xref="InterPro:IPR019888"
                     /db_xref="InterPro:IPR036388"
                     /db_xref="InterPro:IPR036390"
                     /db_xref="SubtiList:BG12874"
                     /db_xref="UniProtKB/Swiss-Prot:O31497"
                     /translation="MDDTDLQILSHLQRNGRLTMVELGKLVGLSSPSAAERVRKLEDK
                     GVITGYSANICYEKLNKHVTAFILMEPKSCKHYAAFATSHPDVAENHRITGMYSYVTK
                     VVTESVHTLEDFIDTSMAHGKPTTLVVLSSSSCHPAF*"
                     /label="yezC CDS"
     gene            complement(635681..636100)
                     /gene="yezC"
                     /locus_tag="BSU_06540"
                     /old_locus_tag="BSU06540"
                     /label="yezC gene"
     misc_feature    complement(636170..636189)
                     /Source="Nicolas_upshift_promotors"
                     /id="U502"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.99000999000999"
                     /psig="0.999000999001"
                     /xcortree=3125
                     /SigmaFactorBS="ccccctctctgattgatggctttattatagaaaaaataagac
                     ggcatccaTATGCTACAATGAAGTTAAAtcaacagcattaccttacgatcaaaggaat
                     t"
                     /listShort="yezC"
                     /GFF_Attribute="listLong"
                     /label="promotor_single_box"
                     /note="Geneious type: promotor_single_box"
     upshifts        complement(636179)
                     /Source="Nicolas_upshifts"
                     /id="U502"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.99000999000999"
                     /psig="0.999000999001"
                     /xcortree=3125
                     /SigmaFactorBS="ccccctctctgattgatggctttattatagaaaaaataagac
                     ggcatccaTATGCTACAATGAAGTTAAAtcaacagcattaccttacgatcaaaggaat
                     t"
                     /listShort="yezC"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             636244..637518
                     /gene="yecA"
                     /locus_tag="BSU_06550"
                     /old_locus_tag="BSU06550"
                     /function="16.1: Circulate"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 15849754, 16850406,
                     26319875, 27723097, 24678831; Product type t :
                     transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="putative amino acid exporter"
                     /protein_id="NP_388537.2"
                     /db_xref="EnsemblGenomes-Gn:BSU06550"
                     /db_xref="EnsemblGenomes-Tr:CAB12475"
                     /db_xref="GOA:O34560"
                     /db_xref="InterPro:IPR002293"
                     /db_xref="SubtiList:BG12817"
                     /db_xref="UniProtKB/Swiss-Prot:O34560"
                     /translation="MLPELQRSITWIQGTALTIGAVLGCGILILPSVTADTAGPASLF
                     VWVFMSFLSFFLVGTLARLVKIAPSAGGITAYVQLAFQKKAGAILGWIMLGSVPIGVP
                     IIALTGAHYVSYITEAADWQITLIAGCMLAISILLHMRGIQLSANISTLVICVIVFLL
                     VTSIAVSLPHVTIAEFKPFLPHGWSAAGSVSVMIFFSFVGWEMITPLAEEFHRPEKDV
                     PLSLFLAASCVAGLYIMLSFVTVGTHSYGENGEIASLAMLISKGAGESGVYVTVCLAL
                     FITFATIHANIAGFSRMVYALAREGHIPVFFGKLSATKRTPIRVLTAMAAVFGLVLAA
                     HGLFQIDLTTLLKGPSAAFIASYICTMAAALKLLGRRDIGWWMALGAFVACAVIYSFS
                     GWALLYPAVLAAAGYFYMKTKGGHKKKLDHVL*"
                     /label="yecA CDS"
     gene            636244..637518
                     /gene="yecA"
                     /locus_tag="BSU_06550"
                     /old_locus_tag="BSU06550"
                     /label="yecA gene"
     downshifts      637467
                     /Source="Nicolas_upshifts"
                     /id="D321"
                     /incds=0
                     /nref=4
                     /ntot=64
                     /MaxReadThrough="0.796809999999999"
                     /MaxDrop="2.92696"
                     /score="1.68718502"
                     /energy="-14.2"
                     /TU="NA"
                     /idTUdmin="U498"
                     /TUdmin=1825
                     /isTUend="FALSE"
                     /label="downshifts"
     CDS             complement(637533..637760)
                     /gene="yezF"
                     /locus_tag="BSU_06559"
                     /old_locus_tag="BSU06559"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 5: Unknown function"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_003097691.1"
                     /db_xref="EnsemblGenomes-Gn:BSU06559"
                     /db_xref="EnsemblGenomes-Tr:CAX52578"
                     /db_xref="GOA:C0H3X3"
                     /db_xref="InterPro:IPR021309"
                     /db_xref="UniProtKB/Swiss-Prot:C0H3X3"
                     /translation="MKPNISLINAVFRIACGLTIMSAASAKFTKKPWCRMHLFYIFMG
                     AMKAGSGILRFCPVTYMFQHSDSGNNEHQNG*"
                     /label="yezF CDS"
     gene            complement(637533..637760)
                     /gene="yezF"
                     /locus_tag="BSU_06559"
                     /old_locus_tag="BSU06559"
                     /label="yezF gene"
     downshifts      complement(637544)
                     /Source="Nicolas_upshifts"
                     /id="D322"
                     /incds=0
                     /nref=29
                     /ntot=46
                     /MaxReadThrough="0.14199"
                     /MaxDrop="6.82335"
                     /score="34.1397958"
                     /energy="-13.9"
                     /TU="NA"
                     /idTUdmin="U504"
                     /TUdmin=0
                     /isTUend="TRUE"
                     /label="downshifts"
     S_feature       complement(637761..638181)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_713536_713956_c"
                     /HighExp="S8, S7, S5, S6, S4, ferm, nit, BT, Pyr, T5.0H"
                     /AntisenseName="yerA"
                     /AntisenseCor="0.38264258041500998"
                     /AntisenseRegPval="-10.1"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigGF"
                     /TUshortPSig="0.996"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S233"
     promotor_-35    637828..637833
                     /Source="Nicolas_upshift_promotors"
                     /id="U503"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.59040959040959"
                     /psig=1
                     /xcortree=1592
                     /SigmaFactorBS="aaaagttttttaatcgaaccttcaaaaatttgtaacgttttt
                     atCGTGCGtgatgaggaaggaTGTGATACCATGAGTCTAATacatgtaaaggagagta
                     t"
                     /listShort="yerA, yerB, yerC"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     upshifts        637844
                     /Source="Nicolas_upshifts"
                     /id="U503"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.59040959040959"
                     /psig=1
                     /xcortree=1592
                     /SigmaFactorBS="aaaagttttttaatcgaaccttcaaaaatttgtaacgttttt
                     atCGTGCGtgatgaggaaggaTGTGATACCATGAGTCTAATacatgtaaaggagagta
                     t"
                     /listShort="yerA, yerB, yerC"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-10    637847..637866
                     /Source="Nicolas_upshift_promotors"
                     /id="U503"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.59040959040959"
                     /psig=1
                     /xcortree=1592
                     /SigmaFactorBS="aaaagttttttaatcgaaccttcaaaaatttgtaacgttttt
                     atCGTGCGtgatgaggaaggaTGTGATACCATGAGTCTAATacatgtaaaggagagta
                     t"
                     /listShort="yerA, yerB, yerC"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     CDS             637889..639631
                     /gene="yerA"
                     /locus_tag="BSU_06560"
                     /old_locus_tag="BSU06560"
                     /EC_number="3.5.4.2"
                     /function="16.11: Scavenge (Catabolism)"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 23109554; Product type
                     e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative adenine deaminase YerA"
                     /protein_id="NP_388538.1"
                     /db_xref="EnsemblGenomes-Gn:BSU06560"
                     /db_xref="EnsemblGenomes-Tr:CAB12476"
                     /db_xref="GOA:O34909"
                     /db_xref="InterPro:IPR006679"
                     /db_xref="InterPro:IPR006680"
                     /db_xref="InterPro:IPR011059"
                     /db_xref="InterPro:IPR026912"
                     /db_xref="InterPro:IPR032466"
                     /db_xref="SubtiList:BG12829"
                     /db_xref="UniProtKB/Swiss-Prot:O34909"
                     /translation="MSERTFNWKNKDIRAQVDVVDSKLLPTLLLRNALVLNPYVKQWL
                     KKNIWIYQDRIVYVGHELPNRAEEIHTIDCEGKYIVPGYIEPHAHPFQIYNPQTLAEY
                     VSQYGTTTFVNDNLFLLLQSGKKKALTILNELKKQPVQYFWWSRYDLQTEVLNEDHVL
                     PFDVRKQWIEHPDVIQGGEMTGWPRLVDGDDLMLHCMQATKKQRKRIEGHFPGASDKT
                     LTKMKLFGADCDHEAMTGDEVMRRLELGYYVSLRNSSIRPDVRKILQELHEKGFRYYD
                     HFFYTTDGATPNFYKGGMTNELIRIALEEGVPAIDAYNMASFNIAKYYQMDDYLGVVG
                     PGRLASLNILEDPLNPNPVTVLSKGTILRENGCDLKAFTKTDWHKGGLVPLELSYDMT
                     MDDLQFSMPMGVKMRNAVIMEPYMIEIDNSMEQLSFDHDESYLTMLDRHGKWRVNTMI
                     KGFASSVQGFVSSFTTTGDIVAIGKNKADMLLAFARMKEIGGGIVLAENGNILHEIPL
                     ALCGCASSEAYEDVLEKEQKLRDLLTERGYEFCDPIYTLLFLQSTHLPYIRITPRGIF
                     DVMKKTVLFPSIMR*"
                     /label="yerA CDS"
     gene            637889..639631
                     /gene="yerA"
                     /locus_tag="BSU_06560"
                     /old_locus_tag="BSU06560"
                     /label="yerA gene"
     promotor_-10    complement(638166..638177)
                     /Source="Nicolas_upshift_promotors"
                     /id="U504"
                     /multdbtbs="-"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp="0.996003996003996"
                     /psig="0.996003996003996"
                     /xcortree=923
                     /SigmaFactorBS="aaaaataagttatcattcacgaatgtcgttgttccgtattga
                     gaCACATATtccgccagtgtttGGGGATTATATAtttgaaaaggatgtgcgtgcggtt
                     c"
                     /listShort="S233, yezF"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(638181)
                     /Source="Nicolas_upshifts"
                     /id="U504"
                     /multdbtbs="-"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp="0.996003996003996"
                     /psig="0.996003996003996"
                     /xcortree=923
                     /SigmaFactorBS="aaaaataagttatcattcacgaatgtcgttgttccgtattga
                     gaCACATATtccgccagtgtttGGGGATTATATAtttgaaaaggatgtgcgtgcggtt
                     c"
                     /listShort="S233, yezF"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(638191..638197)
                     /Source="Nicolas_upshift_promotors"
                     /id="U504"
                     /multdbtbs="-"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp="0.996003996003996"
                     /psig="0.996003996003996"
                     /xcortree=923
                     /SigmaFactorBS="aaaaataagttatcattcacgaatgtcgttgttccgtattga
                     gaCACATATtccgccagtgtttGGGGATTATATAtttgaaaaggatgtgcgtgcggtt
                     c"
                     /listShort="S233, yezF"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     downshifts      638212
                     /Source="Nicolas_upshifts"
                     /id="D323"
                     /incds=1
                     /nref=13
                     /ntot=109
                     /MaxReadThrough="7.92321"
                     /MaxDrop="3.44855"
                     /score="1.68718502"
                     /energy="-14.2"
                     /TU="U503"
                     /idTUdmin="U498"
                     /TUdmin=2570
                     /isTUend="FALSE"
                     /label="downshifts"
     promotor_-35    639605..639611
                     /Source="Nicolas_upshift_promotors"
                     /id="U505"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.4995004995005"
                     /psig="0.996003996003996"
                     /xcortree=2171
                     /SigmaFactorBS="cgcattacgccaagaggaatattcgacgtcatgaaaaaaact
                     GTACTCTttccatcgataaTGCGTTAAAATATAAAAGAGcagggagccgacatatgaa
                     a"
                     /listShort="yerB, yerC"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     upshifts        639623
                     /Source="Nicolas_upshifts"
                     /id="U505"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.4995004995005"
                     /psig="0.996003996003996"
                     /xcortree=2171
                     /SigmaFactorBS="cgcattacgccaagaggaatattcgacgtcatgaaaaaaact
                     GTACTCTttccatcgataaTGCGTTAAAATATAAAAGAGcagggagccgacatatgaa
                     a"
                     /listShort="yerB, yerC"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-10    639624..639643
                     /Source="Nicolas_upshift_promotors"
                     /id="U505"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.4995004995005"
                     /psig="0.996003996003996"
                     /xcortree=2171
                     /SigmaFactorBS="cgcattacgccaagaggaatattcgacgtcatgaaaaaaact
                     GTACTCTttccatcgataaTGCGTTAAAATATAAAAGAGcagggagccgacatatgaa
                     a"
                     /listShort="yerB, yerC"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     CDS             639658..640653
                     /gene="yerB"
                     /locus_tag="BSU_06570"
                     /old_locus_tag="BSU06570"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 12073041; Product type
                     lp: lipoprotein"
                     /codon_start=1
                     /transl_table=11
                     /product="putative lipoprotein"
                     /protein_id="NP_388539.1"
                     /db_xref="EnsemblGenomes-Gn:BSU06570"
                     /db_xref="EnsemblGenomes-Tr:CAB12477"
                     /db_xref="GOA:O34968"
                     /db_xref="InterPro:IPR021416"
                     /db_xref="InterPro:IPR023158"
                     /db_xref="InterPro:IPR035328"
                     /db_xref="PDB:2PSB"
                     /db_xref="SubtiList:BG12830"
                     /db_xref="UniProtKB/Swiss-Prot:O34968"
                     /translation="MKKWMTVCALCFVFFLLVSCQQKDAVPDTAKKLKAPLTGLKTEQ
                     KVTERRPVAVVVNNHPKARPQSGLSKADIVIEALAEGQITRFLAIFQSQMPETVGPVR
                     SAREYFVTLSNGFDSIFVHHGWSPGAKKQLESGAADYMNGLDFDGSLFWRADFSKPPH
                     NSYTSYDYIKKAAEQKGYKLKQETNPLLFQTSDAKPANESYNVRVDYGTNNVTNLVEY
                     NYDKKAEFYTRSSDGVITTDRETGKPVAMQNIFIVEASHHIIDQDGRRDIDLESGGKG
                     LLFQHGNVIETDWKQVNGRIVPVKDGKWLPFVPGKTWINIVPDLDAASISKGEGV*"
                     /label="yerB CDS"
     gene            639658..640653
                     /gene="yerB"
                     /locus_tag="BSU_06570"
                     /old_locus_tag="BSU06570"
                     /label="yerB gene"
     CDS             640656..640970
                     /gene="yerC"
                     /locus_tag="BSU_06580"
                     /old_locus_tag="BSU06580"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 2b: Function from indirect experimental
                     evidences (e.g. phenotypes); PubMedId: 23504016, 26735940;
                     Product type r: regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional repressor-histidine operons"
                     /protein_id="NP_388540.1"
                     /db_xref="EnsemblGenomes-Gn:BSU06580"
                     /db_xref="EnsemblGenomes-Tr:CAB12478"
                     /db_xref="GOA:Q7BVT7"
                     /db_xref="InterPro:IPR000831"
                     /db_xref="InterPro:IPR010921"
                     /db_xref="InterPro:IPR013368"
                     /db_xref="SubtiList:BG12831"
                     /db_xref="UniProtKB/Swiss-Prot:Q7BVT7"
                     /translation="MQIDKLRGKELDQLFNSILSLKDLEECYRFFDDLCTINEIQSLA
                     QRLEVARMLREGNTYHKIETETGASTATISRVKRCLNYGNDAYEMALDRVKETETESS
                     SK*"
                     /label="yerC CDS"
     gene            640656..640970
                     /gene="yerC"
                     /locus_tag="BSU_06580"
                     /old_locus_tag="BSU06580"
                     /label="yerC gene"
     downshifts      640833
                     /Source="Nicolas_upshifts"
                     /id="D324"
                     /incds=1
                     /nref=1
                     /ntot=25
                     /MaxReadThrough="7.1005"
                     /MaxDrop="2.3494"
                     /score="10.9674476"
                     /energy="-15.8"
                     /TU="U503,U505"
                     /idTUdmin="U503"
                     /TUdmin="-374"
                     /isTUend="FALSE"
                     /label="downshifts"
     downshifts      640975
                     /Source="Nicolas_upshifts"
                     /id="D325"
                     /incds=0
                     /nref=78
                     /ntot=262
                     /MaxReadThrough="3.58776"
                     /MaxDrop="5.59364"
                     /score="10.9674476"
                     /energy="-15.8"
                     /TU="U503,U505"
                     /idTUdmin="U503"
                     /TUdmin="-232"
                     /isTUend="FALSE"
                     /label="downshifts"
     CDS             complement(641005..642582)
                     /gene="yerD"
                     /locus_tag="BSU_06590"
                     /old_locus_tag="BSU06590"
                     /EC_number="1.4.1.13"
                     /function="16.11: Scavenge (Catabolism)"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 15805528, 17114254,
                     19948795; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative osmotic shock glutamate synthase
                     subunit (flavoprotein subunit, ferredoxin-dependent)"
                     /protein_id="NP_388541.1"
                     /db_xref="EnsemblGenomes-Gn:BSU06590"
                     /db_xref="EnsemblGenomes-Tr:CAB12479"
                     /db_xref="GOA:O34849"
                     /db_xref="InterPro:IPR002932"
                     /db_xref="InterPro:IPR013785"
                     /db_xref="InterPro:IPR024188"
                     /db_xref="InterPro:IPR027283"
                     /db_xref="SubtiList:BG12832"
                     /db_xref="UniProtKB/Swiss-Prot:O34849"
                     /translation="METIIIALIAFIIGIIAIPIVLFAWIYIKDEKQQEHSILRNYPV
                     IGRFRYILEKIGPELRQYLYSNDNEEQPFSRKEYEQTVISGKYKSRMMGFGSVRDFDK
                     PGYYIRNAMFPKQREEMHVNQTPKIETQIYKMDADNLFKRKEHAEHIKADPYFLHPDD
                     VQVIGEHTCEKPFYVKGLVGQSAMSYGSLGERAVTALSKGLHLAGGTWMNTGEGGLSE
                     YHLKGGADIICQIGPGLFGVRKRNGEFSWEEFKRKSRIDQIKAFELKLAQGAKTRGGH
                     VDGAKVSEEVADIRNVEPGKSIDSPNRFYEFSNPPEMLDFIEKLRDVGQKPVGIKLVA
                     GHPEELHELFSHMQKSGKHPDFITIDGSEGGTGASFYELADTVGLPIMTALPIVDTLL
                     KQYGLRSQLKIFASGKLLTPDKIAVALALGADFVNIARGMMFSVGCIRALVCHTNTCP
                     AGVATTDPKLQKALSVEEKQHRVCNYVISLREGLFNLAAAAGINSPIHFSKEHVVYRK
                     EDGSIINIDNLIHQFVS*"
                     /label="yerD CDS"
     gene            complement(641005..642582)
                     /gene="yerD"
                     /locus_tag="BSU_06590"
                     /old_locus_tag="BSU06590"
                     /label="yerD gene"
     downshifts      complement(641019)
                     /Source="Nicolas_upshifts"
                     /id="D326"
                     /incds=0
                     /nref=7
                     /ntot=24
                     /MaxReadThrough="2.99325"
                     /MaxDrop="5.6389"
                     /score="34.8793815"
                     /energy="-15.8"
                     /TU="U506"
                     /idTUdmin="U506"
                     /TUdmin="-88"
                     /isTUend="FALSE"
                     /label="downshifts"
     promotor_-10    complement(642596..642615)
                     /Source="Nicolas_upshift_promotors"
                     /id="U506"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp="0.997002997002997"
                     /psig="0.997002997002997"
                     /xcortree=244
                     /SigmaFactorBS="ggcaggagcacacatttttcaccagattccttctgctatTGT
                     TTGGaaagtgttctactgTGGAAATGGTTACATAAAAAgggaggctgagagatggaaa
                     c"
                     /listShort="yerD"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(642615)
                     /Source="Nicolas_upshifts"
                     /id="U506"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp="0.997002997002997"
                     /psig="0.997002997002997"
                     /xcortree=244
                     /SigmaFactorBS="ggcaggagcacacatttttcaccagattccttctgctatTGT
                     TTGGaaagtgttctactgTGGAAATGGTTACATAAAAAgggaggctgagagatggaaa
                     c"
                     /listShort="yerD"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(642630..642636)
                     /Source="Nicolas_upshift_promotors"
                     /id="U506"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp="0.997002997002997"
                     /psig="0.997002997002997"
                     /xcortree=244
                     /SigmaFactorBS="ggcaggagcacacatttttcaccagattccttctgctatTGT
                     TTGGaaagtgttctactgTGGAAATGGTTACATAAAAAgggaggctgagagatggaaa
                     c"
                     /listShort="yerD"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-35    642779..642782
                     /Source="Nicolas_upshift_promotors"
                     /id="U507"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.95004995004995"
                     /psig=1
                     /xcortree=2610
                     /SigmaFactorBS="aaaacacctttttcagtgaataacgagattaacggctttttc
                     cGTTTttccgcgctatgtgaaTTTGTTATAATGTTTAAATGgtaacaaacgaatggag
                     g"
                     /listShort="pcrB, pcrA, ligA, yerH, S234, yerI"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     upshifts        642796
                     /Source="Nicolas_upshifts"
                     /id="U507"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.95004995004995"
                     /psig=1
                     /xcortree=2610
                     /SigmaFactorBS="aaaacacctttttcagtgaataacgagattaacggctttttc
                     cGTTTttccgcgctatgtgaaTTTGTTATAATGTTTAAATGgtaacaaacgaatggag
                     g"
                     /listShort="pcrB, pcrA, ligA, yerH, S234, yerI"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-10    642799..642818
                     /Source="Nicolas_upshift_promotors"
                     /id="U507"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.95004995004995"
                     /psig=1
                     /xcortree=2610
                     /SigmaFactorBS="aaaacacctttttcagtgaataacgagattaacggctttttc
                     cGTTTttccgcgctatgtgaaTTTGTTATAATGTTTAAATGgtaacaaacgaatggag
                     g"
                     /listShort="pcrB, pcrA, ligA, yerH, S234, yerI"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     CDS             642847..643533
                     /gene="pcrB"
                     /locus_tag="BSU_06600"
                     /old_locus_tag="BSU06600"
                     /function="16.13: Shape"
                     /function="16.2: Construct biomass (Anabolism)"
                     /function="16.8: Protect"
                     /experiment="publication(s) with functional evidences,
                     PMID:16377641, 21761520, 21214173, 27226549"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 16377641, 21761520,
                     21214173, 27226549; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="heptaprenylglyceryl-phosphate synthase"
                     /protein_id="NP_388542.1"
                     /db_xref="EnsemblGenomes-Gn:BSU06600"
                     /db_xref="EnsemblGenomes-Tr:CAB12480"
                     /db_xref="GOA:O34790"
                     /db_xref="InterPro:IPR008205"
                     /db_xref="PDB:1VIZ"
                     /db_xref="PDB:3VZX"
                     /db_xref="PDB:3VZY"
                     /db_xref="PDB:3VZZ"
                     /db_xref="PDB:3W00"
                     /db_xref="SubtiList:BG12833"
                     /db_xref="UniProtKB/Swiss-Prot:O34790"
                     /translation="MYDVTEWKHVFKLDPNKDLPDEQLEILCESGTDAVIIGGSDGVT
                     EDNVLRMMSKVRRFLVPCVLEVSAIEAIVPGFDLYFIPSVLNSKNADWIVGMHQKAMK
                     EYGELMSMEEIVAEGYCIANPDCKAAALTEADADLNMDDIVAYARVSELLQLPIFYLE
                     YSGVLGDIEAVKKTKAVLETSTLFYGGGIKDAETAKQYAEHADVIVVGNAVYEDFDRA
                     LKTVAAVKGE*"
                     /label="pcrB CDS"
     gene            642847..643533
                     /gene="pcrB"
                     /locus_tag="BSU_06600"
                     /old_locus_tag="BSU06600"
                     /label="pcrB gene"
     CDS             643595..645814
                     /gene="pcrA"
                     /locus_tag="BSU_06610"
                     /old_locus_tag="BSU06610"
                     /EC_number="3.6.4.12"
                     /function="16.6: Maintain"
                     /function="16.8: Protect"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 2a: Function from experimental evidences
                     in other organisms; PubMedId: 12073041, 12682299,
                     14594837, 16267290, 26070154; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent DNA helicase"
                     /protein_id="NP_388543.1"
                     /db_xref="EnsemblGenomes-Gn:BSU06610"
                     /db_xref="EnsemblGenomes-Tr:CAB12481"
                     /db_xref="GOA:O34580"
                     /db_xref="InterPro:IPR000212"
                     /db_xref="InterPro:IPR005751"
                     /db_xref="InterPro:IPR014016"
                     /db_xref="InterPro:IPR014017"
                     /db_xref="InterPro:IPR027417"
                     /db_xref="InterPro:IPR034739"
                     /db_xref="SubtiList:BG12834"
                     /db_xref="UniProtKB/Swiss-Prot:O34580"
                     /translation="MNYISNQLLSGLNPVQQEAVKTTDGPLLLMAGAGSGKTRVLTHR
                     IAYLMAEKHVAPWNILAITFTNKAAREMKERVESILGPGADDIWISTFHSMCVRILRR
                     DIDRIGINRNFSILDTADQLSVIKGILKERNLDPKKFDPRSILGTISSAKNELTEPEE
                     FSKVAGGYYDQVVSDVYADYQKKLLKNQSLDFDDLIMTTIKLFDRVPEVLEFYQRKFQ
                     YIHVDEYQDTNRAQYMLVKQLAERFQNLCVVGDSDQSIYRWRGADITNILSFEKDYPN
                     ASVILLEQNYRSTKRILRAANEVIKNNSNRKPKNLWTENDEGIKISYYRGDNEFGEGQ
                     FVAGKIHQLHSTGKRKLSDIAILYRTNAQSRVIEETLLKAGLNYNIVGGTKFYDRKEI
                     KDILAYLRLVSNPDDDISFTRIVNVPKRGVGATSLEKIASYAAINGLSFFQAIQQVDF
                     IGVSAKAANALDSFRQMIENLTNMQDYLSITELTEEILDKTEYREMLKAEKSIEAQSR
                     LENIDEFLSVTKNFEQKSEDKTLVAFLTDLALIADIDQLDQKEEESGGKDAITLMTLH
                     AAKGLEFPVVFLMGLEEGVFPHSRSLMEEAEMEEERRLAYVGITRAEQELYLTNAKMR
                     TLFGRTNMNPESRFIAEIPDDLLENLNEKKETRATSARKMQPRRGPVSRPVSYASKTG
                     GDTLNWAVGDKAGHKKWGTGTVVSVKGEGEGTELDIAFPSPVGVKRLLAAFAPIEKQ*
                     "
                     /label="pcrA CDS"
     gene            643595..645814
                     /gene="pcrA"
                     /locus_tag="BSU_06610"
                     /old_locus_tag="BSU06610"
                     /label="pcrA gene"
     CDS             645838..647844
                     /gene="ligA"
                     /locus_tag="BSU_06620"
                     /old_locus_tag="BSU06620"
                     /EC_number="6.5.1.2"
                     /function="16.6: Maintain"
                     /function="16.9: Replicate"
                     /experiment="publication(s) with functional evidences,
                     PMID:164915, 11095673, 12682299, 16267290"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 164915, 11095673,
                     12682299, 16267290; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA ligase (NAD-dependent)"
                     /protein_id="NP_388544.1"
                     /db_xref="EnsemblGenomes-Gn:BSU06620"
                     /db_xref="EnsemblGenomes-Tr:CAB12482"
                     /db_xref="GOA:O31498"
                     /db_xref="InterPro:IPR001357"
                     /db_xref="InterPro:IPR001679"
                     /db_xref="InterPro:IPR003583"
                     /db_xref="InterPro:IPR004149"
                     /db_xref="InterPro:IPR004150"
                     /db_xref="InterPro:IPR010994"
                     /db_xref="InterPro:IPR012340"
                     /db_xref="InterPro:IPR013839"
                     /db_xref="InterPro:IPR013840"
                     /db_xref="InterPro:IPR018239"
                     /db_xref="InterPro:IPR033136"
                     /db_xref="InterPro:IPR036420"
                     /db_xref="SubtiList:BG12835"
                     /db_xref="UniProtKB/Swiss-Prot:O31498"
                     /translation="MDKETAKQRAEELRRTINKYSYEYYTLDEPSVPDAEYDRLMQEL
                     IAIEEEHPDLRTPDSPTQRVGGAVLEAFQKVTHGTPMLSLGNAFNADDLRDFDRRVRQ
                     SVGDDVAYNVELKIDGLAVSLRYEDGYFVRGATRGDGTTGEDITENLKTIRNIPLKMN
                     RELSIEVRGEAYMPKRSFEALNEERIKNEEEPFANPRNAAAGSLRQLDPKIAAKRNLD
                     IFVYSIAELDEMGVETQSQGLDFLDELGFKTNQERKKCGSIEEVITLIDELQAKRADL
                     PYEIDGIVIKVDSLDQQEELGFTAKSPRWAIAYKFPAEEVVTKLLDIELNVGRTGVIT
                     PTAILEPVKVAGTTVSRASLHNEDLIKEKDIRILDKVVVKKAGDIIPEVVNVLVDQRT
                     GEEKEFSMPTECPECGSELVRIEGEVALRCINPECPAQIREGLIHFVSRNAMNIDGLG
                     ERVITQLFEENLVRNVADLYKLTKERVIQLERMGEKSTENLISSIQKSKENSLERLLF
                     GLGIRFIGSKAAKTLAMHFESLENLKKASKEELLAVDEIGEKMADAVITYFHKEEMLE
                     LLNELQELGVNTLYKGPKKVKAEDSDSYFAGKTIVLTGKLEELSRNEAKAQIEALGGK
                     LTGSVSKNTDLVIAGEAAGSKLTKAQELNIEVWNEEQLMGELKK*"
                     /label="ligA CDS"
     gene            645838..647844
                     /gene="ligA"
                     /locus_tag="BSU_06620"
                     /old_locus_tag="BSU06620"
                     /label="ligA gene"
     CDS             647860..649050
                     /gene="yerH"
                     /locus_tag="BSU_06630"
                     /old_locus_tag="BSU06630"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 16267290; Product type
                     lp: lipoprotein"
                     /codon_start=1
                     /transl_table=11
                     /product="putative lipoprotein"
                     /protein_id="NP_388545.1"
                     /db_xref="EnsemblGenomes-Gn:BSU06630"
                     /db_xref="EnsemblGenomes-Tr:CAB12483"
                     /db_xref="GOA:O34629"
                     /db_xref="InterPro:IPR011426"
                     /db_xref="SubtiList:BG12836"
                     /db_xref="UniProtKB/Swiss-Prot:O34629"
                     /translation="MKKTLALAATAAVLMLSACSSGFGGEKEEEITQKTAKSSEKAIV
                     PKYNISDSYYKMVLPFKAGKARGLTTEQLNTRLDIDEFETGLMRLAQDSFSTDDYLFQ
                     EGQYLDEDTVLSWLARKKTGSDLKKAEKEDKNFKNEGLNPALPSSGSTEEKNESSPIY
                     LASMLEHDYLVRKDKNSIQLGGVMIGLALNSVYYYREKTGDPQKEVEIKDSTLRQQGE
                     KIAQEVINRLRKKDNLKNVPITVALYKQASKTSIVPGNFIAKTEVKAGSTDISNWDDI
                     NEKYVFYPADTTTAEKYPDDTEVFKRFKNSIEEYFPNYTGVVGTALYENDEMKKMKID
                     IPMQFYGKSEVVAFTQFLTGEVMDYYSKSSVDVEVNITSSDGQEAVIIRNAGDKEPTV
                     HIYD*"
                     /label="yerH CDS"
     gene            647860..649050
                     /gene="yerH"
                     /locus_tag="BSU_06630"
                     /old_locus_tag="BSU06630"
                     /label="yerH gene"
     misc_feature    complement(648055..648059)
                     /Source="Nicolas_upshift_promotors"
                     /id="U508"
                     /multdbtbs="-"
                     /comp="M13"
                     /sig="Sig-"
                     /pcomp="0.986013986013986"
                     /psig="0.000999000999001"
                     /xcortree=36
                     /SigmaFactorBS="atcagccctgtttcaaattcgtcaatgtccagccttgtattc
                     agctgttccgttgttaagCCGCGcgctttgcctgccttaaacggcagcaccattttgt
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_single_box"
                     /note="Geneious type: promotor_single_box"
     upshifts        complement(648059)
                     /Source="Nicolas_upshifts"
                     /id="U508"
                     /multdbtbs="-"
                     /comp="M13"
                     /sig="Sig-"
                     /pcomp="0.986013986013986"
                     /psig="0.000999000999001"
                     /xcortree=36
                     /SigmaFactorBS="atcagccctgtttcaaattcgtcaatgtccagccttgtattc
                     agctgttccgttgttaagCCGCGcgctttgcctgccttaaacggcagcaccattttgt
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     misc_feature    649087..649106
                     /Source="Nicolas_upshift_promotors"
                     /id="U509"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.971028971028971"
                     /psig=1
                     /xcortree=3168
                     /SigmaFactorBS="tcacatttatgactgatagaaaacccttgtgccatattggca
                     caagggttttTATGTTACAATTAACAGGAAaagggaaaatattttcacttctgccgaa
                     a"
                     /listShort="S234, yerI"
                     /GFF_Attribute="listLong"
                     /label="promotor_single_box"
                     /note="Geneious type: promotor_single_box"
     S_feature       649095..649211
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_724870_724986"
                     /HighExp="LoTm, B60, Lbstat, B36, BI, M9-stat, T1.30H,
                     ferm, T3.30H, M40t90"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA, SigA"
                     /TUshortPSig="1, 1"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S234"
     upshifts        649095
                     /Source="Nicolas_upshifts"
                     /id="U509"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.971028971028971"
                     /psig=1
                     /xcortree=3168
                     /SigmaFactorBS="tcacatttatgactgatagaaaacccttgtgccatattggca
                     caagggttttTATGTTACAATTAACAGGAAaagggaaaatattttcacttctgccgaa
                     a"
                     /listShort="S234, yerI"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     downshifts      complement(649159)
                     /Source="Nicolas_upshifts"
                     /id="D327"
                     /incds=0
                     /nref=2
                     /ntot=118
                     /MaxReadThrough="1.21197"
                     /MaxDrop="3.77048"
                     /score="18.5253059"
                     /energy="-17.7"
                     /TU="NA"
                     /idTUdmin="U511"
                     /TUdmin=1122
                     /isTUend="FALSE"
                     /label="downshifts"
     CDS             649212..650222
                     /gene="yerI"
                     /locus_tag="BSU_06640"
                     /old_locus_tag="BSU06640"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative kinase"
                     /protein_id="NP_388546.1"
                     /db_xref="EnsemblGenomes-Gn:BSU06640"
                     /db_xref="EnsemblGenomes-Tr:CAB12484"
                     /db_xref="InterPro:IPR002575"
                     /db_xref="InterPro:IPR011009"
                     /db_xref="SubtiList:BG12837"
                     /db_xref="UniProtKB/Swiss-Prot:O34640"
                     /translation="MLDVHKDIKKIFHEEQVLAEAAARYGFSKDQVRFLADAENYVYE
                     CMKDNQPYILKITHTIRRSSDYMMGEMEWLRHLAIGGISVAKPLPSLNGKDVEAVPDG
                     NGGSFLLRVYEKAPGQKVDESDWNETLFYELGRYTGSMHSLTKSYKLSNPAFKRQEWD
                     EEEQLKLRKYVPEDQIKVFQQADSLMNELRRLPKSQDNYGLVHADLHHGNFNWDHGKI
                     TAFDFDDIGYNWFVNDISILLYNVLWYPVVPYDDKAAFTEEFMTHFMKGYWEENELDP
                     AWLMIIPDFLRLRHMLIYGLLHQMFDLNTIGEEEKEMLAGFRRDIENGTPITAFDFSA
                     LV*"
                     /label="yerI CDS"
     gene            649212..650222
                     /gene="yerI"
                     /locus_tag="BSU_06640"
                     /old_locus_tag="BSU06640"
                     /label="yerI gene"
     promotor_no_box complement(649229..649329)
                     /Source="Nicolas_upshift_promotors"
                     /id="U510"
                     /multdbtbs="-"
                     /comp="M13"
                     /sig="Sig-"
                     /pcomp="0.993006993006993"
                     /psig=0
                     /xcortree=53
                     /SigmaFactorBS="tttccgcatcagccagaaaacgcacctgatcttttgagaaac
                     cgtatctcgctgcagcttctgccaaaacctgctcttcatgaaatatttttttgatatc
                     t"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_no_box"
     upshifts        complement(649269)
                     /Source="Nicolas_upshifts"
                     /id="U510"
                     /multdbtbs="-"
                     /comp="M13"
                     /sig="Sig-"
                     /pcomp="0.993006993006993"
                     /psig=0
                     /xcortree=53
                     /SigmaFactorBS="tttccgcatcagccagaaaacgcacctgatcttttgagaaac
                     cgtatctcgctgcagcttctgccaaaacctgctcttcatgaaatatttttttgatatc
                     t"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     downshifts      650205
                     /Source="Nicolas_upshifts"
                     /id="D328"
                     /incds=0
                     /nref=137
                     /ntot=253
                     /MaxReadThrough="3.07041"
                     /MaxDrop="5.10987"
                     /score="12.7441524"
                     /energy="-17"
                     /TU="NA"
                     /idTUdmin="U507"
                     /TUdmin=0
                     /isTUend="TRUE"
                     /label="downshifts"
     S_feature       650249..651053
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_726024_726828"
                     /HighExp="B60, B36, LoTm, M9-stat, Cold, T1.30H, T0.30H,
                     ferm, Lbstat, LBGstat"
                     /AntisenseName="sapB"
                     /AntisenseCor="-0.57665624439942198"
                     /AntisenseRegPval="-24.5"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="NA"
                     /TUshortPSig="NA"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S235"
     CDS             complement(650260..650958)
                     /gene="sapB"
                     /locus_tag="BSU_06650"
                     /old_locus_tag="BSU06650"
                     /function="16.1: Circulate"
                     /function="16.8: Protect"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 410907, 9043134,
                     14708580, 27350030, 28181542; Product type t :
                     transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="putative magnesium transporter"
                     /protein_id="NP_388547.1"
                     /db_xref="EnsemblGenomes-Gn:BSU06650"
                     /db_xref="EnsemblGenomes-Tr:CAB12485"
                     /db_xref="GOA:Q45514"
                     /db_xref="InterPro:IPR003416"
                     /db_xref="SubtiList:BG11845"
                     /db_xref="UniProtKB/Swiss-Prot:Q45514"
                     /translation="MLLSWYIDPDILLKLGIATLIGMVIGLERELKNKPLGLKTCIVI
                     AVSSCMLTIVSINAAYHFPKYYRIMMDPLRLPAQIISGVGFIGAGVILRKSNDVISGL
                     TTSAMIWGAAGLGLATGAGFYKEAFASLLFILISVEFLPWVVRKIGPDRLQEKDIRIR
                     MSLSDKDKMTEILKEMKRRDIKAHSVRIDDLGEKDFPIMEVKVRVHKNRYTTDVYYDI
                     KAIEGVVGVKCDTL*"
                     /label="sapB CDS"
     gene            complement(650260..650958)
                     /gene="sapB"
                     /locus_tag="BSU_06650"
                     /old_locus_tag="BSU06650"
                     /label="sapB gene"
     downshifts      complement(650281)
                     /Source="Nicolas_upshifts"
                     /id="D329"
                     /incds=0
                     /nref=26
                     /ntot=129
                     /MaxReadThrough="2.5379"
                     /MaxDrop="3.83708"
                     /score="20.8493264"
                     /energy="-16.2"
                     /TU="NA"
                     /idTUdmin="U511"
                     /TUdmin=0
                     /isTUend="TRUE"
                     /label="downshifts"
     promotor_-10    complement(650978..650996)
                     /Source="Nicolas_upshift_promotors"
                     /id="U511"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.684315684315684"
                     /psig="0.684315684315684"
                     /xcortree=1465
                     /SigmaFactorBS="aagccatcaagcgcagcttggtggcttttgtgctcttgtttt
                     GCTATAaatactgtgagaaaaTCATATTTATTTAAAAACAccatagagaagggggaag
                     t"
                     /listShort="sapB"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(650999)
                     /Source="Nicolas_upshifts"
                     /id="U511"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.684315684315684"
                     /psig="0.684315684315684"
                     /xcortree=1465
                     /SigmaFactorBS="aagccatcaagcgcagcttggtggcttttgtgctcttgtttt
                     GCTATAaatactgtgagaaaaTCATATTTATTTAAAAACAccatagagaagggggaag
                     t"
                     /listShort="sapB"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(651012..651017)
                     /Source="Nicolas_upshift_promotors"
                     /id="U511"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.684315684315684"
                     /psig="0.684315684315684"
                     /xcortree=1465
                     /SigmaFactorBS="aagccatcaagcgcagcttggtggcttttgtgctcttgtttt
                     GCTATAaatactgtgagaaaaTCATATTTATTTAAAAACAccatagagaagggggaag
                     t"
                     /listShort="sapB"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             complement(651065..652543)
                     /gene="opuE"
                     /locus_tag="BSU_06660"
                     /old_locus_tag="BSU06660"
                     /function="16.8: Protect"
                     /function="16.1: Circulate"
                     /experiment="publication(s) with functional evidences,
                     PMID:9701821, 11902719, 14996799, 15849754, 16850406,
                     17183215, 22685134"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 9701821, 11902719,
                     14996799, 15849754, 16850406, 17183215, 22685134; Product
                     type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="proline transporter"
                     /protein_id="NP_388548.1"
                     /db_xref="EnsemblGenomes-Gn:BSU06660"
                     /db_xref="EnsemblGenomes-Tr:CAB12486"
                     /db_xref="GOA:O06493"
                     /db_xref="InterPro:IPR001734"
                     /db_xref="InterPro:IPR011851"
                     /db_xref="InterPro:IPR018212"
                     /db_xref="SubtiList:BG12641"
                     /db_xref="UniProtKB/Swiss-Prot:O06493"
                     /translation="MSIEIIISLGIYFIAMLLIGWYAFKKTTDINDYMLGGRGLGPFV
                     TALSAGAADMSGWMLMGVPGAMFATGLSTLWLALGLTIGAYSNYLLLAPRLRAYTEAA
                     DDAITIPDFFDKRFQHSSSLLKIVSALIIMIFFTLYTSSGMVSGGRLFESAFGADYKL
                     GLFLTTAVVVLYTLFGGFLAVSLTDFVQGAIMFAALVLVPIVAFTHVGGVAPTFHEID
                     AVNPHLLDIFKGASVISIISYLAWGLGYYGQPHIIVRFMAIKDIKDLKPARRIGMSWM
                     IITVLGSVLTGLIGVAYAHKFGVAVKDPEMIFIIFSKILFHPLITGFLLSAILAAIMS
                     SISSQLLVTASAVTEDLYRSFFRRKASDKELVMIGRLSVLVIAVIAVLLSLNPNSTIL
                     DLVGYAWAGFGSAFGPAILLSLYWKRMNEWGALAAMIVGAATVLIWITTGLAKSTGVY
                     EIIPGFILSMIAGIIVSMITKRPAKASYRLFGVMEKLLKRKK*"
                     /label="opuE CDS"
     gene            complement(651065..652543)
                     /gene="opuE"
                     /locus_tag="BSU_06660"
                     /old_locus_tag="BSU06660"
                     /label="opuE gene"
     downshifts      complement(651079)
                     /Source="Nicolas_upshifts"
                     /id="D330"
                     /incds=0
                     /nref=43
                     /ntot=142
                     /MaxReadThrough="5.35634"
                     /MaxDrop="4.34381"
                     /score="9.43100511"
                     /energy="-13.8"
                     /TU="U512,U513"
                     /idTUdmin="U511"
                     /TUdmin="-798"
                     /isTUend="FALSE"
                     /label="downshifts"
     upshifts        complement(651931)
                     /Source="Nicolas_upshifts"
                     /id="U512"
                     /multdbtbs="-"
                     /comp="M18"
                     /sig="Sig-"
                     /pcomp="0.475524475524476"
                     /psig="0.475524475524476"
                     /xcortree=138
                     /SigmaFactorBS="gacttcgtgcagggtgcgatcatgtttgcagcactagtgctt
                     gtGCCGATCGTTGCTTttacccatgtgggcggcgttgctccgactttccatgaaatcg
                     a"
                     /listShort="sapB"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     misc_feature    complement(651934..651947)
                     /Source="Nicolas_upshift_promotors"
                     /id="U512"
                     /multdbtbs="-"
                     /comp="M18"
                     /sig="Sig-"
                     /pcomp="0.475524475524476"
                     /psig="0.475524475524476"
                     /xcortree=138
                     /SigmaFactorBS="gacttcgtgcagggtgcgatcatgtttgcagcactagtgctt
                     gtGCCGATCGTTGCTTttacccatgtgggcggcgttgctccgactttccatgaaatcg
                     a"
                     /listShort="sapB"
                     /GFF_Attribute="listLong"
                     /label="promotor_single_box"
                     /note="Geneious type: promotor_single_box"
     S_feature       complement(652544..652674)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_728319_728449_c"
                     /HighExp="Salt, HiOs, Etha, Gly, MG 25, MG 45, M9-exp, MG
                     t5, MG 15, GM 5"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigB"
                     /TUshortPSig="0.954"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S236"
     promotor_-10    complement(652665..652683)
                     /Source="Nicolas_upshift_promotors"
                     /id="U513"
                     /multdbtbs="SigA,SigB"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp="0.954045954045954"
                     /psig="0.954045954045954"
                     /xcortree=137
                     /SigmaFactorBS="tttgcaacggtatttccagcttatgatcaaTGTTTCAtcgct
                     tgaatggccGGGAATACTTTGTTAGGTTaagttaccaagtgcacccgcaaaagaattt
                     c"
                     /listShort="S236, opuE, sapB"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(652674)
                     /Source="Nicolas_upshifts"
                     /id="U513"
                     /multdbtbs="SigA,SigB"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp="0.954045954045954"
                     /psig="0.954045954045954"
                     /xcortree=137
                     /SigmaFactorBS="tttgcaacggtatttccagcttatgatcaaTGTTTCAtcgct
                     tgaatggccGGGAATACTTTGTTAGGTTaagttaccaagtgcacccgcaaaagaattt
                     c"
                     /listShort="S236, opuE, sapB"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(652698..652704)
                     /Source="Nicolas_upshift_promotors"
                     /id="U513"
                     /multdbtbs="SigA,SigB"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp="0.954045954045954"
                     /psig="0.954045954045954"
                     /xcortree=137
                     /SigmaFactorBS="tttgcaacggtatttccagcttatgatcaaTGTTTCAtcgct
                     tgaatggccGGGAATACTTTGTTAGGTTaagttaccaagtgcacccgcaaaagaattt
                     c"
                     /listShort="S236, opuE, sapB"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-35    652805..652808
                     /Source="Nicolas_upshift_promotors"
                     /id="U514"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.88011988011988"
                     /psig="0.999000999001"
                     /xcortree=2562
                     /SigmaFactorBS="ttcaaaaaataattaaagtaaaaatattcagaaaaatatttc
                     GTTTctccttctcctcatttTAGTATAAAATATATAGGGTattgtttcgaaaacacag
                     g"
                     /listShort="S237, gatC, gatA, gatB"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     S_feature       652823..652956
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_728598_728731"
                     /HighExp="G180, G150, LBGexp, Oxctl, Paraq, dia0, G135,
                     Lbexp, H2O2, LBGtran"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.999"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S237"
     upshifts        652823
                     /Source="Nicolas_upshifts"
                     /id="U514"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.88011988011988"
                     /psig="0.999000999001"
                     /xcortree=2562
                     /SigmaFactorBS="ttcaaaaaataattaaagtaaaaatattcagaaaaatatttc
                     GTTTctccttctcctcatttTAGTATAAAATATATAGGGTattgtttcgaaaacacag
                     g"
                     /listShort="S237, gatC, gatA, gatB"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-10    652825..652844
                     /Source="Nicolas_upshift_promotors"
                     /id="U514"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.88011988011988"
                     /psig="0.999000999001"
                     /xcortree=2562
                     /SigmaFactorBS="ttcaaaaaataattaaagtaaaaatattcagaaaaatatttc
                     GTTTctccttctcctcatttTAGTATAAAATATATAGGGTattgtttcgaaaacacag
                     g"
                     /listShort="S237, gatC, gatA, gatB"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     CDS             652957..653247
                     /gene="gatC"
                     /locus_tag="BSU_06670"
                     /old_locus_tag="BSU06670"
                     /EC_number="6.3.5.7"
                     /function="16.2: Construct biomass (Anabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:9342321, 11445070, 12682299, 25005615"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 9342321, 11445070,
                     12682299, 25005615; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamyl-tRNA(Gln) amidotransferase (subunit C)"
                     /protein_id="NP_388549.1"
                     /db_xref="EnsemblGenomes-Gn:BSU06670"
                     /db_xref="EnsemblGenomes-Tr:CAB12487"
                     /db_xref="GOA:O06492"
                     /db_xref="InterPro:IPR003837"
                     /db_xref="InterPro:IPR036113"
                     /db_xref="SubtiList:BG12838"
                     /db_xref="UniProtKB/Swiss-Prot:O06492"
                     /translation="MSRISIEEVKHVAHLARLAITEEEAKMFTEQLDSIISFAEELNE
                     VNTDNVEPTTHVLKMKNVMREDEAGKGLPVEDVMKNAPDHKDGYIRVPSILD*"
                     /label="gatC CDS"
     gene            652957..653247
                     /gene="gatC"
                     /locus_tag="BSU_06670"
                     /old_locus_tag="BSU06670"
                     /label="gatC gene"
     CDS             653263..654720
                     /gene="gatA"
                     /locus_tag="BSU_06680"
                     /old_locus_tag="BSU06680"
                     /EC_number="6.3.5.7"
                     /function="16.2: Construct biomass (Anabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:11445070, 12682299, 9342321"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 11445070, 12682299,
                     9342321; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamyl-tRNA(Gln) amidotransferase (subunit A)"
                     /protein_id="NP_388550.1"
                     /db_xref="EnsemblGenomes-Gn:BSU06680"
                     /db_xref="EnsemblGenomes-Tr:CAB12488"
                     /db_xref="GOA:O06491"
                     /db_xref="InterPro:IPR000120"
                     /db_xref="InterPro:IPR004412"
                     /db_xref="InterPro:IPR020556"
                     /db_xref="InterPro:IPR023631"
                     /db_xref="InterPro:IPR036928"
                     /db_xref="SubtiList:BG12839"
                     /db_xref="UniProtKB/Swiss-Prot:O06491"
                     /translation="MSLFDHKITELKQLIHKKEIKISDLVDESYKRIQAVDDKVQAFL
                     ALDEERARAYAKELDEAVDGRSEHGLLFGMPIGVKDNIVTKGLRTTCSSKILENFDPI
                     YDATVVQRLQDAEAVTIGKLNMDEFAMGSSTENSAYKLTKNPWNLDTVPGGSSGGSAA
                     AVAAGEVPFSLGSDTGGSIRQPASFCGVVGLKPTYGRVSRYGLVAFASSLDQIGPITR
                     TVEDNAFLLQAISGVDKMDSTSANVDVPDFLSSLTGDIKGLKIAVPKEYLGEGVGKEA
                     RESVLAALKVLEGLGATWEEVSLPHSKYALATYYLLSSSEASANLARFDGIRYGYRTD
                     NADNLIDLYKQTRAEGFGNEVKRRIMLGTFALSSGYYDAYYKKAQKVRTLIKKDFEDV
                     FEKYDVIVGPTTPTPAFKIGENTKDPLTMYANDILTIPVNLAGVPGISVPCGLADGLP
                     LGLQIIGKHFDESTVYRVAHAFEQATDHHKAKPEL*"
                     /label="gatA CDS"
     gene            653263..654720
                     /gene="gatA"
                     /locus_tag="BSU_06680"
                     /old_locus_tag="BSU06680"
                     /label="gatA gene"
     CDS             654734..656164
                     /gene="gatB"
                     /locus_tag="BSU_06690"
                     /old_locus_tag="BSU06690"
                     /EC_number="6.3.5.7"
                     /function="16.2: Construct biomass (Anabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:11445070, 12682299, 9342321"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 11445070, 12682299,
                     9342321; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamyl-tRNA(Gln) amidotransferase (subunit B)"
                     /protein_id="NP_388551.2"
                     /db_xref="EnsemblGenomes-Gn:BSU06690"
                     /db_xref="EnsemblGenomes-Tr:CAB12489"
                     /db_xref="GOA:O30509"
                     /db_xref="InterPro:IPR003789"
                     /db_xref="InterPro:IPR004413"
                     /db_xref="InterPro:IPR006075"
                     /db_xref="InterPro:IPR014746"
                     /db_xref="InterPro:IPR017958"
                     /db_xref="InterPro:IPR017959"
                     /db_xref="InterPro:IPR018027"
                     /db_xref="InterPro:IPR023168"
                     /db_xref="SubtiList:BG12840"
                     /db_xref="UniProtKB/Swiss-Prot:O30509"
                     /translation="MNFETVIGLEVHVELKTKSKIFSSSPTPFGAEANTQTSVIDLGY
                     PGVLPVLNKEAVEFAMKAAMALNCEIATDTKFDRKNYFYPDNPKAYQISQFDKPIGEN
                     GWIEIEVGGKTKRIGITRLHLEEDAGKLTHTGDGYSLVDFNRQGTPLVEIVSEPDIRT
                     PEEAYAYLEKLKSIIQYTGVSDCKMEEGSLRCDANISLRPIGQEEFGTKTELKNLNSF
                     AFVQKGLEHEEKRQEQVLLSGGVIQQETRRYDEATKKTILMRVKEGSDDYRYFPEPDL
                     VELYIDDEWKERVKASIPELPDERRKRYIEELGLPAYDAMVLTLTKEMADFFEETVQK
                     GAEAKQASNWLMGEVSAYLNAEQKELADVALTPEGLAGMIKLIEKGTISSKIAKKVFK
                     ELIEKGGDAEKIVKEKGLVQISDEGVLLKLVTEALDNNPQSIEDFKNGKDRAIGFLVG
                     QIMKASKGQANPPMVNKILLEEIKKR*"
                     /label="gatB CDS"
     gene            654734..656164
                     /gene="gatB"
                     /locus_tag="BSU_06690"
                     /old_locus_tag="BSU06690"
                     /label="gatB gene"
     downshifts      656145
                     /Source="Nicolas_upshifts"
                     /id="D331"
                     /incds=0
                     /nref=257
                     /ntot=266
                     /MaxReadThrough="1.62334"
                     /MaxDrop="8.77378"
                     /score="26.1218607"
                     /energy="-9.6"
                     /TU="NA"
                     /idTUdmin="U514"
                     /TUdmin=0
                     /isTUend="TRUE"
                     /label="downshifts"
     CDS             complement(656179..657048)
                     /gene="yerO"
                     /locus_tag="BSU_06700"
                     /old_locus_tag="BSU06700"
                     /function="16.3: Control"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; Product type r: regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="putative transcriptional regulator (TetR/AcrR
                     family)"
                     /protein_id="NP_388552.1"
                     /db_xref="EnsemblGenomes-Gn:BSU06700"
                     /db_xref="EnsemblGenomes-Tr:CAB12490"
                     /db_xref="GOA:O31500"
                     /db_xref="InterPro:IPR001647"
                     /db_xref="InterPro:IPR009057"
                     /db_xref="InterPro:IPR023772"
                     /db_xref="SubtiList:BG12841"
                     /db_xref="UniProtKB/Swiss-Prot:O31500"
                     /translation="MNEKKERIIKTSIRLFAKKGFAATTIQEIASECGISKGAFYLHF
                     KSKEALLLSACEYYIGMSMNKMKNIEEDLAGKPPKEVLKKQIGAQFEDFRDHKDFIVL
                     LLTENIIPENQEIKQYFYKVTMETDKLYRNALLVSYGEGIERYVADLSIMARGIVHSY
                     MNVMVFNGELNIDAEEISAFIIERLDDLVQGLSRSALNPIVSKDIFNPMPAGKDQLLE
                     DIQKVKENSTLPEDITVSLDVIEEELTQDKPRKPIIKGMLSNLAGTNDKEVERLRALI
                     LSLSQFDHKKSSL*"
                     /label="yerO CDS"
     gene            complement(656179..657048)
                     /gene="yerO"
                     /locus_tag="BSU_06700"
                     /old_locus_tag="BSU06700"
                     /label="yerO gene"
     downshifts      complement(656221)
                     /Source="Nicolas_upshifts"
                     /id="D332"
                     /incds=0
                     /nref=122
                     /ntot=211
                     /MaxReadThrough="2.21801"
                     /MaxDrop="4.89305"
                     /score="32.2694333"
                     /energy="-11.4"
                     /TU="NA"
                     /idTUdmin="U517"
                     /TUdmin=0
                     /isTUend="TRUE"
                     /label="downshifts"
     promotor_-35    656838..656843
                     /Source="Nicolas_upshift_promotors"
                     /id="U515"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.822177822177822"
                     /psig="0.822177822177822"
                     /xcortree=1398
                     /SigmaFactorBS="ccttaggcggctttccggcgagatcttCTTCTAtatttttca
                     ttttgtTCATAGACATACCGATATAatattcacaggcagataacagcagcgcttcttt
                     c"
                     /GFF_Attribute="listShort"
                     /listLong="swrC"
                     /label="promotor_-35"
     promotor_-10    656859..656877
                     /Source="Nicolas_upshift_promotors"
                     /id="U515"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.822177822177822"
                     /psig="0.822177822177822"
                     /xcortree=1398
                     /SigmaFactorBS="ccttaggcggctttccggcgagatcttCTTCTAtatttttca
                     ttttgtTCATAGACATACCGATATAatattcacaggcagataacagcagcgcttcttt
                     c"
                     /GFF_Attribute="listShort"
                     /listLong="swrC"
                     /label="promotor_-10"
     upshifts        656871
                     /Source="Nicolas_upshifts"
                     /id="U515"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.822177822177822"
                     /psig="0.822177822177822"
                     /xcortree=1398
                     /SigmaFactorBS="ccttaggcggctttccggcgagatcttCTTCTAtatttttca
                     ttttgtTCATAGACATACCGATATAatattcacaggcagataacagcagcgcttcttt
                     c"
                     /GFF_Attribute="listShort"
                     /listLong="swrC"
                     /label="upshifts"
     S_feature       complement(657049..657123)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_732824_732898_c"
                     /HighExp="C30, S1, T3.0H, T4.0H, Salt, T5.0H, T2.0H,
                     T3.30H, MG 150, T2.30H"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig=1
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S238"
     promotor_-35    657101..657108
                     /Source="Nicolas_upshift_promotors"
                     /id="U516"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.679320679320679"
                     /psig="0.998001998001998"
                     /xcortree=3014
                     /SigmaFactorBS="taatccttgaaaaatttagtaaaattttctggtatatgAGTT
                     GACGttgttgcgttataacGTTTAGTATTATATAGAATGaccagtcagtcaataaaaa
                     a"
                     /listShort="swrC"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    complement(657117..657136)
                     /Source="Nicolas_upshift_promotors"
                     /id="U517"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.995004995004995"
                     /psig=1
                     /xcortree=3036
                     /SigmaFactorBS="acgtggttcatcatatcctccattacatttttTATTGACTga
                     ctggtcattctaTATAATACTAAACGTTATAAcgcaacaacgtcaactcatataccag
                     a"
                     /listShort="S238, yerO"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        657123
                     /Source="Nicolas_upshifts"
                     /id="U516"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.679320679320679"
                     /psig="0.998001998001998"
                     /xcortree=3014
                     /SigmaFactorBS="taatccttgaaaaatttagtaaaattttctggtatatgAGTT
                     GACGttgttgcgttataacGTTTAGTATTATATAGAATGaccagtcagtcaataaaaa
                     a"
                     /listShort="swrC"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-10    657124..657143
                     /Source="Nicolas_upshift_promotors"
                     /id="U516"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.679320679320679"
                     /psig="0.998001998001998"
                     /xcortree=3014
                     /SigmaFactorBS="taatccttgaaaaatttagtaaaattttctggtatatgAGTT
                     GACGttgttgcgttataacGTTTAGTATTATATAGAATGaccagtcagtcaataaaaa
                     a"
                     /listShort="swrC"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(657130)
                     /Source="Nicolas_upshifts"
                     /id="U517"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.995004995004995"
                     /psig=1
                     /xcortree=3036
                     /SigmaFactorBS="acgtggttcatcatatcctccattacatttttTATTGACTga
                     ctggtcattctaTATAATACTAAACGTTATAAcgcaacaacgtcaactcatataccag
                     a"
                     /listShort="S238, yerO"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(657151..657158)
                     /Source="Nicolas_upshift_promotors"
                     /id="U517"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.995004995004995"
                     /psig=1
                     /xcortree=3036
                     /SigmaFactorBS="acgtggttcatcatatcctccattacatttttTATTGACTga
                     ctggtcattctaTATAATACTAAACGTTATAAcgcaacaacgtcaactcatataccag
                     a"
                     /listShort="S238, yerO"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             657180..660338
                     /gene="srfP"
                     /locus_tag="BSU_06710"
                     /old_locus_tag="BSU06710"
                     /function="16.1: Circulate"
                     /function="16.8: Protect"
                     /experiment="publication(s) with functional evidences,
                     PMID:11709341, 15066026, 15941986, 25366377"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 11709341, 15066026,
                     15941986, 25366377; Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="surfactin exporter involved in surfactin
                     self-resistance"
                     /protein_id="NP_388553.2"
                     /db_xref="EnsemblGenomes-Gn:BSU06710"
                     /db_xref="EnsemblGenomes-Tr:CAB12491"
                     /db_xref="GOA:O31501"
                     /db_xref="InterPro:IPR001036"
                     /db_xref="InterPro:IPR027463"
                     /db_xref="SubtiList:BG12842"
                     /db_xref="UniProtKB/Swiss-Prot:O31501"
                     /translation="MNHVINFVLKNKFAVWLMTIIVTAAGLYAGMNMKQESIPDVNMP
                     YLTISTTYPGATPSQVADEVTKPVEQAVQNLDGVSVVTSTSYENASSVMIEYDYEKDM
                     DKAKTEAAEALENVNLPDDAKDPEISRYSLNSFPILTLSVSSDKDNLQELTKQVEDSL
                     VSKLEGIEGVASVQVSGQQVEEVEFSFKEDKLKEYGLDEDTVKQVIQGSDVTTPLGLY
                     TFGNEEKSVVVSGDIETIKDLKNMRIPTASASSAGSSAASQAGAQSAQAAQSAQAAAQ
                     VQQSASTAVPTVKLSDIATIKDVKKAESVSRTNGKDSIGINIVKANDANTVEVADDVK
                     AELKKFKEDHKGFNYSATLDMAEPITQSVDTMLSKAIFGAIFAIVIILLFLRDIKSTL
                     ISVVSIPLSLLIALLVLQQLDITLNIMTLGAMTVAIGRVVDDSIVVIENIYRRMRLKD
                     EPLRGKALVREATKEMFKPIMSSTIVTIAVFLPLALVGGQIGELFIPFALTIVFALAA
                     SLVISITLVPMLAHSLFKKSLTGAPIKAKEHKPGRLANIYKKVLNWALSHKWITSIIA
                     VLMLLGSLFLVPLIGASYLPSEEEKTMQLTYSPEPGETKKEAENEAEKAEKILLDRKH
                     VDTVQYSLGSGSPLAGGDSNGALFYIKYESDTPDFDKEKDNVLKEIQKQSDRGEWKSQ
                     DFSSSGNNNELTYYVYGDSENDIKDTVKDIEKIMKDEKDLKNVNSGLSSTYDEYTFVA
                     DQEKLSKLGLTASQISQALMSQTSQEPLTTVKKDGKELDVNIKTEKDEYKSVKDLENK
                     KITSATGQEVKIGDVAKVKEGSTSDTVSKRDGKVYADVTGEVTSDNVTAVSAAIQKKI
                     DKLDHPDNVSIDTGGVSADIADSFTKLGLAMLAAIAIVYLVLVITFGGALAPFAILFS
                     LPFTVIGALVGLYVSGETISLNAMIGMLMLIGIVVTNAIVLIDRVIHKEAEGLSTREA
                     LLEAGSTRLRPILMTAIATIGALIPLALGFEGGSQVISKGLGVTVIGGLISSTLLTLL
                     IVPIVYEVLAKFRKKKPGTEEE*"
                     /label="srfP CDS"
     gene            657180..660338
                     /gene="srfP"
                     /locus_tag="BSU_06710"
                     /old_locus_tag="BSU06710"
                     /label="srfP gene"
     downshifts      660325
                     /Source="Nicolas_upshifts"
                     /id="D333"
                     /incds=0
                     /nref=76
                     /ntot=243
                     /MaxReadThrough="3.70478"
                     /MaxDrop="4.6624"
                     /score="-3.65521193"
                     /energy="-12.7"
                     /TU="U516"
                     /idTUdmin="U516"
                     /TUdmin="-110"
                     /isTUend="FALSE"
                     /label="downshifts"
     promotor_-35    660577..660580
                     /Source="Nicolas_upshift_promotors"
                     /id="U518"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.758241758241758"
                     /psig="0.999000999001"
                     /xcortree=2594
                     /SigmaFactorBS="tgtgcgttttcacctgtaagattatgtacattttGTTGcgat
                     ttttttaactCATAGTATAATTAAAGGTTGttagtgtaaaaatggatcggatactctt
                     a"
                     /listShort="dagK, S239, yefA, S240, S241, yefC, S242,
                     yeeA, yeeB, S243, yeeC, S244"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    660595..660614
                     /Source="Nicolas_upshift_promotors"
                     /id="U518"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.758241758241758"
                     /psig="0.999000999001"
                     /xcortree=2594
                     /SigmaFactorBS="tgtgcgttttcacctgtaagattatgtacattttGTTGcgat
                     ttttttaactCATAGTATAATTAAAGGTTGttagtgtaaaaatggatcggatactctt
                     a"
                     /listShort="dagK, S239, yefA, S240, S241, yefC, S242,
                     yeeA, yeeB, S243, yeeC, S244"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        660603
                     /Source="Nicolas_upshifts"
                     /id="U518"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.758241758241758"
                     /psig="0.999000999001"
                     /xcortree=2594
                     /SigmaFactorBS="tgtgcgttttcacctgtaagattatgtacattttGTTGcgat
                     ttttttaactCATAGTATAATTAAAGGTTGttagtgtaaaaatggatcggatactctt
                     a"
                     /listShort="dagK, S239, yefA, S240, S241, yefC, S242,
                     yeeA, yeeB, S243, yeeC, S244"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             660661..661572
                     /gene="dagK"
                     /locus_tag="BSU_06720"
                     /old_locus_tag="BSU06720"
                     /EC_number="2.7.1.107"
                     /function="16.6: Maintain"
                     /function="16.2: Construct biomass (Anabolism)"
                     /function="16.8: Protect"
                     /experiment="publication(s) with functional evidences,
                     PMID:10220166, 12682299, 17535816, 22224599, 24700682"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 10220166, 12682299,
                     17535816, 22224599, 24700682; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="diacylglycerol kinase"
                     /protein_id="NP_388554.1"
                     /db_xref="EnsemblGenomes-Gn:BSU06720"
                     /db_xref="EnsemblGenomes-Tr:CAB12492"
                     /db_xref="GOA:O31502"
                     /db_xref="InterPro:IPR001206"
                     /db_xref="InterPro:IPR005218"
                     /db_xref="InterPro:IPR016064"
                     /db_xref="InterPro:IPR017438"
                     /db_xref="SubtiList:BG12843"
                     /db_xref="UniProtKB/Swiss-Prot:O31502"
                     /translation="MKRARIIYNPTSGREIFKKHLAQVLQKFEQAGYETSTHATTCAG
                     DATHAAKEAALREFDLIIAAGGDGTINEVVNGLAPLDNRPTLGVIPVGTTNDFARALG
                     IPREDILKAADTVINGVARPIDIGQVNGQYFINIAGGGRLTELTYDVPSKLKTMLGQL
                     AYYLKGMEMLPSLRPTEVEIEYDGKLFQGEIMLFLVTLTNSVGGFEKLAPDSSLNDGM
                     FDLMILKKANLAEFIRVATMALRGEHINDQHIIYTKANRVKVNVSEKMQLNLDGEYGG
                     MLPGEFVNLYRHIHVVMPKEKAEQLDD*"
                     /label="dagK CDS"
     gene            660661..661572
                     /gene="dagK"
                     /locus_tag="BSU_06720"
                     /old_locus_tag="BSU06720"
                     /label="dagK gene"
     S_feature       661573..661827
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_737348_737602"
                     /HighExp="H2O2, Oxctl, Paraq, G180, Cold, C30, G150, G135,
                     Heat, LBGstat"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.999"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S239"
     CDS             661828..663207
                     /gene="rlmCD"
                     /locus_tag="BSU_06730"
                     /old_locus_tag="BSU06730"
                     /EC_number="2.1.1.189"
                     /EC_number="2.1.1.190"
                     /function="16.8: Protect"
                     /function="16.6: Maintain"
                     /experiment="publication(s) with functional evidences,
                     PMID:21824914"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 21824914; Product type e:
                     enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="methyltransferase of m5U747 and m5U1939 in 23S
                     RNA"
                     /protein_id="NP_388555.1"
                     /db_xref="EnsemblGenomes-Gn:BSU06730"
                     /db_xref="EnsemblGenomes-Tr:CAB12493"
                     /db_xref="GOA:O31503"
                     /db_xref="InterPro:IPR001566"
                     /db_xref="InterPro:IPR002792"
                     /db_xref="InterPro:IPR010280"
                     /db_xref="InterPro:IPR012340"
                     /db_xref="InterPro:IPR029063"
                     /db_xref="InterPro:IPR030390"
                     /db_xref="InterPro:IPR030391"
                     /db_xref="SubtiList:BG12826"
                     /db_xref="UniProtKB/Swiss-Prot:O31503"
                     /translation="MKMKPPVEKNEYYDVTFEDLTHEGAGVAKVQGFPIFVPNALPEE
                     KAQIKVTRVKKGFAFGRLIELKEESPHRTDAPCPIYKQCGGCQLQHMTYEGQLLFKQK
                     QVKDVLERIGKLDLSKVTVHPTLGMEDPWNYRNKAQVPVGEREGGLVAGFYQQRSHDI
                     IDMSACLIQQSKNDEAVQAVKDICANYGVKAYNEERHKGWLRHIMVRYGVVTGEMMIV
                     FITRTSDFPHKAKIIEDITAQFPHVKSIVQNINPNKTNVIFGNETNVIWGEEYIYDLI
                     GDVKFAISARSFYQVNPEQTKVLYDKALEYAELQGEETVIDAYCGIGTISLFLAKQAK
                     KVYGVEIVPEAIEDAKRNAELNGNTNAEFAVGEAETVIPKWYEEGITADTLVVDPPRK
                     GCDEALLRTIVEMKPKRVVYVSCNPGTLARDLRVLEDGGYVTREVQPVDMFPHTNHVE
                     CCVLIKLKE*"
                     /label="rlmCD CDS"
     gene            661828..663207
                     /gene="rlmCD"
                     /locus_tag="BSU_06730"
                     /old_locus_tag="BSU06730"
                     /label="rlmCD gene"
     S_feature       663208..663800
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_738983_739575"
                     /HighExp="Cold, H2O2, G135, G150, Oxctl, G180, C30, Paraq,
                     LPh, HPh"
                     /AntisenseName="yefB"
                     /AntisenseCor="0.24913678485492899"
                     /AntisenseRegPval="-4.4000000000000004"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.999"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S240"
     CDS             complement(663220..664122)
                     /gene="yefB"
                     /locus_tag="BSU_06740"
                     /old_locus_tag="BSU06740"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 1779754, 1762151;
                     Product type h: extrachromosomal origin"
                     /codon_start=1
                     /transl_table=11
                     /product="putative site-specific recombinase / invertase;
                     HGT island"
                     /protein_id="NP_388556.1"
                     /db_xref="EnsemblGenomes-Gn:BSU06740"
                     /db_xref="EnsemblGenomes-Tr:CAB12494"
                     /db_xref="GOA:O34574"
                     /db_xref="InterPro:IPR011109"
                     /db_xref="InterPro:IPR025827"
                     /db_xref="SubtiList:BG12827"
                     /db_xref="UniProtKB/Swiss-Prot:O34574"
                     /translation="MYNEGVTSPSQLARKKNATDKWHGSSIRKILENPHYTGTLQQCR
                     EYRPSVTSKRRRSVNLENQIIIEKSHEPIIPLEDFLIVQEILITRKRRRPQAEVHLFT
                     NTAVCKDCRRSMHFKKNRKGYVCGSYNKHGLKACSDHYVSEIDLTDKVITNLNKIYLK
                     FSKENYFKELSEKALKYKEKIESKIIEINEKLNDKKRDKSNLVISLANGVISKEDYQL
                     AINITNEDISNFETTLHQLSKDLEFQKIEKEIIDFKKSLDKFMKEGTLTPEMLHLLVD
                     EIEVHANGTIEINYRFREPTVPSA*"
                     /label="yefB CDS"
     gene            complement(663220..664122)
                     /gene="yefB"
                     /locus_tag="BSU_06740"
                     /old_locus_tag="BSU06740"
                     /label="yefB gene"
     downshifts      663757
                     /Source="Nicolas_upshifts"
                     /id="D334"
                     /incds=1
                     /nref=1
                     /ntot=30
                     /MaxReadThrough="4.70474"
                     /MaxDrop="2.82299"
                     /score="-8.81916201"
                     /energy="-8.8"
                     /TU="U518"
                     /idTUdmin="U516"
                     /TUdmin=3322
                     /isTUend="FALSE"
                     /label="downshifts"
     S_feature       663802..664102
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_739577_739877"
                     /HighExp="H2O2, Cold, G180, G135, G150, Paraq, Oxctl, C30,
                     LPh, LBGexp"
                     /AntisenseName="yefB"
                     /AntisenseCor="0.202214664414261"
                     /AntisenseRegPval="-3.1"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.999"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S241"
     CDS             664103..664438
                     /gene="yefC"
                     /locus_tag="BSU_06750"
                     /old_locus_tag="BSU06750"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative resolvase; HGT island"
                     /protein_id="NP_388557.2"
                     /db_xref="EnsemblGenomes-Gn:BSU06750"
                     /db_xref="EnsemblGenomes-Tr:CAB12495"
                     /db_xref="GOA:O35034"
                     /db_xref="InterPro:IPR006119"
                     /db_xref="InterPro:IPR009057"
                     /db_xref="InterPro:IPR036162"
                     /db_xref="SubtiList:BG12828"
                     /db_xref="UniProtKB/Swiss-Prot:O35034"
                     /translation="MTPSLYNPLAIASKPFPAIYSEKILIFTIFSAFAEFERDMIVER
                     TQEGKMLAKQNPDFREGRPKKFTKQQINHALTLLENHSYKQVEDMTGISVSTLVRAKK
                     KKAAEAING*"
                     /label="yefC CDS"
     gene            664103..664438
                     /gene="yefC"
                     /locus_tag="BSU_06750"
                     /old_locus_tag="BSU06750"
                     /label="yefC gene"
     S_feature       664439..664512
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_740214_740287"
                     /HighExp="G180, H2O2, G150, Cold, G135, Paraq, Oxctl, C30,
                     LPh, dia0"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.999"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S242"
     CDS             664513..667152
                     /gene="yeeA"
                     /locus_tag="BSU_06760"
                     /old_locus_tag="BSU06760"
                     /function="16.8: Protect"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative restriction type II methylase; HGT
                     island"
                     /protein_id="NP_388558.1"
                     /db_xref="EnsemblGenomes-Gn:BSU06760"
                     /db_xref="EnsemblGenomes-Tr:CAB12496"
                     /db_xref="GOA:O31504"
                     /db_xref="InterPro:IPR029063"
                     /db_xref="SubtiList:BG12818"
                     /db_xref="UniProtKB/Swiss-Prot:O31504"
                     /translation="MALIDLEDKIAEIVNREDHSDFLYELLGVYDVPRATITRLKKGN
                     QNLTKRVGEVHLKNKVWFKEAKKGKLFDALIDIEQQVEYLSAKPRYLLVTDYDGVLAK
                     DTKTLEALDVKFEELPQYFDFFLAWKGIEKVEFEKENPADIKAAERFARIYDVLRKEN
                     NIIETNRGLDLFLIRLLFCFFAEDTDIFKRNSFTNLIKTLTEEDGSNLNKLFADLFIV
                     LDKNERDDVPSYLKEFPYVNGQLFTEPHTELEFSAKSRKLIIECGELLNWAKINPDIF
                     GSMIQAVASEESRSYLGMHYTSVPNIMKVIKPLFLDKLNQSFLDAYDDYTKLENLLTR
                     IGKIKFFDPACGSGNFLIITYKELRRMEINIIKRLQELLGEYLYVPSVTLSQFYGIEI
                     EDFAHDVAKLSLWIAEHQMNEELKNEVHNAVRPTLPLHTAGDIRCANAIRVEWTEVCP
                     AQGSEEVYVFGNPPYLGSKKQNKEHKSDMLSIFGKVKNGKMLDYISAWFYFGAKYAST
                     TNAKVAFVSTNSVTQGEQVSILWNELFKFGIQINFAYKSFKWANNAKNNAAVIVVIVG
                     FGPLDTKVNKYLFVDETKKLVSNISPYLTDGENILVSSRTKPISDLPKLHFGNMPNDG
                     GGLLFTITEYTDAINKYPELVPYFKKFIGSVEFINGGLRYCLWLNEAKYEKIKSNPLI
                     QERISISKNHREKSTDKGTNKLALTPWKFRDTHETTNYSIVVPSVSSENRFYIPMGLA
                     GADTILSNLIYVIYDAEIYLLGILMSRMHMTWVKAVAGRLKTDYRYSAGLCYNTFPIP
                     ELSTRRKNEIEEAILEILDLREEQGGTLAELYNPSTMPIELKVAHEKLDGIVERAYRQ
                     KQFESDEERLEVLLKLYQEMTER*"
                     /label="yeeA CDS"
     gene            664513..667152
                     /gene="yeeA"
                     /locus_tag="BSU_06760"
                     /old_locus_tag="BSU06760"
                     /label="yeeA gene"
     CDS             667164..668963
                     /gene="yeeB"
                     /locus_tag="BSU_06770"
                     /old_locus_tag="BSU06770"
                     /function="16.8: Protect"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative DNA helicase / endonuclease; HGT
                     island"
                     /protein_id="NP_388559.2"
                     /db_xref="EnsemblGenomes-Gn:BSU06770"
                     /db_xref="EnsemblGenomes-Tr:CAB12497"
                     /db_xref="GOA:O34469"
                     /db_xref="InterPro:IPR014001"
                     /db_xref="InterPro:IPR027417"
                     /db_xref="SubtiList:BG12819"
                     /db_xref="UniProtKB/Swiss-Prot:O34469"
                     /translation="MENIIEINYNQTGKSKKTNEYGMREMQARAFEKRNSQYLLVKAP
                     PASGKSRALMFIGLDKLINQGLRKVIVAVPERSIGSSFKNTDLKSYGFFENWKVDPRN
                     NLTVGGDNSKVKSFVRFMESDDQVLICTHSTLRFAFEKIDDKAFDNCLLAIDEFHHVS
                     ADVNSRLGELLRSIIHNSSAHIVAMTGSYFRGDSVPILLPEDEELFDKVTYSYYEQLD
                     GYEYLKGFGIGYHFYQGQYTSAINEVLDTNKKTIVHIPNVNSGESTKDKYDEVGKILD
                     MIGEVEYQDDDTGIIYVKRHSDGKTLKIADLVDDQVGRENVVAYLRNIEALDDLDIII
                     ALGMAKEGFDWPFCEHTLTVGYRGSLTEIVQIIGRCTRDSYNKTYAQFTNLIAMPDAK
                     DEVVTYTVNTMLKAISASLLMEQVLTPDFKFKRRRNESEKSSTTGELFVKGLKEPSTE
                     NVKKIIENDINDLKAKIMQDSQVQKTFSGEVDPKVLNKVLIPKVIQKVYPNLSDEEIE
                     EVRQHVVLDTVMKGAKSEVVGSKEFIRMADKFINIEDLDINLIDSINPFQKAFEVLSK
                     ELNSPVLKLIQETIDAKRINFDEDELVFIWPKV*"
                     /label="yeeB CDS"
     gene            667164..668963
                     /gene="yeeB"
                     /locus_tag="BSU_06770"
                     /old_locus_tag="BSU06770"
                     /label="yeeB gene"
     promotor_-10    complement(667404..667419)
                     /Source="Nicolas_upshift_promotors"
                     /id="U519"
                     /multdbtbs="-"
                     /comp="M9"
                     /sig="SigWXY"
                     /pcomp=1
                     /psig=1
                     /xcortree=1689
                     /SigmaFactorBS="cagttaaattatttctaggatcaactttccaattttcaaAGA
                     AACCATAactttttaaatCCGTATTTTTAAATGAagaacctatagagcgttcaggtac
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(667419)
                     /Source="Nicolas_upshifts"
                     /id="U519"
                     /multdbtbs="-"
                     /comp="M9"
                     /sig="SigWXY"
                     /pcomp=1
                     /psig=1
                     /xcortree=1689
                     /SigmaFactorBS="cagttaaattatttctaggatcaactttccaattttcaaAGA
                     AACCATAactttttaaatCCGTATTTTTAAATGAagaacctatagagcgttcaggtac
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(667431..667440)
                     /Source="Nicolas_upshift_promotors"
                     /id="U519"
                     /multdbtbs="-"
                     /comp="M9"
                     /sig="SigWXY"
                     /pcomp=1
                     /psig=1
                     /xcortree=1689
                     /SigmaFactorBS="cagttaaattatttctaggatcaactttccaattttcaaAGA
                     AACCATAactttttaaatCCGTATTTTTAAATGAagaacctatagagcgttcaggtac
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     S_feature       668964..669075
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_744739_744850"
                     /HighExp="Cold, G180, G135, G150, H2O2, Paraq, HPh, LPh,
                     Oxctl, BMM"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.999"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S243"
     CDS             669076..670224
                     /gene="yeeC"
                     /locus_tag="BSU_06780"
                     /old_locus_tag="BSU06780"
                     /function="16.5: Explore"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms; Product type h: extrachromosomal origin"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved hypothetical protein; HGT island"
                     /protein_id="NP_388560.2"
                     /db_xref="EnsemblGenomes-Gn:BSU06780"
                     /db_xref="EnsemblGenomes-Tr:CAB12498"
                     /db_xref="InterPro:IPR018306"
                     /db_xref="SubtiList:BG12820"
                     /db_xref="UniProtKB/Swiss-Prot:O34352"
                     /translation="MASNRYHSINEIMESQLFYQITTPPKKTQKAQYDPEVEKFLEII
                     EFVKENGREPQKVPTDLTERSLASRLIGIRKDPDRMEYLKEYDEIGLLEVRSKELTIP
                     KISSIDDILKSGLSALLGDNLNNDITRSIFDTSSLQKVTTMPEYVAKRKKIKDFGKFE
                     ELFKKCHKEITEGKRKILTFKNEQDIQSNSFYILKGVLLYVEDVGERKKAKGKTNARL
                     RCIFENGTESDMLLRSLSAELYKHGRRVTDNEDTLLDNVREDDVSTGFIYVLKSLSTD
                     PQISSIKNLYKIGFTTGSVENRIRNAENQSTYLYAPVEIVTTYQVFNMNASKFETAIH
                     HALANNNLDVSILGANGKMLVPKEWFVVTLEDLQAVIDEIVMMVHLYD*"
                     /label="yeeC CDS"
     gene            669076..670224
                     /gene="yeeC"
                     /locus_tag="BSU_06780"
                     /old_locus_tag="BSU06780"
                     /label="yeeC gene"
     S_feature       670225..671414
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_746000_747189"
                     /HighExp="Cold, G135, H2O2, G180, G150, LPh, C30, HPh,
                     BMM, Paraq"
                     /AntisenseName="yeeD"
                     /AntisenseCor="-0.41772847620445203"
                     /AntisenseRegPval="-12.1"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.999"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S244"
     CDS             complement(670486..670791)
                     /gene="yeeD"
                     /locus_tag="BSU_06790"
                     /old_locus_tag="BSU06790"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved hypothetical protein; HGT island"
                     /protein_id="NP_388561.1"
                     /db_xref="EnsemblGenomes-Gn:BSU06790"
                     /db_xref="EnsemblGenomes-Tr:CAB12499"
                     /db_xref="SubtiList:BG12821"
                     /db_xref="UniProtKB/Swiss-Prot:O34950"
                     /translation="MTVRKELIKQINLTITVIKTINQKNPTPMVKNILKRYEEAKEFI
                     LQSSDGKFEEDLSKVRNKLDTLTRAYLESANDYMNPMLKEMHKTEKLLKEYDETTQS*
                     "
                     /label="yeeD CDS"
     gene            complement(670486..670791)
                     /gene="yeeD"
                     /locus_tag="BSU_06790"
                     /old_locus_tag="BSU06790"
                     /label="yeeD gene"
     CDS             complement(670858..671064)
                     /gene="yezA"
                     /locus_tag="BSU_06800"
                     /old_locus_tag="BSU06800"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms; Product type h: extrachromosomal origin"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein; HGT island"
                     /protein_id="NP_388562.1"
                     /db_xref="EnsemblGenomes-Gn:BSU06800"
                     /db_xref="EnsemblGenomes-Tr:CAB12500"
                     /db_xref="GOA:O31505"
                     /db_xref="InterPro:IPR000290"
                     /db_xref="InterPro:IPR035900"
                     /db_xref="SubtiList:BG12872"
                     /db_xref="UniProtKB/Swiss-Prot:O31505"
                     /translation="MDKLTKEELIFLVKELMNPTLDDEKVSEYLDLLEKNVPYPAPSD
                     LIFWSNEDYTAEQVVKIALNYKDE*"
                     /label="yezA CDS"
     gene            complement(670858..671064)
                     /gene="yezA"
                     /locus_tag="BSU_06800"
                     /old_locus_tag="BSU06800"
                     /label="yezA gene"
     CDS             complement(671304..671759)
                     /gene="yezG"
                     /locus_tag="BSU_06811"
                     /old_locus_tag="BSU06811"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms; Product type h: extrachromosomal origin"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved hypothetical protein; HGT island"
                     /protein_id="YP_003097692.1"
                     /db_xref="EnsemblGenomes-Gn:BSU06811"
                     /db_xref="EnsemblGenomes-Tr:CAX52579"
                     /db_xref="InterPro:IPR006728"
                     /db_xref="InterPro:IPR036170"
                     /db_xref="UniProtKB/Swiss-Prot:C0H3X4"
                     /translation="MQDLYQLIGEKLNDIIPGEWTKIYLYAEVLDDSTMVLFHFRTPE
                     NNQIIYSQDIPSHYNVSKDIFKTLLRELRELFEELRTEHRNNNDDVWTNLTLTLDRSG
                     EFQLDYNYDDILASELDGYERIAIWEYKNLGILPEDEDDKEFVISYLGL*"
                     /label="yezG CDS"
     gene            complement(671304..671759)
                     /gene="yezG"
                     /locus_tag="BSU_06811"
                     /old_locus_tag="BSU06811"
                     /label="yezG gene"
     downshifts      complement(671317)
                     /Source="Nicolas_upshifts"
                     /id="D335"
                     /incds=0
                     /nref=41
                     /ntot=213
                     /MaxReadThrough="4.42275"
                     /MaxDrop="5.23695"
                     /score="10.2582155"
                     /energy="-11.7"
                     /TU="U520,U521"
                     /idTUdmin="U520"
                     /TUdmin="-529"
                     /isTUend="FALSE"
                     /label="downshifts"
     CDS             complement(671779..673788)
                     /gene="yeeF"
                     /locus_tag="BSU_06812"
                     /old_locus_tag="BSU06812"
                     /function="16.5: Explore"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; Product type h : extrachromosomal
                     origin"
                     /codon_start=1
                     /transl_table=11
                     /product="putative nucleic acid binding protein; HGT
                     island"
                     /protein_id="NP_388563.2"
                     /db_xref="EnsemblGenomes-Gn:BSU06812"
                     /db_xref="EnsemblGenomes-Tr:CAB12501"
                     /db_xref="GOA:O31506"
                     /db_xref="InterPro:IPR006829"
                     /db_xref="SubtiList:BG12822"
                     /db_xref="UniProtKB/Swiss-Prot:O31506"
                     /translation="MKVFEAKTLLSEATDRAKEYKELRTQMVNLRKALKGVADLSDSE
                     FSGKGASNIKAFYHDHVGVADQWIDYIDMKIAFFNSIAGAAEDKGLSDAYIEESFLEH
                     ELANANKKSKSIMSEQKKAMKDILNDIDDILPLDLFSTETFKDELADANDKRKKTLEK
                     LDALDEDLKTEYALSEPNEQFIKSDFQKLQEATGKGKNATPIHYNAKAYRESDIHKKK
                     GDIEKRTEAYLKIKKEEAKEREIEKLKERLKNYDYADADEFYEMAKTIGYENLTAEQQ
                     RYFTQIENTRELEAGFKGVAVGLYDSGKDAVVGLWDMVTDPGGTVEAITGAMAHPIKT
                     YEAISAAIEESYQKDMVNGDTYSRARWVSYAVGTVVTSIVGTKGVGAVSKTGTAAKVT
                     TKVKTAASKSATAQKAITVSKQTVDHIKQKVNTGIEVSKKHVKTKLNQIGDLTLADIL
                     PYHPRHDLVPAGVPYNAVNGVTLKEGLQKFAKVILPKPYGTSSSGRRTPAPHVPPVTV
                     KYGEHFARWSRKKVLKPNIIYKTKEGYTYTTDNYGRITSVKADLQLGEAKRNQYAQTN
                     AGKPQDRKPDDDGGHLIATQFKGSGQFDNIVPMNSQINRSGGKWYEMEQEWAKALSKK
                     PPKKVAVQIEPVYSGDSLRPSYFDVTYKIGSRKEISVSIKNQPGG*"
                     /label="yeeF CDS"
     gene            complement(671779..673788)
                     /gene="yeeF"
                     /locus_tag="BSU_06812"
                     /old_locus_tag="BSU06812"
                     /label="yeeF gene"
     promotor_-10    complement(672146..672165)
                     /Source="Nicolas_upshift_promotors"
                     /id="U520"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.98101898101898"
                     /psig="0.999000999001"
                     /xcortree=2752
                     /SigmaFactorBS="aatatcatctacaaaacaaaagaaggctacACGTACacgact
                     gacaacTATGGTAGAATTACAAGTGTcaaagcagacttgcagctgggagaagcgaaac
                     g"
                     /listShort="yezG, yezA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(672153)
                     /Source="Nicolas_upshifts"
                     /id="U520"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.98101898101898"
                     /psig="0.999000999001"
                     /xcortree=2752
                     /SigmaFactorBS="aatatcatctacaaaacaaaagaaggctacACGTACacgact
                     gacaacTATGGTAGAATTACAAGTGTcaaagcagacttgcagctgggagaagcgaaac
                     g"
                     /listShort="yezG, yezA"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(672178..672183)
                     /Source="Nicolas_upshift_promotors"
                     /id="U520"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.98101898101898"
                     /psig="0.999000999001"
                     /xcortree=2752
                     /SigmaFactorBS="aatatcatctacaaaacaaaagaaggctacACGTACacgact
                     gacaacTATGGTAGAATTACAAGTGTcaaagcagacttgcagctgggagaagcgaaac
                     g"
                     /listShort="yezG, yezA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     misc_feature    complement(673815..673834)
                     /Source="Nicolas_upshift_promotors"
                     /id="U521"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.976023976023976"
                     /psig="0.994005994005994"
                     /xcortree=2985
                     /SigmaFactorBS="atgactcatttttccaccaaaacacgttctcacccccacctt
                     atcccgaccCGTGGTAAAATTTTGATATTgagcgaacaaaagaagggaaatggtcatg
                     a"
                     /listShort="yeeF, yezG, yezA, yeeD"
                     /GFF_Attribute="listLong"
                     /label="promotor_single_box"
                     /note="Geneious type: promotor_single_box"
     upshifts        complement(673825)
                     /Source="Nicolas_upshifts"
                     /id="U521"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.976023976023976"
                     /psig="0.994005994005994"
                     /xcortree=2985
                     /SigmaFactorBS="atgactcatttttccaccaaaacacgttctcacccccacctt
                     atcccgaccCGTGGTAAAATTTTGATATTgagcgaacaaaagaagggaaatggtcatg
                     a"
                     /listShort="yeeF, yezG, yezA, yeeD"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             674000..675022
                     /gene="yeeG"
                     /locus_tag="BSU_06820"
                     /old_locus_tag="BSU06820"
                     /function="16.5: Explore"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; Product type m: membrane
                     component"
                     /codon_start=1
                     /transl_table=11
                     /product="putative phage receptor protein"
                     /protein_id="NP_388564.2"
                     /db_xref="EnsemblGenomes-Gn:BSU06820"
                     /db_xref="EnsemblGenomes-Tr:CAB12502"
                     /db_xref="GOA:O31507"
                     /db_xref="InterPro:IPR015943"
                     /db_xref="SubtiList:BG12823"
                     /db_xref="UniProtKB/Swiss-Prot:O31507"
                     /translation="MTKKRITFGLLVLMVCVILFVLYVQLRNKDSIPVQSSAIHPEED
                     RIFFIYSNPFIKESVLLSTSTGERFNRRTFKVADVPYIQTKSYASTDLVLLAEHEPFY
                     YTLEKDVIKEHPLSDPFAFWYEGKDVTIEAYNVDTTGNEIHINDRKTKKEYTLTLPPL
                     VTMGASDENFIYIIQSMSIYVIDRKTEEMIETLSLASYADQFADSEEFIVASSDHKLT
                     VIEKGTWKTTYIAYPEDLEYADTVYYDKESGSFYVAYEDKEGGANLLEYGEDFSIHTY
                     SLKFPYMEAKFKGNLLYIVAQEEHKKGIGGYVGVFDIHSKEMLYQFDLPEEQVKVQDF
                     VVVDNK*"
                     /label="yeeG CDS"
     gene            674000..675022
                     /gene="yeeG"
                     /locus_tag="BSU_06820"
                     /old_locus_tag="BSU06820"
                     /label="yeeG gene"
     promotor_-35    675122..675129
                     /Source="Nicolas_upshift_promotors"
                     /id="U522"
                     /multdbtbs="SigA"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp="0.466533466533467"
                     /psig="0.997002997002997"
                     /xcortree=2961
                     /SigmaFactorBS="caaattgacaggatgaaaaaacaatttcttccttctatATTG
                     TTTTcaaaatttgggatTGATAGAATATGACATATCTcatagagaaggagggaagccg
                     t"
                     /listShort="rapH, phrH, S245, yeeI"
                     /listLong="yeeK"
                     /label="promotor_-35"
     promotor_-10    675143..675162
                     /Source="Nicolas_upshift_promotors"
                     /id="U522"
                     /multdbtbs="SigA"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp="0.466533466533467"
                     /psig="0.997002997002997"
                     /xcortree=2961
                     /SigmaFactorBS="caaattgacaggatgaaaaaacaatttcttccttctatATTG
                     TTTTcaaaatttgggatTGATAGAATATGACATATCTcatagagaaggagggaagccg
                     t"
                     /listShort="rapH, phrH, S245, yeeI"
                     /listLong="yeeK"
                     /label="promotor_-10"
     upshifts        675144
                     /Source="Nicolas_upshifts"
                     /id="U522"
                     /multdbtbs="SigA"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp="0.466533466533467"
                     /psig="0.997002997002997"
                     /xcortree=2961
                     /SigmaFactorBS="caaattgacaggatgaaaaaacaatttcttccttctatATTG
                     TTTTcaaaatttgggatTGATAGAATATGACATATCTcatagagaaggagggaagccg
                     t"
                     /listShort="rapH, phrH, S245, yeeI"
                     /listLong="yeeK"
                     /label="upshifts"
     CDS             675184..676314
                     /gene="rapH"
                     /locus_tag="BSU_06830"
                     /old_locus_tag="BSU06830"
                     /EC_number="3.1.-.-"
                     /function="16.3: Control"
                     /experiment="publication(s) with functional evidences,
                     PMID:16553878, 21908671"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 16553878, 21908671;
                     Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator aspartate phosphatase"
                     /protein_id="NP_388565.2"
                     /db_xref="EnsemblGenomes-Gn:BSU06830"
                     /db_xref="EnsemblGenomes-Tr:CAB12503"
                     /db_xref="GOA:Q59HN8"
                     /db_xref="InterPro:IPR011990"
                     /db_xref="InterPro:IPR013026"
                     /db_xref="InterPro:IPR019734"
                     /db_xref="PDB:3Q15"
                     /db_xref="SubtiList:BG11031"
                     /db_xref="UniProtKB/Swiss-Prot:Q59HN8"
                     /translation="MSQAIPSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQME
                     EDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLETIETPQKKLTGLLKYYSL
                     FFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMY
                     HILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRF
                     IAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQ
                     KAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIE
                     ACARSAAAVFESSCHFEQAAAFYRKVLKAQEDILKGECLYAY*"
                     /label="rapH CDS"
     gene            675184..676314
                     /gene="rapH"
                     /locus_tag="BSU_06830"
                     /old_locus_tag="BSU06830"
                     /label="rapH gene"
     CDS             676304..676477
                     /gene="phrH"
                     /locus_tag="BSU_06839"
                     /old_locus_tag="BSU06839"
                     /experiment="publication(s) with functional evidences,
                     PMID:16553878, 21908671"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 16553878, 21908671;
                     Product type r: regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="hexapeptide (TDRNTT) inhibitor of regulatory
                     cascade"
                     /protein_id="YP_003097693.1"
                     /db_xref="EnsemblGenomes-Gn:BSU06839"
                     /db_xref="EnsemblGenomes-Tr:CAX52580"
                     /db_xref="GOA:Q59HN7"
                     /db_xref="UniProtKB/Swiss-Prot:Q59HN7"
                     /translation="MPIKKKVMMCLAVTLVFGSMSFPTLTNSGGFKESTDRNTTYIDH
                     SPYKLSDQKKALS*"
                     /label="phrH CDS"
     gene            676304..676477
                     /gene="phrH"
                     /locus_tag="BSU_06839"
                     /old_locus_tag="BSU06839"
                     /label="phrH gene"
     downshifts      676432
                     /Source="Nicolas_upshifts"
                     /id="D336"
                     /incds=0
                     /nref=3
                     /ntot=66
                     /MaxReadThrough="5.5891"
                     /MaxDrop="2.9063"
                     /score="14.5772672"
                     /energy="-7.6"
                     /TU="U522"
                     /idTUdmin="U522"
                     /TUdmin="-901"
                     /isTUend="FALSE"
                     /label="downshifts"
     S_feature       676478..676582
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_752253_752357"
                     /HighExp="S2, G/S, T2.30H, GM 150, T3.0H, T2.0H, S1,
                     T-4.40H, T-2.40H, T3.30H"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.997"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S245"
     promotor_-35    676549..676556
                     /Source="Nicolas_upshift_promotors"
                     /id="U523"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.93006993006993"
                     /psig="0.999000999001"
                     /xcortree=1934
                     /SigmaFactorBS="cattccttctatttctaacgcaagaCACTCGAAacaaccaaa
                     ccattTGAGGTATAATGGATAAAGTgaataacagtatttagattgatatatatgaaag
                     a"
                     /listShort="yeeI, yeeK"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    676571..676590
                     /Source="Nicolas_upshift_promotors"
                     /id="U523"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.93006993006993"
                     /psig="0.999000999001"
                     /xcortree=1934
                     /SigmaFactorBS="cattccttctatttctaacgcaagaCACTCGAAacaaccaaa
                     ccattTGAGGTATAATGGATAAAGTgaataacagtatttagattgatatatatgaaag
                     a"
                     /listShort="yeeI, yeeK"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        676584
                     /Source="Nicolas_upshifts"
                     /id="U523"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.93006993006993"
                     /psig="0.999000999001"
                     /xcortree=1934
                     /SigmaFactorBS="cattccttctatttctaacgcaagaCACTCGAAacaaccaaa
                     ccattTGAGGTATAATGGATAAAGTgaataacagtatttagattgatatatatgaaag
                     a"
                     /listShort="yeeI, yeeK"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             676637..677356
                     /gene="yeeI"
                     /locus_tag="BSU_06840"
                     /old_locus_tag="BSU06840"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative DNA integrase or transcriptional
                     regulator"
                     /protein_id="NP_388566.3"
                     /db_xref="EnsemblGenomes-Gn:BSU06840"
                     /db_xref="EnsemblGenomes-Tr:CAB12504"
                     /db_xref="GOA:O31509"
                     /db_xref="InterPro:IPR002876"
                     /db_xref="InterPro:IPR017856"
                     /db_xref="InterPro:IPR026562"
                     /db_xref="InterPro:IPR026564"
                     /db_xref="InterPro:IPR029072"
                     /db_xref="SubtiList:BG12824"
                     /db_xref="UniProtKB/Swiss-Prot:O31509"
                     /translation="MGRKWNNIKEKKASKDANTSRIYAKFGREIYVAAKQGEPDPESN
                     QALKVVLERAKTYSVPKNIIERAIEKAKGGAEENYDELRYEGFGPNGSMIIVDALTNN
                     VNRTAPEVRAAFGKNGGNMGVSGSVAYMFDATAVIGVEGKTADEALEILMEADVDVRD
                     ILEEDDSAIVYAEPDQFHAVQEAFKNAGVEEFTVAELTMLAQSEVTLPDDAKEQFEKL
                     IDALEDLEDVQQVYHNVDLGE*"
                     /label="yeeI CDS"
     gene            676637..677356
                     /gene="yeeI"
                     /locus_tag="BSU_06840"
                     /old_locus_tag="BSU06840"
                     /label="yeeI gene"
     downshifts      complement(676639)
                     /Source="Nicolas_upshifts"
                     /id="D337"
                     /incds=0
                     /nref=3
                     /ntot=70
                     /MaxReadThrough="1.42969"
                     /MaxDrop="3.99424"
                     /score="-5.23712559"
                     /energy="-7.6"
                     /TU="NA"
                     /idTUdmin="U520"
                     /TUdmin="-5851"
                     /isTUend="FALSE"
                     /label="downshifts"
     promotor_-35    677214..677221
                     /Source="Nicolas_upshift_promotors"
                     /id="U524"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.844155844155844"
                     /psig="0.903096903096903"
                     /xcortree=3101
                     /SigmaFactorBS="gtttaaaaacgcgggtgtcgaggaatttaCAGTAGCGgagct
                     gacaatgcTTGCGCAAAGTGAAGTAACGcttccggatgatgcaaaggaacagtttgaa
                     a"
                     /listShort="yeeK"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    677235..677254
                     /Source="Nicolas_upshift_promotors"
                     /id="U524"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.844155844155844"
                     /psig="0.903096903096903"
                     /xcortree=3101
                     /SigmaFactorBS="gtttaaaaacgcgggtgtcgaggaatttaCAGTAGCGgagct
                     gacaatgcTTGCGCAAAGTGAAGTAACGcttccggatgatgcaaaggaacagtttgaa
                     a"
                     /listShort="yeeK"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        677245
                     /Source="Nicolas_upshifts"
                     /id="U524"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.844155844155844"
                     /psig="0.903096903096903"
                     /xcortree=3101
                     /SigmaFactorBS="gtttaaaaacgcgggtgtcgaggaatttaCAGTAGCGgagct
                     gacaatgcTTGCGCAAAGTGAAGTAACGcttccggatgatgcaaaggaacagtttgaa
                     a"
                     /listShort="yeeK"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     downshifts      677338
                     /Source="Nicolas_upshifts"
                     /id="D338"
                     /incds=0
                     /nref=223
                     /ntot=271
                     /MaxReadThrough="4.94236"
                     /MaxDrop="5.19148"
                     /score="31.0415099"
                     /energy="-11.4"
                     /TU="U523,U524"
                     /idTUdmin="U522"
                     /TUdmin=5
                     /isTUend="TRUE"
                     /label="downshifts"
     promotor_-35    677425..677434
                     /Source="Nicolas_upshift_promotors"
                     /id="U525"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp="0.999000999001"
                     /psig="0.999000999001"
                     /xcortree=1279
                     /SigmaFactorBS="tcccggaaattgttttagctgtatgtaggcggccGCCTATAC
                     GAtctataagatattCTCATACTCTGGACTGTAACctatgtgaaggagagagtaaata
                     t"
                     /listShort="yeeK"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    677448..677467
                     /Source="Nicolas_upshift_promotors"
                     /id="U525"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp="0.999000999001"
                     /psig="0.999000999001"
                     /xcortree=1279
                     /SigmaFactorBS="tcccggaaattgttttagctgtatgtaggcggccGCCTATAC
                     GAtctataagatattCTCATACTCTGGACTGTAACctatgtgaaggagagagtaaata
                     t"
                     /listShort="yeeK"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        677451
                     /Source="Nicolas_upshifts"
                     /id="U525"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp="0.999000999001"
                     /psig="0.999000999001"
                     /xcortree=1279
                     /SigmaFactorBS="tcccggaaattgttttagctgtatgtaggcggccGCCTATAC
                     GAtctataagatattCTCATACTCTGGACTGTAACctatgtgaaggagagagtaaata
                     t"
                     /listShort="yeeK"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-10    complement(677455..677473)
                     /Source="Nicolas_upshift_promotors"
                     /id="U526"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.935064935064935"
                     /psig="0.935064935064935"
                     /xcortree=1214
                     /SigmaFactorBS="aatgaccaaaaccaggtccgccatacatatgtcttgtatcaG
                     TCATAtttactctctccttcACATAGGTTACAGTCCAGAgtatgagaatatcttatag
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(677475)
                     /Source="Nicolas_upshifts"
                     /id="U526"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.935064935064935"
                     /psig="0.935064935064935"
                     /xcortree=1214
                     /SigmaFactorBS="aatgaccaaaaccaggtccgccatacatatgtcttgtatcaG
                     TCATAtttactctctccttcACATAGGTTACAGTCCAGAgtatgagaatatcttatag
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(677489..677494)
                     /Source="Nicolas_upshift_promotors"
                     /id="U526"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.935064935064935"
                     /psig="0.935064935064935"
                     /xcortree=1214
                     /SigmaFactorBS="aatgaccaaaaccaggtccgccatacatatgtcttgtatcaG
                     TCATAtttactctctccttcACATAGGTTACAGTCCAGAgtatgagaatatcttatag
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             677490..677927
                     /gene="cotK"
                     /locus_tag="BSU_06850"
                     /old_locus_tag="BSU06850"
                     /function="16.5: Explore"
                     /experiment="publication(s) with functional evidences,
                     PMID:10714992, 19060142, 19933362"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 10714992, 19060142,
                     19933362; Product type cp: cell process"
                     /codon_start=1
                     /transl_table=11
                     /product="spore inner coat protein"
                     /protein_id="NP_388567.2"
                     /db_xref="EnsemblGenomes-Gn:BSU06850"
                     /db_xref="EnsemblGenomes-Tr:CAB12505"
                     /db_xref="GOA:O31510"
                     /db_xref="SubtiList:BG12825"
                     /db_xref="UniProtKB/Swiss-Prot:O31510"
                     /translation="MTDTRHMYGGPGFGHYQGFGIGHPGYGMQSTGYPGYGMYGGHPG
                     YGMQGYPDHGIHGGVGGYPGYGGYGGYPSGGYGGSPGTGSYPSMHHENDGHHHYYHHH
                     HDGKDNLHHHHHHVGKDNHHHHHDGHYGHHHHHMGHWGKDGYK*"
                     /label="cotK CDS"
     gene            677490..677927
                     /gene="cotK"
                     /locus_tag="BSU_06850"
                     /old_locus_tag="BSU06850"
                     /label="cotK gene"
     downshifts      complement(677497)
                     /Source="Nicolas_upshifts"
                     /id="D339"
                     /incds=0
                     /nref=1
                     /ntot=4
                     /MaxReadThrough="1.62645"
                     /MaxDrop="3.26146"
                     /score="-5.23712559"
                     /energy="-7.6"
                     /TU="NA"
                     /idTUdmin="U520"
                     /TUdmin="-6709"
                     /isTUend="FALSE"
                     /label="downshifts"
     downshifts      677927
                     /Source="Nicolas_upshifts"
                     /id="D340"
                     /incds=0
                     /nref=82
                     /ntot=208
                     /MaxReadThrough="2.37564"
                     /MaxDrop="8.21113"
                     /score="17.7046271"
                     /energy="-9"
                     /TU="U525"
                     /idTUdmin="U523"
                     /TUdmin=0
                     /isTUend="TRUE"
                     /label="downshifts"
     promotor_-35    677987..677994
                     /Source="Nicolas_upshift_promotors"
                     /id="U527"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.938061938061938"
                     /psig="0.999000999001"
                     /xcortree=2200
                     /SigmaFactorBS="cttgcagatcaagagtgtttttttagctttttTCTTGACTgt
                     tcagtctggaaaaTGGTAACATTTGTTTCAGGAggtgatcattttttggggaggaata
                     a"
                     /listShort="yezE"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    678010..678029
                     /Source="Nicolas_upshift_promotors"
                     /id="U527"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.938061938061938"
                     /psig="0.999000999001"
                     /xcortree=2200
                     /SigmaFactorBS="cttgcagatcaagagtgtttttttagctttttTCTTGACTgt
                     tcagtctggaaaaTGGTAACATTTGTTTCAGGAggtgatcattttttggggaggaata
                     a"
                     /listShort="yezE"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        678015
                     /Source="Nicolas_upshifts"
                     /id="U527"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.938061938061938"
                     /psig="0.999000999001"
                     /xcortree=2200
                     /SigmaFactorBS="cttgcagatcaagagtgtttttttagctttttTCTTGACTgt
                     tcagtctggaaaaTGGTAACATTTGTTTCAGGAggtgatcattttttggggaggaata
                     a"
                     /listShort="yezE"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             678042..678626
                     /gene="yezE"
                     /locus_tag="BSU_06860"
                     /old_locus_tag="BSU06860"
                     /function="16.3: Control"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; Product type r: regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="putative transcriptional regulator (TetR
                     family)"
                     /protein_id="YP_054572.1"
                     /db_xref="EnsemblGenomes-Gn:BSU06860"
                     /db_xref="EnsemblGenomes-Tr:CAE01448"
                     /db_xref="GOA:Q7WY76"
                     /db_xref="InterPro:IPR001647"
                     /db_xref="InterPro:IPR009057"
                     /db_xref="InterPro:IPR036271"
                     /db_xref="SubtiList:BG14194"
                     /db_xref="UniProtKB/Swiss-Prot:Q7WY76"
                     /translation="MGRNKEFDTALVLHRAIEVFGEYGYEGTSLQDLLSHLGIARQSL
                     YDTYGTKRDLFLSAVKSYLEGKNAAVMERLEAPGSVKEAIRDIFQEGVNALRDPERAK
                     ACYIINSAIEQIPHDPELARYFERQSKQLEDAFYHGLLRAKDQGELNGEDTDISALAR
                     YLNQSRLSLTFIAKVTADMDRLQDHVDVSLSVLD*"
                     /label="yezE CDS"
     gene            678042..678626
                     /gene="yezE"
                     /locus_tag="BSU_06860"
                     /old_locus_tag="BSU06860"
                     /label="yezE gene"
     downshifts      678607
                     /Source="Nicolas_upshifts"
                     /id="D341"
                     /incds=0
                     /nref=26
                     /ntot=216
                     /MaxReadThrough="2.43615"
                     /MaxDrop="3.31193"
                     /score="17.7046271"
                     /energy="-9"
                     /TU="NA"
                     /idTUdmin="U527"
                     /TUdmin="-2"
                     /isTUend="TRUE"
                     /label="downshifts"
     CDS             678705..679148
                     /gene="yesE"
                     /locus_tag="BSU_06870"
                     /old_locus_tag="BSU06870"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved hypothetical protein"
                     /protein_id="NP_388568.1"
                     /db_xref="EnsemblGenomes-Gn:BSU06870"
                     /db_xref="EnsemblGenomes-Tr:CAB12506"
                     /db_xref="InterPro:IPR009959"
                     /db_xref="InterPro:IPR032710"
                     /db_xref="PDB:1S5A"
                     /db_xref="SubtiList:BG12844"
                     /db_xref="UniProtKB/Swiss-Prot:O31511"
                     /translation="MLMNEFEKACETLRKFMAYMLEKDMKSWTELWDENAVFEFPYAP
                     EGSPKRIEGKAAIYDYIKDYPKQIHLSSFTAPTVYRSADSNTVIAEFQCDGHVIETGL
                     PYRQSYISVIETRDGRIVRYRDYWNPLVVKEAFGGSFLQTEESGK*"
                     /label="yesE CDS"
     gene            678705..679148
                     /gene="yesE"
                     /locus_tag="BSU_06870"
                     /old_locus_tag="BSU06870"
                     /label="yesE gene"
     CDS             679145..680005
                     /gene="yesF"
                     /locus_tag="BSU_06880"
                     /old_locus_tag="BSU06880"
                     /EC_number="1.-.-.-"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 21494745; Product type
                     e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative oxidoreductase"
                     /protein_id="NP_388569.1"
                     /db_xref="EnsemblGenomes-Gn:BSU06880"
                     /db_xref="EnsemblGenomes-Tr:CAB12507"
                     /db_xref="GOA:O31512"
                     /db_xref="InterPro:IPR001509"
                     /db_xref="InterPro:IPR008030"
                     /db_xref="InterPro:IPR036291"
                     /db_xref="SubtiList:BG11808"
                     /db_xref="UniProtKB/Swiss-Prot:O31512"
                     /translation="MMKQNPILITGGTGTVGSRIASRLIKLGYRVRIASRKKGALADA
                     EYVYFNWKYASSFTPALEQVKQIYLVAPVGVFDPAPYVLPFLKEAKRLGAKRVVMQSA
                     SVVSENGPVFGALHQAVREFPEWTVLRPSYFMQNFINVQHRMSIQTEGRITTASGEGK
                     LGFIDADDIAETAVRALIDDVPHQTHHILTGPEALSYAEAAEIIGAAAGRRVEHVSIS
                     RSELQHKMEAGGLPADYAHFMAKLDEAISHGAEHRVTDTVKRVTGKEPRSLSEFAAAH
                     AAYWTSFWTE*"
                     /label="yesF CDS"
     gene            679145..680005
                     /gene="yesF"
                     /locus_tag="BSU_06880"
                     /old_locus_tag="BSU06880"
                     /label="yesF gene"
     promotor_-35    680067..680072
                     /Source="Nicolas_upshift_promotors"
                     /id="U528"
                     /multdbtbs="SigE"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.993006993006993"
                     /psig="0.993006993006993"
                     /xcortree=1097
                     /SigmaFactorBS="ccgaaggtcttcttattgaaaaagctaagtcgtgttttaGTC
                     ATAatcatgcctcctgccTCATACCTATTAAGGTCATtgtttttgagaaaggaggagc
                     c"
                     /listShort="cotJA, cotJB, cotJC, S246, yesJ, yesK"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    680088..680106
                     /Source="Nicolas_upshift_promotors"
                     /id="U528"
                     /multdbtbs="SigE"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.993006993006993"
                     /psig="0.993006993006993"
                     /xcortree=1097
                     /SigmaFactorBS="ccgaaggtcttcttattgaaaaagctaagtcgtgttttaGTC
                     ATAatcatgcctcctgccTCATACCTATTAAGGTCATtgtttttgagaaaggaggagc
                     c"
                     /listShort="cotJA, cotJB, cotJC, S246, yesJ, yesK"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        680088
                     /Source="Nicolas_upshifts"
                     /id="U528"
                     /multdbtbs="SigE"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.993006993006993"
                     /psig="0.993006993006993"
                     /xcortree=1097
                     /SigmaFactorBS="ccgaaggtcttcttattgaaaaagctaagtcgtgttttaGTC
                     ATAatcatgcctcctgccTCATACCTATTAAGGTCATtgtttttgagaaaggaggagc
                     c"
                     /listShort="cotJA, cotJB, cotJC, S246, yesJ, yesK"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-10    complement(680110..680124)
                     /Source="Nicolas_upshift_promotors"
                     /id="U529"
                     /multdbtbs="-"
                     /comp="M15"
                     /sig="Sig-"
                     /pcomp=1
                     /psig=0
                     /xcortree=707
                     /SigmaFactorBS="ggcgtatatgatttgacaggcgtaaacggctgcatatccTTC
                     ATtccggctCCTCCTTTCTCAAAAacaatgaccttaataggtatgaggcaggaggcat
                     g"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(680115)
                     /Source="Nicolas_upshifts"
                     /id="U529"
                     /multdbtbs="-"
                     /comp="M15"
                     /sig="Sig-"
                     /pcomp=1
                     /psig=0
                     /xcortree=707
                     /SigmaFactorBS="ggcgtatatgatttgacaggcgtaaacggctgcatatccTTC
                     ATtccggctCCTCCTTTCTCAAAAacaatgaccttaataggtatgaggcaggaggcat
                     g"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(680132..680136)
                     /Source="Nicolas_upshift_promotors"
                     /id="U529"
                     /multdbtbs="-"
                     /comp="M15"
                     /sig="Sig-"
                     /pcomp=1
                     /psig=0
                     /xcortree=707
                     /SigmaFactorBS="ggcgtatatgatttgacaggcgtaaacggctgcatatccTTC
                     ATtccggctCCTCCTTTCTCAAAAacaatgaccttaataggtatgaggcaggaggcat
                     g"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             680132..680380
                     /gene="cotJA"
                     /locus_tag="BSU_06890"
                     /old_locus_tag="BSU06890"
                     /function="16.5: Explore"
                     /function="16.13: Shape"
                     /function="16.8: Protect"
                     /experiment="publication(s) with functional evidences,
                     PMID:9364920"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 9364920; Product type cp:
                     cell process"
                     /codon_start=1
                     /transl_table=11
                     /product="component of the inner spore coat"
                     /protein_id="NP_388570.1"
                     /db_xref="EnsemblGenomes-Gn:BSU06890"
                     /db_xref="EnsemblGenomes-Tr:CAB12508"
                     /db_xref="InterPro:IPR020256"
                     /db_xref="SubtiList:BG11799"
                     /db_xref="UniProtKB/Swiss-Prot:Q45536"
                     /translation="MKDMQPFTPVKSYTPFHSRFDPCPPIGKKYYRTPPNLYMTFQPE
                     HMEQFSPMEALRKGTLWKDLYDFYENPYRGGDAHGKKG*"
                     /label="cotJA CDS"
     gene            680132..680380
                     /gene="cotJA"
                     /locus_tag="BSU_06890"
                     /old_locus_tag="BSU06890"
                     /label="cotJA gene"
     CDS             680364..680627
                     /gene="cotJB"
                     /locus_tag="BSU_06900"
                     /old_locus_tag="BSU06900"
                     /function="16.13: Shape"
                     /function="16.8: Protect"
                     /function="16.5: Explore"
                     /experiment="publication(s) with functional evidences,
                     PMID:9364920"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 9364920; Product type cp:
                     cell process"
                     /codon_start=1
                     /transl_table=11
                     /product="component of the inner spore coat"
                     /protein_id="NP_388571.2"
                     /db_xref="EnsemblGenomes-Gn:BSU06900"
                     /db_xref="EnsemblGenomes-Tr:CAB12509"
                     /db_xref="InterPro:IPR016571"
                     /db_xref="InterPro:IPR024207"
                     /db_xref="SubtiList:BG11800"
                     /db_xref="UniProtKB/Swiss-Prot:Q45537"
                     /translation="MAKKVDAEYYRQLEQIQAADFVLVELSLYLNTHPHDEDALKQFN
                     QYSGYSRHLKRQFESSYGPLLQFGNSPAGKDWDWGKGPWPWQV*"
                     /label="cotJB CDS"
     gene            680364..680627
                     /gene="cotJB"
                     /locus_tag="BSU_06900"
                     /old_locus_tag="BSU06900"
                     /label="cotJB gene"
     CDS             680642..681211
                     /gene="cotJC"
                     /locus_tag="BSU_06910"
                     /old_locus_tag="BSU06910"
                     /EC_number="1.11.1.6"
                     /function="16.8: Protect"
                     /function="16.5: Explore"
                     /experiment="publication(s) with functional evidences,
                     PMID:7768848, 9364920"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 7768848, 9364920; Product
                     type cp: cell process"
                     /codon_start=1
                     /transl_table=11
                     /product="enzyme component of the inner spore coat"
                     /protein_id="NP_388572.1"
                     /db_xref="EnsemblGenomes-Gn:BSU06910"
                     /db_xref="EnsemblGenomes-Tr:CAB12510"
                     /db_xref="InterPro:IPR007760"
                     /db_xref="InterPro:IPR009078"
                     /db_xref="InterPro:IPR012347"
                     /db_xref="SubtiList:BG11801"
                     /db_xref="UniProtKB/Swiss-Prot:Q45538"
                     /translation="MWVYEKKLQYPVKVSTCNPTLAKYLIEQYGGADGELAAALRYLN
                     QRYTIPDKVIGLLTDIGTEEFAHLEMIATMVYKLTKDATPEQLREAGLGDHYVNHDSA
                     LFYHNAAGVPFTASYIQAKGDPIADLYEDIAAEEKARATYQWLIDISDDPDLNDSLRF
                     LREREIVHSMRFREAVEILKEERDKKKIF*"
                     /label="cotJC CDS"
     gene            680642..681211
                     /gene="cotJC"
                     /locus_tag="BSU_06910"
                     /old_locus_tag="BSU06910"
                     /label="cotJC gene"
     S_feature       681212..681290
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_756987_757065"
                     /HighExp="S4, S5, S3, S7, S6, B36, LoTm, BT, T5.0H, S8"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigEF"
                     /TUshortPSig="0.993"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S246"
     promotor_-35    681263..681268
                     /Source="Nicolas_upshift_promotors"
                     /id="U530"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.518481518481518"
                     /psig="0.999000999001"
                     /xcortree=3085
                     /SigmaFactorBS="tcatacacccttttacatacagagaaaatggTCTGTTtttgc
                     agtttggtcTGCATTATAATCAAGGTGTGtgtgcaagcttactttttgattgggaggc
                     c"
                     /listShort="yesJ"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    681283..681302
                     /Source="Nicolas_upshift_promotors"
                     /id="U530"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.518481518481518"
                     /psig="0.999000999001"
                     /xcortree=3085
                     /SigmaFactorBS="tcatacacccttttacatacagagaaaatggTCTGTTtttgc
                     agtttggtcTGCATTATAATCAAGGTGTGtgtgcaagcttactttttgattgggaggc
                     c"
                     /listShort="yesJ"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        681292
                     /Source="Nicolas_upshifts"
                     /id="U530"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.518481518481518"
                     /psig="0.999000999001"
                     /xcortree=3085
                     /SigmaFactorBS="tcatacacccttttacatacagagaaaatggTCTGTTtttgc
                     agtttggtcTGCATTATAATCAAGGTGTGtgtgcaagcttactttttgattgggaggc
                     c"
                     /listShort="yesJ"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             681336..681878
                     /gene="yesJ"
                     /locus_tag="BSU_06920"
                     /old_locus_tag="BSU06920"
                     /EC_number="2.3.1.-"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative acetyltransferase"
                     /protein_id="NP_388573.1"
                     /db_xref="EnsemblGenomes-Gn:BSU06920"
                     /db_xref="EnsemblGenomes-Tr:CAB12511"
                     /db_xref="GOA:O31513"
                     /db_xref="InterPro:IPR000182"
                     /db_xref="InterPro:IPR016181"
                     /db_xref="SubtiList:BG11809"
                     /db_xref="UniProtKB/Swiss-Prot:O31513"
                     /translation="MTAFKIENETIADGFYACPAVYEDAESITGLLVRTAEWLRDRGS
                     NQWSGLLKGQDIHDITGSIEKGHVFVFKKDEELAAVVMLLPAPSEWDRTLWGDDGHEE
                     SIYLHRLAVSRRFAGQGLGARVLQWAETGIHFPEKTRIRLDCVADSDALHSFYRRMGY
                     EFMGADASGYHLFEKEITAE*"
                     /label="yesJ CDS"
     gene            681336..681878
                     /gene="yesJ"
                     /locus_tag="BSU_06920"
                     /old_locus_tag="BSU06920"
                     /label="yesJ gene"
     downshifts      681845
                     /Source="Nicolas_upshifts"
                     /id="D342"
                     /incds=0
                     /nref=104
                     /ntot=251
                     /MaxReadThrough="3.04389"
                     /MaxDrop="4.5316"
                     /score="8.56782582"
                     /energy="-5.8"
                     /TU="U528"
                     /idTUdmin="U530"
                     /TUdmin=2
                     /isTUend="TRUE"
                     /label="downshifts"
     CDS             681901..682203
                     /gene="yesK"
                     /locus_tag="BSU_06930"
                     /old_locus_tag="BSU06930"
                     /function="16.1: Circulate"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 15849754, 16850406;
                     Product type m: membrane component"
                     /codon_start=1
                     /transl_table=11
                     /product="putative membrane component"
                     /protein_id="NP_388574.2"
                     /db_xref="EnsemblGenomes-Gn:BSU06930"
                     /db_xref="EnsemblGenomes-Tr:CAB12512"
                     /db_xref="GOA:O31514"
                     /db_xref="InterPro:IPR025434"
                     /db_xref="SubtiList:BG12845"
                     /db_xref="UniProtKB/Swiss-Prot:O31514"
                     /translation="MSFSKREAGDVWSILFVTGIVTACLFAGVSVLMRMRFPDKSRPE
                     WMLAGLIVLGVFAIWYSLVYVRGWEGAALGMLGFNVIFGAIAGYLIDKAIRRYRKR*"
                     /label="yesK CDS"
     gene            681901..682203
                     /gene="yesK"
                     /locus_tag="BSU_06930"
                     /old_locus_tag="BSU06930"
                     /label="yesK gene"
     promotor_-35    682246..682254
                     /Source="Nicolas_upshift_promotors"
                     /id="U531"
                     /multdbtbs="-"
                     /comp="M1"
                     /sig="SigH"
                     /pcomp="0.895104895104895"
                     /psig="0.895104895104895"
                     /xcortree=362
                     /SigmaFactorBS="gccgtctctcaacaggtcgaaattttcacagaccgGCAGGAA
                     TTttctttcgaaAGGAGAAATACATATTACTttaaaatgaaagcgttttccaaagcag
                     g"
                     /listShort="yesL, yesM"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    682265..682283
                     /Source="Nicolas_upshift_promotors"
                     /id="U531"
                     /multdbtbs="-"
                     /comp="M1"
                     /sig="SigH"
                     /pcomp="0.895104895104895"
                     /psig="0.895104895104895"
                     /xcortree=362
                     /SigmaFactorBS="gccgtctctcaacaggtcgaaattttcacagaccgGCAGGAA
                     TTttctttcgaaAGGAGAAATACATATTACTttaaaatgaaagcgttttccaaagcag
                     g"
                     /listShort="yesL, yesM"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        682271
                     /Source="Nicolas_upshifts"
                     /id="U531"
                     /multdbtbs="-"
                     /comp="M1"
                     /sig="SigH"
                     /pcomp="0.895104895104895"
                     /psig="0.895104895104895"
                     /xcortree=362
                     /SigmaFactorBS="gccgtctctcaacaggtcgaaattttcacagaccgGCAGGAA
                     TTttctttcgaaAGGAGAAATACATATTACTttaaaatgaaagcgttttccaaagcag
                     g"
                     /listShort="yesL, yesM"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             682318..682947
                     /gene="yesL"
                     /locus_tag="BSU_06940"
                     /old_locus_tag="BSU06940"
                     /function="16.1: Circulate"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 15849754, 16850406,
                     25441682; Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="putative permease or sensor of a three
                     componentsystem for pectin and rhamnogalacturonan
                     transport anddegradation"
                     /protein_id="NP_388575.1"
                     /db_xref="EnsemblGenomes-Gn:BSU06940"
                     /db_xref="EnsemblGenomes-Tr:CAB12513"
                     /db_xref="GOA:O31515"
                     /db_xref="InterPro:IPR006938"
                     /db_xref="SubtiList:BG12846"
                     /db_xref="UniProtKB/Swiss-Prot:O31515"
                     /translation="MLMIHSVANGLNHFCTWVMRLAYLNVLWILFSLAGLVVFGLMPA
                     TAAMFTVAREWAKGNTDAPVFSVFFRTFKKEWRASQILGLIVVTAALFLFADMRIAAQ
                     MDQPVLVNVFVSISLIFAFVVLYVFPVFSHFDVKIREVLSISFFIAFSRPAVTLLMAA
                     GAVGVLCLVLFHVTFLLFFSGSLLSLILTKLSFKAFRSMDQRQEKEKAA*"
                     /label="yesL CDS"
     gene            682318..682947
                     /gene="yesL"
                     /locus_tag="BSU_06940"
                     /old_locus_tag="BSU06940"
                     /label="yesL gene"
     CDS             682944..684677
                     /gene="yesM"
                     /locus_tag="BSU_06950"
                     /old_locus_tag="BSU06950"
                     /function="16.3: Control"
                     /function="16.12: Sense"
                     /experiment="publication(s) with functional evidences,
                     PMID:11717295, 23436677, 25441682"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 11717295, 23436677,
                     25441682; Product type rc: receptor"
                     /codon_start=1
                     /transl_table=11
                     /product="two-component sensor histidine kinase [YesN]"
                     /protein_id="NP_388576.1"
                     /db_xref="EnsemblGenomes-Gn:BSU06950"
                     /db_xref="EnsemblGenomes-Tr:CAB12514"
                     /db_xref="GOA:O31516"
                     /db_xref="InterPro:IPR003594"
                     /db_xref="InterPro:IPR003660"
                     /db_xref="InterPro:IPR004358"
                     /db_xref="InterPro:IPR005467"
                     /db_xref="InterPro:IPR010559"
                     /db_xref="InterPro:IPR033479"
                     /db_xref="InterPro:IPR036890"
                     /db_xref="SubtiList:BG12847"
                     /db_xref="UniProtKB/Swiss-Prot:O31516"
                     /translation="MKKRVAGWYRRMKIKDKLFVFLSLIMAVSFLFVYSGVQYAFHVY
                     DEQIYRKSSEVLRMSSERIEDELKKIEDVSYEIITDEQIQRILSMQNRDDTYDQYQMK
                     QELWDQLAGYASDEKYIDSIHVIDARGSEYSAGSSSSDLLQQEQEEVFKRAKAKSGRN
                     LWMTLGGSDPVLISARQIRSYHQLSLNGLGMVLIQVNVKQMIRDVPKDWGDSVGDIMI
                     ADQGGNLVYTAHASAHVPEAAKETLKHPGYDLIKKNGKRYFISYLQSSYQNWSYYNVI
                     PFDQMFAKISFMKTVIGTCFLLFFCVVLLFGRKIANSITEPIEQLVTAMKSVQHSGIE
                     AGVSLSLPEHTQDEAGMLNRHFTVMMKRINELMEENVEKQLIIKETELKALQAQINPH
                     FLYNTLESINWLAKANQQKQISKMVESLGFLLRNSIHMKKDIVTIQEEADIVRHYMTI
                     QRFRFEERLKFTLDIDDEVKHCLIPKLTLQPLAENAIQYALEPFTRPCAIRIQAKKAK
                     GCVCITVEDNGPGMDGRILESTGGRGIGLWNIRERISLTFGEPYGLRIHSEHEKGTRI
                     VITIPCRNEVV*"
                     /label="yesM CDS"
     gene            682944..684677
                     /gene="yesM"
                     /locus_tag="BSU_06950"
                     /old_locus_tag="BSU06950"
                     /label="yesM gene"
     CDS             684677..685783
                     /gene="yesN"
                     /locus_tag="BSU_06960"
                     /old_locus_tag="BSU06960"
                     /function="16.3: Control"
                     /experiment="publication(s) with functional evidences,
                     PMID:25441682"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 25441682; Product type r:
                     regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="two-component response regulator [YesM]"
                     /protein_id="NP_388577.1"
                     /db_xref="EnsemblGenomes-Gn:BSU06960"
                     /db_xref="EnsemblGenomes-Tr:CAB12515"
                     /db_xref="GOA:O31517"
                     /db_xref="InterPro:IPR001789"
                     /db_xref="InterPro:IPR009057"
                     /db_xref="InterPro:IPR011006"
                     /db_xref="InterPro:IPR018060"
                     /db_xref="SubtiList:BG12848"
                     /db_xref="UniProtKB/Swiss-Prot:O31517"
                     /translation="MYKILLADDERIILDGMAGIIEWESLGASLIGKAQNGHEAYEKI
                     VHKQPHIVITDVKMPGMDGLELIKKVSAVSPSVQFIVLSGFGEFEYAKEAMKYGVKHY
                     LLKPCNEQQIISSLEEIIAELKRQDVHKKKTAHLKHELDHIRSFAADQYLEGLIAGVA
                     QLSPPPSLAGKKIRLLILKGEQSIDAAAREALGSALTAVCSSGEWTVLAVEENAAEKV
                     AEVFADRKMAISQAGELRHAGQLFRDTAEASGDLHGSAVISKMIRLIADELGNPNLSL
                     KWAAKDMLFMNPDYLGKLFKQETGEKFSQYVTRVRLEHAMKQMKIRRDVSVSEIAEEI
                     GFGDNPKYFSLVFKKYTGLTPSEFRRKQGGASAG*"
                     /label="yesN CDS"
     gene            684677..685783
                     /gene="yesN"
                     /locus_tag="BSU_06960"
                     /old_locus_tag="BSU06960"
                     /label="yesN gene"
     downshifts      685737
                     /Source="Nicolas_upshifts"
                     /id="D343"
                     /incds=0
                     /nref=4
                     /ntot=43
                     /MaxReadThrough="0.271749999999999"
                     /MaxDrop="3.41261"
                     /score="3.12085441"
                     /energy="-10.3"
                     /TU="NA"
                     /idTUdmin="U531"
                     /TUdmin=1408
                     /isTUend="FALSE"
                     /label="downshifts"
     promotor_-35    685822..685825
                     /Source="Nicolas_upshift_promotors"
                     /id="U532"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.882117882117882"
                     /psig="0.992007992007992"
                     /xcortree=356
                     /SigmaFactorBS="tctctgtttttttgactttcgccactgttttttgaGTGTttc
                     gccctatccgaACGCTTTAAAATAAAATGTAagcacttacattaaaggggggattggt
                     t"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    685840..685859
                     /Source="Nicolas_upshift_promotors"
                     /id="U532"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.882117882117882"
                     /psig="0.992007992007992"
                     /xcortree=356
                     /SigmaFactorBS="tctctgtttttttgactttcgccactgttttttgaGTGTttc
                     gccctatccgaACGCTTTAAAATAAAATGTAagcacttacattaaaggggggattggt
                     t"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        685847
                     /Source="Nicolas_upshifts"
                     /id="U532"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.882117882117882"
                     /psig="0.992007992007992"
                     /xcortree=356
                     /SigmaFactorBS="tctctgtttttttgactttcgccactgttttttgaGTGTttc
                     gccctatccgaACGCTTTAAAATAAAATGTAagcacttacattaaaggggggattggt
                     t"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             685887..687170
                     /gene="yesO"
                     /locus_tag="BSU_06970"
                     /old_locus_tag="BSU06970"
                     /function="16.1: Circulate"
                     /experiment="publication(s) with functional evidences,
                     PMID:16781735, 17449691, 25658435"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 16781735, 17449691,
                     25658435; Product type lp: lipoprotein"
                     /codon_start=1
                     /transl_table=11
                     /product="pectin degradation byproducts (rhamnose
                     oligosaccharides)-binding lipoprotein"
                     /protein_id="NP_388578.2"
                     /db_xref="EnsemblGenomes-Gn:BSU06970"
                     /db_xref="EnsemblGenomes-Tr:CAB12516"
                     /db_xref="PDB:4R6K"
                     /db_xref="SubtiList:BG12849"
                     /db_xref="UniProtKB/Swiss-Prot:O31518"
                     /translation="MKKICYVLLSLVCVFLFSGCSAGEEASGKKEDVTLRIAWWGGQP
                     RHDYTTKVIELYEKKNPHVHIEAEFANWDDYWKKLAPMSAAGQLPDVIQMDTAYLAQY
                     GKKNQLEDLTPYTKDGTIDVSSIDENMLSGGKIDNKLYGFTLGVNVLSVIANEDLLKK
                     AGVSINQENWTWEDYEKLAYDLQEKAGVYGSNGMHPPDIFFPYYLRTKGERFYKEDGT
                     GLAYQDDQLFVDYFERQLRLVKAKTSPTPDESAQIKGMEDDFIVKGKSAITWNYSNQY
                     LGFARLTDSPLSLYLPPEQMQEKALTLKPSMLFSIPKSSEHKKEAAKFINFFVNNEEA
                     NQLIKGERGVPVSDKVADAIKPKLNEEETNIVEYVETASKNISKADPPEPVGSAEVIK
                     LLKDTSDQILYQKVSPEKAAKTFRKKANEILERNN*"
                     /label="yesO CDS"
     gene            685887..687170
                     /gene="yesO"
                     /locus_tag="BSU_06970"
                     /old_locus_tag="BSU06970"
                     /label="yesO gene"
     CDS             687167..688096
                     /gene="rhgP"
                     /locus_tag="BSU_06980"
                     /old_locus_tag="BSU06980"
                     /function="16.1: Circulate"
                     /experiment="publication(s) with functional evidences,
                     PMID:15849754, 16850406, 17449691"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 15849754, 16850406,
                     17449691; Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="rhamnogalacturonan permease"
                     /protein_id="NP_388579.1"
                     /db_xref="EnsemblGenomes-Gn:BSU06980"
                     /db_xref="EnsemblGenomes-Tr:CAB12517"
                     /db_xref="GOA:O31519"
                     /db_xref="InterPro:IPR000515"
                     /db_xref="InterPro:IPR035906"
                     /db_xref="SubtiList:BG12850"
                     /db_xref="UniProtKB/Swiss-Prot:O31519"
                     /translation="MTGNGADAMKKSRSIRKDNLAGYAFISPFIIGFLCFTVIPMGAS
                     LFLSFTSYDLFTAPKWIGLDNFKEMFTGDEKYWQSLKVTFTYVLAGVPLRLGFALFIA
                     VILNNAAKGTAIYRTLFYLPSIIGGSVAVAIMWRNIFGNDGVINALLFFVGIDQKILW
                     YQNPTSALWTLILLSVWQFGSSMLIFLAGLKNIPSSYLEAASVDGANRVQRFFKITLP
                     ILTPIIFFNLVMQTISAFMTFTPAYIISKGEGGPLDGTLLYSLYLFQRAFNYFQMGYA
                     SAMAWVMLVIVGLITLILFKTSSYWVHYESKEE*"
                     /label="rhgP CDS"
     gene            687167..688096
                     /gene="rhgP"
                     /locus_tag="BSU_06980"
                     /old_locus_tag="BSU06980"
                     /label="rhgP gene"
     CDS             688100..688990
                     /gene="rhgQ"
                     /locus_tag="BSU_06990"
                     /old_locus_tag="BSU06990"
                     /function="16.1: Circulate"
                     /experiment="publication(s) with functional evidences,
                     PMID:15849754, 16850406, 17449691"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 15849754, 16850406,
                     17449691; Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="rhamnogalacturonan permease"
                     /protein_id="NP_388580.1"
                     /db_xref="EnsemblGenomes-Gn:BSU06990"
                     /db_xref="EnsemblGenomes-Tr:CAB12518"
                     /db_xref="GOA:O31520"
                     /db_xref="InterPro:IPR000515"
                     /db_xref="InterPro:IPR035906"
                     /db_xref="SubtiList:BG12851"
                     /db_xref="UniProtKB/Swiss-Prot:O31520"
                     /translation="MEPVNQPVREAPVFERKKAGRVSPKRILFHVFTATLAVLLLYPV
                     IWLFVSSFKESASIFTTSHSLIPDPFILSNYAEGWKGIAGQPFLTFIKNSAIIVGLST
                     IGAVMSSAVIAYGFARIPFKGKKFWFACMMGTLMLPHEVLMIPQYIMFAKLDWLNSFK
                     PIVVPQFFGHAFFIFLMIQFIRTIPEELDEAARIDGCGRFACFWRIILPLIAPALATS
                     AIFSFYWKWEELIQPLLYLNKPELYPVSLALKLFLDTESASNWGAMFAMSAVSLLPVI
                     LVFFLFQKYIVQGISTTGLK*"
                     /label="rhgQ CDS"
     gene            688100..688990
                     /gene="rhgQ"
                     /locus_tag="BSU_06990"
                     /old_locus_tag="BSU06990"
                     /label="rhgQ gene"
     CDS             689006..690040
                     /gene="rhgH"
                     /locus_tag="BSU_07000"
                     /old_locus_tag="BSU07000"
                     /EC_number="3.2.1.172"
                     /function="16.6: Maintain"
                     /function="16.13: Shape"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 1b: Function from experimental evidences
                     in the studied species; PubMedId: 16781735, 17449691;
                     Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="rhamnogalacturonan hydrolase"
                     /protein_id="NP_388581.1"
                     /db_xref="EnsemblGenomes-Gn:BSU07000"
                     /db_xref="EnsemblGenomes-Tr:CAB12519"
                     /db_xref="GOA:O31521"
                     /db_xref="InterPro:IPR008928"
                     /db_xref="InterPro:IPR010905"
                     /db_xref="SubtiList:BG12852"
                     /db_xref="UniProtKB/Swiss-Prot:O31521"
                     /translation="MAQLIFDEEKVTSVIDRIVKRTFQMDFAWDWPGGVAFYGVAEAY
                     EATENEEYINLLKTWVDEQLEDGLPPLSINGVSIGHTLLFLHKVTGDDVYLETAAEMA
                     EYVLHKAPRFGEGILQHTVNAAEYVFPEQAWADTLMMAGLFMLRIGRVMEREDYFEDG
                     LRQFHGHEDVLQDPVTNLYYHAWDNKAQNHLSGIYWGRANGWAALTMAKALPLIEVTH
                     PSFMIIDGSLRDQLSALVRLQDESGLWHTILDDPDSYLEVSASAGIASALMSSGKLYT
                     KYVQKSLAAILDAVEEDGRVSRVSAGTAVMKNAEGYKQVPYKRIQGWGQGLALTFLAD
                     VLKTKKRLYQ*"
                     /label="rhgH CDS"
     gene            689006..690040
                     /gene="rhgH"
                     /locus_tag="BSU_07000"
                     /old_locus_tag="BSU07000"
                     /label="rhgH gene"
     CDS             690063..692348
                     /gene="rhgR"
                     /locus_tag="BSU_07010"
                     /old_locus_tag="BSU07010"
                     /function="16.3: Control"
                     /experiment="publication(s) with functional evidences,
                     PMID:16781735, 17449691, 19651770"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 16781735, 17449691,
                     19651770; Product type r: regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator (AraC/XylS family)"
                     /protein_id="NP_388582.1"
                     /db_xref="EnsemblGenomes-Gn:BSU07010"
                     /db_xref="EnsemblGenomes-Tr:CAB12520"
                     /db_xref="GOA:O31522"
                     /db_xref="InterPro:IPR009057"
                     /db_xref="InterPro:IPR014710"
                     /db_xref="InterPro:IPR018060"
                     /db_xref="InterPro:IPR018062"
                     /db_xref="SubtiList:BG12853"
                     /db_xref="UniProtKB/Swiss-Prot:O31522"
                     /translation="MKKQPQQKERVSRWKGTYFKRNFVFILLIACIPGLLTGGAIYFL
                     SIDKVEKELQRSHETQVAREVSRMDEKLGVLELALTQMAYDSSLMNGLAERDLEKDFT
                     FSYQLTKKLFLLRDQQPLIEQASIFLNSPRPLVLSPEYSALTEQEALRKYRSLLASDH
                     SIYWKRSGNQAMLIQLIPGAAEKPFGAIMLAVDPKEMESILQSLSPYPDGSALLLDQN
                     REVLFHEGEKDFEKTLLHEIKKQPAENGHFQMEWKGKVYSVSFGEMNRMHQQWTFVSA
                     APLSAITAPMVFLSKVIIVMLVICIGLAVCMTWYASKKIYRPIQHLLGLFTGGEKKTW
                     QASGQDEFKWIEKRWQDLSLESRKLQQQLLRQTPHMKKSFLQHLLQSDFYYDNEESLR
                     FRMEEAGWNIGGNVFHVLDLQVTGLRCEKSIFREGDEQLAVFTLTNIAEELAAKRVFQ
                     LSILDIGRLSVTVLVMKTNSSDLKAYITELARQFGDVTGLCLTSTLSSKTERVTEIPS
                     LFQDVKCGKSRRKFANRDQVIDLQADFPRDEQFAPYYPFELEKQIVQTIRLERKQEAK
                     ELIDGCMKELSEKAAIDRHVHSALIQLFSRIQEDILHSGLNPSELFQHRNPFLDISEL
                     REPNEAAAWLMDVVVTPYLSKLEGRKNRQQKQLAERVIAMIHEQYMADISLESCADAL
                     GMNSYTLSKAFKQVTGINFIDYVTQIRIEKAKELLVNTNKKIHDVSEEVGYRHNYFNR
                     IFKKQVGMPPGVFRQMYQETP*"
                     /label="rhgR CDS"
     gene            690063..692348
                     /gene="rhgR"
                     /locus_tag="BSU_07010"
                     /old_locus_tag="BSU07010"
                     /label="rhgR gene"
     CDS             692362..693060
                     /gene="rhgT"
                     /locus_tag="BSU_07020"
                     /old_locus_tag="BSU07020"
                     /EC_number="3.1.1.-"
                     /function="16.11: Scavenge (Catabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:16781735, 17449691, 17957779"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 16781735, 17449691,
                     17957779; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="rhamnogalacturonan acetylesterase"
                     /protein_id="NP_388583.1"
                     /db_xref="EnsemblGenomes-Gn:BSU07020"
                     /db_xref="EnsemblGenomes-Tr:CAB12521"
                     /db_xref="GOA:O31523"
                     /db_xref="InterPro:IPR013830"
                     /db_xref="InterPro:IPR036514"
                     /db_xref="SubtiList:BG12854"
                     /db_xref="UniProtKB/Swiss-Prot:O31523"
                     /translation="MMKKPIQVFLAGDSTVSDCPPHEAPMAGWGQVFGQLFSEGVLVR
                     NHAKGGASTNSFVEEGRLQAIAEHITQGDYLLIQFGHNDQKPRGTKPYSTFQQFLTLF
                     ADTAREKGAHPVFVTSVQRRRFDENGRIEHTLGEYPDAMKALAKELDVPVIDLLAKTK
                     VLYEAYGPEESKRLFVWFQPNEHPNYPDGIEDNTHFSEKGAMEVAKLVAEGIEELGLP
                     LKDHLVSREGKEHV*"
                     /label="rhgT CDS"
     gene            692362..693060
                     /gene="rhgT"
                     /locus_tag="BSU_07020"
                     /old_locus_tag="BSU07020"
                     /label="rhgT gene"
     CDS             693053..693715
                     /gene="yesU"
                     /locus_tag="BSU_07030"
                     /old_locus_tag="BSU07030"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 16781735, 17449691;
                     Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative enzyme"
                     /protein_id="NP_388584.1"
                     /db_xref="EnsemblGenomes-Gn:BSU07030"
                     /db_xref="EnsemblGenomes-Tr:CAB12522"
                     /db_xref="InterPro:IPR013320"
                     /db_xref="InterPro:IPR015305"
                     /db_xref="PDB:1OQ1"
                     /db_xref="SubtiList:BG12855"
                     /db_xref="UniProtKB/Swiss-Prot:O31524"
                     /translation="MYKEGACLYRNPLRSKSDVKDWRMEGGGQISFDDHSLHLSHVQD
                     EAHFVFWCPETFPDGIIVTWDFSPIEQPGLCMLFFAAAGIRGEDLFDPSLRKRTGTYP
                     EYHSGDINALHLSYFRRKYAEERAFRTCNLRKSRGFHLAAMGADPLPSPDDADSPYRM
                     KLIKDKGYVHFSINGLPILEWMDDGSTYGPVLTKGKIGFRQMAPMKAVYRDFAVHQAV
                     RR*"
                     /label="yesU CDS"
     gene            693053..693715
                     /gene="yesU"
                     /locus_tag="BSU_07030"
                     /old_locus_tag="BSU07030"
                     /label="yesU gene"
     CDS             693712..694338
                     /gene="yesV"
                     /locus_tag="BSU_07040"
                     /old_locus_tag="BSU07040"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 15849754, 16850406,
                     17449691; Product type m: membrane component"
                     /codon_start=1
                     /transl_table=11
                     /product="putative integral inner membrane component"
                     /protein_id="NP_388585.1"
                     /db_xref="EnsemblGenomes-Gn:BSU07040"
                     /db_xref="EnsemblGenomes-Tr:CAB12523"
                     /db_xref="InterPro:IPR006938"
                     /db_xref="SubtiList:BG12856"
                     /db_xref="UniProtKB/Swiss-Prot:O31525"
                     /translation="MKTTVTDALYAGCEAVVKIAWLNGLWLLFTLLGGVLFGWAPSTA
                     AMCAVIRKWLMGQKDVPIFSLFLDTYKKEFLKVNAIGLAFSALLLILSANYHYFSAST
                     NWLSFAVTSCTLLAGLLYIIALMYVFPLYVHYQLPLRKYIPQALLFGAMRPLTTGCML
                     IGCGFVLYLLYTLPGLIPFYGPCLFGLVLMFFALRGFQKTEAQHHQAG*"
                     /label="yesV CDS"
     gene            693712..694338
                     /gene="yesV"
                     /locus_tag="BSU_07040"
                     /old_locus_tag="BSU07040"
                     /label="yesV gene"
     CDS             694459..696321
                     /gene="rhgW"
                     /locus_tag="BSU_07050"
                     /old_locus_tag="BSU07050"
                     /EC_number="4.2.2.23"
                     /function="16.11: Scavenge (Catabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:16781735, 17449691, 19193638"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 16781735, 17449691,
                     19193638; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="rhamnogalacturonan endolyase"
                     /protein_id="NP_388586.1"
                     /db_xref="EnsemblGenomes-Gn:BSU07050"
                     /db_xref="EnsemblGenomes-Tr:CAB12524"
                     /db_xref="GOA:O31526"
                     /db_xref="InterPro:IPR013783"
                     /db_xref="InterPro:IPR034641"
                     /db_xref="PDB:2Z8R"
                     /db_xref="PDB:2Z8S"
                     /db_xref="PDB:2ZUX"
                     /db_xref="SubtiList:BG12857"
                     /db_xref="UniProtKB/Swiss-Prot:O31526"
                     /translation="MRRSCLMIRRRKRMFTAVTLLVLLVMGTSVCPVKAEGAARQMEA
                     LNRGLVAVKTDGGIFVSWRFLGTENASVLFNVYRDGQKLNAAPVKTTNYVDKNGSAGS
                     TYTVRAVVNGTEQPASEKASVWAQPYHSVPLDKPAGGTTPKGESYTYSANDASVGDVD
                     GDGQYELILKWDPSNSKDNSQDGYTGDVLIDAYKLDGTKLWRINLGKNIRAGAHYTQF
                     MVYDLDGDGKAEVAMKTADGTKDGTGKVIGNANADYRNEQGRVLSGPEYLTVFQGSTG
                     KELVTANFEPARGNVSDWGDSYGNRVDRFLAGIAYLDGQRPSLIMTRGYYAKTMLVAY
                     NFRDGKLSKLWTLDSSKSGNEAFAGQGNHNLSIADVDGDGKDEIIFGSMAVDHDGKGM
                     YSTGLGHGDALHTGDLDPGRPGLEVFQVHEDKNAKYGLSFRDAATGKILWGVYAGKDV
                     GRGMAADIDPRYPGQEVWANGSLYSAKGVKIGSGVPSSTNFGIWWDGDLLREQLDSNR
                     IDKWDYQNGVSKNMLTASGAAANNGTKATPTLQADLLGDWREEVVWRTEDSSALRIYT
                     TTIPTEHRLYTLMHDPVYRLGIAWQNIAYNQPPHTSFFLGDGMAEQPKPNMYTP*"
                     /label="rhgW CDS"
     gene            694459..696321
                     /gene="rhgW"
                     /locus_tag="BSU_07050"
                     /old_locus_tag="BSU07050"
                     /label="rhgW gene"
     promotor_no_box 694499..694599
                     /Source="Nicolas_upshift_promotors"
                     /id="U533"
                     /multdbtbs="-"
                     /comp="M13"
                     /sig="Sig-"
                     /pcomp="0.59040959040959"
                     /psig="0.000999000999001"
                     /xcortree=1487
                     /SigmaFactorBS="tgtttaccgctgttacgttgctggtcttgttggtgatgggaa
                     cctctgtatgtcctgtgaaagctgaaggggcagcgcggcagatggaagcgctgaaccg
                     g"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_no_box"
     upshifts        694559
                     /Source="Nicolas_upshifts"
                     /id="U533"
                     /multdbtbs="-"
                     /comp="M13"
                     /sig="Sig-"
                     /pcomp="0.59040959040959"
                     /psig="0.000999000999001"
                     /xcortree=1487
                     /SigmaFactorBS="tgtttaccgctgttacgttgctggtcttgttggtgatgggaa
                     cctctgtatgtcctgtgaaagctgaaggggcagcgcggcagatggaagcgctgaaccg
                     g"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     upshifts        complement(695097)
                     /Source="Nicolas_upshifts"
                     /id="U534"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp="0.995004995004995"
                     /psig="0.995004995004995"
                     /xcortree=1380
                     /SigmaFactorBS="cattgccacttctgctttTCCGTCACCAtcaaggtcatacAC
                     CATAAACTGGGTGTAGTGcgcgcccgctctgatgtttttgccgagattgatccgccat
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-10    complement(695098..695117)
                     /Source="Nicolas_upshift_promotors"
                     /id="U534"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp="0.995004995004995"
                     /psig="0.995004995004995"
                     /xcortree=1380
                     /SigmaFactorBS="cattgccacttctgctttTCCGTCACCAtcaaggtcatacAC
                     CATAAACTGGGTGTAGTGcgcgcccgctctgatgtttttgccgagattgatccgccat
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     promotor_-35    complement(695130..695139)
                     /Source="Nicolas_upshift_promotors"
                     /id="U534"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp="0.995004995004995"
                     /psig="0.995004995004995"
                     /xcortree=1380
                     /SigmaFactorBS="cattgccacttctgctttTCCGTCACCAtcaaggtcatacAC
                     CATAAACTGGGTGTAGTGcgcgcccgctctgatgtttttgccgagattgatccgccat
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             696367..698205
                     /gene="rhgX"
                     /locus_tag="BSU_07060"
                     /old_locus_tag="BSU07060"
                     /EC_number="4.2.2.24"
                     /function="16.11: Scavenge (Catabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:16781735, 17449691, 19193638"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 16781735, 17449691,
                     19193638; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="rhamnogalacturonan exolyase"
                     /protein_id="NP_388587.1"
                     /db_xref="EnsemblGenomes-Gn:BSU07060"
                     /db_xref="EnsemblGenomes-Tr:CAB12525"
                     /db_xref="GOA:O31527"
                     /db_xref="InterPro:IPR013517"
                     /db_xref="InterPro:IPR013783"
                     /db_xref="InterPro:IPR034641"
                     /db_xref="PDB:2ZUY"
                     /db_xref="SubtiList:BG12858"
                     /db_xref="UniProtKB/Swiss-Prot:O31527"
                     /translation="MKPKKRQMEYLTRGLIAVQTEQGVFVSWRFLGTDHETTAFHLYR
                     DGKRITRDPIAESTNFLDQNGTADSVYQVAAVNKGREEKLSKKARVWQENVLEVPLAK
                     PEGGVTPDGKPYTYSANDASVGDIDGDGEYEMILKWDPSNSKDNAHDGYTGEVLIDAY
                     KLDGTFLWRINLGRNIRAGAHYTQFMVYDLDGDGKAEIAMKTADGTTDGKGHIIGDEQ
                     ADFRNEQGRILSGPEYLTVFKGETGEALTTVEYEPPRGKLEDWGDGYGNRMDRFLAGT
                     AYLDGERPSLVMARGYYTRTVLVAYDFRNGRLKKRWVFDSNQPGHEAYAGQGNHSLSV
                     ADVDGDGKDEIIYGAMAVDHDGTGLYSTGLGHGDAMHVGDLDPSRKGLEVFQVHEDAT
                     KPYGLSLRDAGTGEILWGVHAGTDVGRGMAAHIDPSYKGSLVWGIDPPGNDGMSYGLF
                     TSKGEKISDKAPSSANFAIWWDGDLVRELLDHDWDGTIGRPKIEKWDAENGCLKTIFQ
                     PAGVLSNNGTKGNPVLQANLFGDWREEVIWRTEDSSALRIYTTTHLTRHCFYTLMHDP
                     VYRLGIAWQNTAYNQPPHTSFYLGTGMKKPPKPALYIAGSKAEAPL*"
                     /label="rhgX CDS"
     gene            696367..698205
                     /gene="rhgX"
                     /locus_tag="BSU_07060"
                     /old_locus_tag="BSU07060"
                     /label="rhgX gene"
     CDS             698363..699016
                     /gene="yesY"
                     /locus_tag="BSU_07070"
                     /old_locus_tag="BSU07070"
                     /EC_number="3.1.1.-"
                     /function="16.11: Scavenge (Catabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:16781735, 17449691"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 16781735, 17449691;
                     Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="rhamnogalacturonan acetylesterase"
                     /protein_id="NP_388588.1"
                     /db_xref="EnsemblGenomes-Gn:BSU07070"
                     /db_xref="EnsemblGenomes-Tr:CAB12526"
                     /db_xref="GOA:O31528"
                     /db_xref="InterPro:IPR013830"
                     /db_xref="InterPro:IPR036514"
                     /db_xref="SubtiList:BG12859"
                     /db_xref="UniProtKB/Swiss-Prot:O31528"
                     /translation="MANHIYLAGDSTVQTYGDSTNQGGWGQFLGSHLPEHIQVINRAI
                     GGRSSKTFVEEGRLQAILDVIEPDDWLFVQMGHNDASKNKPERYTEPYTTYKQYLKQY
                     IAGAREKGAHPLLITPVARFHYENGVFLNDFPDYCIAMKQTAAEENVQLIDLMEKSLA
                     FFTEKGEEKVYTYFMISEGINDYTHFTKKGANEMAKLVAKGIKELGLPLTESIIKER*
                     "
                     /label="yesY CDS"
     gene            698363..699016
                     /gene="yesY"
                     /locus_tag="BSU_07070"
                     /old_locus_tag="BSU07070"
                     /label="yesY gene"
     CDS             699024..701015
                     /gene="rhgZ"
                     /locus_tag="BSU_07080"
                     /old_locus_tag="BSU07080"
                     /EC_number="3.2.1.67"
                     /function="16.11: Scavenge (Catabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:16781735, 17056685, 17449691, 17485082"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 16781735, 17056685,
                     17449691, 17485082; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="beta-galacturonidase"
                     /protein_id="NP_388589.1"
                     /db_xref="EnsemblGenomes-Gn:BSU07080"
                     /db_xref="EnsemblGenomes-Tr:CAB12527"
                     /db_xref="GOA:O31529"
                     /db_xref="InterPro:IPR003476"
                     /db_xref="InterPro:IPR013529"
                     /db_xref="InterPro:IPR013738"
                     /db_xref="InterPro:IPR013739"
                     /db_xref="InterPro:IPR017853"
                     /db_xref="InterPro:IPR029062"
                     /db_xref="SubtiList:BG12860"
                     /db_xref="UniProtKB/Swiss-Prot:O31529"
                     /translation="MRKLYHGACYYPELWDEETIQQDIDIMREVGVNVVRIGEFAWSV
                     MEPEEGKIDVGFFKEIIARLYDSGIETIMCTPTPTPPIWFSHGRPERMHANEKREIMG
                     HGSRQHACTNNPYFRKKAAIITTAIAKELGRLPGLIGWQLDNEFKCHVAECMCETCLR
                     LWHDWLKNRYGVIERLNEAWGTDVWSETYQTFEQVPQPGPAPFLHHASLRTMYQLFSM
                     EMIASFADEQAKIIRCYSDAPITHNGSVMFSVDNERMFQNLDFASYDTYASQENASAF
                     LLNCDLWRNLKQGRPFWILETSPSYAASLESSAYPHADGYLQAEAVSSYALGSQGFCY
                     WLWRQQRSGSEISHGSVLSAWGEPTIGYQNVLAVERARKEIEPIILSTEPVQAEAAMT
                     YSDRAKAFIKTEPHRGLRHRSLVTHFYERILNTGIHRDLIPEGAPLDGYRLLFTPFVP
                     YLSSEFIKKASAFAEAGGIWITGPLTGGRTCEHTIHTDCGLGELEKTSGIKTLFTFPM
                     NENVNTGKAFGITAPLGLWSAVFDTESGNTLGTVEAGPGAGHAFLTERNYGEGKIVML
                     GSLPSGKEGDAMLEALVRHYAEEAVISSRSDVTPGTIVAPRIGENGLVWIVVNMDGKG
                     GSVTLPESGTDLLTHRLEKAGRLAVGPHEYRVIQFDNHS*"
                     /label="rhgZ CDS"
     gene            699024..701015
                     /gene="rhgZ"
                     /locus_tag="BSU_07080"
                     /old_locus_tag="BSU07080"
                     /label="rhgZ gene"
     CDS             701059..703632
                     /gene="yetA"
                     /locus_tag="BSU_07090"
                     /old_locus_tag="BSU07090"
                     /EC_number="3.1.-.-"
                     /function="16.11: Scavenge (Catabolism)"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative enzyme"
                     /protein_id="NP_388590.2"
                     /db_xref="EnsemblGenomes-Gn:BSU07090"
                     /db_xref="EnsemblGenomes-Tr:CAB12528"
                     /db_xref="SubtiList:BG12861"
                     /db_xref="UniProtKB/Swiss-Prot:O31530"
                     /translation="MKKIKWLSGQPKVTSGVTWGMPWKKGELKKGDRLALMNENAETR
                     YVQSEPSAYWPDGSIKWTKHAAVFGGQENQSFTVHKREVPQPTESLSILETEHDIQVD
                     TGALVCTIHKTGSDFIQSLQINGKPIAAGGRLVAIRETRKESAAKMVLLHERSVSFIK
                     RAAIEQSGPVKAVVKIEGVHVLHKTYEEWLPFVIRLTFYAGLSEIGLVHTQLIDRSGK
                     LEFVKGLGIEFDLFLEGEPYNRHFRFAGEKGMYKEPAQLFGTRKFNERYPLYEKQING
                     EMLSPDEEHKEWFAHGTQNAVWDDVKIVQDSSDHYSLSKRTGKDYAWVGMLHGSRAKG
                     LCYAGGKNGGVALGLRYFFEKYPSALEITGLAGSRPKMTIWLWPPDGEAMDLRHYTGN
                     THVASAYEGFDEMRSDPTGIANTNEISLACFSHMPSDEVLNALADKWQAPPLIVCEPD
                     VYYESKALGVWSIIDTSHPLKKELEEQLDAAFLFYKKEVEQRRWYGFWHYGDVMHTYD
                     PIRHMWRYDLGGYAWQNNELVPTLWLWQAFFRSGREDIFRMAEAMTRHTSETDSFHLG
                     EYAGLGSRHNVVHWGCGCKEARISMAGLHKFYYYLTGDDRTGDLLTEVKDADYALVKT
                     DPMRAFYEKGKHPTHARTGPDWAAFCSNWLAEWERTENSEYLKKIETGINCLKRLPLR
                     LLSGPTFEYDPATSMLHHMGDGIAGGYHMIIAFGAPQVWMELAELLDDWEWEDMLSEF
                     GEFYTLSDEEKRKKSGGALHDGHFHWPMFAAGMTAYAARKKQDPHLAAKAWNLLLEDK
                     LSHTPLPIKPERIETWTQLEELPWVTTNTVSQWCLNVIAALELIGDSLPAKKETSGKK
                     G*"
                     /label="yetA CDS"
     gene            701059..703632
                     /gene="yetA"
                     /locus_tag="BSU_07090"
                     /old_locus_tag="BSU07090"
                     /label="yetA gene"
     promotor_-10    complement(702381..702399)
                     /Source="Nicolas_upshift_promotors"
                     /id="U535"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.916083916083916"
                     /psig="0.916083916083916"
                     /xcortree=961
                     /SigmaFactorBS="tgtcaatgatgctccataccccgagtgcttttgaTTCGTAat
                     agacgtccggctcGCATACAATGAGCGGGGGCgcctgccatttgtcagccagcgcatt
                     g"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(702394)
                     /Source="Nicolas_upshifts"
                     /id="U535"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.916083916083916"
                     /psig="0.916083916083916"
                     /xcortree=961
                     /SigmaFactorBS="tgtcaatgatgctccataccccgagtgcttttgaTTCGTAat
                     agacgtccggctcGCATACAATGAGCGGGGGCgcctgccatttgtcagccagcgcatt
                     g"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(702415..702420)
                     /Source="Nicolas_upshift_promotors"
                     /id="U535"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.916083916083916"
                     /psig="0.916083916083916"
                     /xcortree=961
                     /SigmaFactorBS="tgtcaatgatgctccataccccgagtgcttttgaTTCGTAat
                     agacgtccggctcGCATACAATGAGCGGGGGCgcctgccatttgtcagccagcgcatt
                     g"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             703754..705262
                     /gene="lplA"
                     /locus_tag="BSU_07100"
                     /old_locus_tag="BSU07100"
                     /function="16.1: Circulate"
                     /experiment="publication(s) with functional evidences,
                     PMID:7921237"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 7921237; Product type lp:
                     lipoprotein"
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein transporter binding protein for
                     alpha-galacturonides"
                     /protein_id="NP_388591.1"
                     /db_xref="EnsemblGenomes-Gn:BSU07100"
                     /db_xref="EnsemblGenomes-Tr:CAB12529"
                     /db_xref="GOA:P37966"
                     /db_xref="InterPro:IPR006059"
                     /db_xref="SubtiList:BG10434"
                     /db_xref="UniProtKB/Swiss-Prot:P37966"
                     /translation="MKIRMRKKWMALPLAAMMIAGCSHSETSNSASGSKDTIKIMAPL
                     LSPESPSDKSPSLKALEKYTGKEIKVTWVPDSSYNDKFNIVMASGEMPHAIVIKDKSA
                     GFIKSVKAGAFWELSPYLKDYKNLSQADEKILKNSSVNGEVYGIYRTRDLIRACMIIR
                     TDWLKNVGLDMPETLDDFYEVLKAFKEKDPDGNGKDDTYGMVVPKWMGLGNGSPWDVL
                     QIWFGAPNRYGVENGKLIPDFTTKEYMDALTFFKKLYDEGLINKDFAVMDSAKWNDPV
                     VKGKAGVIVDTGSRASQIQSAMEEADESNKDIIDIVGSLEGPNGKRTFPTSGYSGMIT
                     IPKSSVKTEKELKEVLSFLDKMNDKEAQILTNNGVKGRNYELKDGVFTSLEKNNKSLL
                     YEHEGLAQFSMSIPKSEYYIEDQKTKLFQHRKDIITEGEKIAVFNPAESLVSDVYTQK
                     GAQLDNIILDARTQFIIGEIDEKGFDDAVELWKKSGGNELMKDLNKLYQSSK*"
                     /label="lplA CDS"
     gene            703754..705262
                     /gene="lplA"
                     /locus_tag="BSU_07100"
                     /old_locus_tag="BSU07100"
                     /label="lplA gene"
     CDS             705317..706273
                     /gene="lplB"
                     /locus_tag="BSU_07110"
                     /old_locus_tag="BSU07110"
                     /function="16.1: Circulate"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 2b: Function from indirect experimental
                     evidences (e.g. phenotypes); PubMedId: 10869078, 15849754,
                     16850406; Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter (permease) for
                     alpha-galacturonides"
                     /protein_id="NP_388592.1"
                     /db_xref="EnsemblGenomes-Gn:BSU07110"
                     /db_xref="EnsemblGenomes-Tr:CAB12530"
                     /db_xref="GOA:P39128"
                     /db_xref="InterPro:IPR000515"
                     /db_xref="InterPro:IPR035906"
                     /db_xref="SubtiList:BG10435"
                     /db_xref="UniProtKB/Swiss-Prot:P39128"
                     /translation="METVPKKRDAPVLTAGKGISWMAALKRDKWLYLLLIPGLLYFLI
                     FKYLPMWGVLIAFKDYSPYLGFWKSEWVGFDYFKDFFMNPDFFRLLRNTLMLASLDLL
                     FAFPAPLILALLLNEVRKAVYKRCIQTFIYVPHFVSWTIVVSITFVFFTVDTGVINKL
                     IMSLTGEQISFLSDADWFRPMIVMQSIWKETGWGTILFLAALATVDQEQYEAAIMDGA
                     GRFRRMWHITLPAIRSTIIVLLILRIGSFLNLGFEQVYLMTNSLNRSVADIFDTYVYM
                     MGITQGAYSYSTAVGLFKSVVGIILIFGANYIAKKFDQEGLF*"
                     /label="lplB CDS"
     gene            705317..706273
                     /gene="lplB"
                     /locus_tag="BSU_07110"
                     /old_locus_tag="BSU07110"
                     /label="lplB gene"
     downshifts      complement(705591)
                     /Source="Nicolas_upshifts"
                     /id="D344"
                     /incds=1
                     /nref=1
                     /ntot=8
                     /MaxReadThrough="1.59638"
                     /MaxDrop="4.19822"
                     /score="13.9744253"
                     /energy="-20.3"
                     /TU="NA"
                     /idTUdmin="U538"
                     /TUdmin=2068
                     /isTUend="FALSE"
                     /label="downshifts"
     promotor_no_box complement(705617..705717)
                     /Source="Nicolas_upshift_promotors"
                     /id="U536"
                     /multdbtbs="-"
                     /comp="M21"
                     /sig="Sig-"
                     /pcomp="0.544455544455544"
                     /psig="0.002997002997003"
                     /xcortree=1476
                     /SigmaFactorBS="ggtacgtaaataaaggtttggatacatcttttatacacggcc
                     tttcttacctcattcaaaagcagagccaaaatgagaggcgcgggaaaggcaaacaaaa
                     g"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_no_box"
     upshifts        complement(705657)
                     /Source="Nicolas_upshifts"
                     /id="U536"
                     /multdbtbs="-"
                     /comp="M21"
                     /sig="Sig-"
                     /pcomp="0.544455544455544"
                     /psig="0.002997002997003"
                     /xcortree=1476
                     /SigmaFactorBS="ggtacgtaaataaaggtttggatacatcttttatacacggcc
                     tttcttacctcattcaaaagcagagccaaaatgagaggcgcgggaaaggcaaacaaaa
                     g"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             706287..707174
                     /gene="lplC"
                     /locus_tag="BSU_07120"
                     /old_locus_tag="BSU07120"
                     /function="16.1: Circulate"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 2b: Function from indirect experimental
                     evidences (e.g. phenotypes); PubMedId: 10869078, 15849754,
                     16850406; Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter (permease) for
                     alpha-galacturonides"
                     /protein_id="NP_388593.1"
                     /db_xref="EnsemblGenomes-Gn:BSU07120"
                     /db_xref="EnsemblGenomes-Tr:CAB12531"
                     /db_xref="GOA:P39129"
                     /db_xref="InterPro:IPR000515"
                     /db_xref="InterPro:IPR035906"
                     /db_xref="SubtiList:BG10857"
                     /db_xref="UniProtKB/Swiss-Prot:P39129"
                     /translation="MAEIHTMHNTKAGRVFDVCNILFLGGVGAITILPFLYIIAGSFA
                     TEAELAQRSFFIFPKTFTLDAYKYVFSTPTFLRSMGVSIFITVVGTAVQLFFTFTMAY
                     PLAKRHVKGRNLLLNLVIFSMLFSGGMIPTYLVVKSLGLLDTYWALILPMAINPFNLI
                     IIKNFFQQLPRELEESAKIDGCSEIGVFWRIALPLSKPVIATFALFYAVGIWNDFFHA
                     LLYINDSAKWPLQMVLRQVTILSDLTATNGDTMQNAVPPEQGIKLAVIVIATLPILAV
                     YPFLQKHFAKGMLIGSVKG*"
                     /label="lplC CDS"
     gene            706287..707174
                     /gene="lplC"
                     /locus_tag="BSU_07120"
                     /old_locus_tag="BSU07120"
                     /label="lplC gene"
     promotor_-35    706921..706926
                     /Source="Nicolas_upshift_promotors"
                     /id="U537"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.99100899100899"
                     /psig="0.99100899100899"
                     /xcortree=1069
                     /SigmaFactorBS="ttgcgacctttgcgctgttttatgcggtcgggatttGGAATG
                     atttcttccacgctcTCTTATATATCAATGACAGtgcaaaatggccgctgcaaatggt
                     g"
                     /listShort="lplD, S248, yetF"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    706942..706960
                     /Source="Nicolas_upshift_promotors"
                     /id="U537"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.99100899100899"
                     /psig="0.99100899100899"
                     /xcortree=1069
                     /SigmaFactorBS="ttgcgacctttgcgctgttttatgcggtcgggatttGGAATG
                     atttcttccacgctcTCTTATATATCAATGACAGtgcaaaatggccgctgcaaatggt
                     g"
                     /listShort="lplD, S248, yetF"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        706945
                     /Source="Nicolas_upshifts"
                     /id="U537"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.99100899100899"
                     /psig="0.99100899100899"
                     /xcortree=1069
                     /SigmaFactorBS="ttgcgacctttgcgctgttttatgcggtcgggatttGGAATG
                     atttcttccacgctcTCTTATATATCAATGACAGtgcaaaatggccgctgcaaatggt
                     g"
                     /listShort="lplD, S248, yetF"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             707183..708523
                     /gene="lplD"
                     /locus_tag="BSU_07130"
                     /old_locus_tag="BSU07130"
                     /EC_number="3.2.1.67"
                     /function="16.11: Scavenge (Catabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:23416295"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 23416295; Product type e:
                     enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-galacturonidase"
                     /protein_id="NP_388594.1"
                     /db_xref="EnsemblGenomes-Gn:BSU07130"
                     /db_xref="EnsemblGenomes-Tr:CAB12532"
                     /db_xref="GOA:P39130"
                     /db_xref="InterPro:IPR001088"
                     /db_xref="InterPro:IPR015955"
                     /db_xref="InterPro:IPR019802"
                     /db_xref="InterPro:IPR022616"
                     /db_xref="InterPro:IPR036291"
                     /db_xref="PDB:3FEF"
                     /db_xref="SubtiList:BG10858"
                     /db_xref="UniProtKB/Swiss-Prot:P39130"
                     /translation="MFHISTLDQIKIAYIGGGSQGWARSLMSDLSIDERMSGTVALYD
                     LDFEAAQKNEVIGNHSGNGRWRYEAVSTLKKALSAADIVIISILPGSLDDMEVDVHLP
                     ERCGIYQSVGDTVGPGGIIRGLRAVPIFAEIARAIRDYAPESWVINYTNPMSVCTRVL
                     YKVFPGIKAIGCCHEVFGTQKLLAEMVTERLGIEVPRREDIRVNVLGINHFTWITKAS
                     YRHIDLLPIFREFSAHYGESGYELEGECWRDSVFCSAHRVAFDLFETYGAIPAAGDRH
                     LAEFLPGPYLKQPEVWKFHLTPISFRKQDRAEKRQETERLIVQQRGVAEKASGEEGVN
                     IIAALLGLGELVTNVNMPNQGQVLNLPIQAIVETNAFITRNRVQPILSGALPKGVEML
                     AARHISNQEAVADAGLTKDTGLAFQAFLNDPLVQIDRSDAEQLFNDMLQCIMQS*"
                     /label="lplD CDS"
     gene            707183..708523
                     /gene="lplD"
                     /locus_tag="BSU_07130"
                     /old_locus_tag="BSU07130"
                     /label="lplD gene"
     S_feature       complement(707617..709308)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_783392_785083_c"
                     /HighExp="H2O2, dia15, Paraq, Lbexp, LBGexp, Salt, LPhT,
                     GM 25, G150, dia0"
                     /AntisenseName="yetF"
                     /AntisenseCor="-0.25986434675098202"
                     /AntisenseRegPval="-4.8"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.999"
                     /TUlongSig="SigA"
                     /TUlongPSig="0.993"
                     /label="S247"
     S_feature       708524..708605
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_784299_784380"
                     /HighExp="S5, S4, S6, S3, S7, S8, BT, LoTm, B36, G150"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigEF"
                     /TUshortPSig="0.991"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S248"
     CDS             708606..709301
                     /gene="yetF"
                     /locus_tag="BSU_07140"
                     /old_locus_tag="BSU07140"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; Product type m: membrane
                     component"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved membrane protein"
                     /protein_id="NP_388595.1"
                     /db_xref="EnsemblGenomes-Gn:BSU07140"
                     /db_xref="EnsemblGenomes-Tr:CAB12533"
                     /db_xref="GOA:O31533"
                     /db_xref="InterPro:IPR007353"
                     /db_xref="InterPro:IPR023090"
                     /db_xref="PDB:3C6F"
                     /db_xref="SubtiList:BG12862"
                     /db_xref="UniProtKB/Swiss-Prot:O31533"
                     /translation="MGNYLSVAVELVCGLGILFIILKLLGKTQFSQITPFDFISALIL
                     GELVGNAVYDHEIKIKEIIFASLLWGVLIYIIEFITQKMKSSRKFLEGEPNIVIRKGE
                     LQYKVMKKNKIDINQLQSLLRQAGSFSIQEVEYAILETNGMVSVLPKSDFDKPTNKDL
                     QIPSKSVSLPITLIIDGEIVRDNLKEAGVDEQWLKQELKKKNIDKTEDVLFAEWHKNK
                     PLYTVTYEQSRST*"
                     /label="yetF CDS"
     gene            708606..709301
                     /gene="yetF"
                     /locus_tag="BSU_07140"
                     /old_locus_tag="BSU07140"
                     /label="yetF gene"
     downshifts      709299
                     /Source="Nicolas_upshifts"
                     /id="D345"
                     /incds=0
                     /nref=2
                     /ntot=24
                     /MaxReadThrough="1.32891"
                     /MaxDrop="3.45213"
                     /score="-0.176154378"
                     /energy="-7.1"
                     /TU="NA"
                     /idTUdmin="U537"
                     /TUdmin=0
                     /isTUend="TRUE"
                     /label="downshifts"
     CDS             complement(709338..709664)
                     /gene="hmoA"
                     /locus_tag="BSU_07150"
                     /old_locus_tag="BSU07150"
                     /EC_number="1.14.14.18"
                     /function="16.11: Scavenge (Catabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:20180905, 21764939, 21873409"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 20180905, 21764939,
                     21873409; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="heme-degrading monooxygenase"
                     /protein_id="NP_388596.2"
                     /db_xref="EnsemblGenomes-Gn:BSU07150"
                     /db_xref="EnsemblGenomes-Tr:CAB12534"
                     /db_xref="GOA:O31534"
                     /db_xref="InterPro:IPR007138"
                     /db_xref="InterPro:IPR011008"
                     /db_xref="SubtiList:BG12863"
                     /db_xref="UniProtKB/Swiss-Prot:O31534"
                     /translation="MFVQLRKMTVKEGFADKVIERFSAEGIIEKQEGLIDVTVLEKNV
                     RRGDEEVVVMIRWESEDHWKQWEKSDAHIAGHKANKGKPKPDYLISTEVSMYHVRAVK
                     QGTYNQ*"
                     /label="hmoA CDS"
     gene            complement(709338..709664)
                     /gene="hmoA"
                     /locus_tag="BSU_07150"
                     /old_locus_tag="BSU07150"
                     /label="hmoA gene"
     downshifts      complement(709353)
                     /Source="Nicolas_upshifts"
                     /id="D346"
                     /incds=0
                     /nref=194
                     /ntot=248
                     /MaxReadThrough="4.01189"
                     /MaxDrop="6.29183"
                     /score="9.23596913"
                     /energy="-9.1"
                     /TU="U538"
                     /idTUdmin="U539"
                     /TUdmin=0
                     /isTUend="TRUE"
                     /label="downshifts"
     downshifts      709651
                     /Source="Nicolas_upshifts"
                     /id="D347"
                     /incds=1
                     /nref=1
                     /ntot=45
                     /MaxReadThrough="1.96802"
                     /MaxDrop="3.46057"
                     /score="-7.34187128"
                     /energy="-5"
                     /TU="NA"
                     /idTUdmin="U537"
                     /TUdmin=352
                     /isTUend="FALSE"
                     /label="downshifts"
     promotor_-10    complement(709687..709706)
                     /Source="Nicolas_upshift_promotors"
                     /id="U538"
                     /multdbtbs="-"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp="0.604395604395604"
                     /psig="0.999000999001"
                     /xcortree=2117
                     /SigmaFactorBS="tgttgcgcacggcggttcgattccgccctgcgctttcTTTGA
                     CATtgagaatgaatttcATTTACAATTATTCATATGTgagaatgattggagtgagaca
                     a"
                     /listShort="yetG, S247"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(709705)
                     /Source="Nicolas_upshifts"
                     /id="U538"
                     /multdbtbs="-"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp="0.604395604395604"
                     /psig="0.999000999001"
                     /xcortree=2117
                     /SigmaFactorBS="tgttgcgcacggcggttcgattccgccctgcgctttcTTTGA
                     CATtgagaatgaatttcATTTACAATTATTCATATGTgagaatgattggagtgagaca
                     a"
                     /listShort="yetG, S247"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(709721..709728)
                     /Source="Nicolas_upshift_promotors"
                     /id="U538"
                     /multdbtbs="-"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp="0.604395604395604"
                     /psig="0.999000999001"
                     /xcortree=2117
                     /SigmaFactorBS="tgttgcgcacggcggttcgattccgccctgcgctttcTTTGA
                     CATtgagaatgaatttcATTTACAATTATTCATATGTgagaatgattggagtgagaca
                     a"
                     /listShort="yetG, S247"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             complement(709768..710130)
                     /gene="yetH"
                     /locus_tag="BSU_07160"
                     /old_locus_tag="BSU07160"
                     /function="16.11: Scavenge (Catabolism)"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative lyase/dioxygenase"
                     /protein_id="NP_388597.1"
                     /db_xref="EnsemblGenomes-Gn:BSU07160"
                     /db_xref="EnsemblGenomes-Tr:CAB12535"
                     /db_xref="InterPro:IPR004360"
                     /db_xref="InterPro:IPR029068"
                     /db_xref="SubtiList:BG12864"
                     /db_xref="UniProtKB/Swiss-Prot:O31535"
                     /translation="MIKQIGTVAVYVEDQQKAKQFWTEKVGFDIAADHPMGPEASWLE
                     VAPKGAETRLVIYPKAMMKGSEQMKASIVFECEDIFGTYEKMKTNGVEFLGEPNQMEW
                     GTFVQFKDEDGNVFLLKE*"
                     /label="yetH CDS"
     gene            complement(709768..710130)
                     /gene="yetH"
                     /locus_tag="BSU_07160"
                     /old_locus_tag="BSU07160"
                     /label="yetH gene"
     promotor_-10    complement(710153..710172)
                     /Source="Nicolas_upshift_promotors"
                     /id="U539"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.431568431568432"
                     /psig="0.993006993006993"
                     /xcortree=2376
                     /SigmaFactorBS="ttttaataatcagccggtttcccggctgatttttttATGTTA
                     CttcggccgtaaaCAGGTTATAGTATTATTATCttttcaacttggaggtttccctatg
                     a"
                     /listShort="yetH, yetG"
                     /listLong="S247"
                     /label="promotor_-10"
     upshifts        complement(710167)
                     /Source="Nicolas_upshifts"
                     /id="U539"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.431568431568432"
                     /psig="0.993006993006993"
                     /xcortree=2376
                     /SigmaFactorBS="ttttaataatcagccggtttcccggctgatttttttATGTTA
                     CttcggccgtaaaCAGGTTATAGTATTATTATCttttcaacttggaggtttccctatg
                     a"
                     /listShort="yetH, yetG"
                     /listLong="S247"
                     /label="upshifts"
     promotor_-35    complement(710185..710191)
                     /Source="Nicolas_upshift_promotors"
                     /id="U539"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.431568431568432"
                     /psig="0.993006993006993"
                     /xcortree=2376
                     /SigmaFactorBS="ttttaataatcagccggtttcccggctgatttttttATGTTA
                     CttcggccgtaaaCAGGTTATAGTATTATTATCttttcaacttggaggtttccctatg
                     a"
                     /listShort="yetH, yetG"
                     /listLong="S247"
                     /label="promotor_-35"
     S_feature       complement(710201..710761)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_785976_786536_c"
                     /HighExp="S8, S6, S7, S5, BT, B36, G/S, B60, Pyr, nit"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="0.99999400000000005"
                     /TUshortSig="SigK"
                     /TUshortPSig=1
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S249"
     downshifts      complement(710233)
                     /Source="Nicolas_upshifts"
                     /id="D348"
                     /incds=0
                     /nref=38
                     /ntot=47
                     /MaxReadThrough="0.395850000000001"
                     /MaxDrop="8.2984"
                     /score="45.4672528"
                     /energy="-13.7"
                     /TU="NA"
                     /idTUdmin="U540"
                     /TUdmin=0
                     /isTUend="TRUE"
                     /label="downshifts"
     promotor_-10    complement(710744..710763)
                     /Source="Nicolas_upshift_promotors"
                     /id="U540"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp=1
                     /psig=1
                     /xcortree=1291
                     /SigmaFactorBS="ctctctgagagcattccagcttcatatccttaggcGAATGCA
                     CCAataagagtccgccCGCATAAACTGCAATGTACAgtttacaatgagaaaggacgtt
                     a"
                     /listShort="S249"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(710761)
                     /Source="Nicolas_upshifts"
                     /id="U540"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp=1
                     /psig=1
                     /xcortree=1291
                     /SigmaFactorBS="ctctctgagagcattccagcttcatatccttaggcGAATGCA
                     CCAataagagtccgccCGCATAAACTGCAATGTACAgtttacaatgagaaaggacgtt
                     a"
                     /listShort="S249"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(710777..710786)
                     /Source="Nicolas_upshift_promotors"
                     /id="U540"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp=1
                     /psig=1
                     /xcortree=1291
                     /SigmaFactorBS="ctctctgagagcattccagcttcatatccttaggcGAATGCA
                     CCAataagagtccgccCGCATAAACTGCAATGTACAgtttacaatgagaaaggacgtt
                     a"
                     /listShort="S249"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-35    710849..710856
                     /Source="Nicolas_upshift_promotors"
                     /id="U541"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.915084915084915"
                     /psig="0.999000999001"
                     /xcortree=2437
                     /SigmaFactorBS="ggaatgctctcagagagcagaatcatttgatttttctctagt
                     ctTATTCACAattccgatttatCATTTTATAATGAAAGTGCTtctattacgaaaaagg
                     a"
                     /listShort="yetI, yetI"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     upshifts        710865
                     /Source="Nicolas_upshifts"
                     /id="U541"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.915084915084915"
                     /psig="0.999000999001"
                     /xcortree=2437
                     /SigmaFactorBS="ggaatgctctcagagagcagaatcatttgatttttctctagt
                     ctTATTCACAattccgatttatCATTTTATAATGAAAGTGCTtctattacgaaaaagg
                     a"
                     /listShort="yetI, yetI"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-10    710869..710888
                     /Source="Nicolas_upshift_promotors"
                     /id="U541"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.915084915084915"
                     /psig="0.999000999001"
                     /xcortree=2437
                     /SigmaFactorBS="ggaatgctctcagagagcagaatcatttgatttttctctagt
                     ctTATTCACAattccgatttatCATTTTATAATGAAAGTGCTtctattacgaaaaagg
                     a"
                     /listShort="yetI, yetI"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     CDS             710914..711495
                     /gene="yetI"
                     /locus_tag="BSU_07170"
                     /old_locus_tag="BSU07170"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 5: Unknown function; PubMedId : 11157946;
                     Product type r: regulator"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="putative paralog of RsbR; N-terminal part of
                     YetI"
                     /db_xref="SubtiList:BG12865"
                     /translation="MNIDQLLYQYIIDNTADITEKWFSLRCQLKGELYSASHLSEETK
                     TLLTEQHTFTNITIASAFLEDQTDFQENMTKWAQNVAKNRVEQDVQVHEVVEAISNSR
                     ISFWDAVATFIKENQEIVTNEDADRWNRIVNQSFDKLIIEFSEQYQKFMLMRLTSQQE
                     LISELGCPVISIADGIGILPLIGSIDTKRHRSF*"
                     /label="yetI CDS"
     gene            710914..711495
                     /gene="yetI"
                     /locus_tag="BSU_07170"
                     /old_locus_tag="BSU07170"
                     /pseudo
                     /label="yetI gene"
     CDS             711489..711785
                     /gene="yetI"
                     /locus_tag="BSU_07180"
                     /old_locus_tag="BSU07180"
                     /function="16.3: Control"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 5: Unknown function; PubMedId : 11157946;
                     Product type r: regulator"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="putative paralog of RsbR; C-terminal part of
                     YetI"
                     /db_xref="GOA:O31537"
                     /db_xref="InterPro:IPR002645"
                     /db_xref="InterPro:IPR036513"
                     /db_xref="PSEUDO:CAB12537.2"
                     /db_xref="SubtiList:BG12873"
                     /db_xref="UniProtKB/Swiss-Prot:O31537"
                     /translation="MLETVPVRCVERKITSLVVDLSGVPIVDTMVAQQLYNLSKTLFL
                     LGVKAVFSGIRPDVAQTSIQLGLDFSEYETYGTLKQALENMGVRCIVEELEENK*"
                     /label="yetI CDS"
     gene            711489..711785
                     /gene="yetI"
                     /locus_tag="BSU_07180"
                     /old_locus_tag="BSU07180"
                     /pseudo
                     /label="yetI gene"
     downshifts      711777
                     /Source="Nicolas_upshifts"
                     /id="D349"
                     /incds=0
                     /nref=114
                     /ntot=215
                     /MaxReadThrough="1.06939"
                     /MaxDrop="4.8053"
                     /score="16.356572"
                     /energy="-21.2"
                     /TU="NA"
                     /idTUdmin="U541"
                     /TUdmin="-8"
                     /isTUend="TRUE"
                     /label="downshifts"
     promotor_-35    711856..711863
                     /Source="Nicolas_upshift_promotors"
                     /id="U542"
                     /multdbtbs="-"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp="0.603396603396603"
                     /psig=1
                     /xcortree=1743
                     /SigmaFactorBS="atatgcctttttgatttgaacagaaatcaccATTGATTTatc
                     gaaaaaaacaTAATATTATAATTCTTATAAgaatactgtgaattaaaacctattcaac
                     a"
                     /listShort="yezD, yetJ, yetK"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    711877..711896
                     /Source="Nicolas_upshift_promotors"
                     /id="U542"
                     /multdbtbs="-"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp="0.603396603396603"
                     /psig=1
                     /xcortree=1743
                     /SigmaFactorBS="atatgcctttttgatttgaacagaaatcaccATTGATTTatc
                     gaaaaaaacaTAATATTATAATTCTTATAAgaatactgtgaattaaaacctattcaac
                     a"
                     /listShort="yezD, yetJ, yetK"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        711885
                     /Source="Nicolas_upshifts"
                     /id="U542"
                     /multdbtbs="-"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp="0.603396603396603"
                     /psig=1
                     /xcortree=1743
                     /SigmaFactorBS="atatgcctttttgatttgaacagaaatcaccATTGATTTatc
                     gaaaaaaacaTAATATTATAATTCTTATAAgaatactgtgaattaaaacctattcaac
                     a"
                     /listShort="yezD, yetJ, yetK"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             711940..712107
                     /gene="yezD"
                     /locus_tag="BSU_07190"
                     /old_locus_tag="BSU07190"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved hypothetical protein"
                     /protein_id="NP_388600.1"
                     /db_xref="EnsemblGenomes-Gn:BSU07190"
                     /db_xref="EnsemblGenomes-Tr:CAB12538"
                     /db_xref="InterPro:IPR018743"
                     /db_xref="SubtiList:BG12875"
                     /db_xref="UniProtKB/Swiss-Prot:O31538"
                     /translation="MVSKSTIDPEVIEKIISSLETLDFGTVQITVHDSQITQIEKIEK
                     HRFSLKRKESK*"
                     /label="yezD CDS"
     gene            711940..712107
                     /gene="yezD"
                     /locus_tag="BSU_07190"
                     /old_locus_tag="BSU07190"
                     /label="yezD gene"
     promotor_-35    712149..712156
                     /Source="Nicolas_upshift_promotors"
                     /id="U543"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.985014985014985"
                     /psig=1
                     /xcortree=2401
                     /SigmaFactorBS="taaagggcgtttgttttcattaaattctccttaaaaCATATA
                     CAtatttcatccaatttTTATATAATAGACCTTTAAGatcattttttaggaggatttt
                     t"
                     /listShort="yetJ, yetK"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    712172..712191
                     /Source="Nicolas_upshift_promotors"
                     /id="U543"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.985014985014985"
                     /psig=1
                     /xcortree=2401
                     /SigmaFactorBS="taaagggcgtttgttttcattaaattctccttaaaaCATATA
                     CAtatttcatccaatttTTATATAATAGACCTTTAAGatcattttttaggaggatttt
                     t"
                     /listShort="yetJ, yetK"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        712173
                     /Source="Nicolas_upshifts"
                     /id="U543"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.985014985014985"
                     /psig=1
                     /xcortree=2401
                     /SigmaFactorBS="taaagggcgtttgttttcattaaattctccttaaaaCATATA
                     CAtatttcatccaatttTTATATAATAGACCTTTAAGatcattttttaggaggatttt
                     t"
                     /listShort="yetJ, yetK"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             712217..712861
                     /gene="calJ"
                     /locus_tag="BSU_07200"
                     /old_locus_tag="BSU07200"
                     /function="7.4: Cations and iron carrying compounds"
                     /experiment="publication(s) with functional evidences,
                     PMID:15849754, 16850406, 16086852, 24904158"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 15849754, 16850406,
                     16086852, 24904158; Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="pH-sensitive calcium-leak permease (di-aspartyl
                     pH sensor)"
                     /protein_id="NP_388601.1"
                     /db_xref="EnsemblGenomes-Gn:BSU07200"
                     /db_xref="EnsemblGenomes-Tr:CAB12539"
                     /db_xref="GOA:O31539"
                     /db_xref="InterPro:IPR006214"
                     /db_xref="PDB:4PGR"
                     /db_xref="PDB:4PGS"
                     /db_xref="PDB:4PGU"
                     /db_xref="PDB:4PGV"
                     /db_xref="PDB:4PGW"
                     /db_xref="PDB:4TKQ"
                     /db_xref="SubtiList:BG12866"
                     /db_xref="UniProtKB/Swiss-Prot:O31539"
                     /translation="MQATVHESKQSIMQRILTVFVFTLLIATVGLFIGQFVPVALMLP
                     LSILEVAMIILAFWMRRRKAVGYAFVYTFAFVSGITLFPIVSHYASIAGAYVVLEAFG
                     STFVIFAVLGTIGAKMKKDLSFLWSFLLVAVLALAVVGIFNIFSPLNSAAMMAYSVIG
                     TIVFSLYILYDLNQIKHRHITEDLIPVMALSLYLDFINLFINLLRFFGILSSDD*"
                     /label="calJ CDS"
     gene            712217..712861
                     /gene="calJ"
                     /locus_tag="BSU_07200"
                     /old_locus_tag="BSU07200"
                     /label="calJ gene"
     downshifts      712797
                     /Source="Nicolas_upshifts"
                     /id="D350"
                     /incds=1
                     /nref=1
                     /ntot=11
                     /MaxReadThrough="6.69003"
                     /MaxDrop="2.5446"
                     /score="-1.46791202"
                     /energy="-10.7"
                     /TU="U542,U543"
                     /idTUdmin="U541"
                     /TUdmin=1012
                     /isTUend="FALSE"
                     /label="downshifts"
     downshifts      712841
                     /Source="Nicolas_upshifts"
                     /id="D351"
                     /incds=0
                     /nref=7
                     /ntot=127
                     /MaxReadThrough="5.33515"
                     /MaxDrop="3.71552"
                     /score="-1.46791202"
                     /energy="-10.7"
                     /TU="U542,U543"
                     /idTUdmin="U542"
                     /TUdmin="-990"
                     /isTUend="FALSE"
                     /label="downshifts"
     CDS             712861..713853
                     /gene="yetK"
                     /locus_tag="BSU_07210"
                     /old_locus_tag="BSU07210"
                     /function="16.1: Circulate"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 15849754, 16850406;
                     Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="putative efflux transporter"
                     /protein_id="NP_388602.1"
                     /db_xref="EnsemblGenomes-Gn:BSU07210"
                     /db_xref="EnsemblGenomes-Tr:CAB12540"
                     /db_xref="GOA:O31540"
                     /db_xref="InterPro:IPR000620"
                     /db_xref="SubtiList:BG12867"
                     /db_xref="UniProtKB/Swiss-Prot:O31540"
                     /translation="MKKRLSLDRRFLPYIKKAGGVLVKKQMGAYVSLAAAMAIVGSSV
                     VVGKLMVERIPVFLSSGLRFLIASVVLLMLLFCIEKGFPALTKKDVFVLLVQSFTGVF
                     LFSICLLYGVQYTTGTESGILTSTTPMLIGILSFFLLREKIEKKTLIGILLAVCGVMA
                     INLFGAGSQDGTPHALFGNMLIIAAVIGEALFTLMAKLLSPHISALAISTFVSLFGFL
                     FFLPFALFEASSFDYSVPTVLDWSYVLYYALFVTVLAFYLWYSGVTKVPAGVSGIFTS
                     VLPVSAVILSGVILKEPFEFVHFIGIACVIGGIFVTVIKKKQPDAYPAAEEKTL*"
                     /label="yetK CDS"
     gene            712861..713853
                     /gene="yetK"
                     /locus_tag="BSU_07210"
                     /old_locus_tag="BSU07210"
                     /label="yetK gene"
     downshifts      713787
                     /Source="Nicolas_upshifts"
                     /id="D352"
                     /incds=1
                     /nref=1
                     /ntot=18
                     /MaxReadThrough="4.14475"
                     /MaxDrop="2.73453"
                     /score="21.8095329"
                     /energy="-10.7"
                     /TU="U542,U543"
                     /idTUdmin="U542"
                     /TUdmin="-44"
                     /isTUend="FALSE"
                     /label="downshifts"
     downshifts      713831
                     /Source="Nicolas_upshifts"
                     /id="D353"
                     /incds=0
                     /nref=94
                     /ntot=214
                     /MaxReadThrough="0.120229999999999"
                     /MaxDrop="4.45909"
                     /score="21.8095329"
                     /energy="-10.7"
                     /TU="NA"
                     /idTUdmin="U542"
                     /TUdmin=0
                     /isTUend="TRUE"
                     /label="downshifts"
     CDS             complement(713877..714380)
                     /gene="flvL"
                     /locus_tag="BSU_07220"
                     /old_locus_tag="BSU07220"
                     /function="16.3: Control"
                     /experiment="publication(s) with functional evidences,
                     PMID:19329649, 25209494"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 19329649, 25209494;
                     Product type r: regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator (FlvL-flavonoids)"
                     /protein_id="NP_388603.1"
                     /db_xref="EnsemblGenomes-Gn:BSU07220"
                     /db_xref="EnsemblGenomes-Tr:CAB12541"
                     /db_xref="GOA:O31541"
                     /db_xref="InterPro:IPR000835"
                     /db_xref="InterPro:IPR023187"
                     /db_xref="InterPro:IPR036388"
                     /db_xref="InterPro:IPR036390"
                     /db_xref="SubtiList:BG12868"
                     /db_xref="UniProtKB/Swiss-Prot:O31541"
                     /translation="MELKHLPKYKHITEHAETYANIDAGSLELFLSLFDISKKMNHVM
                     EHYFAGRGLSEGKFKILMLLFDAKDHRLSPTELAKRSNVTKATITGLLDGLARDGFVS
                     RRHHTEDKRKISIELTTEGKARLEQFLPGHFSKISAVMENYSDEEKDMFVKMLGDLFE
                     RLSVFKD*"
                     /label="flvL CDS"
     gene            complement(713877..714380)
                     /gene="flvL"
                     /locus_tag="BSU_07220"
                     /old_locus_tag="BSU07220"
                     /label="flvL gene"
     promotor_-10    complement(714405..714424)
                     /Source="Nicolas_upshift_promotors"
                     /id="U544"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.739260739260739"
                     /psig="0.952047952047952"
                     /xcortree=3006
                     /SigmaFactorBS="aagaaaagctgtcaatcatctccaagccAAGTTGCGttatgg
                     ttttcccTCCTTTATAATCGTGTCACAacgaatgtacgggagctaattgcgatggaat
                     t"
                     /listShort="yetL"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(714413)
                     /Source="Nicolas_upshifts"
                     /id="U544"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.739260739260739"
                     /psig="0.952047952047952"
                     /xcortree=3006
                     /SigmaFactorBS="aagaaaagctgtcaatcatctccaagccAAGTTGCGttatgg
                     ttttcccTCCTTTATAATCGTGTCACAacgaatgtacgggagctaattgcgatggaat
                     t"
                     /listShort="yetL"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(714438..714445)
                     /Source="Nicolas_upshift_promotors"
                     /id="U544"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.739260739260739"
                     /psig="0.952047952047952"
                     /xcortree=3006
                     /SigmaFactorBS="aagaaaagctgtcaatcatctccaagccAAGTTGCGttatgg
                     ttttcccTCCTTTATAATCGTGTCACAacgaatgtacgggagctaattgcgatggaat
                     t"
                     /listShort="yetL"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             714543..715652
                     /gene="flvM"
                     /locus_tag="BSU_07230"
                     /old_locus_tag="BSU07230"
                     /EC_number="1.14.13.-"
                     /function="16.11: Scavenge (Catabolism)"
                     /function="16.8: Protect"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 25209494; Product type
                     e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative flavin-dependent
                     hydroxylase/monooxygenase acting on salicylate
                     derivatives"
                     /protein_id="NP_388604.1"
                     /db_xref="EnsemblGenomes-Gn:BSU07230"
                     /db_xref="EnsemblGenomes-Tr:CAB12542"
                     /db_xref="GOA:O06489"
                     /db_xref="InterPro:IPR002938"
                     /db_xref="InterPro:IPR036188"
                     /db_xref="SubtiList:BG12869"
                     /db_xref="UniProtKB/Swiss-Prot:O06489"
                     /translation="MKHMLIAGGGIGGLSAAISLRKAGFSVTLCEAASENRKTGAGIL
                     QPQNALAVLKELGVFEDCCKHGFQTEWFKTFDEQGNLLFQVSESFLDDSLPGRNNILR
                     KTLNDILMKHAEAVGVDIKWGKKVVAYEETAESVTALCEDGEKMQADILAGFDGIHSV
                     VRDKMLQKETEKEHLGMGAWRFYIELPDYTFEDATFMYRSGDTQIGVVPLAQHAGYVF
                     VLQPCTSDYWDEEDTRFDRVKEILSGFRGLDFVTKHMSKQHPVIFNKLEQVAVQEPWH
                     KGRVIIGGDAAHAGAPTLAQGAAMAIEDAIVLAEELQNHADHETALQAYYKRRAPRAL
                     KVQNLSSEIVRRRLKGEPGAEELIGECYAVLREGY*"
                     /label="flvM CDS"
     gene            714543..715652
                     /gene="flvM"
                     /locus_tag="BSU_07230"
                     /old_locus_tag="BSU07230"
                     /label="flvM gene"
     downshifts      715635
                     /Source="Nicolas_upshifts"
                     /id="D354"
                     /incds=0
                     /nref=7
                     /ntot=67
                     /MaxReadThrough="0.0953400000000002"
                     /MaxDrop="5.1482"
                     /score="13.261567"
                     /energy="-12.6"
                     /TU="NA"
                     /idTUdmin="U542"
                     /TUdmin=1804
                     /isTUend="FALSE"
                     /label="downshifts"
     CDS             complement(715687..716757)
                     /gene="yetN"
                     /locus_tag="BSU_07240"
                     /old_locus_tag="BSU07240"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms; PubMedId: 22333191"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved hypothetical protein"
                     /protein_id="NP_388605.1"
                     /db_xref="EnsemblGenomes-Gn:BSU07240"
                     /db_xref="EnsemblGenomes-Tr:CAB12543"
                     /db_xref="InterPro:IPR025006"
                     /db_xref="InterPro:IPR025012"
                     /db_xref="SubtiList:BG12870"
                     /db_xref="UniProtKB/Swiss-Prot:O06490"
                     /translation="MDFEIRFLSFYVIQVEGKDEQANKQFKHFQTLDTGEFEESELKD
                     FLDGELKKIVKRKADRHPQSEQVPTKIGHFIVEPGHELDSNPNYNMFNRARLAETKED
                     FNELSEQFVRTYLDTSAVRGGVFLVASAVPRKYFDESFVFIMKCDFEPKVARISDASS
                     LIKKVEMAITTKNMKSIQYPYMPEEGMVEEGELKIHQASHARYFEDFLKFVEYGESMP
                     EIMKNQVMNMVQEHVYETFEDNSEELKQFEHDIEIWEASEKREIQERLDTHQVIEASA
                     QIIEHTPEAQLKMKVGETEIKGLLADFGDSIHLAKVNGRYVALIEAETISFEKGSSPV
                     EFYKPEGLHEVIERIRNKTEQD*"
                     /label="yetN CDS"
     gene            complement(715687..716757)
                     /gene="yetN"
                     /locus_tag="BSU_07240"
                     /old_locus_tag="BSU07240"
                     /label="yetN gene"
     downshifts      complement(715711)
                     /Source="Nicolas_upshifts"
                     /id="D355"
                     /incds=0
                     /nref=45
                     /ntot=180
                     /MaxReadThrough="0.83729"
                     /MaxDrop="4.28938"
                     /score="0.323038441"
                     /energy="-11.6"
                     /TU="NA"
                     /idTUdmin="U545"
                     /TUdmin=0
                     /isTUend="TRUE"
                     /label="downshifts"
     promotor_-10    complement(716788..716807)
                     /Source="Nicolas_upshift_promotors"
                     /id="U545"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.818181818181818"
                     /psig="0.987012987012987"
                     /xcortree=1835
                     /SigmaFactorBS="atttgactacatttccctttcatggtcatgattattccgttc
                     tccCAATTGACgcatgatcgctgttTTTTCTATACTTGAGAAGCTgtacaatacgcga
                     a"
                     /listShort="yetN"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(716814)
                     /Source="Nicolas_upshifts"
                     /id="U545"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.818181818181818"
                     /psig="0.987012987012987"
                     /xcortree=1835
                     /SigmaFactorBS="atttgactacatttccctttcatggtcatgattattccgttc
                     tccCAATTGACgcatgatcgctgttTTTTCTATACTTGAGAAGCTgtacaatacgcga
                     a"
                     /listShort="yetN"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(716822..716829)
                     /Source="Nicolas_upshift_promotors"
                     /id="U545"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.818181818181818"
                     /psig="0.987012987012987"
                     /xcortree=1835
                     /SigmaFactorBS="atttgactacatttccctttcatggtcatgattattccgttc
                     tccCAATTGACgcatgatcgctgttTTTTCTATACTTGAGAAGCTgtacaatacgcga
                     a"
                     /listShort="yetN"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-35    716837..716843
                     /Source="Nicolas_upshift_promotors"
                     /id="U546"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp="0.976023976023976"
                     /psig="0.976023976023976"
                     /xcortree=728
                     /SigmaFactorBS="aaacagcgatcatgcgtcaattgggagaacGGAATAAtcatg
                     accatgaaaGGGAAATGTAGTCAAATAGaaggcatttcatacggaaaggaatggttcg
                     a"
                     /listShort="yetO"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    716858..716876
                     /Source="Nicolas_upshift_promotors"
                     /id="U546"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp="0.976023976023976"
                     /psig="0.976023976023976"
                     /xcortree=728
                     /SigmaFactorBS="aaacagcgatcatgcgtcaattgggagaacGGAATAAtcatg
                     accatgaaaGGGAAATGTAGTCAAATAGaaggcatttcatacggaaaggaatggttcg
                     a"
                     /listShort="yetO"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        716867
                     /Source="Nicolas_upshifts"
                     /id="U546"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp="0.976023976023976"
                     /psig="0.976023976023976"
                     /xcortree=728
                     /SigmaFactorBS="aaacagcgatcatgcgtcaattgggagaacGGAATAAtcatg
                     accatgaaaGGGAAATGTAGTCAAATAGaaggcatttcatacggaaaggaatggttcg
                     a"
                     /listShort="yetO"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             716907..720092
                     /gene="cypD"
                     /locus_tag="BSU_07250"
                     /old_locus_tag="BSU07250"
                     /EC_number="1.6.2.4"
                     /EC_number="1.14.14.1"
                     /function="16.11: Scavenge (Catabolism)"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 1c: Function from experimental evidences
                     in the studied genus; PubMedId: 11574077, 2544578,
                     21048857, 26452461; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional P-450/NADPH-P450 reductase 1"
                     /protein_id="NP_388606.1"
                     /db_xref="EnsemblGenomes-Gn:BSU07250"
                     /db_xref="EnsemblGenomes-Tr:CAB12544"
                     /db_xref="GOA:O08394"
                     /db_xref="InterPro:IPR001094"
                     /db_xref="InterPro:IPR001128"
                     /db_xref="InterPro:IPR001433"
                     /db_xref="InterPro:IPR001709"
                     /db_xref="InterPro:IPR003097"
                     /db_xref="InterPro:IPR008254"
                     /db_xref="InterPro:IPR017927"
                     /db_xref="InterPro:IPR017938"
                     /db_xref="InterPro:IPR017972"
                     /db_xref="InterPro:IPR023206"
                     /db_xref="InterPro:IPR029039"
                     /db_xref="InterPro:IPR036396"
                     /db_xref="SubtiList:BG12871"
                     /db_xref="UniProtKB/Swiss-Prot:O08394"
                     /translation="MKETSPIPQPKTFGPLGNLPLIDKDKPTLSLIKLAEEQGPIFQI
                     HTPAGTTIVVSGHELVKEVCDEERFDKSIEGALEKVRAFSGDGLFTSWTHEPNWRKAH
                     NILMPTFSQRAMKDYHEKMVDIAVQLIQKWARLNPNEAVDVPGDMTRLTLDTIGLCGF
                     NYRFNSYYRETPHPFINSMVRALDEAMHQMQRLDVQDKLMVRTKRQFRYDIQTMFSLV
                     DSIIAERRANGDQDEKDLLARMLNVEDPETGEKLDDENIRFQIITFLIAGHETTSGLL
                     SFATYFLLKHPDKLKKAYEEVDRVLTDAAPTYKQVLELTYIRMILNESLRLWPTAPAF
                     SLYPKEDTVIGGKFPITTNDRISVLIPQLHRDRDAWGKDAEEFRPERFEHQDQVPHHA
                     YKPFGNGQRACIGMQFALHEATLVLGMILKYFTLIDHENYELDIKQTLTLKPGDFHIS
                     VQSRHQEAIHADVQAAEKAAPDEQKEKTEAKGASVIGLNNRPLLVLYGSDTGTAEGVA
                     RELADTASLHGVRTKTAPLNDRIGKLPKEGAVVIVTSSYNGKPPSNAGQFVQWLQEIK
                     PGELEGVHYAVFGCGDHNWASTYQYVPRFIDEQLAEKGATRFSARGEGDVSGDFEGQL
                     DEWKKSMWADAIKAFGLELNENADKERSTLSLQFVRGLGESPLARSYEASHASIAENR
                     ELQSADSDRSTRHIEIALPPDVEYQEGDHLGVLPKNSQTNVSRILHRFGLKGTDQVTL
                     SASGRSAGHLPLGRPVSLHDLLSYSVEVQEAATRAQIRELASFTVCPPHRRELEELSA
                     EGVYQEQILKKRISMLDLLEKYEACDMPFERFLELLRPLKPRYYSISSSPRVNPRQAS
                     ITVGVVRGPAWSGRGEYRGVASNDLAERQAGDDVVMFIRTPESRFQLPKDPETPIIMV
                     GPGTGVAPFRGFLQARDVLKREGKTLGEAHLYFGCRNDRDFIYRDELERFEKDGIVTV
                     HTAFSRKEGMPKTYVQHLMADQADTLISILDRGGRLYVCGDGSKMAPDVEAALQKAYQ
                     AVHGTGEQEAQNWLRHLQDTGMYAKDVWAGI*"
                     /label="cypD CDS"
     gene            716907..720092
                     /gene="cypD"
                     /locus_tag="BSU_07250"
                     /old_locus_tag="BSU07250"
                     /label="cypD gene"
     downshifts      720079
                     /Source="Nicolas_upshifts"
                     /id="D356"
                     /incds=0
                     /nref=1
                     /ntot=9
                     /MaxReadThrough="2.31156"
                     /MaxDrop="2.91666"
                     /score="9.17315362"
                     /energy="-9.8"
                     /TU="NA"
                     /idTUdmin="U546"
                     /TUdmin=44
                     /isTUend="FALSE"
                     /label="downshifts"
     promotor_-35    720142..720147
                     /Source="Nicolas_upshift_promotors"
                     /id="U547"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.841158841158841"
                     /psig="0.841158841158841"
                     /xcortree=1029
                     /SigmaFactorBS="agtcctttcgaaaaaatgGTGATCgcgctaaacattgatGCA
                     TACAATAACTTCAGTCcgccggaagggcgggctgtctgcaaaacctatttttcgtttt
                     t"
                     /listShort="S250, ltaSA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    720163..720181
                     /Source="Nicolas_upshift_promotors"
                     /id="U547"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.841158841158841"
                     /psig="0.841158841158841"
                     /xcortree=1029
                     /SigmaFactorBS="agtcctttcgaaaaaatgGTGATCgcgctaaacattgatGCA
                     TACAATAACTTCAGTCcgccggaagggcgggctgtctgcaaaacctatttttcgtttt
                     t"
                     /listShort="S250, ltaSA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        720184
                     /Source="Nicolas_upshifts"
                     /id="U547"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.841158841158841"
                     /psig="0.841158841158841"
                     /xcortree=1029
                     /SigmaFactorBS="agtcctttcgaaaaaatgGTGATCgcgctaaacattgatGCA
                     TACAATAACTTCAGTCcgccggaagggcgggctgtctgcaaaacctatttttcgtttt
                     t"
                     /listShort="S250, ltaSA"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    720212..720215
                     /Source="Nicolas_upshift_promotors"
                     /id="U548"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.803196803196803"
                     /psig=1
                     /xcortree=2603
                     /SigmaFactorBS="acttcagtccgccggaagggcgggctgtctgcaaaacctATT
                     TttcgtttttgctagttTATGTTATTCTTATACTCGGtatctatttcttttttcaaag
                     g"
                     /listShort="S250, ltaSA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    720232..720251
                     /Source="Nicolas_upshift_promotors"
                     /id="U548"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.803196803196803"
                     /psig=1
                     /xcortree=2603
                     /SigmaFactorBS="acttcagtccgccggaagggcgggctgtctgcaaaacctATT
                     TttcgtttttgctagttTATGTTATTCTTATACTCGGtatctatttcttttttcaaag
                     g"
                     /listShort="S250, ltaSA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     S_feature       720233..720538
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_796008_796313"
                     /HighExp="H2O2, Paraq, Oxctl, Cold, Heat, LBGexp, G180,
                     G150, HPh, LBGstat"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA, SigEF"
                     /TUshortPSig="1, 0.841"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S250"
     upshifts        720233
                     /Source="Nicolas_upshifts"
                     /id="U548"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.803196803196803"
                     /psig=1
                     /xcortree=2603
                     /SigmaFactorBS="acttcagtccgccggaagggcgggctgtctgcaaaacctATT
                     TttcgtttttgctagttTATGTTATTCTTATACTCGGtatctatttcttttttcaaag
                     g"
                     /listShort="S250, ltaSA"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             720539..722458
                     /gene="ltaSA"
                     /locus_tag="BSU_07260"
                     /old_locus_tag="BSU07260"
                     /function="16.1: Circulate"
                     /function="16.13: Shape"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 2a: Function from experimental evidences
                     in other organisms; PubMedId: 11544192, 15187182,
                     17434969, 17483484, 21255105, 27002131; Product type e :
                     enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="exported glycerol phosphate lipoteichoic acid
                     synthetase and anion-binding protein"
                     /protein_id="NP_388607.2"
                     /db_xref="EnsemblGenomes-Gn:BSU07260"
                     /db_xref="EnsemblGenomes-Tr:CAB12545"
                     /db_xref="GOA:Q797B3"
                     /db_xref="InterPro:IPR000917"
                     /db_xref="InterPro:IPR012160"
                     /db_xref="InterPro:IPR017849"
                     /db_xref="InterPro:IPR017850"
                     /db_xref="SubtiList:BG12980"
                     /db_xref="UniProtKB/Swiss-Prot:Q797B3"
                     /translation="MKKLFSYKLSFFVLAVILFWAKTYLSYKTEFNLGVKGTTQEILL
                     IFNPFSSAVFFLGLALLAKGRKSAIIMLIIDFLMTFVLYANILFYRFFDDFLTFPNIK
                     QSGNVGNMGDGIFSIMAGHDIFYFLDIIILIAVLIWRPELKEYKMKKRFASLVILSGI
                     ALFFINLHYAEKDRPQLLTRTFDRNYIVKYLGLYNYTIYDGVQTAQTETQRAYASSDD
                     LTSVENYTTSHYAKPNAEYFGSAKGKNIIKIHLESFQSFLIDYKLNGEEVTPFLNKLA
                     HGGEDVTYFDNFFHQTGQGKTSDAELTMDNSIFGLPEGSAFVTKGENTYQSLPAILDQ
                     KEGYTSAVLHGDYKSFWNRDQIYKHIGYDKFFDASTYDMSDENVINMGLKDKPFFTES
                     IPKLESLKQPFYAHLITLTNHYPFNLDEKDASLKKATTGDNTVDSYFQTARYLDEALE
                     QFFKELKEAGLYDNSVIMIYGDHNGISENHNRAMKEILGKEITDYQNAQNQRVPLMIR
                     VPGKKGGVNHTYGGEIDVMPTLLHLEGIDSQKYINFGTDLFSKDHDDTVAFRNGDFVT
                     PKYTSVDNIIYDTKTGEKLKANEETKNLKTRVNQQLSLSDSVLYKDLLRFHKLNDFKA
                     VDPSDYHYGKEKEIK*"
                     /label="ltaSA CDS"
     gene            720539..722458
                     /gene="ltaSA"
                     /locus_tag="BSU_07260"
                     /old_locus_tag="BSU07260"
                     /label="ltaSA gene"
     downshifts      722457
                     /Source="Nicolas_upshifts"
                     /id="D357"
                     /incds=0
                     /nref=103
                     /ntot=261
                     /MaxReadThrough="1.69168"
                     /MaxDrop="7.8227"
                     /score="37.7648461"
                     /energy="-24"
                     /TU="NA"
                     /idTUdmin="U547"
                     /TUdmin=2
                     /isTUend="TRUE"
                     /label="downshifts"
     promotor_-35    722546..722555
                     /Source="Nicolas_upshift_promotors"
                     /id="U549"
                     /multdbtbs="SigK"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp=1
                     /psig=1
                     /xcortree=1421
                     /SigmaFactorBS="tttttttggttatacaaccaacttgaaaaaatagattccatT
                     TGGTCACCAaggctggctttctCTCATATCATTACAGTAGATtttgaaaccggattga
                     a"
                     /listShort="S251, yfnH, yfnG, yfnF, yfnE, yfnD"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     S_feature       722565..722693
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_798340_798468"
                     /HighExp="BT, B36, S8, S7, G/S, Pyr, B60, S6, Glucon, MG
                     5"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigK"
                     /TUshortPSig=1
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S251"
     upshifts        722565
                     /Source="Nicolas_upshifts"
                     /id="U549"
                     /multdbtbs="SigK"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp=1
                     /psig=1
                     /xcortree=1421
                     /SigmaFactorBS="tttttttggttatacaaccaacttgaaaaaatagattccatT
                     TGGTCACCAaggctggctttctCTCATATCATTACAGTAGATtttgaaaccggattga
                     a"
                     /listShort="S251, yfnH, yfnG, yfnF, yfnE, yfnD"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-10    722569..722588
                     /Source="Nicolas_upshift_promotors"
                     /id="U549"
                     /multdbtbs="SigK"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp=1
                     /psig=1
                     /xcortree=1421
                     /SigmaFactorBS="tttttttggttatacaaccaacttgaaaaaatagattccatT
                     TGGTCACCAaggctggctttctCTCATATCATTACAGTAGATtttgaaaccggattga
                     a"
                     /listShort="S251, yfnH, yfnG, yfnF, yfnE, yfnD"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     downshifts      complement(722619)
                     /Source="Nicolas_upshifts"
                     /id="D358"
                     /incds=0
                     /nref=2
                     /ntot=6
                     /MaxReadThrough="1.80969"
                     /MaxDrop="4.63324"
                     /score="20.6569889"
                     /energy="-23.4"
                     /TU="NA"
                     /idTUdmin="U552"
                     /TUdmin=4928
                     /isTUend="FALSE"
                     /label="downshifts"
     CDS             722694..723458
                     /gene="spmH"
                     /locus_tag="BSU_07270"
                     /old_locus_tag="BSU07270"
                     /EC_number="2.7.7.33"
                     /function="16.8: Protect"
                     /experiment="publication(s) with functional evidences,
                     PMID:15634670, 16357223, 26577401"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 15634670, 16357223,
                     26577401; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="glucose-1-phosphate cytidylyltransferase
                     (sporulation)"
                     /protein_id="NP_388608.1"
                     /db_xref="EnsemblGenomes-Gn:BSU07270"
                     /db_xref="EnsemblGenomes-Tr:CAB12546"
                     /db_xref="GOA:O06486"
                     /db_xref="InterPro:IPR005835"
                     /db_xref="InterPro:IPR013446"
                     /db_xref="InterPro:IPR029044"
                     /db_xref="SubtiList:BG12979"
                     /db_xref="UniProtKB/Swiss-Prot:O06486"
                     /translation="MKAVILCGGKGTRMSEVTNDIPKPLAMIGGKPILWHIMKIYQYY
                     GVNEFILLLGYKGEKIKEYFLDYEWKHNSLTLDSSTGEVQMLGQPETWKITFLETGVD
                     TLTAGRILQAKDYIGDETFLLTYGDGLANINLFHLISYHQTKGAAATVTGIDKVSQFG
                     TLTVEDGMAKTFSEKTSSDGIINGGFFVLSPKVFDYLPKDGNTMFEDEPLKNLAKDGE
                     LAVYRHYGFWTAIDTYKNLLEVNKMWNQGQQVWKVW*"
                     /label="spmH CDS"
     gene            722694..723458
                     /gene="spmH"
                     /locus_tag="BSU_07270"
                     /old_locus_tag="BSU07270"
                     /label="spmH gene"
     CDS             723465..724433
                     /gene="spmG"
                     /locus_tag="BSU_07280"
                     /old_locus_tag="BSU07280"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative CDP-sugar-dehydratase/epimerase"
                     /protein_id="NP_388609.2"
                     /db_xref="EnsemblGenomes-Gn:BSU07280"
                     /db_xref="EnsemblGenomes-Tr:CAB12547"
                     /db_xref="GOA:O06485"
                     /db_xref="InterPro:IPR016040"
                     /db_xref="InterPro:IPR036291"
                     /db_xref="SubtiList:BG12978"
                     /db_xref="UniProtKB/Swiss-Prot:O06485"
                     /translation="MSFWKNKNVFVTGCTGLLGSYLVKELIEQGANVTGLVRDHVPQS
                     NLYQGEHIKKMNIVRGSLEDLAVIERALGEYEIDTVFHLAAQAIVGVANRNPISTFEA
                     NILGTWNILEACRKHPLIKRVIVASSDKAYGDQENLPYDENMPLQGKHPYDVSKSCAD
                     LISHTYFHTYGLPVCITRCGNLYGGGDLNFNRIIPQTIQLVLNGEAPEIRSDGTFVRD
                     YFYIEDAVQAYLLLAEKMEENNLAGEAFNFSNEIQLTVLELVEKILKKMNSNLKPKVL
                     NQGSNEIKHQYLSAEKARKLLNWTPAYTIDEGLEKTIEWYTEFFKK*"
                     /label="spmG CDS"
     gene            723465..724433
                     /gene="spmG"
                     /locus_tag="BSU_07280"
                     /old_locus_tag="BSU07280"
                     /label="spmG gene"
     CDS             724457..725368
                     /gene="yfnF"
                     /locus_tag="BSU_07290"
                     /old_locus_tag="BSU07290"
                     /EC_number="2.4.1.-"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative glycosyltransferase"
                     /protein_id="NP_388610.1"
                     /db_xref="EnsemblGenomes-Gn:BSU07290"
                     /db_xref="EnsemblGenomes-Tr:CAB12548"
                     /db_xref="InterPro:IPR005069"
                     /db_xref="InterPro:IPR029044"
                     /db_xref="SubtiList:BG12977"
                     /db_xref="UniProtKB/Swiss-Prot:O06484"
                     /translation="MTSAYCTVLSKGRLYQAVALFKSLEQVDQDSPIFILCMDEDTHR
                     VLQKLKMKQLNLVPVAALENELLLKLKETRDQSEYCWTMKPIFLQAVLNSNPELERVT
                     YIDGDLFFYADPSPIFENQPDCSVLLSRGDIVIPSFEKEQIDMLQRLLGRYNSGFISF
                     KHDDAGTDCLEWWKERCLEECKNAPGEGKFGDQGYLDYMSELFPNVCDITTPGVNIGH
                     WNYGQHTFSWKDGRIVLEDGSPLIFYHFSGYRIVSINEIKQIHETTRTDLPFVHELYQ
                     ETLPHIIQHMQTLDPEFNGFASKDDNK*"
                     /label="yfnF CDS"
     gene            724457..725368
                     /gene="yfnF"
                     /locus_tag="BSU_07290"
                     /old_locus_tag="BSU07290"
                     /label="yfnF gene"
     promotor_-35    725246..725255
                     /Source="Nicolas_upshift_promotors"
                     /id="U550"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp="0.998001998001998"
                     /psig="0.998001998001998"
                     /xcortree=1259
                     /SigmaFactorBS="tcagcatcaatgaaatcaaacagattcatgaaacaACCCGCA
                     CAGatctgccgtttgTGCATGAACTGTATCAAGAGacactgccgcatatcattcagca
                     c"
                     /listShort="yfnE, yfnD"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    725268..725287
                     /Source="Nicolas_upshift_promotors"
                     /id="U550"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp="0.998001998001998"
                     /psig="0.998001998001998"
                     /xcortree=1259
                     /SigmaFactorBS="tcagcatcaatgaaatcaaacagattcatgaaacaACCCGCA
                     CAGatctgccgtttgTGCATGAACTGTATCAAGAGacactgccgcatatcattcagca
                     c"
                     /listShort="yfnE, yfnD"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        725271
                     /Source="Nicolas_upshifts"
                     /id="U550"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp="0.998001998001998"
                     /psig="0.998001998001998"
                     /xcortree=1259
                     /SigmaFactorBS="tcagcatcaatgaaatcaaacagattcatgaaacaACCCGCA
                     CAGatctgccgtttgTGCATGAACTGTATCAAGAGacactgccgcatatcattcagca
                     c"
                     /listShort="yfnE, yfnD"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             725397..726575
                     /gene="yfnE"
                     /locus_tag="BSU_07300"
                     /old_locus_tag="BSU07300"
                     /EC_number="2.4.1.-"
                     /function="16.5: Explore"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative glycosyltransferase (complex
                     carbohydrate synthase)"
                     /protein_id="NP_388611.1"
                     /db_xref="EnsemblGenomes-Gn:BSU07300"
                     /db_xref="EnsemblGenomes-Tr:CAB12549"
                     /db_xref="GOA:O06483"
                     /db_xref="InterPro:IPR001173"
                     /db_xref="InterPro:IPR029044"
                     /db_xref="SubtiList:BG12976"
                     /db_xref="UniProtKB/Swiss-Prot:O06483"
                     /translation="MKASVIIPAYNSKERLYNSLLSLNQQECDEEFEVIVADNGSEDG
                     TLSMLESFQADFPLIFTRIKENRGIAYGRNQALRNARGDILIFHDSDMLAAKDLVAKH
                     IKAHENEENLVVCGLFWKRIYSFYYERFEEEHKEQLAKLTGEMPKKDKQKLLEEADIK
                     NGSFLDKSFDLDTDFIDVLKKILDEYGDDLKGYHMPWRFFITNNSSVKRKHVVDLGLF
                     DEGIVRYGFEDYDLGIRLHQAGLTFRLRRDIVSVHQEHPSNCKSVDDIRANIAYMCDK
                     YNNIRSLDVHLAFNGPFPPDMTNRIMADIQKLLESQKYDMLLNLFLELLHVVKERNID
                     PDWRKKSPRVTAKSFDLQTVRKLLPKAKKKLGVNDFANALYALVNDLLHVDLRSLDVV
                     *"
                     /label="yfnE CDS"
     gene            725397..726575
                     /gene="yfnE"
                     /locus_tag="BSU_07300"
                     /old_locus_tag="BSU07300"
                     /label="yfnE gene"
     promotor_-35    726116..726122
                     /Source="Nicolas_upshift_promotors"
                     /id="U551"
                     /multdbtbs="-"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp="0.383616383616384"
                     /psig="0.913086913086913"
                     /xcortree=307
                     /SigmaFactorBS="tcgggatcaggcttcatcaggccggATTGACCttcaggcttc
                     gccgTGATATTGTCAGTGTTCATCaggaacatccaagcaattgtaagtctgtagacga
                     t"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    726137..726156
                     /Source="Nicolas_upshift_promotors"
                     /id="U551"
                     /multdbtbs="-"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp="0.383616383616384"
                     /psig="0.913086913086913"
                     /xcortree=307
                     /SigmaFactorBS="tcgggatcaggcttcatcaggccggATTGACCttcaggcttc
                     gccgTGATATTGTCAGTGTTCATCaggaacatccaagcaattgtaagtctgtagacga
                     t"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        726151
                     /Source="Nicolas_upshifts"
                     /id="U551"
                     /multdbtbs="-"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp="0.383616383616384"
                     /psig="0.913086913086913"
                     /xcortree=307
                     /SigmaFactorBS="tcgggatcaggcttcatcaggccggATTGACCttcaggcttc
                     gccgTGATATTGTCAGTGTTCATCaggaacatccaagcaattgtaagtctgtagacga
                     t"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             726576..727511
                     /gene="yfnD"
                     /locus_tag="BSU_07310"
                     /old_locus_tag="BSU07310"
                     /EC_number="2.4.1.-"
                     /function="16.5: Explore"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative glycosyltransferase (complex
                     carbohydrate synthase)"
                     /protein_id="NP_388612.1"
                     /db_xref="EnsemblGenomes-Gn:BSU07310"
                     /db_xref="EnsemblGenomes-Tr:CAB12550"
                     /db_xref="InterPro:IPR005069"
                     /db_xref="InterPro:IPR029044"
                     /db_xref="SubtiList:BG12975"
                     /db_xref="UniProtKB/Swiss-Prot:O31542"
                     /translation="MSTFHFSTIVSRTHIFKLMPMIHSLHEHCDDFHLYVLCVDQKAY
                     ELLQHVPWEHVTFVQLHEMEDPELLKAKSNRTFHEYCWTLKPAFLFHVMSKWDDAEYF
                     AHMDTDLFFFSDPARIFAENPTASLYLTDHRNSPRFMSYYDRTGRFNTGFVGAGNTKE
                     AYEAVWQWRQDCIEFCTVEMDTERKTYGDQRYVEKWPEQFKGVHVVKSIGANTALWNI
                     ENYKVGQKDGRVYIDETPLIFYHFSGFTLVTEKEFNLCWYYRIEDEATIKMIYMPYIL
                     NLKRWIDEIQSAFPDFADGFIPKHAVPDTHFIQLD*"
                     /label="yfnD CDS"
     gene            726576..727511
                     /gene="yfnD"
                     /locus_tag="BSU_07310"
                     /old_locus_tag="BSU07310"
                     /label="yfnD gene"
     downshifts      727383
                     /Source="Nicolas_upshifts"
                     /id="D359"
                     /incds=1
                     /nref=1
                     /ntot=52
                     /MaxReadThrough="5.41459"
                     /MaxDrop="2.6465"
                     /score="34.8532284"
                     /energy="-15.2"
                     /TU="U549,U550"
                     /idTUdmin="U549"
                     /TUdmin="-110"
                     /isTUend="FALSE"
                     /label="downshifts"
     downshifts      727493
                     /Source="Nicolas_upshifts"
                     /id="D360"
                     /incds=0
                     /nref=2
                     /ntot=30
                     /MaxReadThrough="2.32849"
                     /MaxDrop="5.65066"
                     /score="34.8532284"
                     /energy="-15.2"
                     /TU="NA"
                     /idTUdmin="U549"
                     /TUdmin=0
                     /isTUend="TRUE"
                     /label="downshifts"
     downshifts      complement(727534)
                     /Source="Nicolas_upshifts"
                     /id="D361"
                     /incds=0
                     /nref=158
                     /ntot=249
                     /MaxReadThrough="1.15199"
                     /MaxDrop="4.97014"
                     /score="32.9697757"
                     /energy="-15.2"
                     /TU="NA"
                     /idTUdmin="U552"
                     /TUdmin=13
                     /isTUend="TRUE"
                     /label="downshifts"
     CDS             complement(727542..728771)
                     /gene="yfnC"
                     /locus_tag="BSU_07320"
                     /old_locus_tag="BSU07320"
                     /function="16.1: Circulate"
                     /function="16.8: Protect"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 15849754, 16850406;
                     Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="putative efflux transporter"
                     /protein_id="NP_388613.1"
                     /db_xref="EnsemblGenomes-Gn:BSU07320"
                     /db_xref="EnsemblGenomes-Tr:CAB12551"
                     /db_xref="GOA:O06481"
                     /db_xref="InterPro:IPR011701"
                     /db_xref="InterPro:IPR020846"
                     /db_xref="InterPro:IPR036259"
                     /db_xref="SubtiList:BG12974"
                     /db_xref="UniProtKB/Swiss-Prot:O06481"
                     /translation="MAIAAPLKEKTVQKPGTTVYPILIIIGICHMLNDSLQAVIPAMF
                     PILERSMSLTFTQLGIIAFTLNMVSSVMQPVVGWYTDKRPRPYALPVGLTASMLGILG
                     LAFAPSFITILCCVFFIGLGSAIFHPEGSRVAYMAAGTKRGLAQSIYQVGGNSGQAMA
                     PLITALILVPLGQFGAVWFTLVAALAVMFLMYIAKWYASRLGSLAQKSGKQKKTAENT
                     AITKSVVSALIIIIFLIFARSWYTSAIGNFYTFYAMDTYHVSIQQAQSYIFVFLLFGA
                     IGTFLGGPLADRFGKRFVILGSLLCSAPLAIVLPFAGPVLAYGVLALIGLVLMSSFSV
                     TVVYAQELVPGKIGTMSGLTVGLAFGMGAIGAVALGALIDAAGLTPTMIAIAFLPVLG
                     ILAFLLPSDQKLREWHS*"
                     /label="yfnC CDS"
     gene            complement(727542..728771)
                     /gene="yfnC"
                     /locus_tag="BSU_07320"
                     /old_locus_tag="BSU07320"
                     /label="yfnC gene"
     promotor_-10    complement(728800..728819)
                     /Source="Nicolas_upshift_promotors"
                     /id="U552"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.909090909090909"
                     /psig="0.997002997002997"
                     /xcortree=2717
                     /SigmaFactorBS="ggctgacggtatttctttcataagaatcttttttccTCTTGA
                     TAaattcttcaccttatGAATAATATGGTGGTATGCTttggttatatatgtaaggagg
                     a"
                     /listShort="yfnC"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(728818)
                     /Source="Nicolas_upshifts"
                     /id="U552"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.909090909090909"
                     /psig="0.997002997002997"
                     /xcortree=2717
                     /SigmaFactorBS="ggctgacggtatttctttcataagaatcttttttccTCTTGA
                     TAaattcttcaccttatGAATAATATGGTGGTATGCTttggttatatatgtaaggagg
                     a"
                     /listShort="yfnC"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(728835..728842)
                     /Source="Nicolas_upshift_promotors"
                     /id="U552"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.909090909090909"
                     /psig="0.997002997002997"
                     /xcortree=2717
                     /SigmaFactorBS="ggctgacggtatttctttcataagaatcttttttccTCTTGA
                     TAaattcttcaccttatGAATAATATGGTGGTATGCTttggttatatatgtaaggagg
                     a"
                     /listShort="yfnC"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             complement(728882..729589)
                     /gene="pynN"
                     /locus_tag="BSU_07330"
                     /old_locus_tag="BSU07330"
                     /EC_number="3.1.3.-"
                     /function="16.11: Scavenge (Catabolism)"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 2b: Function from indirect experimental
                     evidences (e.g. phenotypes); Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="pyrimidine nucleotide phosphatase (promiscuous)"
                     /protein_id="NP_388614.1"
                     /db_xref="EnsemblGenomes-Gn:BSU07330"
                     /db_xref="EnsemblGenomes-Tr:CAB12552"
                     /db_xref="GOA:O06480"
                     /db_xref="InterPro:IPR006439"
                     /db_xref="InterPro:IPR011951"
                     /db_xref="InterPro:IPR023198"
                     /db_xref="InterPro:IPR023214"
                     /db_xref="InterPro:IPR036412"
                     /db_xref="PDB:3ED5"
                     /db_xref="PDB:3I76"
                     /db_xref="SubtiList:BG12973"
                     /db_xref="UniProtKB/Swiss-Prot:O06480"
                     /translation="MKRYRTLLFDVDDTILDFQAAEALALRLLFEDQNIPLTNDMKAQ
                     YKTINQGLWRAFEEGKMTRDEVVNTRFSALLKEYGYEADGALLEQKYRRFLEEGHQLI
                     DGAFDLISNLQQQFDLYIVTNGVSHTQYKRLRDSGLFPFFKDIFVSEDTGFQKPMKEY
                     FNYVFERIPQFSAEHTLIIGDSLTADIKGGQLAGLDTCWMNPDMKPNVPEIIPTYEIR
                     KLEELYHILNIENTVSC*"
                     /label="pynN CDS"
     gene            complement(728882..729589)
                     /gene="pynN"
                     /locus_tag="BSU_07330"
                     /old_locus_tag="BSU07330"
                     /label="pynN gene"
     downshifts      complement(728911)
                     /Source="Nicolas_upshifts"
                     /id="D362"
                     /incds=0
                     /nref=25
                     /ntot=169
                     /MaxReadThrough="2.75071"
                     /MaxDrop="4.28644"
                     /score="1.09492978"
                     /energy="-15.7"
                     /TU="NA"
                     /idTUdmin="U553"
                     /TUdmin=0
                     /isTUend="TRUE"
                     /label="downshifts"
     misc_feature    complement(729612..729631)
                     /Source="Nicolas_upshift_promotors"
                     /id="U553"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.985014985014985"
                     /psig="0.998001998001998"
                     /xcortree=3118
                     /SigmaFactorBS="ttattaaacaaataatctcttttcagccggcggtgcctcacc
                     cgccggctttttcctttttttaTGTGCTATACTTTGAATACAtatgagaaagggagac
                     a"
                     /listShort="yfnB"
                     /GFF_Attribute="listLong"
                     /label="promotor_single_box"
                     /note="Geneious type: promotor_single_box"
     upshifts        complement(729635)
                     /Source="Nicolas_upshifts"
                     /id="U553"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.985014985014985"
                     /psig="0.998001998001998"
                     /xcortree=3118
                     /SigmaFactorBS="ttattaaacaaataatctcttttcagccggcggtgcctcacc
                     cgccggctttttcctttttttaTGTGCTATACTTTGAATACAtatgagaaagggagac
                     a"
                     /listShort="yfnB"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             complement(729681..731066)
                     /gene="mtrA"
                     /locus_tag="BSU_07340"
                     /old_locus_tag="BSU07340"
                     /function="16.1: Circulate"
                     /experiment="publication(s) with functional evidences,
                     PMID:12022921, 15849754, 16850406, 17114254, 18632116"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 12022921, 15849754,
                     16850406, 17114254, 18632116; Product type t :
                     transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="methylthioribose permease"
                     /protein_id="NP_388615.1"
                     /db_xref="EnsemblGenomes-Gn:BSU07340"
                     /db_xref="EnsemblGenomes-Tr:CAB12553"
                     /db_xref="GOA:Q797A7"
                     /db_xref="InterPro:IPR002293"
                     /db_xref="SubtiList:BG12972"
                     /db_xref="UniProtKB/Swiss-Prot:Q797A7"
                     /translation="MSSLFRKKPLETLSAQSKSKSLARTLSAFDLTLLGIGCVIGTGI
                     FVITGTVAATGAGPALIISFILAGLACALAAFCYAEFSSSIPISGSVYSYSYVTLGEL
                     LAFLIGWDLMLEYVIALSAVATGWSSYFQSLLAGFNLHIPAALTGAPGSMAGAVFNLP
                     AAVIILLITAIVSRGVKESTRFNNVIVLMKIAIILLFIIVGIGYVKPDNWSPFMPFGM
                     KGVILSAATVFFAYLGFDAVSNASEEVKNPQKNMPVGIISALAVCTVLYIAVSLVLTG
                     MMPYAKLNVGDPVSFALKFVGQDAVAGIISVGAIIGITTVMLALLYAQVRLTFAMSRD
                     GLLPGLFAKVHPSFKTPFRNTWLTGIVAAGIAGFINLGTLAHLVNMGTLAAFTVISIA
                     VIVLRKKHPEIKASFRVPFVPVVPIISAGICLWFMYSLPGVTWLSFVIWIAVGTLVYF
                     LYSRKHSLLNK*"
                     /label="mtrA CDS"
     gene            complement(729681..731066)
                     /gene="mtrA"
                     /locus_tag="BSU_07340"
                     /old_locus_tag="BSU07340"
                     /label="mtrA gene"
     downshifts      complement(729703)
                     /Source="Nicolas_upshifts"
                     /id="D363"
                     /incds=0
                     /nref=8
                     /ntot=91
                     /MaxReadThrough="3.68565"
                     /MaxDrop="4.73728"
                     /score="31.1617384"
                     /energy="-15.4"
                     /TU="U554"
                     /idTUdmin="U554"
                     /TUdmin="-770"
                     /isTUend="FALSE"
                     /label="downshifts"
     promotor_-10    complement(731115..731134)
                     /Source="Nicolas_upshift_promotors"
                     /id="U554"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.913086913086913"
                     /psig=1
                     /xcortree=2397
                     /SigmaFactorBS="tgtttcgcttctatcatttaaagcagaaaaatatttTATTGA
                     CTacgtcaaatttcgaCAATATAATACAACAAGAACtgcatataatgattagaatatt
                     t"
                     /listShort="yfnA, yfnB"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(731132)
                     /Source="Nicolas_upshifts"
                     /id="U554"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.913086913086913"
                     /psig=1
                     /xcortree=2397
                     /SigmaFactorBS="tgtttcgcttctatcatttaaagcagaaaaatatttTATTGA
                     CTacgtcaaatttcgaCAATATAATACAACAAGAACtgcatataatgattagaatatt
                     t"
                     /listShort="yfnA, yfnB"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(731149..731156)
                     /Source="Nicolas_upshift_promotors"
                     /id="U554"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.913086913086913"
                     /psig=1
                     /xcortree=2397
                     /SigmaFactorBS="tgtttcgcttctatcatttaaagcagaaaaatatttTATTGA
                     CTacgtcaaatttcgaCAATATAATACAACAAGAACtgcatataatgattagaatatt
                     t"
                     /listShort="yfnA, yfnB"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-35    731234..731241
                     /Source="Nicolas_upshift_promotors"
                     /id="U555"
                     /multdbtbs="-"
                     /comp="M10"
                     /sig="SigD"
                     /pcomp=1
                     /psig=1
                     /xcortree=2800
                     /SigmaFactorBS="aacagcgttgtcgtatcataggatagtaatttttactaatcg
                     tatATTCAATTttatgcaagatgaACCGATAGAAAAAATAGATtcgcccatattttga
                     t"
                     /listShort="yfmT, yfmS"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     upshifts        731249
                     /Source="Nicolas_upshifts"
                     /id="U555"
                     /multdbtbs="-"
                     /comp="M10"
                     /sig="SigD"
                     /pcomp=1
                     /psig=1
                     /xcortree=2800
                     /SigmaFactorBS="aacagcgttgtcgtatcataggatagtaatttttactaatcg
                     tatATTCAATTttatgcaagatgaACCGATAGAAAAAATAGATtcgcccatattttga
                     t"
                     /listShort="yfmT, yfmS"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-10    731255..731273
                     /Source="Nicolas_upshift_promotors"
                     /id="U555"
                     /multdbtbs="-"
                     /comp="M10"
                     /sig="SigD"
                     /pcomp=1
                     /psig=1
                     /xcortree=2800
                     /SigmaFactorBS="aacagcgttgtcgtatcataggatagtaatttttactaatcg
                     tatATTCAATTttatgcaagatgaACCGATAGAAAAAATAGATtcgcccatattttga
                     t"
                     /listShort="yfmT, yfmS"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     CDS             731316..732773
                     /gene="vdhT"
                     /locus_tag="BSU_07350"
                     /old_locus_tag="BSU07350"
                     /EC_number="1.2.1.67"
                     /function="16.11: Scavenge (Catabolism)"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 1b: Function from experimental evidences
                     in the studied species; PubMedId: 15033535, 26658822;
                     Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="vanillin dehydrogenase"
                     /protein_id="NP_388616.1"
                     /db_xref="EnsemblGenomes-Gn:BSU07350"
                     /db_xref="EnsemblGenomes-Tr:CAB12554"
                     /db_xref="GOA:O06478"
                     /db_xref="InterPro:IPR015590"
                     /db_xref="InterPro:IPR016161"
                     /db_xref="InterPro:IPR016162"
                     /db_xref="InterPro:IPR029510"
                     /db_xref="SubtiList:BG12971"
                     /db_xref="UniProtKB/Swiss-Prot:O06478"
                     /translation="MFQYEELNKQFIGGKWQEGSSPNVLENKNPYTQKTFTTFRKATA
                     DDVDEAYRAAALAKKKWDAVNPFEKRTILEKAVTYIEENEEAIIYLIMEELGGTRLKA
                     AFEIGLVKNIIKEAATFPIRMEGKILPSTIDGKENRLYRVPAGVVGVISPFNFPFFLS
                     MKSVAPALGAGNGVVLKPHEETPICGGTLIAKIFENAGIPAGLLNVVVTDIAEIGDSF
                     VEHPVPRIISFTGSTKVGSYIGQLAMKHFKKPLLELGGNSAFIVLEDADIEYAVNAAV
                     FSRFTHQGQICMSANRVLVHSSIYDKFLELYQAKVESLKVGDPMDPDTIIGPLINSRQ
                     TDGLMKTVEQAIEEGAVPVKLGGFNGTIVEPTILKDVKPFMSIAKEELFGPVVSFMKF
                     DSEDEAVDIANETPFGLSGAVHTSNLERGVAFAKRIETGMIHVNDTTINDEPNVAFGG
                     EKQSGLGRLNGEWSLEEFTTLKWISVQHEKRSFPY*"
                     /label="vdhT CDS"
     gene            731316..732773
                     /gene="vdhT"
                     /locus_tag="BSU_07350"
                     /old_locus_tag="BSU07350"
                     /label="vdhT gene"
     promotor_-10    complement(732109..732128)
                     /Source="Nicolas_upshift_promotors"
                     /id="U556"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp="0.999000999001"
                     /psig="0.999000999001"
                     /xcortree=1237
                     /SigmaFactorBS="ctgacatgcaaatctgcccttgatgtgtaaatcGGCTGAACA
                     CcgccgcattgacCGCATATTCTATATCTGCATcctcaagtacgatgaaggcgctgtt
                     c"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(732123)
                     /Source="Nicolas_upshifts"
                     /id="U556"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp="0.999000999001"
                     /psig="0.999000999001"
                     /xcortree=1237
                     /SigmaFactorBS="ctgacatgcaaatctgcccttgatgtgtaaatcGGCTGAACA
                     CcgccgcattgacCGCATATTCTATATCTGCATcctcaagtacgatgaaggcgctgtt
                     c"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(732141..732150)
                     /Source="Nicolas_upshift_promotors"
                     /id="U556"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp="0.999000999001"
                     /psig="0.999000999001"
                     /xcortree=1237
                     /SigmaFactorBS="ctgacatgcaaatctgcccttgatgtgtaaatcGGCTGAACA
                     CcgccgcattgacCGCATATTCTATATCTGCATcctcaagtacgatgaaggcgctgtt
                     c"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             732787..733647
                     /gene="yfmS"
                     /locus_tag="BSU_07360"
                     /old_locus_tag="BSU07360"
                     /function="16.5: Explore"
                     /function="16.3: Control"
                     /function="16.12: Sense"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 15033535, 27899502;
                     Product type rc: receptor"
                     /codon_start=1
                     /transl_table=11
                     /product="chemotaxis sensory transducer (sensed target
                     unknown)"
                     /protein_id="NP_388617.1"
                     /db_xref="EnsemblGenomes-Gn:BSU07360"
                     /db_xref="EnsemblGenomes-Tr:CAB12555"
                     /db_xref="GOA:O06477"
                     /db_xref="InterPro:IPR004089"
                     /db_xref="InterPro:IPR029151"
                     /db_xref="SubtiList:BG12970"
                     /db_xref="UniProtKB/Swiss-Prot:O06477"
                     /translation="MELTINTEKETADILDAFIKVAPYLNSLVQDDITIGIYDTEKLL
                     VNIPAKTFSLNVKAGDPLQEGDIITDAIRSNQKKTSMVPKELFGFPLIARAIPLHDEN
                     GRVIGGVGLGTSLEESSKLHDVAESLSAVVEQTAAAISDISESINGFSTQMSGISSQA
                     KKVSESAGEIADISVTVKGISDQSNLLGLNAAIEAARAGESGKGFSVVADEIRKLATH
                     SKENVGQIDQITKKIHSLLKGLEESIESINQHTDGQAAAVEQISATMQEISGSAQHLA
                     KMAEKALEEE*"
                     /label="yfmS CDS"
     gene            732787..733647
                     /gene="yfmS"
                     /locus_tag="BSU_07360"
                     /old_locus_tag="BSU07360"
                     /label="yfmS gene"
     downshifts      733631
                     /Source="Nicolas_upshifts"
                     /id="D364"
                     /incds=0
                     /nref=208
                     /ntot=237
                     /MaxReadThrough="2.9987"
                     /MaxDrop="6.02377"
                     /score="31.9989755"
                     /energy="-16.7"
                     /TU="U555"
                     /idTUdmin="U555"
                     /TUdmin="-22"
                     /isTUend="TRUE"
                     /label="downshifts"
     promotor_-35    733715..733722
                     /Source="Nicolas_upshift_promotors"
                     /id="U557"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.953046953046953"
                     /psig=1
                     /xcortree=1991
                     /SigmaFactorBS="tatcctgcatttccatgaaattcgtctgacgtttTACTAGTT
                     ttattccagcggcTGATTTAAAATGTACACATGaacttacgtgaggattgataggaac
                     c"
                     /listShort="yfmR, yfmQ"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    733736..733755
                     /Source="Nicolas_upshift_promotors"
                     /id="U557"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.953046953046953"
                     /psig=1
                     /xcortree=1991
                     /SigmaFactorBS="tatcctgcatttccatgaaattcgtctgacgtttTACTAGTT
                     ttattccagcggcTGATTTAAAATGTACACATGaacttacgtgaggattgataggaac
                     c"
                     /listShort="yfmR, yfmQ"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        733741
                     /Source="Nicolas_upshifts"
                     /id="U557"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.953046953046953"
                     /psig=1
                     /xcortree=1991
                     /SigmaFactorBS="tatcctgcatttccatgaaattcgtctgacgtttTACTAGTT
                     ttattccagcggcTGATTTAAAATGTACACATGaacttacgtgaggattgataggaac
                     c"
                     /listShort="yfmR, yfmQ"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             733782..735671
                     /gene="ettA"
                     /locus_tag="BSU_07370"
                     /old_locus_tag="BSU07370"
                     /EC_number="3.6.3.-"
                     /function="16.3: Control"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 10715006, 16109936,
                     18848624, 19948254, 24389465, 24389466; Product type r :
                     regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="putative energy-dependent translational
                     throttleA"
                     /protein_id="NP_388618.1"
                     /db_xref="EnsemblGenomes-Gn:BSU07370"
                     /db_xref="EnsemblGenomes-Tr:CAB12556"
                     /db_xref="GOA:O06476"
                     /db_xref="InterPro:IPR003439"
                     /db_xref="InterPro:IPR003593"
                     /db_xref="InterPro:IPR017871"
                     /db_xref="InterPro:IPR027417"
                     /db_xref="InterPro:IPR032524"
                     /db_xref="InterPro:IPR032781"
                     /db_xref="SubtiList:BG12969"
                     /db_xref="UniProtKB/Swiss-Prot:O06476"
                     /translation="MSILKAENLYKTYGDKTLFDHISFHIEENERIGLIGPNGTGKST
                     LLKVIAGLESIEEGEITKSGSVQVEFLHQDPELPAGQTVLEHIYSGESAVMKTLREYE
                     KALYELGKDPENEQRQKHLLAAQAKMDANNAWDANTLAKTVLSKLGVNDVTKPVNELS
                     GGQKKRVAIAKNLIQPADLLILDEPTNHLDNETIEWLEGYLSQYPGAVMLVTHDRYFL
                     NRVTNRIYELERGSLYTYKGNYEVFLEKRAEREAQAEQKETKRQNLLRRELAWLRRGA
                     KARSTKQKARIDRVETLKEQTGPQSSGSLDFAIGSHRLGKQVIEAENVMIAYDGRMLV
                     DRFNELVIPGERIGIIGPNGIGKTTLLNALAGRHTPDGGDITIGQTVRIGYYTQDHSE
                     MNGELKVIDYIKETAEVVKTADGDMITAEQMLERFLFPRSMQQTYIRKLSGGEKRRLY
                     LLQVLMQEPNVLFLDEPTNDLDTETLSVLEDYIDQFPGVVITVSHDRYFLDRVVDRLI
                     VFEGNGVISRFQGSYSDYMEESKAKKAAPKPAAEEKTAEAEPKKKRKKLSYKDQLEWD
                     GIEDKIAQLEEKHEQLEADIAAAGSDFGKIQELMAEQAKTAEELEAAMDRWTELSLMI
                     EELES*"
                     /label="ettA CDS"
     gene            733782..735671
                     /gene="ettA"
                     /locus_tag="BSU_07370"
                     /old_locus_tag="BSU07370"
                     /label="ettA gene"
     downshifts      735655
                     /Source="Nicolas_upshifts"
                     /id="D365"
                     /incds=0
                     /nref=2
                     /ntot=134
                     /MaxReadThrough="2.98669"
                     /MaxDrop="2.72484"
                     /score="30.3267801"
                     /energy="-13.8"
                     /TU="U557"
                     /idTUdmin="U557"
                     /TUdmin="-572"
                     /isTUend="FALSE"
                     /label="downshifts"
     misc_feature    735735..735754
                     /Source="Nicolas_upshift_promotors"
                     /id="U558"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.5004995004995"
                     /psig="0.99000999000999"
                     /xcortree=1625
                     /SigmaFactorBS="gcagcaggccgcgctttttttcacataatggacaaaaacgaa
                     ccggcctgctTATGTTAGGATAAAGTTGTGtgtcagcggcacatggaaaactaacgga
                     g"
                     /listShort="yfmQ"
                     /listLong="yfmP, yfmO"
                     /label="promotor_single_box"
                     /note="Geneious type: promotor_single_box"
     upshifts        735743
                     /Source="Nicolas_upshifts"
                     /id="U558"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.5004995004995"
                     /psig="0.99000999000999"
                     /xcortree=1625
                     /SigmaFactorBS="gcagcaggccgcgctttttttcacataatggacaaaaacgaa
                     ccggcctgctTATGTTAGGATAAAGTTGTGtgtcagcggcacatggaaaactaacgga
                     g"
                     /listShort="yfmQ"
                     /listLong="yfmP, yfmO"
                     /label="upshifts"
     CDS             735794..736240
                     /gene="yfmQ"
                     /locus_tag="BSU_07380"
                     /old_locus_tag="BSU07380"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms; PubMedId: 26483775"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved hypothetical protein"
                     /protein_id="NP_388619.1"
                     /db_xref="EnsemblGenomes-Gn:BSU07380"
                     /db_xref="EnsemblGenomes-Tr:CAB12557"
                     /db_xref="GOA:O06475"
                     /db_xref="InterPro:IPR019723"
                     /db_xref="SubtiList:BG12968"
                     /db_xref="UniProtKB/Swiss-Prot:O06475"
                     /translation="MTWAIVMLILMSLVKIVLTCLPTGVIEWLLGKFEVHAKLSDENA
                     SLSLDGKRLEGAEKQKVIDQFNEAIFLEKYYIYPGDEERYLHPENGGTPLVIDTKKGK
                     KDVKLFVYRYDDHIDVVKQYKKKVIAYRVLSESLQKESLSVAGSLA*"
                     /label="yfmQ CDS"
     gene            735794..736240
                     /gene="yfmQ"
                     /locus_tag="BSU_07380"
                     /old_locus_tag="BSU07380"
                     /label="yfmQ gene"
     downshifts      complement(735796)
                     /Source="Nicolas_upshifts"
                     /id="D366"
                     /incds=0
                     /nref=48
                     /ntot=154
                     /MaxReadThrough="1.16717"
                     /MaxDrop="4.57866"
                     /score="0.689181271"
                     /energy="-10.2"
                     /TU="NA"
                     /idTUdmin="U559"
                     /TUdmin=1
                     /isTUend="TRUE"
                     /label="downshifts"
     promotor_-10    complement(735880..735883)
                     /Source="Nicolas_upshift_promotors"
                     /id="U559"
                     /multdbtbs="-"
                     /comp="M13"
                     /sig="Sig-"
                     /pcomp="0.597402597402597"
                     /psig="0.063936063936064"
                     /xcortree=1597
                     /SigmaFactorBS="tttccatctagagagagactcgcattttcgtcactcagcttg
                     gCGtgcacttcaaatttgccGAGCagccattctatgacgcctgtaggaagacaggtta
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(735885)
                     /Source="Nicolas_upshifts"
                     /id="U559"
                     /multdbtbs="-"
                     /comp="M13"
                     /sig="Sig-"
                     /pcomp="0.597402597402597"
                     /psig="0.063936063936064"
                     /xcortree=1597
                     /SigmaFactorBS="tttccatctagagagagactcgcattttcgtcactcagcttg
                     gCGtgcacttcaaatttgccGAGCagccattctatgacgcctgtaggaagacaggtta
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(735901..735902)
                     /Source="Nicolas_upshift_promotors"
                     /id="U559"
                     /multdbtbs="-"
                     /comp="M13"
                     /sig="Sig-"
                     /pcomp="0.597402597402597"
                     /psig="0.063936063936064"
                     /xcortree=1597
                     /SigmaFactorBS="tttccatctagagagagactcgcattttcgtcactcagcttg
                     gCGtgcacttcaaatttgccGAGCagccattctatgacgcctgtaggaagacaggtta
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     downshifts      736227
                     /Source="Nicolas_upshifts"
                     /id="D367"
                     /incds=0
                     /nref=254
                     /ntot=267
                     /MaxReadThrough="3.12706"
                     /MaxDrop="7.87026"
                     /score="13.6774886"
                     /energy="-8"
                     /TU="U558"
                     /idTUdmin="U557"
                     /TUdmin=0
                     /isTUend="TRUE"
                     /label="downshifts"
     promotor_-35    736303..736310
                     /Source="Nicolas_upshift_promotors"
                     /id="U560"
                     /multdbtbs="SigA"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.606393606393606"
                     /psig="0.999000999001"
                     /xcortree=2124
                     /SigmaFactorBS="gtcttttttattgttttttaaaacttaACGTTTACgttaagg
                     ttcaaaAGGTGTATAATGGTAACAGAaacggcgaagggggatttaccttggaatggat
                     g"
                     /listShort="yfmP, yfmO"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    736324..736343
                     /Source="Nicolas_upshift_promotors"
                     /id="U560"
                     /multdbtbs="SigA"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.606393606393606"
                     /psig="0.999000999001"
                     /xcortree=2124
                     /SigmaFactorBS="gtcttttttattgttttttaaaacttaACGTTTACgttaagg
                     ttcaaaAGGTGTATAATGGTAACAGAaacggcgaagggggatttaccttggaatggat
                     g"
                     /listShort="yfmP, yfmO"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        736336
                     /Source="Nicolas_upshifts"
                     /id="U560"
                     /multdbtbs="SigA"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.606393606393606"
                     /psig="0.999000999001"
                     /xcortree=2124
                     /SigmaFactorBS="gtcttttttattgttttttaaaacttaACGTTTACgttaagg
                     ttcaaaAGGTGTATAATGGTAACAGAaacggcgaagggggatttaccttggaatggat
                     g"
                     /listShort="yfmP, yfmO"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             736365..736787
                     /gene="copP"
                     /locus_tag="BSU_07390"
                     /old_locus_tag="BSU07390"
                     /function="16.3: Control"
                     /experiment="publication(s) with functional evidences,
                     PMID:14663075"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 14663075; Product type r:
                     regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator (MerR family) of
                     metal(copper) efflux transporter expression"
                     /protein_id="NP_388620.1"
                     /db_xref="EnsemblGenomes-Gn:BSU07390"
                     /db_xref="EnsemblGenomes-Tr:CAB12558"
                     /db_xref="GOA:O06474"
                     /db_xref="InterPro:IPR000551"
                     /db_xref="InterPro:IPR009061"
                     /db_xref="SubtiList:BG12967"
                     /db_xref="UniProtKB/Swiss-Prot:O06474"
                     /translation="MEWMKIDQVAKRSGLTKRTIRFYEEIGLIPAPKRTDGGVRLYSE
                     DDMEELEKVISTKEVLGFSLQELQHFMETSRQLELNKEGYLLSLDPKERKEKLEEIQE
                     TLNHQLDLIDEKIRTFQSFKERLQGMKGKAERAIQSIE*"
                     /label="copP CDS"
     gene            736365..736787
                     /gene="copP"
                     /locus_tag="BSU_07390"
                     /old_locus_tag="BSU07390"
                     /label="copP gene"
     downshifts      736623
                     /Source="Nicolas_upshifts"
                     /id="D368"
                     /incds=1
                     /nref=2
                     /ntot=135
                     /MaxReadThrough="4.24358"
                     /MaxDrop="2.69696"
                     /score="13.6774886"
                     /energy="-8"
                     /TU="U560"
                     /idTUdmin="U558"
                     /TUdmin=308
                     /isTUend="FALSE"
                     /label="downshifts"
     CDS             736853..738043
                     /gene="copO"
                     /locus_tag="BSU_07400"
                     /old_locus_tag="BSU07400"
                     /function="16.1: Circulate"
                     /function="16.8: Protect"
                     /experiment="publication(s) with functional evidences,
                     PMID:14663075, 15849754, 16850406"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 14663075, 15849754,
                     16850406; Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="metal (copper) efflux transporter"
                     /protein_id="NP_388621.1"
                     /db_xref="EnsemblGenomes-Gn:BSU07400"
                     /db_xref="EnsemblGenomes-Tr:CAB12559"
                     /db_xref="GOA:O06473"
                     /db_xref="InterPro:IPR001958"
                     /db_xref="InterPro:IPR011701"
                     /db_xref="InterPro:IPR020846"
                     /db_xref="InterPro:IPR036259"
                     /db_xref="SubtiList:BG12966"
                     /db_xref="UniProtKB/Swiss-Prot:O06473"
                     /translation="MDKTTQVNQKTGLLSQPKAVWAVAFACVISFMGIGLVDPILPAI
                     AAQLHASPSEVSLLFTSYLLVTGFMMFFSGAISSRIGAKWTLILGLIFIIVFAGLGGS
                     SSSIAQLVGYRGGWGLGNALFISTALAVIVGVSVGGSAQAIILYEAALGLGISVGPLA
                     GGELGSISWRAPFFGVSVLMFIALIAISFMLPKLPKPAKRVGVFDAMKALKYKGLLTM
                     AVSAFLYNFGFFILLAYSPFVLDLDEHGLGYVFFGWGLLLAITSVFTAPLVHKALGTV
                     RSLVVLFIAFAAILVIMGIWTDHQTLIITCIVVAGAVLGMVNTIMTTAVMGSAPVERS
                     IASSAYSSVRFIGGALAPWIAGMLSEHFTASTPYTVGGIVVFVGMLVLLMGRKHLAGI
                     KAGH*"
                     /label="copO CDS"
     gene            736853..738043
                     /gene="copO"
                     /locus_tag="BSU_07400"
                     /old_locus_tag="BSU07400"
                     /label="copO gene"
     downshifts      complement(738107)
                     /Source="Nicolas_upshifts"
                     /id="D369"
                     /incds=0
                     /nref=1
                     /ntot=10
                     /MaxReadThrough="-0.0437700000000003"
                     /MaxDrop="2.92105"
                     /score="-8.93016606"
                     /energy="-11.6"
                     /TU="NA"
                     /idTUdmin="U562"
                     /TUdmin=528
                     /isTUend="FALSE"
                     /label="downshifts"
     CDS             738334..738489
                     /gene="yfmN"
                     /locus_tag="BSU_07410"
                     /old_locus_tag="BSU07410"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 5: Unknown function"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="NP_388622.1"
                     /db_xref="EnsemblGenomes-Gn:BSU07410"
                     /db_xref="EnsemblGenomes-Tr:CAB12560"
                     /db_xref="SubtiList:BG12965"
                     /db_xref="UniProtKB/Swiss-Prot:O06472"
                     /translation="MDKAKPDEYDQKCLETLYQYIHSVMKNSFSRSSGLPLGKMRRIL
                     SCLPKES*"
                     /label="yfmN CDS"
     gene            738334..738489
                     /gene="yfmN"
                     /locus_tag="BSU_07410"
                     /old_locus_tag="BSU07410"
                     /label="yfmN gene"
     CDS             complement(738609..740165)
                     /gene="ettM"
                     /locus_tag="BSU_07420"
                     /old_locus_tag="BSU07420"
                     /EC_number="3.6.3.-"
                     /function="16.7: Manage energy"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 12486040, 16109936,
                     16684363, 22333191, 24389466; Product type r: regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="putative energy-sensing inhibitor of
                     translation"
                     /protein_id="NP_388623.2"
                     /db_xref="EnsemblGenomes-Gn:BSU07420"
                     /db_xref="EnsemblGenomes-Tr:CAB12571"
                     /db_xref="GOA:O34512"
                     /db_xref="InterPro:IPR003439"
                     /db_xref="InterPro:IPR003593"
                     /db_xref="InterPro:IPR017871"
                     /db_xref="InterPro:IPR027417"
                     /db_xref="InterPro:IPR032781"
                     /db_xref="SubtiList:BG12964"
                     /db_xref="UniProtKB/Swiss-Prot:O34512"
                     /translation="MSILSVKDLSHGFGDRAIFNNVSFRLLKGEHVGLIGANGEGKST
                     FMNIITGKLEPDEGKVEWSKNVRVGYLDQHTVLEKGKSIRDVLKDAFHYLFAMEEEMN
                     EIYNKMGEADPDELEKLLEEVGVIQDALTNNDFYVIDSKVEEIARGLGLSDIGLERDV
                     TDLSGGQRTKVLLAKLLLEKPEILLLDEPTNYLDEQHIEWLKRYLQEYENAFILISHD
                     IPFLNSVINLIYHVENQELTRYVGDYHQFMEVYEVKKQQLEAAYKKQQQEVAELKDFV
                     ARNKARVSTRNMAMSRQKKLDKMDMIELAAEKPKPEFHFKPARTSGKLIFETKDLVIG
                     YDSPLSRPLNLRMERGQKIALYGANGIGKTTLLKSLLGEIQPLEGSVERGEHIYTGYF
                     EQEVKETNNNTCIEEVWSEFPSYTQYEIRAALAKCGLTTKHIESRVSVLSGGEKAKVR
                     LCKLINSETNLLVLDEPTNHLDADAKEELKRALKEYKGSILLISHEPDFYMDIATETW
                     NCESWTTKVL*"
                     /label="ettM CDS"
     gene            complement(738609..740165)
                     /gene="ettM"
                     /locus_tag="BSU_07420"
                     /old_locus_tag="BSU07420"
                     /label="ettM gene"
     downshifts      complement(738633)
                     /Source="Nicolas_upshifts"
                     /id="D370"
                     /incds=0
                     /nref=173
                     /ntot=264
                     /MaxReadThrough="0.35675"
                     /MaxDrop="5.82627"
                     /score="21.7805812"
                     /energy="-12"
                     /TU="NA"
                     /idTUdmin="U562"
                     /TUdmin=2
                     /isTUend="TRUE"
                     /label="downshifts"
     promotor_-35    739995..740001
                     /Source="Nicolas_upshift_promotors"
                     /id="U561"
                     /multdbtbs="-"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp="0.994005994005994"
                     /psig="0.994005994005994"
                     /xcortree=894
                     /SigmaFactorBS="tttttgaccattcgacttttccCTCATCAggttcaagctttc
                     cGGTAATAATATTcatgaaggttgattttccttcaccgtttgcgccgatcaagccgac
                     g"
                     /listShort="yfmL"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    740016..740027
                     /Source="Nicolas_upshift_promotors"
                     /id="U561"
                     /multdbtbs="-"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp="0.994005994005994"
                     /psig="0.994005994005994"
                     /xcortree=894
                     /SigmaFactorBS="tttttgaccattcgacttttccCTCATCAggttcaagctttc
                     cGGTAATAATATTcatgaaggttgattttccttcaccgtttgcgccgatcaagccgac
                     g"
                     /listShort="yfmL"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        740033
                     /Source="Nicolas_upshifts"
                     /id="U561"
                     /multdbtbs="-"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp="0.994005994005994"
                     /psig="0.994005994005994"
                     /xcortree=894
                     /SigmaFactorBS="tttttgaccattcgacttttccCTCATCAggttcaagctttc
                     cGGTAATAATATTcatgaaggttgattttccttcaccgtttgcgccgatcaagccgac
                     g"
                     /listShort="yfmL"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-10    complement(740215..740234)
                     /Source="Nicolas_upshift_promotors"
                     /id="U562"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.854145854145854"
                     /psig="0.927072927072927"
                     /xcortree=2609
                     /SigmaFactorBS="gcaatttttctttttctttcctataCCTTTcaacattccgaa
                     tccTCCTTTATAATCAAAAGGGTgaatattacacgccgattgtgcgtgtttgataacg
                     a"
                     /listShort="yfmM"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(740219)
                     /Source="Nicolas_upshifts"
                     /id="U562"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.854145854145854"
                     /psig="0.927072927072927"
                     /xcortree=2609
                     /SigmaFactorBS="gcaatttttctttttctttcctataCCTTTcaacattccgaa
                     tccTCCTTTATAATCAAAAGGGTgaatattacacgccgattgtgcgtgtttgataacg
                     a"
                     /listShort="yfmM"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(740250..740254)
                     /Source="Nicolas_upshift_promotors"
                     /id="U562"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.854145854145854"
                     /psig="0.927072927072927"
                     /xcortree=2609
                     /SigmaFactorBS="gcaatttttctttttctttcctataCCTTTcaacattccgaa
                     tccTCCTTTATAATCAAAAGGGTgaatattacacgccgattgtgcgtgtttgataacg
                     a"
                     /listShort="yfmM"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-35    740275..740278
                     /Source="Nicolas_upshift_promotors"
                     /id="U563"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.608391608391608"
                     /psig=1
                     /xcortree=2547
                     /SigmaFactorBS="attcggaatgttgaaaggtataggaaagaaaaagaaaaATTG
                     cgttccgggcgaggtTTTGAGATACTATGGAATAGatttcaggaattgaggagaacaa
                     a"
                     /listShort="yfmL"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    740294..740313
                     /Source="Nicolas_upshift_promotors"
                     /id="U563"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.608391608391608"
                     /psig=1
                     /xcortree=2547
                     /SigmaFactorBS="attcggaatgttgaaaggtataggaaagaaaaagaaaaATTG
                     cgttccgggcgaggtTTTGAGATACTATGGAATAGatttcaggaattgaggagaacaa
                     a"
                     /listShort="yfmL"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        740297
                     /Source="Nicolas_upshifts"
                     /id="U563"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.608391608391608"
                     /psig=1
                     /xcortree=2547
                     /SigmaFactorBS="attcggaatgttgaaaggtataggaaagaaaaagaaaaATTG
                     cgttccgggcgaggtTTTGAGATACTATGGAATAGatttcaggaattgaggagaacaa
                     a"
                     /listShort="yfmL"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             740338..741468
                     /gene="yfmL"
                     /locus_tag="BSU_07430"
                     /old_locus_tag="BSU07430"
                     /EC_number="3.6.1.-"
                     /function="16.6: Maintain"
                     /function="16.3: Control"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 11976317; Product type
                     e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative ATP-dependent RNA helicase"
                     /protein_id="NP_388624.1"
                     /db_xref="EnsemblGenomes-Gn:BSU07430"
                     /db_xref="EnsemblGenomes-Tr:CAB12572"
                     /db_xref="GOA:O34750"
                     /db_xref="InterPro:IPR001650"
                     /db_xref="InterPro:IPR011545"
                     /db_xref="InterPro:IPR014001"
                     /db_xref="InterPro:IPR027417"
                     /db_xref="SubtiList:BG12963"
                     /db_xref="UniProtKB/Swiss-Prot:O34750"
                     /translation="MTQTWPFLHNAQSFIQENWNASGFQKPTPVQEQAAQLIMDGKDV
                     IAESPTGTGKTLAYALPVLERIKPEQKHPQAVILAPSRELVMQIFQVIQDWKAGSELR
                     AASLIGGANVKKQVEKLKKHPHIIVGTPGRVFELIKAKKLKMHEVKTIVLDETDQLVL
                     PEHRETMKQIIKTTLRDRQLLCFSATLKKETEDVLRELAQEPEVLKVQRSKAEAGKVK
                     HQYLICDQRDKVKLLQKLSRLEGMQALVFVRDIGNLSVYAEKLAYHHVELGVLHSEAK
                     KMERAKIIATFEDGEFPLLLATDIAARGLDIENLPYVIHADIPDEDGYVHRSGRTGRA
                     GKEGNVLSLVTKLEESKLKKMAKKLGVELSEAVYAGGKLKTK*"
                     /label="yfmL CDS"
     gene            740338..741468
                     /gene="yfmL"
                     /locus_tag="BSU_07430"
                     /old_locus_tag="BSU07430"
                     /label="yfmL gene"
     downshifts      741451
                     /Source="Nicolas_upshifts"
                     /id="D371"
                     /incds=0
                     /nref=43
                     /ntot=133
                     /MaxReadThrough="2.93747"
                     /MaxDrop="4.41385"
                     /score="23.4253604"
                     /energy="-5.9"
                     /TU="NA"
                     /idTUdmin="U563"
                     /TUdmin="-12"
                     /isTUend="TRUE"
                     /label="downshifts"
     CDS             741536..741982
                     /gene="yfmK"
                     /locus_tag="BSU_07440"
                     /old_locus_tag="BSU07440"
                     /EC_number="2.3.1.-"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative acetyltransferase"
                     /protein_id="NP_388625.1"
                     /db_xref="EnsemblGenomes-Gn:BSU07440"
                     /db_xref="EnsemblGenomes-Tr:CAB12573"
                     /db_xref="GOA:O34536"
                     /db_xref="InterPro:IPR000182"
                     /db_xref="InterPro:IPR016181"
                     /db_xref="SubtiList:BG12962"
                     /db_xref="UniProtKB/Swiss-Prot:O34536"
                     /translation="MASIDRFQVMQEPELKILEHWFENEDTRRRMDGMLLLDEWYARV
                     NKDKHDTVIMAYDGQLPAGMVVIEFGEERTYIGLIVNPLYRLKGYGKQILQKLMTEPD
                     FTSVREWVACIEEDNRISLACFQAAGFTLEDTEPDEDGFLTLILRN*"
                     /label="yfmK CDS"
     gene            741536..741982
                     /gene="yfmK"
                     /locus_tag="BSU_07440"
                     /old_locus_tag="BSU07440"
                     /label="yfmK gene"
     CDS             complement(742035..743054)
                     /gene="yfmJ"
                     /locus_tag="BSU_07450"
                     /old_locus_tag="BSU07450"
                     /EC_number="1.-.-.-"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative oxidoreductase"
                     /protein_id="NP_388626.1"
                     /db_xref="EnsemblGenomes-Gn:BSU07450"
                     /db_xref="EnsemblGenomes-Tr:CAB12574"
                     /db_xref="GOA:O34812"
                     /db_xref="InterPro:IPR011032"
                     /db_xref="InterPro:IPR013149"
                     /db_xref="InterPro:IPR020843"
                     /db_xref="InterPro:IPR036291"
                     /db_xref="SubtiList:BG12961"
                     /db_xref="UniProtKB/Swiss-Prot:O34812"
                     /translation="MTASQQQIQLARRPQGIPVHEDFRFETIPVPEPKQGEVLVKTLY
                     VSVDPYMRGRMQDTKSYVEPFALDKALSGGVIAEVVSDGNHLKKGDIVIGNLSWQEFS
                     AVSESALRKIDTSLAPASAYLGILGMTGLTAYFGLLDIGRPKEGETVVVSGAAGAVGS
                     TVGQIAKIKGARVVGIAGSDEKIDYLKQELQFDEAINYKTADDIQKALQNACPDGVDV
                     YFDNVGGPISDAVMNLLNEFARIPVCGAISSYNAESEADDMGPRVQSKLIKTKSLMQG
                     FIVSDYSDRFSEGAKQLAEWLKAGKLHYEETITEGFENIPDAFLGLFKGENKGKQLIK
                     VSDPS*"
                     /label="yfmJ CDS"
     gene            complement(742035..743054)
                     /gene="yfmJ"
                     /locus_tag="BSU_07450"
                     /old_locus_tag="BSU07450"
                     /label="yfmJ gene"
     downshifts      complement(742045)
                     /Source="Nicolas_upshifts"
                     /id="D372"
                     /incds=0
                     /nref=183
                     /ntot=252
                     /MaxReadThrough="2.26899"
                     /MaxDrop="5.73395"
                     /score="20.8047206"
                     /energy="-12.8"
                     /TU="NA"
                     /idTUdmin="U564"
                     /TUdmin=0
                     /isTUend="TRUE"
                     /label="downshifts"
     promotor_-10    complement(743075..743094)
                     /Source="Nicolas_upshift_promotors"
                     /id="U564"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.654345654345654"
                     /psig=1
                     /xcortree=3180
                     /SigmaFactorBS="accttttttgtatgccagcttacctTTTGTATTtcctctcct
                     gtcCATGTTACAGTGGTGTCAACcaagtgataggaggatgaaaatgacagcatctcag
                     c"
                     /listShort="yfmJ"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(743079)
                     /Source="Nicolas_upshifts"
                     /id="U564"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.654345654345654"
                     /psig=1
                     /xcortree=3180
                     /SigmaFactorBS="accttttttgtatgccagcttacctTTTGTATTtcctctcct
                     gtcCATGTTACAGTGGTGTCAACcaagtgataggaggatgaaaatgacagcatctcag
                     c"
                     /listShort="yfmJ"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     S_feature       complement(743081..743535)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_818856_819310_c"
                     /HighExp="S2, S1, Pyr, T4.0H, T0.0H, T-2.40H, T3.30H,
                     T-1.40H, T-0.40H, T2.0H"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.996"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S252"
     promotor_-35    complement(743107..743114)
                     /Source="Nicolas_upshift_promotors"
                     /id="U564"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.654345654345654"
                     /psig=1
                     /xcortree=3180
                     /SigmaFactorBS="accttttttgtatgccagcttacctTTTGTATTtcctctcct
                     gtcCATGTTACAGTGGTGTCAACcaagtgataggaggatgaaaatgacagcatctcag
                     c"
                     /listShort="yfmJ"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-35    743173..743180
                     /Source="Nicolas_upshift_promotors"
                     /id="U565"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.993006993006993"
                     /psig="0.999000999001"
                     /xcortree=1939
                     /SigmaFactorBS="atagatgagcttatgctttctacaagctctttTGTTTTAAaa
                     gttctctttagTCATTTATCATTATTAGAAAacagaacagaaaaagagctcctgtaca
                     c"
                     /listShort="S253"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    743194..743213
                     /Source="Nicolas_upshift_promotors"
                     /id="U565"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.993006993006993"
                     /psig="0.999000999001"
                     /xcortree=1939
                     /SigmaFactorBS="atagatgagcttatgctttctacaagctctttTGTTTTAAaa
                     gttctctttagTCATTTATCATTATTAGAAAacagaacagaaaaagagctcctgtaca
                     c"
                     /listShort="S253"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     S_feature       743201..744298
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_818976_820073"
                     /HighExp="Etha, dia5, Diami, C30, dia15, T5.0H, S8, T3.0H,
                     M0t90, LPhT"
                     /AntisenseName="yfmI"
                     /AntisenseCor="0.135213889213362"
                     /AntisenseRegPval="-1.6"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.999"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S253"
     upshifts        743201
                     /Source="Nicolas_upshifts"
                     /id="U565"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.993006993006993"
                     /psig="0.999000999001"
                     /xcortree=1939
                     /SigmaFactorBS="atagatgagcttatgctttctacaagctctttTGTTTTAAaa
                     gttctctttagTCATTTATCATTATTAGAAAacagaacagaaaaagagctcctgtaca
                     c"
                     /listShort="S253"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             complement(743536..744756)
                     /gene="yfmI"
                     /locus_tag="BSU_07460"
                     /old_locus_tag="BSU07460"
                     /function="16.1: Circulate"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 15849754, 16850406;
                     Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="putative efflux transporter"
                     /protein_id="NP_388627.1"
                     /db_xref="EnsemblGenomes-Gn:BSU07460"
                     /db_xref="EnsemblGenomes-Tr:CAB12575"
                     /db_xref="GOA:O34440"
                     /db_xref="InterPro:IPR011701"
                     /db_xref="InterPro:IPR020846"
                     /db_xref="InterPro:IPR036259"
                     /db_xref="SubtiList:BG12960"
                     /db_xref="UniProtKB/Swiss-Prot:O34440"
                     /translation="MSKGYYSILFSQTTTNLGFSLYTMVVISFLFKMTNSTTIASMVT
                     LISIIFRIFGSAILPLITIRLKLPLTIIISQLIQMLLLICLFYALLRTYSNQTLILVF
                     IIISCISFFNGWFSPLKSAIIGEIISPDRRVKANGLLSTVDQTFQFVGWSLGGLIIAF
                     LGEGYTIILTIFLLFTSLLSLLFCLPHGHANSVIREKNSPNKSIVSGWRYLFSQKKLR
                     TIIIMDLIESWAGMIWIGSVSLAFVNEVLHKGESWWGFINGAYYLGSMIGGFIIYKLS
                     ERFQNKLINFMLIGAVSYGSLTLIYGFISNSYLALILVLFMGPAYILRDLTQETLIQN
                     ITTEQTRINIMSARSSLVQFIFMFSILAIGAISDFLGVRLVYVSAGILLLVSAIYGFS
                     QLQFKKKVNKHISF*"
                     /label="yfmI CDS"
     gene            complement(743536..744756)
                     /gene="yfmI"
                     /locus_tag="BSU_07460"
                     /old_locus_tag="BSU07460"
                     /label="yfmI gene"
     promotor_-10    complement(744793..744812)
                     /Source="Nicolas_upshift_promotors"
                     /id="U566"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.899100899100899"
                     /psig="0.996003996003996"
                     /xcortree=2925
                     /SigmaFactorBS="gtaaatagtttacaaggaaatttttTCTTTACTtttgttgtt
                     ttaaggTGTTTAAATATGTTTAAGCTctttaccgagaaaaattattccaagggaggat
                     a"
                     /listShort="yfmI, S252, yfmJ"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(744800)
                     /Source="Nicolas_upshifts"
                     /id="U566"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.899100899100899"
                     /psig="0.996003996003996"
                     /xcortree=2925
                     /SigmaFactorBS="gtaaatagtttacaaggaaatttttTCTTTACTtttgttgtt
                     ttaaggTGTTTAAATATGTTTAAGCTctttaccgagaaaaattattccaagggaggat
                     a"
                     /listShort="yfmI, S252, yfmJ"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(744828..744835)
                     /Source="Nicolas_upshift_promotors"
                     /id="U566"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.899100899100899"
                     /psig="0.996003996003996"
                     /xcortree=2925
                     /SigmaFactorBS="gtaaatagtttacaaggaaatttttTCTTTACTtttgttgtt
                     ttaaggTGTTTAAATATGTTTAAGCTctttaccgagaaaaattattccaagggaggat
                     a"
                     /listShort="yfmI, S252, yfmJ"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-35    744854..744861
                     /Source="Nicolas_upshift_promotors"
                     /id="U567"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.96903096903097"
                     /psig=1
                     /xcortree=480
                     /SigmaFactorBS="ccttaaaacaacaaaagtaaagaaaaaatttccttgtaaacT
                     ATTTACTtttattctatttatTGTTATTGTTTATTTAAGTTctctgactattctatca
                     a"
                     /listShort="S254, yfmG, S256, S257, S258, S259, yfmA,
                     yflT"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     S_feature       744873..745048
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_820648_820823"
                     /HighExp="LoTm, T-1.10H, T-0.40H, S3, M9-stat, T0.0H,
                     T-1.40H, BC, T2.0H, T5.0H"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="0.98260400000000003"
                     /TUshortSig="SigA"
                     /TUshortPSig=1
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S254"
     upshifts        744873
                     /Source="Nicolas_upshifts"
                     /id="U567"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.96903096903097"
                     /psig=1
                     /xcortree=480
                     /SigmaFactorBS="ccttaaaacaacaaaagtaaagaaaaaatttccttgtaaacT
                     ATTTACTtttattctatttatTGTTATTGTTTATTTAAGTTctctgactattctatca
                     a"
                     /listShort="S254, yfmG, S256, S257, S258, S259, yfmA,
                     yflT"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-10    744876..744895
                     /Source="Nicolas_upshift_promotors"
                     /id="U567"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.96903096903097"
                     /psig=1
                     /xcortree=480
                     /SigmaFactorBS="ccttaaaacaacaaaagtaaagaaaaaatttccttgtaaacT
                     ATTTACTtttattctatttatTGTTATTGTTTATTTAAGTTctctgactattctatca
                     a"
                     /listShort="S254, yfmG, S256, S257, S258, S259, yfmA,
                     yflT"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     downshifts      745005
                     /Source="Nicolas_upshifts"
                     /id="D373"
                     /incds=0
                     /nref=34
                     /ntot=117
                     /MaxReadThrough="8.67835"
                     /MaxDrop="8.45742"
                     /score="4.02328636"
                     /energy="-13.7"
                     /TU="U567"
                     /idTUdmin="U565"
                     /TUdmin=748
                     /isTUend="FALSE"
                     /label="downshifts"
     CDS             745092..746555
                     /gene="yfmG"
                     /locus_tag="BSU_07480"
                     /old_locus_tag="BSU07480"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative enzyme"
                     /protein_id="NP_388629.1"
                     /db_xref="EnsemblGenomes-Gn:BSU07480"
                     /db_xref="EnsemblGenomes-Tr:CAB12577"
                     /db_xref="InterPro:IPR005532"
                     /db_xref="InterPro:IPR016187"
                     /db_xref="SubtiList:BG12958"
                     /db_xref="UniProtKB/Swiss-Prot:O34722"
                     /translation="MTLLMQDHKSIYNKDIEILIEVEELITSVPENKKNDFKSLIDNR
                     IMTLLNKIQHPVAAENVFGMCIAYPNTYIRYRLIDFVEKWVPYFSAVETIINLTQDPD
                     DLVSFKAMDVCANHKIEESVAYLSSIIDDVRESISYPKKPVGLGAQKVLSTLLDIFGV
                     EKHEELVMLKNYFDQNGILPNNFDFEEKIPQSLIEEFEKTEEDGMILIPGGFFEFGLN
                     ENEIPDKTFNWKDAVPRQKVWLPPFFIDKYPVTNKDYDIFTEFIEENGHIFCHPNEPQ
                     NKQHRRNTYWDDRYLDNHPVTGIDFYDAFAYARYKGKELPTEFQWEKAARGEKGNVWP
                     WGDKFDPAKVQYAGSLYNEPITSLKSWRENLLKAHADKELNHLTSDIFEQNGESPYGV
                     CGMIGGTWEWTRSELKTKRAFHPIFENVPFNSVNSFAVLKGGSFFSHPGLMFPSFRAK
                     DIPFCRHNEMGIRCVKNIPVYKIRESINGPITNKAIY*"
                     /label="yfmG CDS"
     gene            745092..746555
                     /gene="yfmG"
                     /locus_tag="BSU_07480"
                     /old_locus_tag="BSU07480"
                     /label="yfmG gene"
     S_feature       complement(745457..747127)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_821232_822902_c"
                     /HighExp="H2O2, C30, Salt, Lbstat, dia15, LPhT, dia5,
                     Paraq, HiOs, Diami"
                     /AntisenseName="yfmG"
                     /AntisenseCor="-0.58045119682782798"
                     /AntisenseRegPval="-24.9"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA, SigA"
                     /TUshortPSig="0.998, 1"
                     /TUlongSig="SigA"
                     /TUlongPSig="0.996"
                     /label="S255"
     S_feature       746556..747049
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_822331_822824"
                     /HighExp="LoTm, T0.0H, T-1.40H, T-0.40H, T-2.40H, T-1.10H,
                     Pyr, T-3.40H, SMMPr, T3.30H"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig=1
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S256"
     promotor_-35    747037..747042
                     /Source="Nicolas_upshift_promotors"
                     /id="U568"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.982017982017982"
                     /psig="0.982017982017982"
                     /xcortree=758
                     /SigmaFactorBS="aaaagagtatctcgtatagaacataagaagaatgacgagttt
                     tttaAGATTAtcatcaattatgtgaGAATAAAATATTATAAGGGaaaatgaaggctgt
                     c"
                     /listShort="S257"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     S_feature       747051..750316
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_822826_826091"
                     /HighExp="LoTm, Pyr, B36, T3.30H, T2.0H, T-0.40H, T2.30H,
                     B60, T4.0H, T3.0H"
                     /AntisenseName="yfmE"
                     /AntisenseCor="-0.61640022790163695"
                     /AntisenseRegPval="-28.8"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigEF, SigA"
                     /TUshortPSig="0.982, 1"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S257"
     upshifts        747051
                     /Source="Nicolas_upshifts"
                     /id="U568"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.982017982017982"
                     /psig="0.982017982017982"
                     /xcortree=758
                     /SigmaFactorBS="aaaagagtatctcgtatagaacataagaagaatgacgagttt
                     tttaAGATTAtcatcaattatgtgaGAATAAAATATTATAAGGGaaaatgaaggctgt
                     c"
                     /listShort="S257"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-10    747058..747076
                     /Source="Nicolas_upshift_promotors"
                     /id="U568"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.982017982017982"
                     /psig="0.982017982017982"
                     /xcortree=758
                     /SigmaFactorBS="aaaagagtatctcgtatagaacataagaagaatgacgagttt
                     tttaAGATTAtcatcaattatgtgaGAATAAAATATTATAAGGGaaaatgaaggctgt
                     c"
                     /listShort="S257"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     CDS             complement(747128..747928)
                     /gene="fecF"
                     /locus_tag="BSU_07490"
                     /old_locus_tag="BSU07490"
                     /function="16.1: Circulate"
                     /experiment="publication(s) with functional evidences,
                     PMID:16672620, 22194458"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 16672620, 22194458;
                     Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="iron-dicitrate ABC transporter (ATP-binding
                     protein)"
                     /protein_id="NP_388630.1"
                     /db_xref="EnsemblGenomes-Gn:BSU07490"
                     /db_xref="EnsemblGenomes-Tr:CAB12578"
                     /db_xref="GOA:O34510"
                     /db_xref="InterPro:IPR003439"
                     /db_xref="InterPro:IPR003593"
                     /db_xref="InterPro:IPR017871"
                     /db_xref="InterPro:IPR027417"
                     /db_xref="SubtiList:BG12957"
                     /db_xref="UniProtKB/Swiss-Prot:O34510"
                     /translation="MGKLAADQLTLSYDSTVIIDGVDLKIEEGKITALIGANGCGKST
                     ILKSLARLMAPKSGTVLLEGKDIHRQPSKEVAKKLAILPQSPQAPEGLTVEELCYFGR
                     HPHKKLLSKHTQEDHDMVEWALEATGMIELKDRTLDALSGGQRQRAWISMALAQGTDL
                     LLLDEPTTYLDISHQIEVLELLKKLNRDHGRTVVMVLHDLNQAAQYADYLISVLDGKI
                     YNAGTPEDVFTQPFFREVFGLECCIMRSPIDQKPMCLPTGLCPKLRAK*"
                     /label="fecF CDS"
     gene            complement(747128..747928)
                     /gene="fecF"
                     /locus_tag="BSU_07490"
                     /old_locus_tag="BSU07490"
                     /label="fecF gene"
     CDS             complement(747941..748942)
                     /gene="fecE"
                     /locus_tag="BSU_07500"
                     /old_locus_tag="BSU07500"
                     /function="16.1: Circulate"
                     /experiment="publication(s) with functional evidences,
                     PMID:15849754, 16672620, 16850406, 22194458"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 15849754, 16672620,
                     16850406, 22194458; Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="iron-dicitrate ABC transporter (permease)"
                     /protein_id="NP_388631.1"
                     /db_xref="EnsemblGenomes-Gn:BSU07500"
                     /db_xref="EnsemblGenomes-Tr:CAB12579"
                     /db_xref="GOA:O34832"
                     /db_xref="InterPro:IPR000522"
                     /db_xref="InterPro:IPR035568"
                     /db_xref="SubtiList:BG12956"
                     /db_xref="UniProtKB/Swiss-Prot:O34832"
                     /translation="MKKTTRKQKRPLLAILILAVILIVLSVISIGIGALYISPDAVVT
                     NLLGLDHSFEFIIQQYRLPRIILAILAGAGLAAAGAILQGVIRNPLASPDVVGISKGS
                     GLAAMAVILIFPESPVYVLPFSAFAGAAIIAVLLLMIARKKSIQPSSLALSGIALGAV
                     CHAGMQYMMVKFPGDVNAALIWLTGSLWGRNWEEVKLLAPWLLILFPIVCILIPKLDL
                     MSLGDELAQGLGENANRLRFILIFTAVALAGSCVAVVGSIGFIGLLAPHIARRLTGEK
                     AKYLLPASALIGAIILLIADTLGRGIMPPVEIPAGILTAVIGAPYFLYLLKFEARKQ*
                     "
                     /label="fecE CDS"
     gene            complement(747941..748942)
                     /gene="fecE"
                     /locus_tag="BSU_07500"
                     /old_locus_tag="BSU07500"
                     /label="fecE gene"
     promotor_-10    complement(748528..748547)
                     /Source="Nicolas_upshift_promotors"
                     /id="U569"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.954045954045954"
                     /psig="0.998001998001998"
                     /xcortree=2068
                     /SigmaFactorBS="gagtcgccggtatacgtgcttccgttctccgCATTTGCCgga
                     gccgccattatTGCTGTACTATTATTAATGAtagcccgaaaaaagagcattcagccct
                     c"
                     /listShort="yfmF, S255"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(748540)
                     /Source="Nicolas_upshifts"
                     /id="U569"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.954045954045954"
                     /psig="0.998001998001998"
                     /xcortree=2068
                     /SigmaFactorBS="gagtcgccggtatacgtgcttccgttctccgCATTTGCCgga
                     gccgccattatTGCTGTACTATTATTAATGAtagcccgaaaaaagagcattcagccct
                     c"
                     /listShort="yfmF, S255"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(748562..748569)
                     /Source="Nicolas_upshift_promotors"
                     /id="U569"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.954045954045954"
                     /psig="0.998001998001998"
                     /xcortree=2068
                     /SigmaFactorBS="gagtcgccggtatacgtgcttccgttctccgCATTTGCCgga
                     gccgccattatTGCTGTACTATTATTAATGAtagcccgaaaaaagagcattcagccct
                     c"
                     /listShort="yfmF, S255"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             complement(748939..749940)
                     /gene="fecD"
                     /locus_tag="BSU_07510"
                     /old_locus_tag="BSU07510"
                     /function="16.1: Circulate"
                     /experiment="publication(s) with functional evidences,
                     PMID:12354229, 15849754, 16672620, 16850406, 22194458"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 12354229, 15849754,
                     16672620, 16850406, 22194458; Product type t :
                     transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="iron-dicitrate ABC transporter (permease)"
                     /protein_id="NP_388632.1"
                     /db_xref="EnsemblGenomes-Gn:BSU07510"
                     /db_xref="EnsemblGenomes-Tr:CAB12580"
                     /db_xref="GOA:O34933"
                     /db_xref="InterPro:IPR000522"
                     /db_xref="InterPro:IPR035568"
                     /db_xref="SubtiList:BG12955"
                     /db_xref="UniProtKB/Swiss-Prot:O34933"
                     /translation="MYHSAKRRSSSRLMMFIIALIIFIFGLGLNLSVGASDISIIDSL
                     KYLFVWDGSKEQLIISTLRLPRTLIGVFVGASLAVAGALMQAMTRNPLASPQIFGVNA
                     GASLFVVASLVILPASPYSSVIFAFAGAAAGGAIVYMIASSGGMTPVKLALSGMAVHL
                     FLSSMTQAIIILNESGEDVLYWMTGAIDGSNWQDVITIAPFSVIGIGLALVFSGSVSV
                     LGLGDETAKGLGQNMNGIRILISLIILILSGASVAVAGPIGFVGLLVPHIVRKLIGEH
                     YQYVLPFSALFGAILLVYADVLARWIAFPYESPVGIVTAIIGTPFFLYLARKGRNLK*
                     "
                     /label="fecD CDS"
     gene            complement(748939..749940)
                     /gene="fecD"
                     /locus_tag="BSU_07510"
                     /old_locus_tag="BSU07510"
                     /label="fecD gene"
     misc_feature    complement(750010..750029)
                     /Source="Nicolas_upshift_promotors"
                     /id="U570"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.664335664335664"
                     /psig="0.701298701298701"
                     /xcortree=1492
                     /SigmaFactorBS="acacttggacaagattcagaggcatcaagtctagtgaaacaa
                     gcgccaaagatgtgcttaaaAAAGTGTATAATAAATAGGAcaaatgagaagcgagggg
                     a"
                     /listShort="yfmD"
                     /GFF_Attribute="listLong"
                     /label="promotor_single_box"
                     /note="Geneious type: promotor_single_box"
     CDS             complement(750012..750959)
                     /gene="fecC"
                     /locus_tag="BSU_07520"
                     /old_locus_tag="BSU07520"
                     /function="16.1: Circulate"
                     /experiment="publication(s) with functional evidences,
                     PMID:12354229, 15849754, 16672620, 16850406, 22194458"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 12354229, 15849754,
                     16672620, 16850406, 22194458; Product type t :
                     transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="iron-dicitrate ABC transporter (binding
                     lipoprotein)"
                     /protein_id="NP_388633.1"
                     /db_xref="EnsemblGenomes-Gn:BSU07520"
                     /db_xref="EnsemblGenomes-Tr:CAB12581"
                     /db_xref="GOA:O34348"
                     /db_xref="InterPro:IPR002491"
                     /db_xref="SubtiList:BG12954"
                     /db_xref="UniProtKB/Swiss-Prot:O34348"
                     /translation="MRTYSNKLIAIMSVLLLACLIVSGCSSSQNNNGSGKSESKDSRV
                     IHDEEGKTTVSGTPKRVVVLELSFLDAVHNLGITPVGIADDNKKDMIKKLVGSSIDYT
                     SVGTRSEPNLEVISSLKPDLIIADAERHKNIYKQLKKIAPTIELKSREATYDETIDSF
                     TTIAKALNKEDEGKEKLAEHKKVINDLKAELPKDENRNIVLGVARADSFQLHTSSSYD
                     GEIFKMLGFTHAVKSDNAYQEVSLEQLSKIDPDILFISANEGKTIVDEWKTNPLWKNL
                     KAVKNGQVYDADRDTWTRFRGIKSSETSAKDVLKKVYNK*"
                     /label="fecC CDS"
     gene            complement(750012..750959)
                     /gene="fecC"
                     /locus_tag="BSU_07520"
                     /old_locus_tag="BSU07520"
                     /label="fecC gene"
     downshifts      complement(750031)
                     /Source="Nicolas_upshifts"
                     /id="D374"
                     /incds=0
                     /nref=41
                     /ntot=211
                     /MaxReadThrough="4.92983"
                     /MaxDrop="4.53674"
                     /score="-3.64310934"
                     /energy="-13.9"
                     /TU="U570,U573,U574"
                     /idTUdmin="U570"
                     /TUdmin="-198"
                     /isTUend="FALSE"
                     /label="downshifts"
     upshifts        complement(750031)
                     /Source="Nicolas_upshifts"
                     /id="U570"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.664335664335664"
                     /psig="0.701298701298701"
                     /xcortree=1492
                     /SigmaFactorBS="acacttggacaagattcagaggcatcaagtctagtgaaacaa
                     gcgccaaagatgtgcttaaaAAAGTGTATAATAAATAGGAcaaatgagaagcgagggg
                     a"
                     /listShort="yfmD"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    750286..750291
                     /Source="Nicolas_upshift_promotors"
                     /id="U571"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.997002997002997"
                     /psig="0.997002997002997"
                     /xcortree=1066
                     /SigmaFactorBS="atctgacttcacagcgtgtgtaaagcctAGCATTttaaagat
                     ttctccgTCATAGGATGATGATGTATgaagctggaaggaatccgctcttgcaacgccg
                     a"
                     /listShort="S258, S259"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    750307..750325
                     /Source="Nicolas_upshift_promotors"
                     /id="U571"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.997002997002997"
                     /psig="0.997002997002997"
                     /xcortree=1066
                     /SigmaFactorBS="atctgacttcacagcgtgtgtaaagcctAGCATTttaaagat
                     ttctccgTCATAGGATGATGATGTATgaagctggaaggaatccgctcttgcaacgccg
                     a"
                     /listShort="S258, S259"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     S_feature       750318..750943
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_826093_826718"
                     /HighExp="LoTm, B36, S5, S6, S4, S7, S8, S3, BT, B60"
                     /AntisenseName="yfmC"
                     /AntisenseCor="-0.52042999587715499"
                     /AntisenseRegPval="-19.3"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigEF, SigA"
                     /TUshortPSig="0.997, 1"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S258"
     upshifts        750318
                     /Source="Nicolas_upshifts"
                     /id="U571"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.997002997002997"
                     /psig="0.997002997002997"
                     /xcortree=1066
                     /SigmaFactorBS="atctgacttcacagcgtgtgtaaagcctAGCATTttaaagat
                     ttctccgTCATAGGATGATGATGTATgaagctggaaggaatccgctcttgcaacgccg
                     a"
                     /listShort="S258, S259"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     misc_feature    750939..750958
                     /Source="Nicolas_upshift_promotors"
                     /id="U572"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.905094905094905"
                     /psig="0.997002997002997"
                     /xcortree=1855
                     /SigmaFactorBS="acagccggatacaatgaggcaggcgagcaataaaacactcat
                     gatggcaatcaaCTTGTTAGAATAGGTGCGCAtgtcattcttccttttttcagattta
                     g"
                     /listShort="S259"
                     /GFF_Attribute="listLong"
                     /label="promotor_single_box"
                     /note="Geneious type: promotor_single_box"
     S_feature       750945..751476
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_826720_827251"
                     /HighExp="LoTm, B36, S5, S4, S7, S6, S8, B60, S3, BT"
                     /AntisenseName="yfmB"
                     /AntisenseCor="-6.4915194654100006E-2"
                     /AntisenseRegPval="-0.5"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA, SigEF, SigA"
                     /TUshortPSig="0.997, 0.997, 1"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S259"
     upshifts        750945
                     /Source="Nicolas_upshifts"
                     /id="U572"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.905094905094905"
                     /psig="0.997002997002997"
                     /xcortree=1855
                     /SigmaFactorBS="acagccggatacaatgaggcaggcgagcaataaaacactcat
                     gatggcaatcaaCTTGTTAGAATAGGTGCGCAtgtcattcttccttttttcagattta
                     g"
                     /listShort="S259"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-10    complement(751001..751020)
                     /Source="Nicolas_upshift_promotors"
                     /id="U573"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.645354645354645"
                     /psig=1
                     /xcortree=2102
                     /SigmaFactorBS="aaaacgcagctttctttactaaaaaaaTATTGACAtgataag
                     ccatgcTATTATAGTGTTACATGTGAtaatgattctcattactaaatctgaaaaaagg
                     a"
                     /listShort="yfmC, yfmD, yfmE, yfmF, S255"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(751008)
                     /Source="Nicolas_upshifts"
                     /id="U573"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.645354645354645"
                     /psig=1
                     /xcortree=2102
                     /SigmaFactorBS="aaaacgcagctttctttactaaaaaaaTATTGACAtgataag
                     ccatgcTATTATAGTGTTACATGTGAtaatgattctcattactaaatctgaaaaaagg
                     a"
                     /listShort="yfmC, yfmD, yfmE, yfmF, S255"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(751034..751041)
                     /Source="Nicolas_upshift_promotors"
                     /id="U573"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.645354645354645"
                     /psig=1
                     /xcortree=2102
                     /SigmaFactorBS="aaaacgcagctttctttactaaaaaaaTATTGACAtgataag
                     ccatgcTATTATAGTGTTACATGTGAtaatgattctcattactaaatctgaaaaaagg
                     a"
                     /listShort="yfmC, yfmD, yfmE, yfmF, S255"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             complement(751068..751436)
                     /gene="yfmB"
                     /locus_tag="BSU_07530"
                     /old_locus_tag="BSU07530"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms; PubMedId: 25651892"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved hypothetical protein"
                     /protein_id="NP_388634.1"
                     /db_xref="EnsemblGenomes-Gn:BSU07530"
                     /db_xref="EnsemblGenomes-Tr:CAB12582"
                     /db_xref="InterPro:IPR021579"
                     /db_xref="PDB:2EUC"
                     /db_xref="SubtiList:BG12953"
                     /db_xref="UniProtKB/Swiss-Prot:O34626"
                     /translation="MQYFSPEQQYNAWIVSDLVKQIFHKRAGCSPGIHELAVFAEEHF
                     HIDIDFVFSIIMNIGDIEFALTDEIEKKLSGYLSTLLPYVTADMFETSKANAHAFLSR
                     RHGNAAYHLFVSDDAFMRKQ*"
                     /label="yfmB CDS"
     gene            complement(751068..751436)
                     /gene="yfmB"
                     /locus_tag="BSU_07530"
                     /old_locus_tag="BSU07530"
                     /label="yfmB gene"
     S_feature       complement(751437..751549)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_827212_827324_c"
                     /HighExp="Etha, BC, Sw, M9-stat, T3.30H, T1.30H, T3.0H,
                     T5.0H, T2.30H, T2.0H"
                     /AntisenseName="yfmA"
                     /AntisenseCor="5.8024036419347599E-2"
                     /AntisenseRegPval="-0.5"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.996"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S260"
     promotor_-10    complement(751538..751557)
                     /Source="Nicolas_upshift_promotors"
                     /id="U574"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.967032967032967"
                     /psig="0.996003996003996"
                     /xcortree=128
                     /SigmaFactorBS="gaacattgaagagaaaaacaggaggaatggtagTAGCTATTt
                     gttttccgtcCATGGTAAAGTGATAGGAACgggacctattttcagaaaaatcaaaatt
                     a"
                     /listShort="S260, yfmB, yfmC, yfmD"
                     /listLong="yfmE, yfmF, S255"
                     /label="promotor_-10"
     upshifts        complement(751549)
                     /Source="Nicolas_upshifts"
                     /id="U574"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.967032967032967"
                     /psig="0.996003996003996"
                     /xcortree=128
                     /SigmaFactorBS="gaacattgaagagaaaaacaggaggaatggtagTAGCTATTt
                     gttttccgtcCATGGTAAAGTGATAGGAACgggacctattttcagaaaaatcaaaatt
                     a"
                     /listShort="S260, yfmB, yfmC, yfmD"
                     /listLong="yfmE, yfmF, S255"
                     /label="upshifts"
     promotor_-35    complement(751569..751576)
                     /Source="Nicolas_upshift_promotors"
                     /id="U574"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.967032967032967"
                     /psig="0.996003996003996"
                     /xcortree=128
                     /SigmaFactorBS="gaacattgaagagaaaaacaggaggaatggtagTAGCTATTt
                     gttttccgtcCATGGTAAAGTGATAGGAACgggacctattttcagaaaaatcaaaatt
                     a"
                     /listShort="S260, yfmB, yfmC, yfmD"
                     /listLong="yfmE, yfmF, S255"
                     /label="promotor_-35"
     promotor_-35    751617..751623
                     /Source="Nicolas_upshift_promotors"
                     /id="U575"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp=1
                     /psig=1
                     /xcortree=221
                     /SigmaFactorBS="ctaccattcctcctgtttttctcttcaatgttctggaatcTG
                     TTTCAggtacagacgatcGGGTATGAAAGAAATATAGaaaacatgaaggaggaatatc
                     g"
                     /listShort="yflT, S261, pel, yflS"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    751637..751655
                     /Source="Nicolas_upshift_promotors"
                     /id="U575"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp=1
                     /psig=1
                     /xcortree=221
                     /SigmaFactorBS="ctaccattcctcctgtttttctcttcaatgttctggaatcTG
                     TTTCAggtacagacgatcGGGTATGAAAGAAATATAGaaaacatgaaggaggaatatc
                     g"
                     /listShort="yflT, S261, pel, yflS"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        751637
                     /Source="Nicolas_upshifts"
                     /id="U575"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp=1
                     /psig=1
                     /xcortree=221
                     /SigmaFactorBS="ctaccattcctcctgtttttctcttcaatgttctggaatcTG
                     TTTCAggtacagacgatcGGGTATGAAAGAAATATAGaaaacatgaaggaggaatatc
                     g"
                     /listShort="yflT, S261, pel, yflS"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             751680..752027
                     /gene="yflT"
                     /locus_tag="BSU_07550"
                     /old_locus_tag="BSU07550"
                     /function="16.8: Protect"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 1c: Function from experimental evidences
                     in the studied genus; PubMedId: 12089032; Product type e :
                     enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="heat stress induced protein"
                     /protein_id="NP_388636.1"
                     /db_xref="EnsemblGenomes-Gn:BSU07550"
                     /db_xref="EnsemblGenomes-Tr:CAB12584"
                     /db_xref="InterPro:IPR025889"
                     /db_xref="SubtiList:BG19020"
                     /db_xref="UniProtKB/Swiss-Prot:P80241"
                     /translation="MKPVVKEYTNDEQLMKDVEELQKMGVAKEDVYVLAHDDDRTERL
                     ADNTNANTIGAKETGFKHAVGNIFNKKGDELRNKIHEIGFSEDEAAQFEKRLDEGKVL
                     LFVTDNEKVKAWA*"
                     /label="yflT CDS"
     gene            751680..752027
                     /gene="yflT"
                     /locus_tag="BSU_07550"
                     /old_locus_tag="BSU07550"
                     /label="yflT gene"
     downshifts      complement(751681)
                     /Source="Nicolas_upshifts"
                     /id="D375"
                     /incds=0
                     /nref=6
                     /ntot=28
                     /MaxReadThrough="1.00082"
                     /MaxDrop="4.87687"
                     /score="-3.31058364"
                     /energy="-3.6"
                     /TU="NA"
                     /idTUdmin="U570"
                     /TUdmin="-1848"
                     /isTUend="FALSE"
                     /label="downshifts"
     downshifts      752023
                     /Source="Nicolas_upshifts"
                     /id="D376"
                     /incds=0
                     /nref=56
                     /ntot=197
                     /MaxReadThrough="6.41566"
                     /MaxDrop="7.61596"
                     /score="-1.88723414"
                     /energy="-5.6"
                     /TU="U575"
                     /idTUdmin="U567"
                     /TUdmin=0
                     /isTUend="TRUE"
                     /label="downshifts"
     S_feature       752068..752148
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_827843_827923"
                     /HighExp="Etha, Salt, B36, LoTm, Heat, B60, M9-stat, S8,
                     C30, LPhT"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigB"
                     /TUshortPSig=1
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S261"
     misc_feature    752149..752168
                     /Source="Nicolas_upshift_promotors"
                     /id="U576"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.576423576423576"
                     /psig="0.972027972027972"
                     /xcortree=3242
                     /SigmaFactorBS="gattttgcagaatgccgcaataggatagcggaacattttcgg
                     ttctgaatgtccctcaaTTTGCTATTATATTTTTGTGataaattggaataaaatctca
                     c"
                     /listShort="pel"
                     /GFF_Attribute="listLong"
                     /label="promotor_single_box"
                     /note="Geneious type: promotor_single_box"
     upshifts        752150
                     /Source="Nicolas_upshifts"
                     /id="U576"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.576423576423576"
                     /psig="0.972027972027972"
                     /xcortree=3242
                     /SigmaFactorBS="gattttgcagaatgccgcaataggatagcggaacattttcgg
                     ttctgaatgtccctcaaTTTGCTATTATATTTTTGTGataaattggaataaaatctca
                     c"
                     /listShort="pel"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             752218..753480
                     /gene="pelA"
                     /locus_tag="BSU_07560"
                     /old_locus_tag="BSU07560"
                     /EC_number="4.2.2.2"
                     /function="16.11: Scavenge (Catabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:8262178, 12823818, 27447541"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 8262178, 12823818,
                     27447541; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="pectate lyase"
                     /protein_id="NP_388637.1"
                     /db_xref="EnsemblGenomes-Gn:BSU07560"
                     /db_xref="EnsemblGenomes-Tr:CAB12585"
                     /db_xref="GOA:P39116"
                     /db_xref="InterPro:IPR002022"
                     /db_xref="InterPro:IPR011050"
                     /db_xref="InterPro:IPR012334"
                     /db_xref="PDB:1BN8"
                     /db_xref="PDB:2BSP"
                     /db_xref="PDB:2NZM"
                     /db_xref="PDB:2O04"
                     /db_xref="PDB:2O0V"
                     /db_xref="PDB:2O0W"
                     /db_xref="PDB:2O17"
                     /db_xref="PDB:2O1D"
                     /db_xref="PDB:3KRG"
                     /db_xref="PDB:5AMV"
                     /db_xref="SubtiList:BG10840"
                     /db_xref="UniProtKB/Swiss-Prot:P39116"
                     /translation="MKKVMLATALFLGLTPAGANAADLGHQTLGSNDGWGAYSTGTTG
                     GSKASSSNVYTVSNRNQLVSALGKETNTTPKIIYIKGTIDMNVDDNLKPLGLNDYKDP
                     EYDLDKYLKAYDPSTWGKKEPSGTQEEARARSQKNQKARVMVDIPANTTIVGSGTNAK
                     VVGGNFQIKSDNVIIRNIEFQDAYDYFPQWDPTDGSSGNWNSQYDNITINGGTHIWID
                     HCTFNDGSRPDSTSPKYYGRKYQHHDGQTDASNGANYITMSYNYYHDHDKSSIFGSSD
                     SKTSDDGKLKITLHHNRYKNIVQRAPRVRFGQVHVYNNYYEGSTSSSSYPFSYAWGIG
                     KSSKIYAQNNVIDVPGLSAAKTISVFSGGTALYDSGTLLNGTQINASAANGLSSSVGW
                     TPSLHGSIDASANVKSNVINQAGAGKLN*"
                     /label="pelA CDS"
     gene            752218..753480
                     /gene="pelA"
                     /locus_tag="BSU_07560"
                     /old_locus_tag="BSU07560"
                     /label="pelA gene"
     downshifts      753475
                     /Source="Nicolas_upshifts"
                     /id="D377"
                     /incds=0
                     /nref=139
                     /ntot=203
                     /MaxReadThrough="3.61256"
                     /MaxDrop="5.92635"
                     /score="1.82127533"
                     /energy="-8.2"
                     /TU="U575,U576"
                     /idTUdmin="U576"
                     /TUdmin="-176"
                     /isTUend="FALSE"
                     /label="downshifts"
     promotor_-35    753533..753536
                     /Source="Nicolas_upshift_promotors"
                     /id="U577"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.879120879120879"
                     /psig="0.984015984015984"
                     /xcortree=1756
                     /SigmaFactorBS="gggtgctaacctttgtgttttttaattaattaaaATGTttat
                     taacttagttAAGGAGTAGAATGGAAAAGGggatcggaaaacaagtatataggaggag
                     a"
                     /listShort="yflS"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    753551..753570
                     /Source="Nicolas_upshift_promotors"
                     /id="U577"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.879120879120879"
                     /psig="0.984015984015984"
                     /xcortree=1756
                     /SigmaFactorBS="gggtgctaacctttgtgttttttaattaattaaaATGTttat
                     taacttagttAAGGAGTAGAATGGAAAAGGggatcggaaaacaagtatataggaggag
                     a"
                     /listShort="yflS"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        753559
                     /Source="Nicolas_upshifts"
                     /id="U577"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.879120879120879"
                     /psig="0.984015984015984"
                     /xcortree=1756
                     /SigmaFactorBS="gggtgctaacctttgtgttttttaattaattaaaATGTttat
                     taacttagttAAGGAGTAGAATGGAAAAGGggatcggaaaacaagtatataggaggag
                     a"
                     /listShort="yflS"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             753607..755043
                     /gene="maeS"
                     /locus_tag="BSU_07570"
                     /old_locus_tag="BSU07570"
                     /function="16.1: Circulate"
                     /experiment="publication(s) with functional evidences,
                     PMID:12949159, 15849754, 16850406, 25651892, 28436820"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 12949159, 15849754,
                     16850406, 25651892, 28436820; Product type t :
                     transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="malate (2-oxoglutarate) transporter"
                     /protein_id="NP_388638.1"
                     /db_xref="EnsemblGenomes-Gn:BSU07570"
                     /db_xref="EnsemblGenomes-Tr:CAB12586"
                     /db_xref="GOA:O34726"
                     /db_xref="InterPro:IPR001898"
                     /db_xref="InterPro:IPR030676"
                     /db_xref="SubtiList:BG12951"
                     /db_xref="UniProtKB/Swiss-Prot:O34726"
                     /translation="MASEKDAGKQSAVKLVPLLITVAVGLIIWFIPAPSGLEPKAWHL
                     FAIFVATIIGFISKPLPMGAIAIFALAVTALTGTLSIEDTLSGFGNKTIWLIVIAFFI
                     SRGFIKTGLGARISYVFVQKFGKKTLGLSYSLLFSDLILSPAIPSNTARAGGIIFPII
                     RSLSETFGSSPANGTERKIGAFLLKTGFQGNLITSAMFLTAMAANPLIAKLAHDVAGV
                     DLTWTSWAIAAIVPGLVSLIITPLVIYKLYPPEIKETPDAAKIATEKLKEMGPFKKSE
                     LSMVIVFLLVLVLWIFGGSFNIDATTTALIGLAVLLLSQVLTWDDIKKEQGAWDTLTW
                     FAALVMLANFLNELGMVSWFSNAMKSSVSGFSWIVAFIILIVVYYYSHYFFASATAHI
                     SAMYSAFLAVVVAAGAPPLLAALSLAFISNLFGSTTHYGSGAAPVFFGAGYIPQGKWW
                     SIGFILSIVHIIVWLVIGGLWWKVLGIW*"
                     /label="maeS CDS"
     gene            753607..755043
                     /gene="maeS"
                     /locus_tag="BSU_07570"
                     /old_locus_tag="BSU07570"
                     /label="maeS gene"
     downshifts      755035
                     /Source="Nicolas_upshifts"
                     /id="D378"
                     /incds=0
                     /nref=56
                     /ntot=132
                     /MaxReadThrough="2.39993"
                     /MaxDrop="5.36125"
                     /score="40.3051497"
                     /energy="-9.7"
                     /TU="NA"
                     /idTUdmin="U577"
                     /TUdmin="-2"
                     /isTUend="TRUE"
                     /label="downshifts"
     misc_feature    755134..755153
                     /Source="Nicolas_upshift_promotors"
                     /id="U578"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.997002997002997"
                     /psig=1
                     /xcortree=2939
                     /SigmaFactorBS="tccttcgtaagaaaatggattttgaaaaatgagaaaattccc
                     tgtgaaaAATGGTATGATCTAGGTAGAaaggacggctggtgctgtggtgaaaaagcgg
                     t"
                     /listShort="citS, citT, yflP"
                     /GFF_Attribute="listLong"
                     /label="promotor_single_box"
                     /note="Geneious type: promotor_single_box"
     upshifts        755145
                     /Source="Nicolas_upshifts"
                     /id="U578"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.997002997002997"
                     /psig=1
                     /xcortree=2939
                     /SigmaFactorBS="tccttcgtaagaaaatggattttgaaaaatgagaaaattccc
                     tgtgaaaAATGGTATGATCTAGGTAGAaaggacggctggtgctgtggtgaaaaagcgg
                     t"
                     /listShort="citS, citT, yflP"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             755170..756798
                     /gene="citS"
                     /locus_tag="BSU_07580"
                     /old_locus_tag="BSU07580"
                     /function="16.12: Sense"
                     /experiment="publication(s) with functional evidences,
                     PMID:10972810, 11717295, 12949159, 16842348"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 10972810, 11717295,
                     12949159, 16842348; Product type rc: receptor"
                     /codon_start=1
                     /transl_table=11
                     /product="two-component sensor histidine kinase"
                     /protein_id="NP_388639.1"
                     /db_xref="EnsemblGenomes-Gn:BSU07580"
                     /db_xref="EnsemblGenomes-Tr:CAB12587"
                     /db_xref="GOA:O34427"
                     /db_xref="InterPro:IPR003594"
                     /db_xref="InterPro:IPR004358"
                     /db_xref="InterPro:IPR005467"
                     /db_xref="InterPro:IPR016120"
                     /db_xref="InterPro:IPR029151"
                     /db_xref="InterPro:IPR035965"
                     /db_xref="InterPro:IPR036890"
                     /db_xref="SubtiList:BG12576"
                     /db_xref="UniProtKB/Swiss-Prot:O34427"
                     /translation="MVKKRFHFSLQTKIMGLIAALLVFVIGVLTITLAVQHTQGERRQ
                     AEQLAVQTARTISYMPPVKELIERKDGHAAQTQEVIEQMKEQTGAFAIYVLNEKGDIR
                     SASGKSGLKKLERSREILFGGSHVSETKADGRRVIRGSAPIIKEQKGYSQVIGSVSVD
                     FLQTETEQSIKKHLRNLSVIAVLVLLLGFIGAAVLAKSIRKDTLGLEPHEIAALYRER
                     NAMLFAIREGIIATNREGVVTMMNVSAAEMLKLPEPVIHLPIDDVMPGAGLMSVLEKG
                     EMLPNQEVSVNDQVFIINTKVMNQGGQAYGIVVSFREKTELKKLIDTLTEVRKYSEDL
                     RAQTHEFSNKLYAILGLLELGEYDEAIDLIKEEYAIQNEQHDLLFHNIHSQQVQAILL
                     GKISKASEKKVKLVIDENSSLAPLPAHIGLSHLITIIGNLIDNAFEAVAEQSVKEVLF
                     FITDMGHDIVIEVSDTGPGVPPEKIEAVFERGYSSKGMRRGYGLANVKDSVRELGGWI
                     ELANQKTGGAVFTVFIPKEKQRGNPFDSHRDCGG*"
                     /label="citS CDS"
     gene            755170..756798
                     /gene="citS"
                     /locus_tag="BSU_07580"
                     /old_locus_tag="BSU07580"
                     /label="citS gene"
     CDS             756770..757450
                     /gene="citT"
                     /locus_tag="BSU_07590"
                     /old_locus_tag="BSU07590"
                     /function="16.3: Control"
                     /experiment="publication(s) with functional evidences,
                     PMID:10972810, 11717295, 12949159, 16842348"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 10972810, 11717295,
                     12949159, 16842348; Product type r: regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="two-component response regulator"
                     /protein_id="NP_388640.1"
                     /db_xref="EnsemblGenomes-Gn:BSU07590"
                     /db_xref="EnsemblGenomes-Tr:CAB12588"
                     /db_xref="GOA:O34534"
                     /db_xref="InterPro:IPR001789"
                     /db_xref="InterPro:IPR011006"
                     /db_xref="InterPro:IPR013196"
                     /db_xref="InterPro:IPR024187"
                     /db_xref="InterPro:IPR028141"
                     /db_xref="InterPro:IPR036388"
                     /db_xref="SubtiList:BG12577"
                     /db_xref="UniProtKB/Swiss-Prot:O34534"
                     /translation="MIHIAIAEDDFRVAQIHERLIKQLDGFKIIGKAANAKETLALLK
                     EHKADLLLLDIYMPDELGTALIPDIRSRFPEVDIMIITAATETRHLQEALRAGIAHYL
                     IKPVTADKFRQVLLQYKEKRKLLMSQPEVSQSMIDHIFGNGVKTALPAEDLPTGINSI
                     TLRKIKEALQTASEGLTAEELGEKMGASRTTARRYAEYLVSKEEARAELEYGIIGRPE
                     RKYYLAAD*"
                     /label="citT CDS"
     gene            756770..757450
                     /gene="citT"
                     /locus_tag="BSU_07590"
                     /old_locus_tag="BSU07590"
                     /label="citT gene"
     CDS             757453..758412
                     /gene="yflP"
                     /locus_tag="BSU_07600"
                     /old_locus_tag="BSU07600"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 11029430; Product type
                     t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="putative tricarboxylate transporter component"
                     /protein_id="NP_388641.2"
                     /db_xref="EnsemblGenomes-Gn:BSU07600"
                     /db_xref="EnsemblGenomes-Tr:CAB12589"
                     /db_xref="GOA:O34439"
                     /db_xref="InterPro:IPR005064"
                     /db_xref="SubtiList:BG12950"
                     /db_xref="UniProtKB/Swiss-Prot:O34439"
                     /translation="MKKSIILLNILLIFMQGDIRQAAAPRLPDGPIEIVVPAEPSGGW
                     DVTAQAIQSVLRQKQIVKDDVHIVYKSGGGGEKGWKYVNKSSKQTISMTSSLILSNDL
                     LGQSKLKMSDFTPLAILSKEWQTVALPKGSALTNGKDVLNEINMHPGKVRIGFAPGFG
                     NDDQLSFVRAADMYGIDPFDIQFSQYDSSEQLIQALIRHEIEAASMTLSEAKPYERNG
                     DITLAAVTSDKRLPGFPNVPTWKEQGIPFVFSHWRGILGPKNMSEEEISYWDQALKKV
                     TSSPEWKRKINEQDWESFYLNSRETKRFLEEQSAFYQSIMTGN*"
                     /label="yflP CDS"
     gene            757453..758412
                     /gene="yflP"
                     /locus_tag="BSU_07600"
                     /old_locus_tag="BSU07600"
                     /label="yflP gene"
     downshifts      758381
                     /Source="Nicolas_upshifts"
                     /id="D379"
                     /incds=0
                     /nref=76
                     /ntot=211
                     /MaxReadThrough="1.1681"
                     /MaxDrop="6.31244"
                     /score="10.4510496"
                     /energy="-6.5"
                     /TU="NA"
                     /idTUdmin="U578"
                     /TUdmin=0
                     /isTUend="TRUE"
                     /label="downshifts"
     promotor_-35    758504..758511
                     /Source="Nicolas_upshift_promotors"
                     /id="U579"
                     /multdbtbs="SigA"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.606393606393606"
                     /psig="0.96003996003996"
                     /xcortree=565
                     /SigmaFactorBS="aaaaaattaaaaatacaaaaaaaccaaatTATTTACTtgcgg
                     ttggtttTCCCATACGATGGCAAAAAGgcaagacaaaaaggggagtaagggagaaaaa
                     a"
                     /listShort="S262, citM"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    758524..758543
                     /Source="Nicolas_upshift_promotors"
                     /id="U579"
                     /multdbtbs="SigA"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.606393606393606"
                     /psig="0.96003996003996"
                     /xcortree=565
                     /SigmaFactorBS="aaaaaattaaaaatacaaaaaaaccaaatTATTTACTtgcgg
                     ttggtttTCCCATACGATGGCAAAAAGgcaagacaaaaaggggagtaagggagaaaaa
                     a"
                     /listShort="S262, citM"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     S_feature       758535..758607
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_834310_834382"
                     /HighExp="M9-stat, SMMPr, SMM, T0.0H, LoTm, T1.0H, Pyr,
                     T1.30H, Cold, T2.0H"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.96"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S262"
     upshifts        758535
                     /Source="Nicolas_upshifts"
                     /id="U579"
                     /multdbtbs="SigA"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.606393606393606"
                     /psig="0.96003996003996"
                     /xcortree=565
                     /SigmaFactorBS="aaaaaattaaaaatacaaaaaaaccaaatTATTTACTtgcgg
                     ttggtttTCCCATACGATGGCAAAAAGgcaagacaaaaaggggagtaagggagaaaaa
                     a"
                     /listShort="S262, citM"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             758608..759909
                     /gene="citM"
                     /locus_tag="BSU_07610"
                     /old_locus_tag="BSU07610"
                     /function="16.1: Circulate"
                     /experiment="publication(s) with functional evidences,
                     PMID:12427932, 12533460, 12906362, 12949159, 15849754,
                     16842348, 16850406, 24415722, 22720735"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 12427932, 12533460,
                     12906362, 12949159, 15849754, 16842348, 16850406,
                     24415722, 22720735; Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="transporter of divalent metal ions/citrate
                     complexes"
                     /protein_id="NP_388642.1"
                     /db_xref="EnsemblGenomes-Gn:BSU07610"
                     /db_xref="EnsemblGenomes-Tr:CAB12590"
                     /db_xref="GOA:P55069"
                     /db_xref="InterPro:IPR004680"
                     /db_xref="InterPro:IPR014738"
                     /db_xref="SubtiList:BG11832"
                     /db_xref="UniProtKB/Swiss-Prot:P55069"
                     /translation="MLAILGFLMMLVFMALIMTKRLSVLTALVLTPIVFALIAGFGFT
                     EVGDMMISGIQQVAPTAVMIMFAILYFGIMIDTGLFDPMVGKILSMVKGDPLKIVVGT
                     AVLTMLVALDGDGSTTYMITTSAMLPLYLLLGIRPIILAGIAGVGMGIMNTIPWGGAT
                     PRAASALGVDPAELTGPMIPVIASGMLCMVAVAYVLGKAERKRLGVIELKQPANANEP
                     AAAVEDEWKRPKLWWFNLLLTLSLIGCLVSGKVSLTVLFVIAFCIALIVNYPNLEHQR
                     QRIAAHSSNVLAIGSMIFAAGVFTGILTGTKMVDEMAISLVSMIPEQMGGLIPAIVAL
                     TSGIFTFLMPNDAYFYGVLPILSETAVAYGVDKVEIARASIIGQPIHMLSPLVPSTHL
                     LVGLVGVSIDDHQKFALKWAVLAVIVMTAIALLIGAISISV*"
                     /label="citM CDS"
     gene            758608..759909
                     /gene="citM"
                     /locus_tag="BSU_07610"
                     /old_locus_tag="BSU07610"
                     /label="citM gene"
     promotor_-35    759906..759912
                     /Source="Nicolas_upshift_promotors"
                     /id="U580"
                     /multdbtbs="-"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp="0.999000999001"
                     /psig="0.999000999001"
                     /xcortree=920
                     /SigmaFactorBS="ggctatcgctctattgatcggtgcgatctctatttccgtATG
                     ATAAttcaggcgtaatgACACACACTAACggcatacaacattccggaggtgtcattat
                     g"
                     /listShort="yflN"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    759926..759937
                     /Source="Nicolas_upshift_promotors"
                     /id="U580"
                     /multdbtbs="-"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp="0.999000999001"
                     /psig="0.999000999001"
                     /xcortree=920
                     /SigmaFactorBS="ggctatcgctctattgatcggtgcgatctctatttccgtATG
                     ATAAttcaggcgtaatgACACACACTAACggcatacaacattccggaggtgtcattat
                     g"
                     /listShort="yflN"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        759927
                     /Source="Nicolas_upshifts"
                     /id="U580"
                     /multdbtbs="-"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp="0.999000999001"
                     /psig="0.999000999001"
                     /xcortree=920
                     /SigmaFactorBS="ggctatcgctctattgatcggtgcgatctctatttccgtATG
                     ATAAttcaggcgtaatgACACACACTAACggcatacaacattccggaggtgtcattat
                     g"
                     /listShort="yflN"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             759965..760759
                     /gene="yflN"
                     /locus_tag="BSU_07620"
                     /old_locus_tag="BSU07620"
                     /EC_number="3.-.-.-"
                     /function="16.11: Scavenge (Catabolism)"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 10972810, 22720735;
                     Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative metal-dependent hydrolase"
                     /protein_id="NP_388643.1"
                     /db_xref="EnsemblGenomes-Gn:BSU07620"
                     /db_xref="EnsemblGenomes-Tr:CAB12591"
                     /db_xref="GOA:O34409"
                     /db_xref="InterPro:IPR001279"
                     /db_xref="InterPro:IPR036866"
                     /db_xref="SubtiList:BG12949"
                     /db_xref="UniProtKB/Swiss-Prot:O34409"
                     /translation="MSDPYMPLTSVRSGAGFEAAKGVHGLTVQIANVYFIQLPSEPHS
                     FVLIDAGMPQSAGVIVNEAKQRFGEGFQLKAIILTHGHFDHIGAIEEILEHWDVPVYI
                     HSREMPYVTGKEDYPPARPDSKSGLVAKLSPLFPRHSIDISSHVQALPEDGSVPFLDE
                     WMWIATPGHTPGHISLFRDDGRVLVAGDAVITVEQEKMADVLIQKQELHGPPAYFTPD
                     TETAAESILKLAGLEPEALLTGHGIPMTGKNFRSDLTELANRLSSI*"
                     /label="yflN CDS"
     gene            759965..760759
                     /gene="yflN"
                     /locus_tag="BSU_07620"
                     /old_locus_tag="BSU07620"
                     /label="yflN gene"
     downshifts      760735
                     /Source="Nicolas_upshifts"
                     /id="D380"
                     /incds=0
                     /nref=2
                     /ntot=25
                     /MaxReadThrough="0.0114999999999998"
                     /MaxDrop="3.05232"
                     /score="38.3109333"
                     /energy="-11.8"
                     /TU="NA"
                     /idTUdmin="U580"
                     /TUdmin=132
                     /isTUend="FALSE"
                     /label="downshifts"
     promotor_-35    760814..760817
                     /Source="Nicolas_upshift_promotors"
                     /id="U581"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.509490509490509"
                     /psig="0.995004995004995"
                     /xcortree=2378
                     /SigmaFactorBS="attgttttccaggaagttgcagaaaaatcATTTgtcttgccg
                     cttaaAAACGATACAATGAAAAGCAtgaagtgatgtgaaggggagagtttgttggaag
                     a"
                     /listShort="nosA, S263, yflK"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    760832..760851
                     /Source="Nicolas_upshift_promotors"
                     /id="U581"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.509490509490509"
                     /psig="0.995004995004995"
                     /xcortree=2378
                     /SigmaFactorBS="attgttttccaggaagttgcagaaaaatcATTTgtcttgccg
                     cttaaAAACGATACAATGAAAAGCAtgaagtgatgtgaaggggagagtttgttggaag
                     a"
                     /listShort="nosA, S263, yflK"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        760845
                     /Source="Nicolas_upshifts"
                     /id="U581"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.509490509490509"
                     /psig="0.995004995004995"
                     /xcortree=2378
                     /SigmaFactorBS="attgttttccaggaagttgcagaaaaatcATTTgtcttgccg
                     cttaaAAACGATACAATGAAAAGCAtgaagtgatgtgaaggggagagtttgttggaag
                     a"
                     /listShort="nosA, S263, yflK"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             760878..761969
                     /gene="nosA"
                     /locus_tag="BSU_07630"
                     /old_locus_tag="BSU07630"
                     /EC_number="1.14.13.39"
                     /function="16.8: Protect"
                     /experiment="publication(s) with functional evidences,
                     PMID:11856757, 12220171, 16172391, 25643072, 25826316,
                     26062720"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 11856757, 12220171,
                     16172391, 25643072, 25826316, 26062720; Product type e :
                     enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="nitric-oxide synthase"
                     /protein_id="NP_388644.2"
                     /db_xref="EnsemblGenomes-Gn:BSU07630"
                     /db_xref="EnsemblGenomes-Tr:CAB12592"
                     /db_xref="GOA:O34453"
                     /db_xref="InterPro:IPR004030"
                     /db_xref="InterPro:IPR017142"
                     /db_xref="InterPro:IPR036119"
                     /db_xref="PDB:1M7V"
                     /db_xref="PDB:1M7Z"
                     /db_xref="PDB:2AMO"
                     /db_xref="PDB:2AN0"
                     /db_xref="PDB:2AN2"
                     /db_xref="PDB:2FBZ"
                     /db_xref="PDB:2FC1"
                     /db_xref="PDB:2FC2"
                     /db_xref="PDB:4D3I"
                     /db_xref="PDB:4D3J"
                     /db_xref="PDB:4D3K"
                     /db_xref="PDB:4D3M"
                     /db_xref="PDB:4D3N"
                     /db_xref="PDB:4D3O"
                     /db_xref="PDB:4D3T"
                     /db_xref="PDB:4D3U"
                     /db_xref="PDB:4D3V"
                     /db_xref="PDB:4D7H"
                     /db_xref="PDB:4D7I"
                     /db_xref="PDB:4D7J"
                     /db_xref="PDB:4LWA"
                     /db_xref="PDB:4LWB"
                     /db_xref="PDB:4UG5"
                     /db_xref="PDB:4UG6"
                     /db_xref="PDB:4UG7"
                     /db_xref="PDB:4UG8"
                     /db_xref="PDB:4UG9"
                     /db_xref="PDB:4UGA"
                     /db_xref="PDB:4UGB"
                     /db_xref="PDB:4UGC"
                     /db_xref="PDB:4UGD"
                     /db_xref="PDB:4UGE"
                     /db_xref="PDB:4UGF"
                     /db_xref="PDB:4UGG"
                     /db_xref="PDB:4UGH"
                     /db_xref="PDB:4UGI"
                     /db_xref="PDB:4UGJ"
                     /db_xref="PDB:4UGK"
                     /db_xref="PDB:4UGL"
                     /db_xref="PDB:4UGM"
                     /db_xref="PDB:4UGN"
                     /db_xref="PDB:4UGO"
                     /db_xref="PDB:4UGP"
                     /db_xref="PDB:4UGQ"
                     /db_xref="PDB:4UGR"
                     /db_xref="PDB:4UGS"
                     /db_xref="PDB:4UGT"
                     /db_xref="PDB:4UGU"
                     /db_xref="PDB:4UGV"
                     /db_xref="PDB:4UGW"
                     /db_xref="PDB:4UGX"
                     /db_xref="PDB:4UGY"
                     /db_xref="PDB:4UQR"
                     /db_xref="PDB:4UQS"
                     /db_xref="PDB:5G65"
                     /db_xref="PDB:5G66"
                     /db_xref="PDB:5G67"
                     /db_xref="PDB:5G68"
                     /db_xref="PDB:5G69"
                     /db_xref="PDB:5G6A"
                     /db_xref="PDB:5G6B"
                     /db_xref="PDB:5G6C"
                     /db_xref="PDB:5G6D"
                     /db_xref="PDB:5G6E"
                     /db_xref="PDB:5G6F"
                     /db_xref="PDB:5G6G"
                     /db_xref="PDB:5G6H"
                     /db_xref="PDB:5G6I"
                     /db_xref="PDB:5G6J"
                     /db_xref="PDB:5G6K"
                     /db_xref="PDB:5G6L"
                     /db_xref="PDB:5G6M"
                     /db_xref="PDB:5G6N"
                     /db_xref="PDB:5G6O"
                     /db_xref="PDB:5G6P"
                     /db_xref="PDB:5G6Q"
                     /db_xref="SubtiList:BG12948"
                     /db_xref="UniProtKB/Swiss-Prot:O34453"
                     /translation="MEEKEILWNEAKAFIAACYQELGKEEEVKDRLADIKSEIDLTGS
                     YVHTKEELEHGAKMAWRNSNRCIGRLFWNSLNVIDRRDVRTKEEVRDALFHHIETATN
                     NGKIRPTITIFPPEEKGEKQVEIWNHQLIRYAGYESDGERIGDPASCSLTAACEELGW
                     RGERTDFDLLPLIFRMKGDEQPVWYELPRSLVIEVPITHPDIEAFSDLELKWYGVPII
                     SDMKLEVGGIHYNAAPFNGWYMGTEIGARNLADEKRYDKLKKVASVIGIAADYNTDLW
                     KDQALVELNKAVLHSYKKQGVSIVDHHTAASQFKRFEEQEEEAGRKLTGDWTWLIPPI
                     SPAATHIFHRSYDNSIVKPNYFYQDKPYE*"
                     /label="nosA CDS"
     gene            760878..761969
                     /gene="nosA"
                     /locus_tag="BSU_07630"
                     /old_locus_tag="BSU07630"
                     /label="nosA gene"
     CDS             complement(761960..762235)
                     /gene="acyP"
                     /locus_tag="BSU_07640"
                     /old_locus_tag="BSU07640"
                     /EC_number="3.6.1.7"
                     /function="16.11: Scavenge (Catabolism)"
                     /function="16.8: Protect"
                     /function="16.6: Maintain"
                     /experiment="publication(s) with functional evidences,
                     PMID:20447399"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 20447399; Product type e:
                     enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="acylphosphatase"
                     /protein_id="NP_388645.1"
                     /db_xref="EnsemblGenomes-Gn:BSU07640"
                     /db_xref="EnsemblGenomes-Tr:CAB12593"
                     /db_xref="GOA:O35031"
                     /db_xref="InterPro:IPR001792"
                     /db_xref="InterPro:IPR017968"
                     /db_xref="InterPro:IPR020456"
                     /db_xref="InterPro:IPR036046"
                     /db_xref="PDB:2FHM"
                     /db_xref="PDB:2HLT"
                     /db_xref="PDB:2HLU"
                     /db_xref="PDB:3BR8"
                     /db_xref="SubtiList:BG12947"
                     /db_xref="UniProtKB/Swiss-Prot:O35031"
                     /translation="MLQYRIIVDGRVQGVGFRYFVQMEADKRKLAGWVKNRDDGRVEI
                     LAEGPENALQSFVEAVKNGSPFSKVTDISVTESRSLEGHHRFSIVYS*"
                     /label="acyP CDS"
     gene            complement(761960..762235)
                     /gene="acyP"
                     /locus_tag="BSU_07640"
                     /old_locus_tag="BSU07640"
                     /label="acyP gene"
     S_feature       761970..762301
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_837745_838076"
                     /HighExp="C90, BI, Paraq, LBGexp, Oxctl, M0t45, G150,
                     M40t45, G135, H2O2"
                     /AntisenseName="yflL"
                     /AntisenseCor="0.38657275217332299"
                     /AntisenseRegPval="-10.3"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.995"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S263"
     promotor_-10    complement(762249..762268)
                     /Source="Nicolas_upshift_promotors"
                     /id="U582"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.818181818181818"
                     /psig="0.998001998001998"
                     /xcortree=3152
                     /SigmaFactorBS="ctgaatagcgctcttgtttcatacaaacacatcCCCTTTACa
                     ggttgtaaaatgaTTGATTATCATAAAAAGAAAaggtggtttttacatgcttcaatac
                     c"
                     /listShort="yflL"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(762263)
                     /Source="Nicolas_upshifts"
                     /id="U582"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.818181818181818"
                     /psig="0.998001998001998"
                     /xcortree=3152
                     /SigmaFactorBS="ctgaatagcgctcttgtttcatacaaacacatcCCCTTTACa
                     ggttgtaaaatgaTTGATTATCATAAAAAGAAAaggtggtttttacatgcttcaatac
                     c"
                     /listShort="yflL"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(762283..762290)
                     /Source="Nicolas_upshift_promotors"
                     /id="U582"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.818181818181818"
                     /psig="0.998001998001998"
                     /xcortree=3152
                     /SigmaFactorBS="ctgaatagcgctcttgtttcatacaaacacatcCCCTTTACa
                     ggttgtaaaatgaTTGATTATCATAAAAAGAAAaggtggtttttacatgcttcaatac
                     c"
                     /listShort="yflL"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             762302..762967
                     /gene="yflK"
                     /locus_tag="BSU_07650"
                     /old_locus_tag="BSU07650"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 11886751; Product type
                     c: carrier"
                     /codon_start=1
                     /transl_table=11
                     /product="putative sulfur carrier"
                     /protein_id="NP_388646.1"
                     /db_xref="EnsemblGenomes-Gn:BSU07650"
                     /db_xref="EnsemblGenomes-Tr:CAB12594"
                     /db_xref="GOA:O34542"
                     /db_xref="InterPro:IPR005163"
                     /db_xref="InterPro:IPR005302"
                     /db_xref="InterPro:IPR011037"
                     /db_xref="SubtiList:BG12946"
                     /db_xref="UniProtKB/Swiss-Prot:O34542"
                     /translation="MKQERYSVLSLNLGKPQTLEYDGKKIETGIMKRPAKSAVMLYRE
                     NFEGDGQADLVNHGGPDKAVCVYPAEHYPFWEEFLSRPLSNAAFGENLTVAGLTEENV
                     CIGDVFRLDEAVVQVSQPRQPCVKLAKKFGVKEMVLKVQQTGYTGFYFRVLEEGRVSP
                     GANLELLSRGEKGISVQFANRINYHDAKNLTAIERILSEAALSESWRASFMKKKDRLL
                     PVE*"
                     /label="yflK CDS"
     gene            762302..762967
                     /gene="yflK"
                     /locus_tag="BSU_07650"
                     /old_locus_tag="BSU07650"
                     /label="yflK gene"
     CDS             complement(763008..763145)
                     /gene="yflJ"
                     /locus_tag="BSU_07660"
                     /old_locus_tag="BSU07660"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved hypothetical protein"
                     /protein_id="NP_388647.1"
                     /db_xref="EnsemblGenomes-Gn:BSU07660"
                     /db_xref="EnsemblGenomes-Tr:CAB12595"
                     /db_xref="InterPro:IPR022580"
                     /db_xref="SubtiList:BG12945"
                     /db_xref="UniProtKB/Swiss-Prot:O34345"
                     /translation="MHYGSKGWYVAELKKQGITHHEGRKLQSYKTYFLANLLESKKKQ
                     S*"
                     /label="yflJ CDS"
     gene            complement(763008..763145)
                     /gene="yflJ"
                     /locus_tag="BSU_07660"
                     /old_locus_tag="BSU07660"
                     /label="yflJ gene"
     downshifts      complement(763022)
                     /Source="Nicolas_upshifts"
                     /id="D381"
                     /incds=0
                     /nref=136
                     /ntot=260
                     /MaxReadThrough="0.0927600000000002"
                     /MaxDrop="8.10929"
                     /score="29.8336543"
                     /energy="-14.8"
                     /TU="NA"
                     /idTUdmin="U583"
                     /TUdmin="-11"
                     /isTUend="TRUE"
                     /label="downshifts"
     S_feature       complement(763146..763276)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_838921_839051_c"
                     /HighExp="S4, S7, S8, S6, S5, S3, B36, BT, LoTm, B60"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigEF, SigA"
                     /TUshortPSig="0.967, 1"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S264"
     promotor_-10    complement(763262..763280)
                     /Source="Nicolas_upshift_promotors"
                     /id="U583"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.967032967032967"
                     /psig="0.967032967032967"
                     /xcortree=1134
                     /SigmaFactorBS="ttggcgttgtcatgatcaaactaaccggccattaaATCATAt
                     tcggcttttgctccGCATATACATTCAGAAGAAcattcgtacatctagtgcgaaaggc
                     t"
                     /listShort="S264, yflJ"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     promotor_-35    763272..763277
                     /Source="Nicolas_upshift_promotors"
                     /id="U584"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp=1
                     /psig=1
                     /xcortree=1109
                     /SigmaFactorBS="gaaaactgagcctttcgcactagatgtacgaatgttcttctg
                     aaTGTATAtgcggagcaaaagccGAATATGATTTAATGGCCGgttagtttgatcatga
                     c"
                     /listShort="S265"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     upshifts        complement(763276)
                     /Source="Nicolas_upshifts"
                     /id="U583"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.967032967032967"
                     /psig="0.967032967032967"
                     /xcortree=1134
                     /SigmaFactorBS="ttggcgttgtcatgatcaaactaaccggccattaaATCATAt
                     tcggcttttgctccGCATATACATTCAGAAGAAcattcgtacatctagtgcgaaaggc
                     t"
                     /listShort="S264, yflJ"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     S_feature       763287..764351
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_839062_840126"
                     /HighExp="S8, S6, S5, S7, S4, S3, BT, B36, C90, T5.0H"
                     /AntisenseName="mapB"
                     /AntisenseCor="-0.26446079057314398"
                     /AntisenseRegPval="-5"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigEF"
                     /TUshortPSig=1
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S265"
     upshifts        763288
                     /Source="Nicolas_upshifts"
                     /id="U584"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp=1
                     /psig=1
                     /xcortree=1109
                     /SigmaFactorBS="gaaaactgagcctttcgcactagatgtacgaatgttcttctg
                     aaTGTATAtgcggagcaaaagccGAATATGATTTAATGGCCGgttagtttgatcatga
                     c"
                     /listShort="S265"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-10    763293..763311
                     /Source="Nicolas_upshift_promotors"
                     /id="U584"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp=1
                     /psig=1
                     /xcortree=1109
                     /SigmaFactorBS="gaaaactgagcctttcgcactagatgtacgaatgttcttctg
                     aaTGTATAtgcggagcaaaagccGAATATGATTTAATGGCCGgttagtttgatcatga
                     c"
                     /listShort="S265"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     promotor_-35    complement(763296..763301)
                     /Source="Nicolas_upshift_promotors"
                     /id="U583"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.967032967032967"
                     /psig="0.967032967032967"
                     /xcortree=1134
                     /SigmaFactorBS="ttggcgttgtcatgatcaaactaaccggccattaaATCATAt
                     tcggcttttgctccGCATATACATTCAGAAGAAcattcgtacatctagtgcgaaaggc
                     t"
                     /listShort="S264, yflJ"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             complement(763302..763457)
                     /gene="yflI"
                     /locus_tag="BSU_07670"
                     /old_locus_tag="BSU07670"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved membrane protein"
                     /protein_id="NP_388648.1"
                     /db_xref="EnsemblGenomes-Gn:BSU07670"
                     /db_xref="EnsemblGenomes-Tr:CAB12596"
                     /db_xref="GOA:O34905"
                     /db_xref="SubtiList:BG12944"
                     /db_xref="UniProtKB/Swiss-Prot:O34905"
                     /translation="MWFIIFGIIFFIEGIIMTVYGVKKKNGMLTYIGIVFAIMTFGVV
                     MIKLTGH*"
                     /label="yflI CDS"
     gene            complement(763302..763457)
                     /gene="yflI"
                     /locus_tag="BSU_07670"
                     /old_locus_tag="BSU07670"
                     /label="yflI gene"
     S_feature       complement(763458..763563)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_839233_839338_c"
                     /HighExp="Etha, Salt, Diami, dia15, H2O2, Cold, G135,
                     Paraq, LPhT, G150"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig=1
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S266"
     CDS             complement(763564..763878)
                     /gene="yflH"
                     /locus_tag="BSU_07680"
                     /old_locus_tag="BSU07680"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 1070366, 1266368;
                     Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative enzyme"
                     /protein_id="NP_388649.1"
                     /db_xref="EnsemblGenomes-Gn:BSU07680"
                     /db_xref="EnsemblGenomes-Tr:CAB12597"
                     /db_xref="InterPro:IPR021637"
                     /db_xref="PDB:3D0W"
                     /db_xref="SubtiList:BG12943"
                     /db_xref="UniProtKB/Swiss-Prot:O34306"
                     /translation="MNRDQEKIQIENEMNAMHGTIKEDILKDFEEFKGYLKKQVNRGK
                     KLGLDDGKLVKSAAILGDYLAKHEEPQNGEEMLLQELWSVADEDEKEHLAQLLVKLVD
                     KQ*"
                     /label="yflH CDS"
     gene            complement(763564..763878)
                     /gene="yflH"
                     /locus_tag="BSU_07680"
                     /old_locus_tag="BSU07680"
                     /label="yflH gene"
     S_feature       complement(763879..763959)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_839654_839734_c"
                     /HighExp="dia5, dia15, Diami, LBGtran, LPhT, H2O2, Etha,
                     Lbtran, M40t45, M40t90"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA, SigK"
                     /TUshortPSig="1, 1"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S267"
     CDS             complement(763960..764709)
                     /gene="mapB"
                     /locus_tag="BSU_07690"
                     /old_locus_tag="BSU07690"
                     /EC_number="3.4.11.18"
                     /function="16.11: Scavenge (Catabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:16207374"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 16207374; Product type e:
                     enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="methionine aminopeptidase B"
                     /protein_id="NP_388650.1"
                     /db_xref="EnsemblGenomes-Gn:BSU07690"
                     /db_xref="EnsemblGenomes-Tr:CAB12598"
                     /db_xref="GOA:O34484"
                     /db_xref="InterPro:IPR000994"
                     /db_xref="InterPro:IPR001714"
                     /db_xref="InterPro:IPR002467"
                     /db_xref="InterPro:IPR036005"
                     /db_xref="SubtiList:BG12942"
                     /db_xref="UniProtKB/Swiss-Prot:O34484"
                     /translation="MIVTNDQELEGLKKIGRIVALAREEMKRKAEPGMSTKDLDLIGK
                     AVLDEHGAVSAPEKEYDFPGVTCISVNDEVAHGIPSTSKILKAGDLVNIDISAEFGGF
                     YSDTGISFVLGEGEERLHKLCQCAENAFQKGLQQAKAGKRQNQIGRAVYHEARSQGFT
                     VIKTLTGHGIGRSLHEAPNHIMNYYDPFDNALFKNGTVIALEPFISTKAETIVEAGDG
                     WTFKTPDKSMVAQVEHTIVITKDEPIILTKL*"
                     /label="mapB CDS"
     gene            complement(763960..764709)
                     /gene="mapB"
                     /locus_tag="BSU_07690"
                     /old_locus_tag="BSU07690"
                     /label="mapB gene"
     promotor_-10    complement(764738..764757)
                     /Source="Nicolas_upshift_promotors"
                     /id="U585"
                     /multdbtbs="SigA"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.786213786213786"
                     /psig=1
                     /xcortree=1950
                     /SigmaFactorBS="cccgggggtatttcttttttcccaggtccgtgtgTTTCCTAT
                     TtttaagacagtTGTGGTAAGCTTAATCTAGAttatttaaaaagaaagcgggaatgac
                     a"
                     /listShort="mapB, S267, yflH, S266, yflI, S264, yflJ"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(764751)
                     /Source="Nicolas_upshifts"
                     /id="U585"
                     /multdbtbs="SigA"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.786213786213786"
                     /psig=1
                     /xcortree=1950
                     /SigmaFactorBS="cccgggggtatttcttttttcccaggtccgtgtgTTTCCTAT
                     TtttaagacagtTGTGGTAAGCTTAATCTAGAttatttaaaaagaaagcgggaatgac
                     a"
                     /listShort="mapB, S267, yflH, S266, yflI, S264, yflJ"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     S_feature       complement(764753..765889)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_840528_841664_c"
                     /HighExp="S6, S8, S7, S5, BT, C30, Paraq, B36, G180, Pyr"
                     /AntisenseName="nagP"
                     /AntisenseCor="0.180776000778922"
                     /AntisenseRegPval="-2.5"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigK"
                     /TUshortPSig=1
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S268"
     promotor_-35    complement(764769..764777)
                     /Source="Nicolas_upshift_promotors"
                     /id="U585"
                     /multdbtbs="SigA"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.786213786213786"
                     /psig=1
                     /xcortree=1950
                     /SigmaFactorBS="cccgggggtatttcttttttcccaggtccgtgtgTTTCCTAT
                     TtttaagacagtTGTGGTAAGCTTAATCTAGAttatttaaaaagaaagcgggaatgac
                     a"
                     /listShort="mapB, S267, yflH, S266, yflI, S264, yflJ"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-35    764820..764821
                     /Source="Nicolas_upshift_promotors"
                     /id="U586"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.493506493506494"
                     /psig="0.995004995004995"
                     /xcortree=1559
                     /SigmaFactorBS="gacctgggaaaaaagaaatacccccgggaaaattggTAtaga
                     tcactagatatcttaTATGGTATATTTGAAAAAAAagggtatgagggggatgggtatg
                     c"
                     /listShort="nagP"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    764841..764860
                     /Source="Nicolas_upshift_promotors"
                     /id="U586"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.493506493506494"
                     /psig="0.995004995004995"
                     /xcortree=1559
                     /SigmaFactorBS="gacctgggaaaaaagaaatacccccgggaaaattggTAtaga
                     tcactagatatcttaTATGGTATATTTGAAAAAAAagggtatgagggggatgggtatg
                     c"
                     /listShort="nagP"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        764844
                     /Source="Nicolas_upshifts"
                     /id="U586"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.493506493506494"
                     /psig="0.995004995004995"
                     /xcortree=1559
                     /SigmaFactorBS="gacctgggaaaaaagaaatacccccgggaaaattggTAtaga
                     tcactagatatcttaTATGGTATATTTGAAAAAAAagggtatgagggggatgggtatg
                     c"
                     /listShort="nagP"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             764881..766239
                     /gene="nagP"
                     /locus_tag="BSU_07700"
                     /old_locus_tag="BSU07700"
                     /function="16.11: Scavenge (Catabolism)"
                     /function="16.1: Circulate"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 2b: Function from indirect experimental
                     evidences (e.g. phenotypes); PubMedId: 15849754, 16850406,
                     8246840; Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphotransferase system (PTS)
                     N-acetylglucosamine-specific enzyme IICB component"
                     /protein_id="NP_388651.1"
                     /db_xref="EnsemblGenomes-Gn:BSU07700"
                     /db_xref="EnsemblGenomes-Tr:CAB12599"
                     /db_xref="GOA:O34521"
                     /db_xref="InterPro:IPR001996"
                     /db_xref="InterPro:IPR003352"
                     /db_xref="InterPro:IPR010974"
                     /db_xref="InterPro:IPR013013"
                     /db_xref="InterPro:IPR018113"
                     /db_xref="InterPro:IPR036878"
                     /db_xref="SubtiList:BG12941"
                     /db_xref="UniProtKB/Swiss-Prot:O34521"
                     /translation="MLSFLQKLGKSFMLPIAVLPAVGIILALGREDVFNIPFVYQAGT
                     AVFDHLPLIFAIGIAIGISKDSNGAAGLSGAISYLMLDAATKTIDKTNNMAVFGGIIA
                     GLIAGYTYNRFKDTKLPEYLGFFSGRRLVPILTAIITIILAGIFGVVWPPIQSCINSF
                     GEWMLGLGGIGAGIFGLFNRLLIPLGLHHVLNNIFWFQFGEYNGVTGDLARFFAKDPT
                     AGTYMTGFFPIMMFGLPAACLAMVVTAKPSKRKATAGMMIGFALTAFITGITEPIEFA
                     FMFLSPLLYAVHAVLTGLSLFIVNWLGIRSGFSFSAGAIDYVLSYGIAEKPLLLLLVG
                     ICYAAVYFIVFYVLIKALNLKTPGREDDDVDEVLDENTVQDVNENIMLKGLGGKENLQ
                     TIDHCATRLRLTVKDTALVDEALLKKAGAKGVVKSGGQSVQVIIGPNVEFAAEELRAA
                     VK*"
                     /label="nagP CDS"
     gene            764881..766239
                     /gene="nagP"
                     /locus_tag="BSU_07700"
                     /old_locus_tag="BSU07700"
                     /label="nagP gene"
     promotor_-10    complement(765875..765894)
                     /Source="Nicolas_upshift_promotors"
                     /id="U587"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp=1
                     /psig=1
                     /xcortree=1378
                     /SigmaFactorBS="gcgtttttaaattcaaagccttaatcagtacaTAAAACACGA
                     taaagtatactgcCGCATAGCATATACCTACCAaaagcagaagcagcggtttttccgc
                     g"
                     /listShort="S268, mapB, S267, yflH"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(765889)
                     /Source="Nicolas_upshifts"
                     /id="U587"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp=1
                     /psig=1
                     /xcortree=1378
                     /SigmaFactorBS="gcgtttttaaattcaaagccttaatcagtacaTAAAACACGA
                     taaagtatactgcCGCATAGCATATACCTACCAaaagcagaagcagcggtttttccgc
                     g"
                     /listShort="S268, mapB, S267, yflH"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(765908..765917)
                     /Source="Nicolas_upshift_promotors"
                     /id="U587"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp=1
                     /psig=1
                     /xcortree=1378
                     /SigmaFactorBS="gcgtttttaaattcaaagccttaatcagtacaTAAAACACGA
                     taaagtatactgcCGCATAGCATATACCTACCAaaagcagaagcagcggtttttccgc
                     g"
                     /listShort="S268, mapB, S267, yflH"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     downshifts      766125
                     /Source="Nicolas_upshifts"
                     /id="D382"
                     /incds=1
                     /nref=1
                     /ntot=106
                     /MaxReadThrough="3.67421"
                     /MaxDrop="3.12268"
                     /score="44.7832762"
                     /energy="-16.9"
                     /TU="U586"
                     /idTUdmin="U586"
                     /TUdmin="-88"
                     /isTUend="FALSE"
                     /label="downshifts"
     downshifts      766235
                     /Source="Nicolas_upshifts"
                     /id="D383"
                     /incds=0
                     /nref=2
                     /ntot=87
                     /MaxReadThrough="2.54331"
                     /MaxDrop="3.17508"
                     /score="44.7832762"
                     /energy="-16.9"
                     /TU="NA"
                     /idTUdmin="U586"
                     /TUdmin=22
                     /isTUend="TRUE"
                     /label="downshifts"
     CDS             complement(766272..768221)
                     /gene="ltaSB"
                     /locus_tag="BSU_07710"
                     /old_locus_tag="BSU07710"
                     /function="16.1: Circulate"
                     /function="16.13: Shape"
                     /experiment="publication(s) with functional evidences,
                     PMID:10658653, 21255105"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 10658653, 21255105;
                     Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="enzyme responsible for polyglycerolphosphate
                     LTAsynthesis"
                     /protein_id="NP_388652.1"
                     /db_xref="EnsemblGenomes-Gn:BSU07710"
                     /db_xref="EnsemblGenomes-Tr:CAB12600"
                     /db_xref="GOA:O34952"
                     /db_xref="InterPro:IPR000917"
                     /db_xref="InterPro:IPR012160"
                     /db_xref="InterPro:IPR017849"
                     /db_xref="InterPro:IPR017850"
                     /db_xref="PDB:2W8D"
                     /db_xref="SubtiList:BG12940"
                     /db_xref="UniProtKB/Swiss-Prot:O34952"
                     /translation="MKTFIKERGLAFFLIAVVLLWIKTYVGYVLNFNLGIDNTIQKIL
                     LFVNPLSSSLFFLGFGLLFKKKLQQTAIIVIHFLMSFLLYANIVYYRFFNDFITIPVI
                     MQAKTNGGQLGDSAFSLMRPTDAFYFIDTIILIILAIKVNKPAETSSKKSFRIIFASS
                     ILVFLINLAVAESDRPELLTRSFDRNYLVKYLGTYNFTIYDAVQNIKSNSQRALADSS
                     DVTEVENYMKANYDVPNNVYFGKAEGKNVIYVSLESLQSFIIDYKIDGKEVTPFLNKL
                     AHDNETFYFDNFFHQTGQGKTSDAEFMMENSLYPLAQGSVFVNKAQNTLQSVPAILKS
                     KNYTSATFHGNTQTFWNRNEMYKAEGIDKFFDSAYYDMNEENTKNYGMKDKPFFKESM
                     PLLESLPQPFYTKFITLSNHFPFGMDEGDTDFPAGDFGDSVVDNYFQSAHYLDQSIEQ
                     FFNDLKKDGLYDKSIIVMYGDHYGISENHNKAMAKVLGKDEITDYDNAQLQRVPLFIH
                     AAGVKGEKVHKYAGDVDVAPTILHLLGVDTKDYLMSGSDILSKEHREVIPFRNGDFIS
                     PKYTKISGKYYDTKTGKELDESEVDKSEDSLVKKELEMSDKIINGDLLRFYEPKGFKK
                     VNPSDYDYTKHDEDSSETSKDNEDK*"
                     /label="ltaSB CDS"
     gene            complement(766272..768221)
                     /gene="ltaSB"
                     /locus_tag="BSU_07710"
                     /old_locus_tag="BSU07710"
                     /label="ltaSB gene"
     downshifts      complement(766289)
                     /Source="Nicolas_upshifts"
                     /id="D384"
                     /incds=0
                     /nref=219
                     /ntot=250
                     /MaxReadThrough="1.71031"
                     /MaxDrop="6.08461"
                     /score="43.6427282"
                     /energy="-15.9"
                     /TU="NA"
                     /idTUdmin="U589"
                     /TUdmin=0
                     /isTUend="TRUE"
                     /label="downshifts"
     promotor_-35    767331..767337
                     /Source="Nicolas_upshift_promotors"
                     /id="U588"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp="0.999000999001"
                     /psig="0.999000999001"
                     /xcortree=153
                     /SigmaFactorBS="acagagagttttccatcataaattcagcatcagaTGTTTTAc
                     cttgtcccgtttggTGGAAAAAGTTATCAAAGTagaacgtttcgttatcatgtgccag
                     t"
                     /listShort="S269, yflD, yflB"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    767353..767371
                     /Source="Nicolas_upshift_promotors"
                     /id="U588"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp="0.999000999001"
                     /psig="0.999000999001"
                     /xcortree=153
                     /SigmaFactorBS="acagagagttttccatcataaattcagcatcagaTGTTTTAc
                     cttgtcccgtttggTGGAAAAAGTTATCAAAGTagaacgtttcgttatcatgtgccag
                     t"
                     /listShort="S269, yflD, yflB"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     S_feature       767357..768321
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_843132_844096"
                     /HighExp="Etha, Salt, Sw, Gly, C30, M9-stat, S8, B60, BC,
                     S7"
                     /AntisenseName="yflE"
                     /AntisenseCor="-0.385555454026206"
                     /AntisenseRegPval="-10.199999999999999"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigB"
                     /TUshortPSig="0.999"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S269"
     upshifts        767357
                     /Source="Nicolas_upshifts"
                     /id="U588"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp="0.999000999001"
                     /psig="0.999000999001"
                     /xcortree=153
                     /SigmaFactorBS="acagagagttttccatcataaattcagcatcagaTGTTTTAc
                     cttgtcccgtttggTGGAAAAAGTTATCAAAGTagaacgtttcgttatcatgtgccag
                     t"
                     /listShort="S269, yflD, yflB"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     S_feature       complement(768222..768296)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_843997_844071_c"
                     /HighExp="Paraq, H2O2, LBGexp, G150, G135, G180, Lbexp,
                     C30, LPhT, BMM"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig=1
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S270"
     promotor_-10    complement(768273..768292)
                     /Source="Nicolas_upshift_promotors"
                     /id="U589"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.956043956043956"
                     /psig=1
                     /xcortree=2614
                     /SigmaFactorBS="gattcgacggcgtttttcgccactttctccctcatacgattt
                     tcACTTTtctaatctgctgattCGTGTTATATTGGATACGTTcgttttttctatcgtt
                     t"
                     /listShort="S270, yflE"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(768296)
                     /Source="Nicolas_upshifts"
                     /id="U589"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.956043956043956"
                     /psig=1
                     /xcortree=2614
                     /SigmaFactorBS="gattcgacggcgtttttcgccactttctccctcatacgattt
                     tcACTTTtctaatctgctgattCGTGTTATATTGGATACGTTcgttttttctatcgtt
                     t"
                     /listShort="S270, yflE"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     S_feature       complement(768298..768820)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_844073_844595_c"
                     /HighExp="S3, LoTm, S7, S4, S5, S8, S6, M9-stat, C30, Pyr"
                     /AntisenseName="yflD"
                     /AntisenseCor="0.24383322556613099"
                     /AntisenseRegPval="-4.3"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigEF"
                     /TUshortPSig=1
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S271"
     promotor_-35    complement(768308..768312)
                     /Source="Nicolas_upshift_promotors"
                     /id="U589"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.956043956043956"
                     /psig=1
                     /xcortree=2614
                     /SigmaFactorBS="gattcgacggcgtttttcgccactttctccctcatacgattt
                     tcACTTTtctaatctgctgattCGTGTTATATTGGATACGTTcgttttttctatcgtt
                     t"
                     /listShort="S270, yflE"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             768322..768459
                     /gene="yflD"
                     /locus_tag="BSU_07720"
                     /old_locus_tag="BSU07720"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 5: Unknown function"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="NP_388653.1"
                     /db_xref="EnsemblGenomes-Gn:BSU07720"
                     /db_xref="EnsemblGenomes-Tr:CAB12601"
                     /db_xref="SubtiList:BG12939"
                     /db_xref="UniProtKB/Swiss-Prot:O34489"
                     /translation="MREKVAKNAVESTFRFDITKCKTRYLSRNKGIKWYIENCMIKYK
                     V*"
                     /label="yflD CDS"
     gene            768322..768459
                     /gene="yflD"
                     /locus_tag="BSU_07720"
                     /old_locus_tag="BSU07720"
                     /label="yflD gene"
     upshifts        768437
                     /Source="Nicolas_upshifts"
                     /id="U590"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.895104895104895"
                     /psig="0.952047952047952"
                     /xcortree=589
                     /SigmaFactorBS="ccaaatgtaaaacaaggtatctttctagaaataaaggaataa
                     aatggtacattgagaattgTATGATAAAATATAAGGTATagataaaaagaggtgaaat
                     g"
                     /listShort="yflB"
                     /listLong="yflA, S272"
                     /label="upshifts"
     misc_feature    768438..768457
                     /Source="Nicolas_upshift_promotors"
                     /id="U590"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.895104895104895"
                     /psig="0.952047952047952"
                     /xcortree=589
                     /SigmaFactorBS="ccaaatgtaaaacaaggtatctttctagaaataaaggaataa
                     aatggtacattgagaattgTATGATAAAATATAAGGTATagataaaaagaggtgaaat
                     g"
                     /listShort="yflB"
                     /listLong="yflA, S272"
                     /label="promotor_single_box"
                     /note="Geneious type: promotor_single_box"
     CDS             768478..768870
                     /gene="yflB"
                     /locus_tag="BSU_07735"
                     /old_locus_tag="BSU07735"
                     /function="18: Unknown function"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved hypothetical protein"
                     /protein_id="NP_388655.2"
                     /db_xref="EnsemblGenomes-Gn:BSU07735"
                     /db_xref="EnsemblGenomes-Tr:CAB12603"
                     /db_xref="InterPro:IPR018961"
                     /db_xref="SubtiList:BG12937"
                     /db_xref="UniProtKB/Swiss-Prot:O34887"
                     /translation="MDFSHIVSEDKIKRAIKDGDFQNLPGMGKPLPKDDAAHLPESLR
                     MGYRILKNAGMAEDEGALKKELMTIDHLIEKCYDEKEREQLIRKKSEKQLLLDKLVDK
                     KGMFSKPASAFYKNKVYDRLGRNRPSSS*"
                     /label="yflB CDS"
     gene            768478..768870
                     /gene="yflB"
                     /locus_tag="BSU_07735"
                     /old_locus_tag="BSU07735"
                     /label="yflB gene"
     promotor_-10    complement(768818..768836)
                     /Source="Nicolas_upshift_promotors"
                     /id="U591"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp=1
                     /psig=1
                     /xcortree=999
                     /SigmaFactorBS="cgccatcctgcagacaagacaaatcagctggaagaaGGTCTG
                     tttcgtccaagccggTCATATACTTTATTCTTATaaaaagcggatgctggctttgaaa
                     a"
                     /listShort="S271"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(768833)
                     /Source="Nicolas_upshifts"
                     /id="U591"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp=1
                     /psig=1
                     /xcortree=999
                     /SigmaFactorBS="cgccatcctgcagacaagacaaatcagctggaagaaGGTCTG
                     tttcgtccaagccggTCATATACTTTATTCTTATaaaaagcggatgctggctttgaaa
                     a"
                     /listShort="S271"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(768852..768857)
                     /Source="Nicolas_upshift_promotors"
                     /id="U591"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp=1
                     /psig=1
                     /xcortree=999
                     /SigmaFactorBS="cgccatcctgcagacaagacaaatcagctggaagaaGGTCTG
                     tttcgtccaagccggTCATATACTTTATTCTTATaaaaagcggatgctggctttgaaa
                     a"
                     /listShort="S271"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-35    768939..768945
                     /Source="Nicolas_upshift_promotors"
                     /id="U592"
                     /multdbtbs="SigB"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp=1
                     /psig=1
                     /xcortree=234
                     /SigmaFactorBS="aaaagccatcctttttatgttccaagttctatgtcaaaaGGT
                     TTATgtttttccatctatGGGAAATGATTCATAAACGaaaaaagggtgatgggatgga
                     a"
                     /listShort="yflA, S272"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    768960..768978
                     /Source="Nicolas_upshift_promotors"
                     /id="U592"
                     /multdbtbs="SigB"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp=1
                     /psig=1
                     /xcortree=234
                     /SigmaFactorBS="aaaagccatcctttttatgttccaagttctatgtcaaaaGGT
                     TTATgtttttccatctatGGGAAATGATTCATAAACGaaaaaagggtgatgggatgga
                     a"
                     /listShort="yflA, S272"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        768960
                     /Source="Nicolas_upshifts"
                     /id="U592"
                     /multdbtbs="SigB"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp=1
                     /psig=1
                     /xcortree=234
                     /SigmaFactorBS="aaaagccatcctttttatgttccaagttctatgtcaaaaGGT
                     TTATgtttttccatctatGGGAAATGATTCATAAACGaaaaaagggtgatgggatgga
                     a"
                     /listShort="yflA, S272"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             768995..770410
                     /gene="yflA"
                     /locus_tag="BSU_07750"
                     /old_locus_tag="BSU07750"
                     /function="16.1: Circulate"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 15849754, 16850406;
                     Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="putative aminoacid transporter"
                     /protein_id="NP_388656.1"
                     /db_xref="EnsemblGenomes-Gn:BSU07750"
                     /db_xref="EnsemblGenomes-Tr:CAB12604"
                     /db_xref="GOA:O34708"
                     /db_xref="InterPro:IPR001463"
                     /db_xref="SubtiList:BG12936"
                     /db_xref="UniProtKB/Swiss-Prot:O34708"
                     /translation="MERLLVWIEHISDWLWGPPLIILLTGTGLYFTILLKGFQFRYPL
                     YIFKQTIGSVGKKPKGEGTVTPLQALTSALSSTIGAANIVGVPAAIMFGGPGAVFWMW
                     LIALFAMAIKFSESVLAVHYREKNEQGEYVGGPMYYITKGLRMKWLGVFFSVALIVEL
                     IPSIMVQGNSVSVSLAETFSFNKIYAGIGIAFLIGLVVIGGVKRIGKVTEFVVPLMAG
                     AYAGAGLLIVLMNLSSVPAFFSLVFSNAFTSSSAVGGFAGAALAETVRWGFARGLYSN
                     EAGMGTAPIAHAAAMTDHPVRQGFWSVIGIVIDTLIICTTTAFIVLASGVWTGKNASN
                     DPAALTTAAFQHYFGSGGGYFVSVSLVFFVVSTIMVVIFYGVKQAEFLFGRLAGHVIK
                     FVYLAAIIIGAAGGAKAIWGVLDLALVFIVVPNVIALLLLSRKVKALYTEFFTSEQYY
                     LKDIRKTKQKPVYPTKEAKNS*"
                     /label="yflA CDS"
     gene            768995..770410
                     /gene="yflA"
                     /locus_tag="BSU_07750"
                     /old_locus_tag="BSU07750"
                     /label="yflA gene"
     downshifts      complement(768996)
                     /Source="Nicolas_upshifts"
                     /id="D385"
                     /incds=0
                     /nref=4
                     /ntot=16
                     /MaxReadThrough="0.76492"
                     /MaxDrop="4.20973"
                     /score="43.6427282"
                     /energy="-15.9"
                     /TU="NA"
                     /idTUdmin="U593"
                     /TUdmin=22
                     /isTUend="TRUE"
                     /label="downshifts"
     promotor_no_box complement(769022..769122)
                     /Source="Nicolas_upshift_promotors"
                     /id="U593"
                     /multdbtbs="-"
                     /comp="M13"
                     /sig="Sig-"
                     /pcomp="0.723276723276723"
                     /psig="0.006993006993007"
                     /xcortree=122
                     /SigmaFactorBS="ggatagcgaaattgaaaacctttcagcaaaatagtgaaatac
                     aagcccgtccccgtcagcaggatgattagcggcggaccccacagccaatcagatatat
                     g"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_no_box"
     upshifts        complement(769062)
                     /Source="Nicolas_upshifts"
                     /id="U593"
                     /multdbtbs="-"
                     /comp="M13"
                     /sig="Sig-"
                     /pcomp="0.723276723276723"
                     /psig="0.006993006993007"
                     /xcortree=122
                     /SigmaFactorBS="ggatagcgaaattgaaaacctttcagcaaaatagtgaaatac
                     aagcccgtccccgtcagcaggatgattagcggcggaccccacagccaatcagatatat
                     g"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             complement(770407..771483)
                     /gene="yfkT"
                     /locus_tag="BSU_07760"
                     /old_locus_tag="BSU07760"
                     /function="16.5: Explore"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 10762253, 15849754,
                     16850406, 23625846; Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="putative spore germination integral inner
                     membrane transporter"
                     /protein_id="NP_388657.1"
                     /db_xref="EnsemblGenomes-Gn:BSU07760"
                     /db_xref="EnsemblGenomes-Tr:CAB12605"
                     /db_xref="GOA:O34573"
                     /db_xref="InterPro:IPR004761"
                     /db_xref="SubtiList:BG12935"
                     /db_xref="UniProtKB/Swiss-Prot:O34573"
                     /translation="MDKTSAYQGLFFGALYTLAVGLKHAPILMIESAKQNAWHSYILG
                     VVIVIPALWLMHRLMKKHQDKNIYELLSDSSPIAGRIIILLFSLYFLLINAHDIRFFI
                     NLINILFLPRTPMAVLGGVIIFVAICIAREGKETLTRMAQIFLFPFGILVLFLPFTLA
                     TQIELQNLTPVFEGLIPYLQSGYYAFGTMGELIILPLLFSNRSVPLKYTIFAILLGAL
                     LLAVMLFSSISVFGPNLTSTFFDPAYMVIRQIRITDFLDRSDLIIAAFWIPVIMVKIA
                     GSLYIVVYGLSFLHSKIDPKAMYTPTGMFSVVCGFWFFLNTNQLIDFNRIKPIINVVI
                     SLLLPLLIYLIIKSKALFGAKAKH*"
                     /label="yfkT CDS"
     gene            complement(770407..771483)
                     /gene="yfkT"
                     /locus_tag="BSU_07760"
                     /old_locus_tag="BSU07760"
                     /label="yfkT gene"
     S_feature       770411..773777
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_846186_849552"
                     /HighExp="Salt, Sw, Etha, LoTm, B36, Heat, LPhT, BC,
                     T0.30H, H2O2"
                     /AntisenseName="yfkR"
                     /AntisenseCor="-1.3937740774571999E-3"
                     /AntisenseRegPval=0
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigB"
                     /TUshortPSig=1
                     /TUlongSig="SigA"
                     /TUlongPSig="0.952"
                     /label="S272"
     CDS             complement(771507..771707)
                     /gene="yfkS"
                     /locus_tag="BSU_07770"
                     /old_locus_tag="BSU07770"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 23625846; Product type
                     rc: receptor"
                     /codon_start=1
                     /transl_table=11
                     /product="putative spore germination D protein"
                     /protein_id="NP_388658.1"
                     /db_xref="EnsemblGenomes-Gn:BSU07770"
                     /db_xref="EnsemblGenomes-Tr:CAB12606"
                     /db_xref="GOA:O35036"
                     /db_xref="SubtiList:BG12934"
                     /db_xref="UniProtKB/Swiss-Prot:O35036"
                     /translation="MISYIVQTLIVCIAIYAYEWKNFRSANNLTKWAFSLLIAGSAFL
                     WIYMRVNPLLPRLGHLFKYIPF*"
                     /label="yfkS CDS"
     gene            complement(771507..771707)
                     /gene="yfkS"
                     /locus_tag="BSU_07770"
                     /old_locus_tag="BSU07770"
                     /label="yfkS gene"
     CDS             complement(771723..772877)
                     /gene="yfkR"
                     /locus_tag="BSU_07780"
                     /old_locus_tag="BSU07780"
                     /function="16.5: Explore"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 10762253, 23625846;
                     Product type f: factor"
                     /codon_start=1
                     /transl_table=11
                     /product="putative spore germination protein"
                     /protein_id="NP_388659.1"
                     /db_xref="EnsemblGenomes-Gn:BSU07780"
                     /db_xref="EnsemblGenomes-Tr:CAB12607"
                     /db_xref="GOA:O35028"
                     /db_xref="InterPro:IPR008844"
                     /db_xref="SubtiList:BG12933"
                     /db_xref="UniProtKB/Swiss-Prot:O35028"
                     /translation="MKKTIYKCVLPLLICILLTGCWDRTEINDIAFVVSSAIDKKKDQ
                     YRVAMQIPLVGQLGGQTGGGGGTAGSKTWYVDSASGTTIREANNKLQTSLSRTINTSH
                     RRTVIIGEDMARDGVAPVFDILTRNPQNRLTALILVSRGEARDILNTDVQLEQFPAEM
                     IRELAIIATSRPVFLSRFMSDLVEIGSDPYAPVISASKTKPGGKGKSNLKIDGLAIFK
                     KDRLMDIFKDEHMTAALMLLNQARQPEFIVDLPNQMGQASIQLQKSNASFHAAEKNGK
                     LSMTIEIRAKGIIMENQSTYETRENDQYYIIQKALNRTIKKDVISTVHRLQKLKADPA
                     GFQDRTIRSTATTKNLLKKEWEEVYKDMEVHVVPIVTIEQGGVLYKTISH*"
                     /label="yfkR CDS"
     gene            complement(771723..772877)
                     /gene="yfkR"
                     /locus_tag="BSU_07780"
                     /old_locus_tag="BSU07780"
                     /label="yfkR gene"
     CDS             complement(772858..774399)
                     /gene="yfkQ"
                     /locus_tag="BSU_07790"
                     /old_locus_tag="BSU07790"
                     /function="16.5: Explore"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 10762253, 23625846;
                     Product type f: factor"
                     /codon_start=1
                     /transl_table=11
                     /product="putative spore germination protein"
                     /protein_id="NP_388660.1"
                     /db_xref="EnsemblGenomes-Gn:BSU07790"
                     /db_xref="EnsemblGenomes-Tr:CAB12608"
                     /db_xref="GOA:O34486"
                     /db_xref="InterPro:IPR004995"
                     /db_xref="SubtiList:BG12932"
                     /db_xref="UniProtKB/Swiss-Prot:O34486"
                     /translation="MNKRDKALQLIKELEDNQDRPISPNLKENLENLTLLTEGCSDIV
                     FRQFDFGNGLCGFIVYIEGIVKSEHIQDHALRPFLMHLTDQIDEHEEALQNTLSISSV
                     ALETSMSKVAASIIEGNAVLFADGHSKGLILNIKGGQRRSIEEPITESTIRGSREGFT
                     ESLRVNTALVRFRVKTFQLKMISFKIGTKTKTDVVLAYIDGLADPKVIDKAKKRIKKI
                     KIDAVLESGYIEEFIEDDTYSPFPQLQYTERPDTVAAQLLEGRFAIFTDNTPFVLTGP
                     ITFWQLMQASEDYYERYLMSNLIRWLRYMFLFVALYLPAIYVAVITYHQDLMPTNLMF
                     SVASAREPIPFPAIIEALIMEISFEALREAGVRLPKTIGQTVSILGALVIGTAAVEAG
                     IVSAPMVIIVSLTGIASFTIPRFNLAISIRMLRFPLMFLASIFGIFGIMLGTIILVLH
                     LCKLQSFGIPYLSGISPFKRDEVKDIFVRAPWWTMTRRPGTYSRGNGQKGAKREDPKD
                     EENNI*"
                     /label="yfkQ CDS"
     gene            complement(772858..774399)
                     /gene="yfkQ"
                     /locus_tag="BSU_07790"
                     /old_locus_tag="BSU07790"
                     /label="yfkQ gene"
     promotor_-10    complement(774449..774460)
                     /Source="Nicolas_upshift_promotors"
                     /id="U594"
                     /multdbtbs="-"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp="0.999000999001"
                     /psig="0.999000999001"
                     /xcortree=879
                     /SigmaFactorBS="aacacttttttatagcgctttcatcctagtctGGAATATatg
                     aaacagacaaGGTTACCCTAAAagtcacaagcacttattgaatatgacattaaaaagc
                     a"
                     /listShort="yfkQ"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(774452)
                     /Source="Nicolas_upshifts"
                     /id="U594"
                     /multdbtbs="-"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp="0.999000999001"
                     /psig="0.999000999001"
                     /xcortree=879
                     /SigmaFactorBS="aacacttttttatagcgctttcatcctagtctGGAATATatg
                     aaacagacaaGGTTACCCTAAAagtcacaagcacttattgaatatgacattaaaaagc
                     a"
                     /listShort="yfkQ"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(774474..774480)
                     /Source="Nicolas_upshift_promotors"
                     /id="U594"
                     /multdbtbs="-"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp="0.999000999001"
                     /psig="0.999000999001"
                     /xcortree=879
                     /SigmaFactorBS="aacacttttttatagcgctttcatcctagtctGGAATATatg
                     aaacagacaaGGTTACCCTAAAagtcacaagcacttattgaatatgacattaaaaagc
                     a"
                     /listShort="yfkQ"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-35    774509..774516
                     /Source="Nicolas_upshift_promotors"
                     /id="U595"
                     /multdbtbs="SigA"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.99100899100899"
                     /psig=1
                     /xcortree=1569
                     /SigmaFactorBS="tccagactaggatgaaagcgctataaaaaagTGTTGACTacc
                     tgtatatacagGAATACAATATGATTATAAGttgtatatacaagttataaaaacggat
                     a"
                     /listShort="treP, treA, treR, yfkO"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    774531..774550
                     /Source="Nicolas_upshift_promotors"
                     /id="U595"
                     /multdbtbs="SigA"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.99100899100899"
                     /psig=1
                     /xcortree=1569
                     /SigmaFactorBS="tccagactaggatgaaagcgctataaaaaagTGTTGACTacc
                     tgtatatacagGAATACAATATGATTATAAGttgtatatacaagttataaaaacggat
                     a"
                     /listShort="treP, treA, treR, yfkO"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        774538
                     /Source="Nicolas_upshifts"
                     /id="U595"
                     /multdbtbs="SigA"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.99100899100899"
                     /psig=1
                     /xcortree=1569
                     /SigmaFactorBS="tccagactaggatgaaagcgctataaaaaagTGTTGACTacc
                     tgtatatacagGAATACAATATGATTATAAGttgtatatacaagttataaaaacggat
                     a"
                     /listShort="treP, treA, treR, yfkO"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     downshifts      complement(774584)
                     /Source="Nicolas_upshifts"
                     /id="D386"
                     /incds=0
                     /nref=1
                     /ntot=29
                     /MaxReadThrough="1.35091"
                     /MaxDrop="3.57201"
                     /score="22.8661179"
                     /energy="-15.2"
                     /TU="NA"
                     /idTUdmin="U596"
                     /TUdmin=0
                     /isTUend="TRUE"
                     /label="downshifts"
     CDS             774592..776004
                     /gene="treP"
                     /locus_tag="BSU_07800"
                     /old_locus_tag="BSU07800"
                     /EC_number="2.7.1.201"
                     /function="16.1: Circulate"
                     /experiment="publication(s) with functional evidences,
                     PMID:15849754, 16850406, 8755887, 8917076, 8969503,
                     18977770"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 15849754, 16850406,
                     8755887, 8917076, 8969503, 18977770; Product type t :
                     transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphotransferase system (PTS)
                     trehalose-specific enzyme IIBC component"
                     /protein_id="NP_388661.1"
                     /db_xref="EnsemblGenomes-Gn:BSU07800"
                     /db_xref="EnsemblGenomes-Tr:CAB12609"
                     /db_xref="GOA:P39794"
                     /db_xref="InterPro:IPR001996"
                     /db_xref="InterPro:IPR003352"
                     /db_xref="InterPro:IPR004719"
                     /db_xref="InterPro:IPR011296"
                     /db_xref="InterPro:IPR013013"
                     /db_xref="InterPro:IPR018113"
                     /db_xref="InterPro:IPR036878"
                     /db_xref="SubtiList:BG11009"
                     /db_xref="UniProtKB/Swiss-Prot:P39794"
                     /translation="MGELNKSARQIVEAVGGAENIAAATHCVTRLRFALIDESKVDQE
                     MLDQIDVVKGSFSTNGQFQVVIGQGTVNKVYAELVKETGIGESTKDEVKKASEKNMNP
                     LQRAVKTLADIFIPILPAIVTAGLLMGINNILTAEGIFFSTKSIVQVYPQWADLANMI
                     NLIAGTAFTFLPALIGWSAVKRFGGNPLLGIVLGVMLVHPDLLNAWGYGAAEQSGEIP
                     VWNLFGLEVQKVGYQGQVLPILLASYMLAKIEVFLTKRTPEGIQLLVVAPITLLLTGF
                     ASFIIIGPITFAIGNVLTSGLISVFGSFAALGGLLYGGFYSALVITGMHHTFLAVDLQ
                     LIGSKLGGTFLWPMLALSNIAQGSAALAMMFIVKDEKQKGLSLTSGISAYLGITEPAI
                     FGVNLRYRFPFIIAMVSSGLAGMYISSQGVLASSVGVGGVPGIFSIMSQYWGAFAIGM
                     AIVLIVPFAGTYAYARFKHK*"
                     /label="treP CDS"
     gene            774592..776004
                     /gene="treP"
                     /locus_tag="BSU_07800"
                     /old_locus_tag="BSU07800"
                     /label="treP gene"
     promotor_no_box complement(774610..774710)
                     /Source="Nicolas_upshift_promotors"
                     /id="U596"
                     /multdbtbs="-"
                     /comp="M13"
                     /sig="Sig-"
                     /pcomp="0.66033966033966"
                     /psig="0.0889110889110889"
                     /xcortree=1570
                     /SigmaFactorBS="ttgctttcatctattaaagcaaaacgcaaacgtgtaacacaa
                     tgagttgccgctgcaatattttcagcaccgccgactgcttcgacaatctgacgtgccg
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_no_box"
     upshifts        complement(774650)
                     /Source="Nicolas_upshifts"
                     /id="U596"
                     /multdbtbs="-"
                     /comp="M13"
                     /sig="Sig-"
                     /pcomp="0.66033966033966"
                     /psig="0.0889110889110889"
                     /xcortree=1570
                     /SigmaFactorBS="ttgctttcatctattaaagcaaaacgcaaacgtgtaacacaa
                     tgagttgccgctgcaatattttcagcaccgccgactgcttcgacaatctgacgtgccg
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             776075..777760
                     /gene="treA"
                     /locus_tag="BSU_07810"
                     /old_locus_tag="BSU07810"
                     /EC_number="3.2.1.93"
                     /function="16.8: Protect"
                     /experiment="publication(s) with functional evidences,
                     PMID:7651129, 7751281, 8755887, 8917076, 9701821,
                     26894535"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 7651129, 7751281,
                     8755887, 8917076, 9701821, 26894535; Product type e :
                     enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="trehalose-6-phosphate hydrolase"
                     /protein_id="NP_388662.1"
                     /db_xref="EnsemblGenomes-Gn:BSU07810"
                     /db_xref="EnsemblGenomes-Tr:CAB12610"
                     /db_xref="GOA:P39795"
                     /db_xref="InterPro:IPR006047"
                     /db_xref="InterPro:IPR012769"
                     /db_xref="InterPro:IPR017853"
                     /db_xref="InterPro:IPR032091"
                     /db_xref="SubtiList:BG11010"
                     /db_xref="UniProtKB/Swiss-Prot:P39795"
                     /translation="MKTEQTPWWKKAVVYQIYPKSFNDTTGNGVGDLNGIIEKLDYLK
                     TLQVDVLWLTPIYDSPQHDNGYDIRDYYSIYPEYGTMEDFERLVSEAHKRDLKVVMDL
                     VVNHTSTEHKWFREAISSIDSPYRDFYIWKKPQENGSVPTNWESKFGGSAWELDEASG
                     QYYLHLFDVTQADLNWENEEVRKHVYDMMHFWFEKGIDGFRLDVINLISKDQRFPNAE
                     EGDGRSFYTDGPRVHEFLHEMNEKVFSHYDSMTVGEMSSTTVDHCIRYTNPDNKELDM
                     TFSFHHLKVDYPNGEKWALAPFDFLKLKEILSDWQTGMHAGGGWNALFWCNHDQPRVV
                     SRYGDDGAYRVKSAKMLATAIHMMQGTPYIYQGEELGMTNPKFTDISSYRDVESLNMY
                     HAFKEKGMADQDITAILQAKSRDNSRTPVQWDATENGGFTTGTPWIPVAGNYREINAE
                     AALRDQNSVFYHYQKLIQIRKMYDIVTEGTYEIIAKDDPNIFAYLRHGSNEKLLVINN
                     FYGTEAAFTLPDSLAPDEWKAEVLLTNDEAREGLQNMTLRPYESIVYRLTKPC*"
                     /label="treA CDS"
     gene            776075..777760
                     /gene="treA"
                     /locus_tag="BSU_07810"
                     /old_locus_tag="BSU07810"
                     /label="treA gene"
     promotor_-10    complement(776381..776396)
                     /Source="Nicolas_upshift_promotors"
                     /id="U597"
                     /multdbtbs="-"
                     /comp="M9"
                     /sig="SigWXY"
                     /pcomp=1
                     /psig=1
                     /xcortree=1694
                     /SigmaFactorBS="tacgggctgtctattgaagagatcgcctcgCGAAACCATTtg
                     tgctctgttgACGTATGATTGACAACaagatccatgacgactttcaggtctcttttat
                     g"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(776388)
                     /Source="Nicolas_upshifts"
                     /id="U597"
                     /multdbtbs="-"
                     /comp="M9"
                     /sig="SigWXY"
                     /pcomp=1
                     /psig=1
                     /xcortree=1694
                     /SigmaFactorBS="tacgggctgtctattgaagagatcgcctcgCGAAACCATTtg
                     tgctctgttgACGTATGATTGACAACaagatccatgacgactttcaggtctcttttat
                     g"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(776409..776418)
                     /Source="Nicolas_upshift_promotors"
                     /id="U597"
                     /multdbtbs="-"
                     /comp="M9"
                     /sig="SigWXY"
                     /pcomp=1
                     /psig=1
                     /xcortree=1694
                     /SigmaFactorBS="tacgggctgtctattgaagagatcgcctcgCGAAACCATTtg
                     tgctctgttgACGTATGATTGACAACaagatccatgacgactttcaggtctcttttat
                     g"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-35    777733..777737
                     /Source="Nicolas_upshift_promotors"
                     /id="U598"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.967032967032967"
                     /psig=1
                     /xcortree=2516
                     /SigmaFactorBS="ggcttcagaacatgacgcttcgcccatatgagtccatTGTTT
                     atcgtttaacgaaacCGTGTTAAACTAAGCTGGGTggtccataatgaaggtgaataaa
                     t"
                     /listShort="treR, yfkO"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    777753..777772
                     /Source="Nicolas_upshift_promotors"
                     /id="U598"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.967032967032967"
                     /psig=1
                     /xcortree=2516
                     /SigmaFactorBS="ggcttcagaacatgacgcttcgcccatatgagtccatTGTTT
                     atcgtttaacgaaacCGTGTTAAACTAAGCTGGGTggtccataatgaaggtgaataaa
                     t"
                     /listShort="treR, yfkO"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        777756
                     /Source="Nicolas_upshifts"
                     /id="U598"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.967032967032967"
                     /psig=1
                     /xcortree=2516
                     /SigmaFactorBS="ggcttcagaacatgacgcttcgcccatatgagtccatTGTTT
                     atcgtttaacgaaacCGTGTTAAACTAAGCTGGGTggtccataatgaaggtgaataaa
                     t"
                     /listShort="treR, yfkO"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             777781..778497
                     /gene="treR"
                     /locus_tag="BSU_07820"
                     /old_locus_tag="BSU07820"
                     /function="16.3: Control"
                     /experiment="publication(s) with functional evidences,
                     PMID:8755887, 9829827, 17705272"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 8755887, 9829827,
                     17705272; Product type r: regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator (TreR-trehalose)"
                     /protein_id="NP_388663.1"
                     /db_xref="EnsemblGenomes-Gn:BSU07820"
                     /db_xref="EnsemblGenomes-Tr:CAB12611"
                     /db_xref="GOA:P39796"
                     /db_xref="InterPro:IPR000524"
                     /db_xref="InterPro:IPR011663"
                     /db_xref="InterPro:IPR012770"
                     /db_xref="InterPro:IPR028978"
                     /db_xref="InterPro:IPR036388"
                     /db_xref="InterPro:IPR036390"
                     /db_xref="PDB:2OGG"
                     /db_xref="SubtiList:BG11011"
                     /db_xref="UniProtKB/Swiss-Prot:P39796"
                     /translation="MKVNKFITIYKDIAQQIEGGRWKAEEILPSEHELTAQYGTSRET
                     VRKALHMLAQNGYIQKIRGKGSVVLNREKMQFPVSGLVSFKELAQTLGKETKTTVHKF
                     GLEPPSELIQKQLRANLDDDIWEVIRSRKIDGEHVILDKDYFFRKHVPHLTKEICENS
                     IYEYIEGELGLSISYAQKEIVAEPCTDEDRELLDLRGYDHMVVVRNYVFLEDTSLFQY
                     TESRHRLDKFRFVDFARRGK*"
                     /label="treR CDS"
     gene            777781..778497
                     /gene="treR"
                     /locus_tag="BSU_07820"
                     /old_locus_tag="BSU07820"
                     /label="treR gene"
     downshifts      778490
                     /Source="Nicolas_upshifts"
                     /id="D387"
                     /incds=0
                     /nref=3
                     /ntot=115
                     /MaxReadThrough="6.58905"
                     /MaxDrop="4.05981"
                     /score="24.6748216"
                     /energy="-11.1"
                     /TU="U595,U598"
                     /idTUdmin="U595"
                     /TUdmin="-792"
                     /isTUend="FALSE"
                     /label="downshifts"
     promotor_-35    778572..778575
                     /Source="Nicolas_upshift_promotors"
                     /id="U599"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.432567432567433"
                     /psig="0.995004995004995"
                     /xcortree=611
                     /SigmaFactorBS="caaaattgatactatccaacaaaaatgtgcgtACTTttactt
                     tttatcataATGGCTACAATAGAGATGAGagtaatctaaaggagaggtgttttacatg
                     g"
                     /listShort="yfkO"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    778591..778610
                     /Source="Nicolas_upshift_promotors"
                     /id="U599"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.432567432567433"
                     /psig="0.995004995004995"
                     /xcortree=611
                     /SigmaFactorBS="caaaattgatactatccaacaaaaatgtgcgtACTTttactt
                     tttatcataATGGCTACAATAGAGATGAGagtaatctaaaggagaggtgttttacatg
                     g"
                     /listShort="yfkO"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        778600
                     /Source="Nicolas_upshifts"
                     /id="U599"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.432567432567433"
                     /psig="0.995004995004995"
                     /xcortree=611
                     /SigmaFactorBS="caaaattgatactatccaacaaaaatgtgcgtACTTttactt
                     tttatcataATGGCTACAATAGAGATGAGagtaatctaaaggagaggtgttttacatg
                     g"
                     /listShort="yfkO"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             778637..779302
                     /gene="hypO"
                     /locus_tag="BSU_07830"
                     /old_locus_tag="BSU07830"
                     /EC_number="1.5.1.39"
                     /function="16.11: Scavenge (Catabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:15252706, 20727918, 20862523, 22238377, 26415543"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 15252706, 20727918,
                     20862523, 22238377, 26415543; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-flavin oxidoreductase (nitroreductase)"
                     /protein_id="NP_388664.1"
                     /db_xref="EnsemblGenomes-Gn:BSU07830"
                     /db_xref="EnsemblGenomes-Tr:CAB12612"
                     /db_xref="GOA:O34475"
                     /db_xref="InterPro:IPR000415"
                     /db_xref="InterPro:IPR029479"
                     /db_xref="InterPro:IPR033878"
                     /db_xref="SubtiList:BG12931"
                     /db_xref="UniProtKB/Swiss-Prot:O34475"
                     /translation="MADLKTQILDAYNFRHATKEFDPNKKVSDSDFEFILETGRLSPS
                     SLGLEPWKFVVVQNPEFREKLREYTWGAQKQLPTASHFVLILARTAKDIKYNADYIKR
                     HLKEVKQMPQDVYEGYLSKTEEFQKNDLHLLESDRTLFDWASKQTYIALGNMMTAAAQ
                     IGVDSCPIEGFQYDHIHRILEEEGLLENGSFDISVMVAFGYRVRDPRPKTRSAVEDVV
                     KWV*"
                     /label="hypO CDS"
     gene            778637..779302
                     /gene="hypO"
                     /locus_tag="BSU_07830"
                     /old_locus_tag="BSU07830"
                     /label="hypO gene"
     downshifts      779283
                     /Source="Nicolas_upshifts"
                     /id="D388"
                     /incds=0
                     /nref=180
                     /ntot=269
                     /MaxReadThrough="0.70079"
                     /MaxDrop="6.77615"
                     /score="34.5750428"
                     /energy="-16.9"
                     /TU="NA"
                     /idTUdmin="U595"
                     /TUdmin=1
                     /isTUend="TRUE"
                     /label="downshifts"
     CDS             complement(779339..783727)
                     /gene="yfkN"
                     /locus_tag="BSU_07840"
                     /old_locus_tag="BSU07840"
                     /EC_number="3.1.4.16"
                     /EC_number="3.1.3.5"
                     /EC_number="3.1.3.6"
                     /function="16.11: Scavenge (Catabolism)"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 2a: Function from experimental evidences
                     in other organisms; PubMedId: 14688230, 16291680,
                     21800427, 21906378, 25355936; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="exported 2',3'-cyclic-nucleotide
                     2'-phosphodiesterase, 2' (or 3') nucleotidase and 5'
                     nucleotidase"
                     /protein_id="NP_388665.1"
                     /db_xref="EnsemblGenomes-Gn:BSU07840"
                     /db_xref="EnsemblGenomes-Tr:CAB12613"
                     /db_xref="GOA:O34313"
                     /db_xref="InterPro:IPR004843"
                     /db_xref="InterPro:IPR006146"
                     /db_xref="InterPro:IPR006179"
                     /db_xref="InterPro:IPR008334"
                     /db_xref="InterPro:IPR029052"
                     /db_xref="InterPro:IPR036907"
                     /db_xref="PDB:3GVE"
                     /db_xref="SubtiList:BG12930"
                     /db_xref="UniProtKB/Swiss-Prot:O34313"
                     /translation="MRIQKRRTHVENILRILLPPIMILSLILPTPPIHAEESAAPQVH
                     LSILATTDIHANMMDYDYYSDKETADFGLARTAQLIQKHREQNPNTLLVDNGDLIQGN
                     PLGEYAVKYQKDDIISGTKTHPIISVMNALKYDAGTLGNHEFNYGLDFLDGTIKGADF
                     PIVNANVKTTSGENRYTPYVINEKTLIDENGNEQKVKVGYIGFVPPQIMTWDKKNLEG
                     QVQVQDIVESANETIPKMKAEGADVIIALAHTGIEKQAQSSGAENAVFDLATKTKGID
                     AIISGHQHGLFPSAEYAGVAQFNVEKGTINGIPVVMPSSWGKYLGVIDLKLEKADGSW
                     KVADSKGSIESIAGNVTSRNETVTNTIQQTHQNTLEYVRKPVGKTEADINSFFAQVKD
                     DPSIQIVTDAQKWYAEKEMKDTEYKNLPILSAGAPFKAGGRNGANYYTNIPAGDLAIK
                     NVGDLYLYDNTVQIVKLTGSEVKDWLEMSAGQFNQIDPAKGGDQALLNENFRSYNFDV
                     IDGVTYQVDVTKPAKYNENGKVINADSSRIINLSYEGKPISPSQEFLVVTNNYRASGG
                     GGFPHLTSDKIVHGSAVENRQVLMDYIIEQKTVNPKADNNWSIAPVSGTNLTFESSLL
                     AKPFADKADDVAYVGKSANEGYGVYKLQFDDDSNPDPPKDGLWDLTVMHTNDTHAHLD
                     DAARRMTKINEVRSETNHNILLDAGDVFSGDLYFTKWNGLADLKMMNMMGYDAMTFGN
                     HEFDKGPTVLSDFLSGNSATVDPANRYHFEAPEFPIVSANVDVSNEPKLKSFVKKPQT
                     FTAGEKKEAGIHPYILLDVDGEKVAVFGLTTEDTATTSSPGKSIVFNDAFETAQNTVK
                     AIQEEEKVNKIIALTHIGHNRDLELAKKVKGIDLIIGGHTHTLVDKMEVVNNEEPTIV
                     AQAKEYGQFLGRVDVAFDEKGVVQTDKSNLSVLPIDEHTEENPEAKQELDQFKNELED
                     VKNEKVGYTDVALDGQREHVRTKETNLGNFIADGMLAKAKEAAGARIAITNGGGIRAG
                     IDKGDITLGEVLNVMPFGNTLYVADLTGKQIKEALEQGLSNVENGGGAFPQVAGIEYT
                     FTLNNKPGHRVLEVKIESPNGDKVAINTDDTYRVATNNFVGAGGDGYSVFTEASHGED
                     LGYVDYEIFTEQLKKLGNKVSPKVEGRIKEVFLPTKQKDGSWTLDEDKFAIYAKNANT
                     PFVYYGIHEGSQEKPINLKVKKDQVKLLKERESDPSLTMFNYWYSMKMPMANLKTADT
                     AIGIKSTGELDVSLSDVYDFTVKQKGKEIKSFKEPVQLSLRMFDIEEAHNPAIYHVDR
                     KKKAFTKTGHGSVDDDMVTGYTNHFSEYTILNSGSNNKPPAFPSDQPTGGDDGNHGGG
                     SDKPGGKQPTDGNGGNDTPPGTQPTNGSGGNGSGGSGTDGPAGGLLPDTATSMYSILL
                     AGFLISALGTAMYLHQRRKQNRANQA*"
                     /label="yfkN CDS"
     gene            complement(779339..783727)
                     /gene="yfkN"
                     /locus_tag="BSU_07840"
                     /old_locus_tag="BSU07840"
                     /label="yfkN gene"
     downshifts      complement(779358)
                     /Source="Nicolas_upshifts"
                     /id="D389"
                     /incds=0
                     /nref=155
                     /ntot=229
                     /MaxReadThrough="1.00159"
                     /MaxDrop="7.08591"
                     /score="22.8661179"
                     /energy="-15.2"
                     /TU="NA"
                     /idTUdmin="U600"
                     /TUdmin=0
                     /isTUend="TRUE"
                     /label="downshifts"
     promotor_-10    complement(783760..783779)
                     /Source="Nicolas_upshift_promotors"
                     /id="U600"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.944055944055944"
                     /psig="0.994005994005994"
                     /xcortree=462
                     /SigmaFactorBS="actcatttttctcccttttacaataatcataaagaaacacCT
                     ACaaatagttacaaaaTATTCTTACAATAGGAGCTGtaacacaaatttcgttgaaagg
                     t"
                     /listShort="yfkN"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(783777)
                     /Source="Nicolas_upshifts"
                     /id="U600"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.944055944055944"
                     /psig="0.994005994005994"
                     /xcortree=462
                     /SigmaFactorBS="actcatttttctcccttttacaataatcataaagaaacacCT
                     ACaaatagttacaaaaTATTCTTACAATAGGAGCTGtaacacaaatttcgttgaaagg
                     t"
                     /listShort="yfkN"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(783794..783797)
                     /Source="Nicolas_upshift_promotors"
                     /id="U600"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.944055944055944"
                     /psig="0.994005994005994"
                     /xcortree=462
                     /SigmaFactorBS="actcatttttctcccttttacaataatcataaagaaacacCT
                     ACaaatagttacaaaaTATTCTTACAATAGGAGCTGtaacacaaatttcgttgaaagg
                     t"
                     /listShort="yfkN"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-35    783904..783910
                     /Source="Nicolas_upshift_promotors"
                     /id="U601"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp=1
                     /psig=1
                     /xcortree=231
                     /SigmaFactorBS="tgggcatttatgcttatcgtttgtcacaatcgcggaaTGTTT
                     ATtttagtgtggctgGGGTAGAGTGTTTTATGTAgacatataaagcgggaggttatga
                     a"
                     /listShort="yfkM, S273, yfkJ, yfkI, yfkH, S275"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    783924..783942
                     /Source="Nicolas_upshift_promotors"
                     /id="U601"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp=1
                     /psig=1
                     /xcortree=231
                     /SigmaFactorBS="tgggcatttatgcttatcgtttgtcacaatcgcggaaTGTTT
                     ATtttagtgtggctgGGGTAGAGTGTTTTATGTAgacatataaagcgggaggttatga
                     a"
                     /listShort="yfkM, S273, yfkJ, yfkI, yfkH, S275"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        783927
                     /Source="Nicolas_upshifts"
                     /id="U601"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp=1
                     /psig=1
                     /xcortree=231
                     /SigmaFactorBS="tgggcatttatgcttatcgtttgtcacaatcgcggaaTGTTT
                     ATtttagtgtggctgGGGTAGAGTGTTTTATGTAgacatataaagcgggaggttatga
                     a"
                     /listShort="yfkM, S273, yfkJ, yfkI, yfkH, S275"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             783970..784488
                     /gene="sufLB"
                     /locus_tag="BSU_07850"
                     /old_locus_tag="BSU07850"
                     /function="16.6: Maintain"
                     /function="16.8: Protect"
                     /experiment="publication(s) with functional evidences,
                     PMID:10220166, 12354229, 16181642, 17257049, 17933887,
                     24330391, 25283443, 25561404"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 10220166, 12354229,
                     16181642, 17257049, 17933887, 24330391, 25283443,
                     25561404; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="general stress protein 18; deglycase"
                     /protein_id="NP_388666.1"
                     /db_xref="EnsemblGenomes-Gn:BSU07850"
                     /db_xref="EnsemblGenomes-Tr:CAB12614"
                     /db_xref="GOA:P80876"
                     /db_xref="InterPro:IPR002818"
                     /db_xref="InterPro:IPR006286"
                     /db_xref="InterPro:IPR029062"
                     /db_xref="SubtiList:BG12929"
                     /db_xref="UniProtKB/Swiss-Prot:P80876"
                     /translation="MGKKIAVVLTYYFEDSEYTEPAKAFKEAGHELTVIEKEKGKTVK
                     GKQGTAEVTVDASIDDVNSSDFDALLIPGGFSPDQLRADDRFVQFTKAFMTDKKPVFA
                     ICHGPQLLINAKALDGRKATGYTSIRVDMENAGADVVDKEVVVCQDQLVTSRTPDDIP
                     AFNRESLALLEK*"
                     /label="sufLB CDS"
     gene            783970..784488
                     /gene="sufLB"
                     /locus_tag="BSU_07850"
                     /old_locus_tag="BSU07850"
                     /label="sufLB gene"
     downshifts      784474
                     /Source="Nicolas_upshifts"
                     /id="D390"
                     /incds=0
                     /nref=35
                     /ntot=153
                     /MaxReadThrough="8.02255"
                     /MaxDrop="6.97573"
                     /score="42.2080398"
                     /energy="-12.9"
                     /TU="U601"
                     /idTUdmin="U601"
                     /TUdmin="-3542"
                     /isTUend="FALSE"
                     /label="downshifts"
     downshifts      complement(784518)
                     /Source="Nicolas_upshifts"
                     /id="D391"
                     /incds=0
                     /nref=22
                     /ntot=199
                     /MaxReadThrough="1.59285"
                     /MaxDrop="3.61098"
                     /score="31.1923457"
                     /energy="-11.1"
                     /TU="NA"
                     /idTUdmin="U602"
                     /TUdmin=10
                     /isTUend="TRUE"
                     /label="downshifts"
     S_feature       784519..786169
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_860294_861944"
                     /HighExp="Etha, S6, S8, S5, S7, Gly, Salt, LoTm, S4,
                     Diami"
                     /AntisenseName="yfkL"
                     /AntisenseCor="-0.52109661167911703"
                     /AntisenseRegPval="-19.399999999999999"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigB"
                     /TUshortPSig=1
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S273"
     CDS             complement(784528..785718)
                     /gene="yfkL"
                     /locus_tag="BSU_07860"
                     /old_locus_tag="BSU07860"
                     /function="16.1: Circulate"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 2a: Function from experimental evidences
                     in other organisms; PubMedId: 15849754, 16828913,
                     16850406; Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="efflux transporter"
                     /protein_id="NP_388667.1"
                     /db_xref="EnsemblGenomes-Gn:BSU07860"
                     /db_xref="EnsemblGenomes-Tr:CAB12615"
                     /db_xref="GOA:O34597"
                     /db_xref="InterPro:IPR005829"
                     /db_xref="InterPro:IPR011701"
                     /db_xref="InterPro:IPR020846"
                     /db_xref="InterPro:IPR036259"
                     /db_xref="SubtiList:BG12928"
                     /db_xref="UniProtKB/Swiss-Prot:O34597"
                     /translation="MQTTSIKTASGMYINYFFLGMVNIILASNMSSLTKQWNTDPTGI
                     SYVIAAIGFGKLLTYGISGVLSDKIGRKPLVVASAGIMAVFLVGIPLSPSYELAFVFA
                     LLAGVANSAMDAGTYPALTELFPSASGSANVLVKAFMSVGAALLPLLITFLADHSMFY
                     GFAFYLPAAVYLLNIIYLSTLSFPKKHKKPTNSGQQESPVFLSEPVFQKEGTALIIIG
                     FTSTALFTVSQIWLPSYAQKAAGLAESASVQLLSYYSIGSLASVLLLAVLLNRWVKPV
                     FITLLYPIITLCTLAVMLTVHIPVVLDITAFFLGFSTAGVFQITITLMTELFWKRKGT
                     VTGIVATASSLASILLPIATGLIAKAGGIAHIFIFDFGIAVIGTAAAAFLYYRYKKLT
                     GAQA*"
                     /label="yfkL CDS"
     gene            complement(784528..785718)
                     /gene="yfkL"
                     /locus_tag="BSU_07860"
                     /old_locus_tag="BSU07860"
                     /label="yfkL gene"
     S_feature       complement(785719..785810)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_861494_861585_c"
                     /HighExp="C90, MG 10, BMM, MG-0.2, MG t5, MG 5, MG-0.1,
                     UNK1, HPh, LPh"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.994"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S274"
     CDS             complement(785811..786026)
                     /gene="yfkK"
                     /locus_tag="BSU_07870"
                     /old_locus_tag="BSU07870"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved hypothetical protein"
                     /protein_id="NP_388668.1"
                     /db_xref="EnsemblGenomes-Gn:BSU07870"
                     /db_xref="EnsemblGenomes-Tr:CAB12616"
                     /db_xref="InterPro:IPR009507"
                     /db_xref="SubtiList:BG12927"
                     /db_xref="UniProtKB/Swiss-Prot:O35019"
                     /translation="MSSPNTETLTQMIEEISQKLNMLNVGVIKAEDFSDEKIEDLTYL
                     HRMVMKKESFSPSEMQAIAQELASLRK*"
                     /label="yfkK CDS"
     gene            complement(785811..786026)
                     /gene="yfkK"
                     /locus_tag="BSU_07870"
                     /old_locus_tag="BSU07870"
                     /label="yfkK gene"
     downshifts      complement(785870)
                     /Source="Nicolas_upshifts"
                     /id="D392"
                     /incds=0
                     /nref=1
                     /ntot=131
                     /MaxReadThrough="3.65318"
                     /MaxDrop="2.45155"
                     /score="16.183887"
                     /energy="-11.6"
                     /TU="U602"
                     /idTUdmin="U602"
                     /TUdmin="-1342"
                     /isTUend="FALSE"
                     /label="downshifts"
     promotor_-10    complement(786058..786077)
                     /Source="Nicolas_upshift_promotors"
                     /id="U602"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.593406593406593"
                     /psig="0.994005994005994"
                     /xcortree=3074
                     /SigmaFactorBS="tcacttttttggaatgaacagcctgcttttagaatagggTTt
                     ttttctgatggaaTTCTGTTAGAATAAAACATAcctatattgcgcatagaaaggatgg
                     a"
                     /listShort="yfkK, S274, yfkL"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(786072)
                     /Source="Nicolas_upshifts"
                     /id="U602"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.593406593406593"
                     /psig="0.994005994005994"
                     /xcortree=3074
                     /SigmaFactorBS="tcacttttttggaatgaacagcctgcttttagaatagggTTt
                     ttttctgatggaaTTCTGTTAGAATAAAACATAcctatattgcgcatagaaaggatgg
                     a"
                     /listShort="yfkK, S274, yfkL"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(786092..786093)
                     /Source="Nicolas_upshift_promotors"
                     /id="U602"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.593406593406593"
                     /psig="0.994005994005994"
                     /xcortree=3074
                     /SigmaFactorBS="tcacttttttggaatgaacagcctgcttttagaatagggTTt
                     ttttctgatggaaTTCTGTTAGAATAAAACATAcctatattgcgcatagaaaggatgg
                     a"
                     /listShort="yfkK, S274, yfkL"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-35    786139..786146
                     /Source="Nicolas_upshift_promotors"
                     /id="U603"
                     /multdbtbs="SigA"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.82017982017982"
                     /psig="0.994005994005994"
                     /xcortree=134
                     /SigmaFactorBS="gctgttcattccaaaaaagtgaagacatCAGTTGAAaagaaa
                     atgaacatCCTACTAAGATATTCATGAAggtttctttttagagaaataggggcaaaga
                     a"
                     /listShort="yfkJ, yfkI, yfkH, S275"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    786161..786180
                     /Source="Nicolas_upshift_promotors"
                     /id="U603"
                     /multdbtbs="SigA"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.82017982017982"
                     /psig="0.994005994005994"
                     /xcortree=134
                     /SigmaFactorBS="gctgttcattccaaaaaagtgaagacatCAGTTGAAaagaaa
                     atgaacatCCTACTAAGATATTCATGAAggtttctttttagagaaataggggcaaaga
                     a"
                     /listShort="yfkJ, yfkI, yfkH, S275"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        786171
                     /Source="Nicolas_upshifts"
                     /id="U603"
                     /multdbtbs="SigA"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.82017982017982"
                     /psig="0.994005994005994"
                     /xcortree=134
                     /SigmaFactorBS="gctgttcattccaaaaaagtgaagacatCAGTTGAAaagaaa
                     atgaacatCCTACTAAGATATTCATGAAggtttctttttagagaaataggggcaaaga
                     a"
                     /listShort="yfkJ, yfkI, yfkH, S275"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             786229..786699
                     /gene="yfkJ"
                     /locus_tag="BSU_07880"
                     /old_locus_tag="BSU07880"
                     /EC_number="3.1.3.48"
                     /function="16.8: Protect"
                     /function="16.3: Control"
                     /experiment="publication(s) with functional evidences,
                     PMID:15995210"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 15995210; Product type e:
                     enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="protein-tyrosine-phosphatase"
                     /protein_id="NP_388669.1"
                     /db_xref="EnsemblGenomes-Gn:BSU07880"
                     /db_xref="EnsemblGenomes-Tr:CAB12617"
                     /db_xref="GOA:O35016"
                     /db_xref="InterPro:IPR017867"
                     /db_xref="InterPro:IPR023485"
                     /db_xref="InterPro:IPR036196"
                     /db_xref="PDB:4ETM"
                     /db_xref="SubtiList:BG12926"
                     /db_xref="UniProtKB/Swiss-Prot:O35016"
                     /translation="MISVLFVCLGNICRSPMAEAIFRDLAAKKGLEGKIKADSAGIGG
                     WHIGNPPHEGTQEILRREGISFDGMLARQVSEQDLDDFDYIIAMDAENIGSLRSMAGF
                     KNTSHIKRLLDYVEDSDLADVPDPYYTGNFEEVCQLIKTGCEQLLASIQKEKQL*"
                     /label="yfkJ CDS"
     gene            786229..786699
                     /gene="yfkJ"
                     /locus_tag="BSU_07880"
                     /old_locus_tag="BSU07880"
                     /label="yfkJ gene"
     CDS             786717..787037
                     /gene="yfkI"
                     /locus_tag="BSU_07890"
                     /old_locus_tag="BSU07890"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms; PubMedId: 15995210"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved hypothetical protein"
                     /protein_id="NP_388670.1"
                     /db_xref="EnsemblGenomes-Gn:BSU07890"
                     /db_xref="EnsemblGenomes-Tr:CAB12618"
                     /db_xref="SubtiList:BG12925"
                     /db_xref="UniProtKB/Swiss-Prot:O34418"
                     /translation="MNNERLMLKGIFLGAAAGAALSLLHKPTRQACGMRWLTCKHKLS
                     LYKSNPELLKNTVITKVDEAKKLARTLSKEVDFVNQQVKELKKTTPQVMELVQETKEH
                     FSKK*"
                     /label="yfkI CDS"
     gene            786717..787037
                     /gene="yfkI"
                     /locus_tag="BSU_07890"
                     /old_locus_tag="BSU07890"
                     /label="yfkI gene"
     CDS             787061..787888
                     /gene="rbn"
                     /locus_tag="BSU_07900"
                     /old_locus_tag="BSU07900"
                     /function="16.3: Control"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 11222749, 12794188,
                     15849754, 16850406, 15764599; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative ribonuclease BN"
                     /protein_id="NP_388671.1"
                     /db_xref="EnsemblGenomes-Gn:BSU07900"
                     /db_xref="EnsemblGenomes-Tr:CAB12619"
                     /db_xref="GOA:O34437"
                     /db_xref="InterPro:IPR017039"
                     /db_xref="SubtiList:BG12924"
                     /db_xref="UniProtKB/Swiss-Prot:O34437"
                     /translation="MSFLKELFSRYTLHEGQSKSAELAYFFLLSLFPFLIFMLTLTAY
                     LPLSTDDVLGVIEQYAPASAMSLVESITHQTLNNRNGGLLSFGIIAALWSASNGMNAI
                     VRSLNHAYDVEENRSFIIVRLTSIFLTIAMVFTILVALLLPVFGREIGRLASDFVGAS
                     DLFLSVWAAIRWGVSPLVLLIVFSALYVIAPNKKLSLRFVMPGAVFATIGWIIVSTLF
                     SFYVSTFANYSATYGSIGGIIVLMIWFYLSGILIILGGEINALLHKRKKLPDENPYH*
                     "
                     /label="rbn CDS"
     gene            787061..787888
                     /gene="rbn"
                     /locus_tag="BSU_07900"
                     /old_locus_tag="BSU07900"
                     /label="rbn gene"
     promotor_-35    787867..787873
                     /Source="Nicolas_upshift_promotors"
                     /id="U604"
                     /multdbtbs="-"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp="0.974025974025974"
                     /psig="0.974025974025974"
                     /xcortree=847
                     /SigmaFactorBS="acataaacgtaaaaagcttccTGATGAAaatccctaccatta
                     GCGCACCCTATAaacgaacttcggttcaaaaagaagtcggggggatatcgtgatgacc
                     a"
                     /listShort="S275"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    787888..787899
                     /Source="Nicolas_upshift_promotors"
                     /id="U604"
                     /multdbtbs="-"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp="0.974025974025974"
                     /psig="0.974025974025974"
                     /xcortree=847
                     /SigmaFactorBS="acataaacgtaaaaagcttccTGATGAAaatccctaccatta
                     GCGCACCCTATAaacgaacttcggttcaaaaagaagtcggggggatatcgtgatgacc
                     a"
                     /listShort="S275"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     S_feature       787906..788062
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_863681_863837"
                     /HighExp="S8, Etha, S6, Salt, S7, S5, ferm, nit, BT, Sw"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="0.99976299999999996"
                     /TUshortSig="SigGF, SigA, SigB"
                     /TUshortPSig="0.974, 0.994, 1"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S275"
     upshifts        787906
                     /Source="Nicolas_upshifts"
                     /id="U604"
                     /multdbtbs="-"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp="0.974025974025974"
                     /psig="0.974025974025974"
                     /xcortree=847
                     /SigmaFactorBS="acataaacgtaaaaagcttccTGATGAAaatccctaccatta
                     GCGCACCCTATAaacgaacttcggttcaaaaagaagtcggggggatatcgtgatgacc
                     a"
                     /listShort="S275"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     downshifts      complement(787938)
                     /Source="Nicolas_upshifts"
                     /id="D393"
                     /incds=0
                     /nref=1
                     /ntot=4
                     /MaxReadThrough="1.22239"
                     /MaxDrop="3.61507"
                     /score="-5.45682213"
                     /energy="-3"
                     /TU="NA"
                     /idTUdmin="U606"
                     /TUdmin=440
                     /isTUend="FALSE"
                     /label="downshifts"
     downshifts      788037
                     /Source="Nicolas_upshifts"
                     /id="D394"
                     /incds=0
                     /nref=144
                     /ntot=253
                     /MaxReadThrough="1.4253"
                     /MaxDrop="6.85849"
                     /score="25.8200126"
                     /energy="-17.9"
                     /TU="NA"
                     /idTUdmin="U603"
                     /TUdmin="-1"
                     /isTUend="TRUE"
                     /label="downshifts"
     CDS             complement(788087..789262)
                     /gene="yfkF"
                     /locus_tag="BSU_07910"
                     /old_locus_tag="BSU07910"
                     /function="16.1: Circulate"
                     /function="16.8: Protect"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 15849754, 16850406;
                     Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="putative efflux transporter"
                     /protein_id="NP_388672.1"
                     /db_xref="EnsemblGenomes-Gn:BSU07910"
                     /db_xref="EnsemblGenomes-Tr:CAB12620"
                     /db_xref="GOA:O34929"
                     /db_xref="InterPro:IPR011701"
                     /db_xref="InterPro:IPR020846"
                     /db_xref="InterPro:IPR036259"
                     /db_xref="SubtiList:BG12923"
                     /db_xref="UniProtKB/Swiss-Prot:O34929"
                     /translation="MSRFHFFILVLLVSISGFSQGMLLPVISIIFETNGESAAINGLH
                     ATGLYIGVLLASPFMEAPLRKLGFKPLIVMGGSIVILSLFGFIWLQSVWVWFLLRLFI
                     GIGDHMLHFSTQTWVTSMSSKQNRGRNLSIYGLSFGLGFAAGPFMVPLVKLSPSLPFI
                     VSGCISLFAWLFVFFLQNAYPETSPHETKSDNSFRRFYQAMLFGWVAFMPTFGYGFLE
                     TALNGSFPVYALRLGISVDAVAIILPAFAIGSIIFQFPLGILSDKYGRRNVLLVILLT
                     GALCFFIAGVFPSPYVIGGCFFIAGMAVGSTFTLGISYMTDLLPPHLLPAGNLLCGIT
                     FSLGSILGPVAGGWYMQTFESANLFYFITLTLSSVWLALVLGKPKSWSPAETYSSSS*
                     "
                     /label="yfkF CDS"
     gene            complement(788087..789262)
                     /gene="yfkF"
                     /locus_tag="BSU_07910"
                     /old_locus_tag="BSU07910"
                     /label="yfkF gene"
     downshifts      complement(788092)
                     /Source="Nicolas_upshifts"
                     /id="D395"
                     /incds=0
                     /nref=1
                     /ntot=97
                     /MaxReadThrough="0.37084"
                     /MaxDrop="3.28031"
                     /score="3.2266059"
                     /energy="-14.1"
                     /TU="NA"
                     /idTUdmin="U606"
                     /TUdmin=286
                     /isTUend="FALSE"
                     /label="downshifts"
     promotor_-35    788699..788705
                     /Source="Nicolas_upshift_promotors"
                     /id="U605"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp=1
                     /psig=1
                     /xcortree=204
                     /SigmaFactorBS="cctgataaaatcgcctgaaactattgtctgatttGGTTTCAt
                     gaggactggtttccGGGTATGCATTTTGTAGAAagaaaacaaaaagccacgcaaacag
                     a"
                     /listShort="S276, yfkE, yfkD"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    788721..788739
                     /Source="Nicolas_upshift_promotors"
                     /id="U605"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp=1
                     /psig=1
                     /xcortree=204
                     /SigmaFactorBS="cctgataaaatcgcctgaaactattgtctgatttGGTTTCAt
                     gaggactggtttccGGGTATGCATTTTGTAGAAagaaaacaaaaagccacgcaaacag
                     a"
                     /listShort="S276, yfkE, yfkD"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     S_feature       788725..789378
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_864500_865153"
                     /HighExp="Etha, M9-stat, Salt, Sw, Gly, B60, Heat, LPhT,
                     HiTm, T0.30H"
                     /AntisenseName="yfkF"
                     /AntisenseCor="-0.18505347560608301"
                     /AntisenseRegPval="-2.6"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigB"
                     /TUshortPSig=1
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S276"
     upshifts        788725
                     /Source="Nicolas_upshifts"
                     /id="U605"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp=1
                     /psig=1
                     /xcortree=204
                     /SigmaFactorBS="cctgataaaatcgcctgaaactattgtctgatttGGTTTCAt
                     gaggactggtttccGGGTATGCATTTTGTAGAAagaaaacaaaaagccacgcaaacag
                     a"
                     /listShort="S276, yfkE, yfkD"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-10    complement(789287..789306)
                     /Source="Nicolas_upshift_promotors"
                     /id="U606"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.74925074925075"
                     /psig=1
                     /xcortree=3138
                     /SigmaFactorBS="gagggcaaatgtatagcgtgatataggcttttttcAGGTTGC
                     CtgcttttggaaaaCGTTGTACGATCAACATAGAttccatataaggagaactgacacg
                     a"
                     /listShort="yfkF"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(789302)
                     /Source="Nicolas_upshifts"
                     /id="U606"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.74925074925075"
                     /psig=1
                     /xcortree=3138
                     /SigmaFactorBS="gagggcaaatgtatagcgtgatataggcttttttcAGGTTGC
                     CtgcttttggaaaaCGTTGTACGATCAACATAGAttccatataaggagaactgacacg
                     a"
                     /listShort="yfkF"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(789320..789327)
                     /Source="Nicolas_upshift_promotors"
                     /id="U606"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.74925074925075"
                     /psig=1
                     /xcortree=3138
                     /SigmaFactorBS="gagggcaaatgtatagcgtgatataggcttttttcAGGTTGC
                     CtgcttttggaaaaCGTTGTACGATCAACATAGAttccatataaggagaactgacacg
                     a"
                     /listShort="yfkF"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-35    789368..789373
                     /Source="Nicolas_upshift_promotors"
                     /id="U607"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.848151848151848"
                     /psig="0.848151848151848"
                     /xcortree=1179
                     /SigmaFactorBS="ggcaacctgaaaaaagcctatatcacgctatacatttgccct
                     cgtgtaATCATGaaggtttttgtgaaGAATAAAAATAAAACAAGTcataaaaaaggag
                     c"
                     /listShort="yfkE"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     upshifts        789380
                     /Source="Nicolas_upshifts"
                     /id="U607"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.848151848151848"
                     /psig="0.848151848151848"
                     /xcortree=1179
                     /SigmaFactorBS="ggcaacctgaaaaaagcctatatcacgctatacatttgccct
                     cgtgtaATCATGaaggtttttgtgaaGAATAAAAATAAAACAAGTcataaaaaaggag
                     c"
                     /listShort="yfkE"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-10    789388..789406
                     /Source="Nicolas_upshift_promotors"
                     /id="U607"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.848151848151848"
                     /psig="0.848151848151848"
                     /xcortree=1179
                     /SigmaFactorBS="ggcaacctgaaaaaagcctatatcacgctatacatttgccct
                     cgtgtaATCATGaaggtttttgtgaaGAATAAAAATAAAACAAGTcataaaaaaggag
                     c"
                     /listShort="yfkE"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     CDS             789430..790485
                     /gene="chaA"
                     /locus_tag="BSU_07920"
                     /old_locus_tag="BSU07920"
                     /function="16.8: Protect"
                     /function="16.1: Circulate"
                     /experiment="publication(s) with functional evidences,
                     PMID:15849754, 16850406, 19543710, 23798403"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 15849754, 16850406,
                     19543710, 23798403; Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="H+/Ca2+ antiporter"
                     /protein_id="NP_388673.1"
                     /db_xref="EnsemblGenomes-Gn:BSU07920"
                     /db_xref="EnsemblGenomes-Tr:CAB12621"
                     /db_xref="GOA:O34840"
                     /db_xref="InterPro:IPR004713"
                     /db_xref="InterPro:IPR004798"
                     /db_xref="InterPro:IPR004837"
                     /db_xref="PDB:4KJR"
                     /db_xref="PDB:4KJS"
                     /db_xref="SubtiList:BG12922"
                     /db_xref="UniProtKB/Swiss-Prot:O34840"
                     /translation="MNRIFFILVAAGVPLSVIGSLMHWPSAVLFAVYCVTIIALASYM
                     GRATESLSIIAGPRIGGLLNATFGNAVELIISLFALKEGLTGIVLASLTGSVLGNLLL
                     VAGLSFFVGGLKYKRQEFNIHDARHNSGLLIFAIIVAFVIPEVFSVGMGNASKLNLSI
                     GISIIMILLYVAALYFKLVTHRGVYQPNNAAQTEEEEEPEWSGKVATIVLFAATIVVA
                     YISENLVHTFHSVAEQFGWSELFIGVIIVAIVGNAAEHASAIIMAFKNKMDIAVEIAV
                     GSTLQIAMFVAPVLVICSIFFPTSMPLVFTLPELVAMVSAVLLMIAISNDGDSNWFEG
                     ATLLAAYVIMAIGFFLL*"
                     /label="chaA CDS"
     gene            789430..790485
                     /gene="chaA"
                     /locus_tag="BSU_07920"
                     /old_locus_tag="BSU07920"
                     /label="chaA gene"
     promotor_-35    790499..790505
                     /Source="Nicolas_upshift_promotors"
                     /id="U608"
                     /multdbtbs="-"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp=1
                     /psig=1
                     /xcortree=931
                     /SigmaFactorBS="gatcggctttttccttctttaacctgaaaaaatgaTGGATAA
                     caacaaagcgggatGAAAAGACTAAGggaaaatgccatagaaagagtgatatgatgaa
                     a"
                     /listShort="yfkD"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    790520..790531
                     /Source="Nicolas_upshift_promotors"
                     /id="U608"
                     /multdbtbs="-"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp=1
                     /psig=1
                     /xcortree=931
                     /SigmaFactorBS="gatcggctttttccttctttaacctgaaaaaatgaTGGATAA
                     caacaaagcgggatGAAAAGACTAAGggaaaatgccatagaaagagtgatatgatgaa
                     a"
                     /listShort="yfkD"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        790524
                     /Source="Nicolas_upshifts"
                     /id="U608"
                     /multdbtbs="-"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp=1
                     /psig=1
                     /xcortree=931
                     /SigmaFactorBS="gatcggctttttccttctttaacctgaaaaaatgaTGGATAA
                     caacaaagcgggatGAAAAGACTAAGggaaaatgccatagaaagagtgatatgatgaa
                     a"
                     /listShort="yfkD"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             790556..791350
                     /gene="yfkD"
                     /locus_tag="BSU_07930"
                     /old_locus_tag="BSU07930"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms; PubMedId: 19543710"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved hypothetical protein"
                     /protein_id="NP_388674.1"
                     /db_xref="EnsemblGenomes-Gn:BSU07930"
                     /db_xref="EnsemblGenomes-Tr:CAB12622"
                     /db_xref="InterPro:IPR025548"
                     /db_xref="SubtiList:BG12921"
                     /db_xref="UniProtKB/Swiss-Prot:O34579"
                     /translation="MMKKLFHSTLIVLLFFSFFGVQPIHAKKQFKVPNSVASISKENT
                     YPNASQDQPMLQPSKLAKELLDHSEVKIENPHLIKMLNESNISGTPLAVGYRATIFLG
                     KWALGYESNETVANWEYKKINTNRADNRGGKETAEMHYAQEQQYRVKGGLTAKVPNAE
                     DVKSMMMQKAMKKTNLPLAFETVIGAGTKRDQIYKVAPKKIGYLHAYAPAVNEKGKVT
                     YGEVYLVLKGNKRKLVVKNVTSQGIGAWIPVQDHVTFGFQLSSLPR*"
                     /label="yfkD CDS"
     gene            790556..791350
                     /gene="yfkD"
                     /locus_tag="BSU_07930"
                     /old_locus_tag="BSU07930"
                     /label="yfkD gene"
     downshifts      791338
                     /Source="Nicolas_upshifts"
                     /id="D396"
                     /incds=0
                     /nref=41
                     /ntot=100
                     /MaxReadThrough="0.82657"
                     /MaxDrop="5.7252"
                     /score="28.7014976"
                     /energy="-9.5"
                     /TU="NA"
                     /idTUdmin="U605"
                     /TUdmin=0
                     /isTUend="TRUE"
                     /label="downshifts"
     CDS             complement(791389..792231)
                     /gene="mscC"
                     /locus_tag="BSU_07940"
                     /old_locus_tag="BSU07940"
                     /function="16.1: Circulate"
                     /function="16.3: Control"
                     /experiment="publication(s) with functional evidences,
                     PMID:17665170, 18310427, 19252899"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 17665170, 18310427,
                     19252899; Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="mechanosensitive ion channel"
                     /protein_id="NP_388675.1"
                     /db_xref="EnsemblGenomes-Gn:BSU07940"
                     /db_xref="EnsemblGenomes-Tr:CAB12623"
                     /db_xref="GOA:O35043"
                     /db_xref="InterPro:IPR006685"
                     /db_xref="InterPro:IPR010920"
                     /db_xref="InterPro:IPR011014"
                     /db_xref="SubtiList:BG12920"
                     /db_xref="UniProtKB/Swiss-Prot:O35043"
                     /translation="MRMKETLTEIFQNKIVDILLVAVILWIGVFIINRLVQLFFKRTD
                     FIEEKKEKTIESLVRSVTQYTATIGFIFYVISLFVHDFGKILAGAGVAGIVIGFGAQS
                     LIKDVLAGVFLIYERQLHKGDYVTVNNLFNGTVEEIGLRSLQIREWSGKLLTISNGEV
                     RQIENYNIDFMRITESFLISFKEDPDRVYSVLEEACDMLNEELRDSLKRDEFGNPTEP
                     FQIHGITALNKINRGVEFTVKGMVKDDDYFSASLAVRRVLVRQLYQNNVQMLEEAVRI
                     ERTQ*"
                     /label="mscC CDS"
     gene            complement(791389..792231)
                     /gene="mscC"
                     /locus_tag="BSU_07940"
                     /old_locus_tag="BSU07940"
                     /label="mscC gene"
     downshifts      complement(791391)
                     /Source="Nicolas_upshifts"
                     /id="D397"
                     /incds=0
                     /nref=58
                     /ntot=230
                     /MaxReadThrough="1.96922"
                     /MaxDrop="4.8789"
                     /score="23.5281308"
                     /energy="-9.8"
                     /TU="NA"
                     /idTUdmin="U609"
                     /TUdmin=1
                     /isTUend="TRUE"
                     /label="downshifts"
     CDS             complement(792232..793353)
                     /gene="yfkA"
                     /locus_tag="BSU_07955"
                     /old_locus_tag="BSU07955"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative Fe-S oxidoreductase, radical SAM
                     superfamily"
                     /protein_id="NP_388677.2"
                     /db_xref="EnsemblGenomes-Gn:BSU07955"
                     /db_xref="EnsemblGenomes-Tr:CAB12625"
                     /db_xref="GOA:O34400"
                     /db_xref="InterPro:IPR007197"
                     /db_xref="InterPro:IPR013785"
                     /db_xref="InterPro:IPR014866"
                     /db_xref="InterPro:IPR031004"
                     /db_xref="InterPro:IPR034395"
                     /db_xref="SubtiList:BG12918"
                     /db_xref="UniProtKB/Swiss-Prot:O34400"
                     /translation="MTQNTKLRPITPEFDPWEAYMDVDQYGDMQLTNVEFTTTTLCNM
                     RCEHCAVGYTLQPKDPNALPIDLLLKRLEEIPRLRSISITGGEPMLSLKSVKEYVVPL
                     LKYAHERGVRTQINSNLTLDIERYEWIIPYLDVLHISHNWGTVEDFAEIGFAMMDRKP
                     TFEQRARYFEKMIENSRTLVDAGVMVSAETMLNKRTLPHIEHIHRQITEDMKCQRHEV
                     HPMYPSDFASALESLSLKEMRQAIHRLLDIRDENTWMLFGTLPFYACSPDEDDQKLLR
                     RLRAAKNVTVRNDPDGRSRLNVNIFDGNIIVTDFGDTPPLGNIQTDSLPSAYEKWRET
                     KLAKELSCHCPNVRCLGPNVLVKNSYYQDTDFTKRQARS*"
                     /label="yfkA CDS"
     gene            complement(792232..793353)
                     /gene="yfkA"
                     /locus_tag="BSU_07955"
                     /old_locus_tag="BSU07955"
                     /label="yfkA gene"
     promotor_-10    complement(793394..793413)
                     /Source="Nicolas_upshift_promotors"
                     /id="U609"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.942057942057942"
                     /psig=1
                     /xcortree=2517
                     /SigmaFactorBS="atggtagctcattttttgccgtttttcaatcgccgcgctACT
                     TGcgatcttggcaaatcAGGTCTAAAATTAACTGTTGgcagcgttagtatgcccattt
                     a"
                     /listShort="yfkA, yfkC"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(793412)
                     /Source="Nicolas_upshifts"
                     /id="U609"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.942057942057942"
                     /psig=1
                     /xcortree=2517
                     /SigmaFactorBS="atggtagctcattttttgccgtttttcaatcgccgcgctACT
                     TGcgatcttggcaaatcAGGTCTAAAATTAACTGTTGgcagcgttagtatgcccattt
                     a"
                     /listShort="yfkA, yfkC"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(793429..793433)
                     /Source="Nicolas_upshift_promotors"
                     /id="U609"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.942057942057942"
                     /psig=1
                     /xcortree=2517
                     /SigmaFactorBS="atggtagctcattttttgccgtttttcaatcgccgcgctACT
                     TGcgatcttggcaaatcAGGTCTAAAATTAACTGTTGgcagcgttagtatgcccattt
                     a"
                     /listShort="yfkA, yfkC"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-35    793441..793448
                     /Source="Nicolas_upshift_promotors"
                     /id="U610"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.537462537462537"
                     /psig=1
                     /xcortree=574
                     /SigmaFactorBS="ctgatttgccaagatcgcaagtagcgcggCGATTGAAaaacg
                     gcaaaaaaTGAGCTACCATAATAAAAAAtgaatggaggaacagaatggggaacgccgt
                     a"
                     /listShort="yfjT, pdaA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    793462..793481
                     /Source="Nicolas_upshift_promotors"
                     /id="U610"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.537462537462537"
                     /psig=1
                     /xcortree=574
                     /SigmaFactorBS="ctgatttgccaagatcgcaagtagcgcggCGATTGAAaaacg
                     gcaaaaaaTGAGCTACCATAATAAAAAAtgaatggaggaacagaatggggaacgccgt
                     a"
                     /listShort="yfjT, pdaA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        793472
                     /Source="Nicolas_upshifts"
                     /id="U610"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.537462537462537"
                     /psig=1
                     /xcortree=574
                     /SigmaFactorBS="ctgatttgccaagatcgcaagtagcgcggCGATTGAAaaacg
                     gcaaaaaaTGAGCTACCATAATAAAAAAtgaatggaggaacagaatggggaacgccgt
                     a"
                     /listShort="yfjT, pdaA"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             793498..793683
                     /gene="yfjT"
                     /locus_tag="BSU_07970"
                     /old_locus_tag="BSU07970"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms; PubMedId: 22720735"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved hypothetical protein"
                     /protein_id="NP_388678.1"
                     /db_xref="EnsemblGenomes-Gn:BSU07970"
                     /db_xref="EnsemblGenomes-Tr:CAB12626"
                     /db_xref="SubtiList:BG12916"
                     /db_xref="UniProtKB/Swiss-Prot:O35041"
                     /translation="MGNAVNNKDQQIDYLKNRLDMFMNVIDSLDPEATDVEDIDRLIS
                     MLDDLEAKYERFKKDWE*"
                     /label="yfjT CDS"
     gene            793498..793683
                     /gene="yfjT"
                     /locus_tag="BSU_07970"
                     /old_locus_tag="BSU07970"
                     /label="yfjT gene"
     downshifts      793662
                     /Source="Nicolas_upshifts"
                     /id="D398"
                     /incds=0
                     /nref=15
                     /ntot=177
                     /MaxReadThrough="3.03457"
                     /MaxDrop="3.24661"
                     /score="14.1645187"
                     /energy="-6.4"
                     /TU="U610"
                     /idTUdmin="U610"
                     /TUdmin="-559"
                     /isTUend="FALSE"
                     /label="downshifts"
     promotor_-35    793726..793732
                     /Source="Nicolas_upshift_promotors"
                     /id="U611"
                     /multdbtbs="-"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp="0.95004995004995"
                     /psig="0.95004995004995"
                     /xcortree=930
                     /SigmaFactorBS="gaataaaaccgcgtgcccgccgcggtttttttattggcataa
                     agcaacAGTATAAaacaaagtctctatCTGTAAAATAAGaaaaaatgcagaaggagcg
                     c"
                     /listShort="pdaA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     upshifts        793738
                     /Source="Nicolas_upshifts"
                     /id="U611"
                     /multdbtbs="-"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp="0.95004995004995"
                     /psig="0.95004995004995"
                     /xcortree=930
                     /SigmaFactorBS="gaataaaaccgcgtgcccgccgcggtttttttattggcataa
                     agcaacAGTATAAaacaaagtctctatCTGTAAAATAAGaaaaaatgcagaaggagcg
                     c"
                     /listShort="pdaA"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-10    793747..793758
                     /Source="Nicolas_upshift_promotors"
                     /id="U611"
                     /multdbtbs="-"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp="0.95004995004995"
                     /psig="0.95004995004995"
                     /xcortree=930
                     /SigmaFactorBS="gaataaaaccgcgtgcccgccgcggtttttttattggcataa
                     agcaacAGTATAAaacaaagtctctatCTGTAAAATAAGaaaaaatgcagaaggagcg
                     c"
                     /listShort="pdaA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     CDS             793784..794575
                     /gene="pdaA"
                     /locus_tag="BSU_07980"
                     /old_locus_tag="BSU07980"
                     /EC_number="3.5.1.-"
                     /function="16.11: Scavenge (Catabolism)"
                     /function="16.6: Maintain"
                     /experiment="publication(s) with functional evidences,
                     PMID:14679227, 15687192"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 14679227, 15687192;
                     Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="exported peptidoglycan N-acetylmuramic acid
                     deacetylase"
                     /protein_id="NP_388679.1"
                     /db_xref="EnsemblGenomes-Gn:BSU07980"
                     /db_xref="EnsemblGenomes-Tr:CAB12627"
                     /db_xref="GOA:O34928"
                     /db_xref="InterPro:IPR002509"
                     /db_xref="InterPro:IPR011330"
                     /db_xref="InterPro:IPR014235"
                     /db_xref="PDB:1NY1"
                     /db_xref="PDB:1W17"
                     /db_xref="PDB:1W1A"
                     /db_xref="PDB:1W1B"
                     /db_xref="SubtiList:BG12915"
                     /db_xref="UniProtKB/Swiss-Prot:O34928"
                     /translation="MKWMCSICCAAVLLAGGAAQAEAVPNEPINWGFKRSVNHQPPDA
                     GKQLNSLIEKYDAFYLGNTKEKTIYLTFDNGYENGYTPKVLDVLKKHRVTGTFFVTGH
                     FVKDQPQLIKRMSDEGHIIGNHSFHHPDLTTKTADQIQDELDSVNEEVYKITGKQDNL
                     YLRPPRGVFSEYVLKETKRLGYQTVFWSVAFVDWKINNQKGKKYAYDHMIKQAHPGAI
                     YLLHTVSRDNAEALDDAITDLKKQGYTFKSIDDLMFEKEMRLPSL*"
                     /label="pdaA CDS"
     gene            793784..794575
                     /gene="pdaA"
                     /locus_tag="BSU_07980"
                     /old_locus_tag="BSU07980"
                     /label="pdaA gene"
     downshifts      794573
                     /Source="Nicolas_upshifts"
                     /id="D399"
                     /incds=0
                     /nref=1
                     /ntot=36
                     /MaxReadThrough="2.12067"
                     /MaxDrop="3.4013"
                     /score="14.4741934"
                     /energy="-10.2"
                     /TU="NA"
                     /idTUdmin="U611"
                     /TUdmin=22
                     /isTUend="TRUE"
                     /label="downshifts"
     CDS             complement(794613..795473)
                     /gene="yfjR"
                     /locus_tag="BSU_07990"
                     /old_locus_tag="BSU07990"
                     /EC_number="1.1.1.-"
                     /function="16.11: Scavenge (Catabolism)"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 20512483; Product type
                     e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative beta-hydroxyacid dehydrogenase"
                     /protein_id="NP_388680.2"
                     /db_xref="EnsemblGenomes-Gn:BSU07990"
                     /db_xref="EnsemblGenomes-Tr:CAB12628"
                     /db_xref="GOA:O34969"
                     /db_xref="InterPro:IPR006115"
                     /db_xref="InterPro:IPR008927"
                     /db_xref="InterPro:IPR013328"
                     /db_xref="InterPro:IPR015815"
                     /db_xref="InterPro:IPR029154"
                     /db_xref="InterPro:IPR036291"
                     /db_xref="SubtiList:BG12914"
                     /db_xref="UniProtKB/Swiss-Prot:O34969"
                     /translation="MKIAVIGLGNMGQPIARNVLQAGYELTVYNRTKQKTEDLVTEGA
                     QAADTPRLAAKSADIVITMLADDDSVSTVTFGEDGLLEGLAENGIHISMSTISVEFSE
                     KLAAAHAEKGQFFLAAPVLGRPDAAAKAALRIITAGPAEAKQAAKPLLDSLSQQIFDV
                     GEESKTANAAKISINFLLVSMLEALSESFLMMEKYGLEQKQFLEIASALFGSPVYQNY
                     GTIMAEQKFEPAGFKMSLGLKDTNLALAAAKRVSANLPLAELAKSHFESGIEKGFGDL
                     DWAALIKCIK*"
                     /label="yfjR CDS"
     gene            complement(794613..795473)
                     /gene="yfjR"
                     /locus_tag="BSU_07990"
                     /old_locus_tag="BSU07990"
                     /label="yfjR gene"
     downshifts      complement(794627)
                     /Source="Nicolas_upshifts"
                     /id="D400"
                     /incds=0
                     /nref=15
                     /ntot=193
                     /MaxReadThrough="2.61589"
                     /MaxDrop="3.98341"
                     /score="-1.3382901"
                     /energy="-12.1"
                     /TU="NA"
                     /idTUdmin="U612"
                     /TUdmin=0
                     /isTUend="TRUE"
                     /label="downshifts"
     promotor_-10    complement(795493..795512)
                     /Source="Nicolas_upshift_promotors"
                     /id="U612"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.834165834165834"
                     /psig=1
                     /xcortree=1961
                     /SigmaFactorBS="agcgagcagctgttcttttttgttgtaagccgatcgCTATgc
                     atattctgttcatATTGTTTATAATGGAAAAAAtattcagggagtgattagattgaaa
                     a"
                     /listShort="yfjR"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(795507)
                     /Source="Nicolas_upshifts"
                     /id="U612"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.834165834165834"
                     /psig=1
                     /xcortree=1961
                     /SigmaFactorBS="agcgagcagctgttcttttttgttgtaagccgatcgCTATgc
                     atattctgttcatATTGTTTATAATGGAAAAAAtattcagggagtgattagattgaaa
                     a"
                     /listShort="yfjR"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(795528..795531)
                     /Source="Nicolas_upshift_promotors"
                     /id="U612"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.834165834165834"
                     /psig=1
                     /xcortree=1961
                     /SigmaFactorBS="agcgagcagctgttcttttttgttgtaagccgatcgCTATgc
                     atattctgttcatATTGTTTATAATGGAAAAAAtattcagggagtgattagattgaaa
                     a"
                     /listShort="yfjR"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             complement(795572..796531)
                     /gene="yfjQ"
                     /locus_tag="BSU_08000"
                     /old_locus_tag="BSU08000"
                     /function="16.1: Circulate"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 2a: Function from experimental evidences
                     in other organisms; PubMedId: 14563871, 24415722; Product
                     type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="divalent cation (octahedral coordination)
                     transporter"
                     /protein_id="NP_388681.1"
                     /db_xref="EnsemblGenomes-Gn:BSU08000"
                     /db_xref="EnsemblGenomes-Tr:CAB12629"
                     /db_xref="GOA:O31543"
                     /db_xref="InterPro:IPR002523"
                     /db_xref="InterPro:IPR004488"
                     /db_xref="SubtiList:BG12913"
                     /db_xref="UniProtKB/Swiss-Prot:O31543"
                     /translation="MINITAITTEHQLLKNIPIERVEQPDIAWYWVDFYGPEDTETAL
                     LRDFFHFHPLAIEDCFQHMQRPKLDHYDGYRFYVIHALNKETLETEEVDIFQGEKFVV
                     TFHLHETPGIAKVRERLYASPDILKKGPGHISYMIMDQLVDEYFPLVYKIEDRLNEIE
                     ESRPHKTYGTLMNEVFDLRTDLLHLRRTIIPMRDLLYRILSLDHVKEQRETKAYFSDI
                     YDHLLKLSEIVESNRDMTSDLRDSYVTLNSNRMNAIMMTLTIVSTIFIPLTFIAGVYG
                     MNFDFMPELHWKYGYFAVLGLMAALVIGMLIWFVHKGWFNIFK*"
                     /label="yfjQ CDS"
     gene            complement(795572..796531)
                     /gene="yfjQ"
                     /locus_tag="BSU_08000"
                     /old_locus_tag="BSU08000"
                     /label="yfjQ gene"
     downshifts      complement(795595)
                     /Source="Nicolas_upshifts"
                     /id="D401"
                     /incds=0
                     /nref=137
                     /ntot=224
                     /MaxReadThrough="2.29296"
                     /MaxDrop="4.2496"
                     /score="10.2736001"
                     /energy="-7.5"
                     /TU="NA"
                     /idTUdmin="U613"
                     /TUdmin=0
                     /isTUend="TRUE"
                     /label="downshifts"
     promotor_-10    complement(796542..796561)
                     /Source="Nicolas_upshift_promotors"
                     /id="U613"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.888111888111888"
                     /psig="0.993006993006993"
                     /xcortree=1816
                     /SigmaFactorBS="tggaattaggcagagagtaccgtatACTTttctcataaagac
                     cgCATGATATAATGGCAGGTGGagggttgtttatgatcaacattaccgcaatcacaac
                     a"
                     /listShort="yfjQ"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(796545)
                     /Source="Nicolas_upshifts"
                     /id="U613"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.888111888111888"
                     /psig="0.993006993006993"
                     /xcortree=1816
                     /SigmaFactorBS="tggaattaggcagagagtaccgtatACTTttctcataaagac
                     cgCATGATATAATGGCAGGTGGagggttgtttatgatcaacattaccgcaatcacaac
                     a"
                     /listShort="yfjQ"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(796577..796580)
                     /Source="Nicolas_upshift_promotors"
                     /id="U613"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.888111888111888"
                     /psig="0.993006993006993"
                     /xcortree=1816
                     /SigmaFactorBS="tggaattaggcagagagtaccgtatACTTttctcataaagac
                     cgCATGATATAATGGCAGGTGGagggttgtttatgatcaacattaccgcaatcacaac
                     a"
                     /listShort="yfjQ"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-35    796592..796596
                     /Source="Nicolas_upshift_promotors"
                     /id="U614"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.832167832167832"
                     /psig="0.999000999001"
                     /xcortree=2271
                     /SigmaFactorBS="atgcggtctttatgagaaaagtatacggtactcTCTGCctaa
                     ttccagcggCATGTTATACTGAACAAAAAcggaaaaaagggtggatctcatgtggaag
                     g"
                     /listShort="yfjP, S277, yfjO"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    796610..796629
                     /Source="Nicolas_upshift_promotors"
                     /id="U614"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.832167832167832"
                     /psig="0.999000999001"
                     /xcortree=2271
                     /SigmaFactorBS="atgcggtctttatgagaaaagtatacggtactcTCTGCctaa
                     ttccagcggCATGTTATACTGAACAAAAAcggaaaaaagggtggatctcatgtggaag
                     g"
                     /listShort="yfjP, S277, yfjO"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        796619
                     /Source="Nicolas_upshifts"
                     /id="U614"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.832167832167832"
                     /psig="0.999000999001"
                     /xcortree=2271
                     /SigmaFactorBS="atgcggtctttatgagaaaagtatacggtactcTCTGCctaa
                     ttccagcggCATGTTATACTGAACAAAAAcggaaaaaagggtggatctcatgtggaag
                     g"
                     /listShort="yfjP, S277, yfjO"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             796650..797513
                     /gene="yfjP"
                     /locus_tag="BSU_08010"
                     /old_locus_tag="BSU08010"
                     /EC_number="3.2.2.21"
                     /function="16.8: Protect"
                     /function="16.6: Maintain"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative DNA-3-methyladenine glycosylase"
                     /protein_id="NP_388682.1"
                     /db_xref="EnsemblGenomes-Gn:BSU08010"
                     /db_xref="EnsemblGenomes-Tr:CAB12630"
                     /db_xref="GOA:O31544"
                     /db_xref="InterPro:IPR003265"
                     /db_xref="InterPro:IPR011257"
                     /db_xref="InterPro:IPR023170"
                     /db_xref="SubtiList:BG12912"
                     /db_xref="UniProtKB/Swiss-Prot:O31544"
                     /translation="MWKEKVSVTPPYHFDRVLDRLSLDPLNAVDREAREVRVPIRNQA
                     GDVCIVKVQALGHAGEPEFLVSGETDQGEMMKEIKRIFQWENHLQHVLDHFSKTSLSA
                     IFEEHAGTPLVLDYSVYNCMMKCIIHQQLNLSFAYTLTERFVHAFGEQKDGVWCYPKP
                     ETIAELDYQDLRDLQFSMRKAEYTIDTSRMIAEGTLSLSELPHMADEDIMKKLIKIRG
                     IGPWTVQNVLMFGLGRPNLFPLADIGLQNAIKRHFQLDDKPAKDVMLAMSKEWEPYLS
                     YASLYLWRSIE*"
                     /label="yfjP CDS"
     gene            796650..797513
                     /gene="yfjP"
                     /locus_tag="BSU_08010"
                     /old_locus_tag="BSU08010"
                     /label="yfjP gene"
     S_feature       797514..797626
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_873289_873401"
                     /HighExp="BC, M40t90, LBGtran, C90, M9-stat, M0t90,
                     Lbtran, Sw, M40t45, B60"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.999"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S277"
     CDS             797627..799027
                     /gene="yfjO"
                     /locus_tag="BSU_08020"
                     /old_locus_tag="BSU08020"
                     /EC_number="2.1.1.-"
                     /function="16.8: Protect"
                     /function="16.6: Maintain"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative RNA methyltransferase"
                     /protein_id="NP_388683.1"
                     /db_xref="EnsemblGenomes-Gn:BSU08020"
                     /db_xref="EnsemblGenomes-Tr:CAB12631"
                     /db_xref="GOA:O31545"
                     /db_xref="InterPro:IPR001566"
                     /db_xref="InterPro:IPR002792"
                     /db_xref="InterPro:IPR010280"
                     /db_xref="InterPro:IPR012340"
                     /db_xref="InterPro:IPR029063"
                     /db_xref="InterPro:IPR030390"
                     /db_xref="InterPro:IPR030391"
                     /db_xref="SubtiList:BG12911"
                     /db_xref="UniProtKB/Swiss-Prot:O31545"
                     /translation="MNQQKKQAPVELKVGQTFPLTIKRLGINGEGVGYFKKKVVFVPG
                     ALPGEEVVVQATKVQPKFSEGRIKKIRKASEHRVAPPCPVYEQCGGCQLQHLAYSQQL
                     REKRDIVIQSLERHTKFKVENMEIKETIGMDNPWNYRNKSQFQIGRSQSGSIIAGLYG
                     LDSHDIVPIKDCIVQHPATNKTTGIVRRILEDFNVSVYNERKRKGDVRTIVTRVGFET
                     GEVQVVLVTAKETLPHKEEIVKAIQKRLPEVKSIIQNVNGAKTSVIFGEKTKQLAGKT
                     VIQEVLGDVSFELSARAFFQLNPEQTVKLYDEVKKAAQLTGKEKVVDAYCGVGTIGMW
                     VADGAKEVRGMDVIKESIDDAKKNAKKHGMANATYVTGTAEHWLPKWTKEGFRPDVVI
                     VDPPRTGCDSTFLDTIKKVKPKRFVYVSCNPSTLAKDLQTLSKDYRVDYIQPVDMFPQ
                     TAHVEAVARLVLKSSN*"
                     /label="yfjO CDS"
     gene            797627..799027
                     /gene="yfjO"
                     /locus_tag="BSU_08020"
                     /old_locus_tag="BSU08020"
                     /label="yfjO gene"
     downshifts      799039
                     /Source="Nicolas_upshifts"
                     /id="D402"
                     /incds=0
                     /nref=198
                     /ntot=251
                     /MaxReadThrough="1.18186"
                     /MaxDrop="5.19313"
                     /score="11.8630961"
                     /energy="-12.6"
                     /TU="NA"
                     /idTUdmin="U614"
                     /TUdmin=0
                     /isTUend="TRUE"
                     /label="downshifts"
     promotor_-35    799333..799340
                     /Source="Nicolas_upshift_promotors"
                     /id="U615"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.98901098901099"
                     /psig=1
                     /xcortree=2924
                     /SigmaFactorBS="tagatgtattttcataatttgtaaaattataTATTGACTtgc
                     agttattacgtgTGAAATATTGATGATAGGAAtataaggaaagtatggcgtatatcat
                     t"
                     /listShort="S278, yfzA, S279"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    799356..799375
                     /Source="Nicolas_upshift_promotors"
                     /id="U615"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.98901098901099"
                     /psig=1
                     /xcortree=2924
                     /SigmaFactorBS="tagatgtattttcataatttgtaaaattataTATTGACTtgc
                     agttattacgtgTGAAATATTGATGATAGGAAtataaggaaagtatggcgtatatcat
                     t"
                     /listShort="S278, yfzA, S279"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        799362
                     /Source="Nicolas_upshifts"
                     /id="U615"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.98901098901099"
                     /psig=1
                     /xcortree=2924
                     /SigmaFactorBS="tagatgtattttcataatttgtaaaattataTATTGACTtgc
                     agttattacgtgTGAAATATTGATGATAGGAAtataaggaaagtatggcgtatatcat
                     t"
                     /listShort="S278, yfzA, S279"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     S_feature       799369..799652
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_875144_875427"
                     /HighExp="M9-stat, T1.30H, T0.30H, T2.0H, LoTm, T3.0H,
                     T3.30H, T1.0H, T2.30H, T4.0H"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="0.69102300000000005"
                     /TUshortSig="SigA"
                     /TUshortPSig=1
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S278"
     CDS             799653..799919
                     /gene="yfzA"
                     /locus_tag="BSU_08029"
                     /old_locus_tag="BSU08029"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved hypothetical protein"
                     /protein_id="YP_003097694.1"
                     /db_xref="EnsemblGenomes-Gn:BSU08029"
                     /db_xref="EnsemblGenomes-Tr:CAX52581"
                     /db_xref="GOA:C0H3X6"
                     /db_xref="InterPro:IPR025627"
                     /db_xref="UniProtKB/Swiss-Prot:C0H3X6"
                     /translation="MDKVYKRSWFQTFLAFLVSQLYFNFVELTGWGPKYREMNGFPAN
                     IVELDFFQTYLSFYDNPWFNIITVFLGVFTIIQIITGITKDIRN*"
                     /label="yfzA CDS"
     gene            799653..799919
                     /gene="yfzA"
                     /locus_tag="BSU_08029"
                     /old_locus_tag="BSU08029"
                     /label="yfzA gene"
     promotor_-10    complement(799867..799886)
                     /Source="Nicolas_upshift_promotors"
                     /id="U616"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.936063936063936"
                     /psig=1
                     /xcortree=2926
                     /SigmaFactorBS="taaataaggcatcagaagttattgctttaatttcgaatatcC
                     TTTgttatccctgtaatTATTTGTATAATAGTGAAAActcccaagaaaacagtaataa
                     t"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(799885)
                     /Source="Nicolas_upshifts"
                     /id="U616"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.936063936063936"
                     /psig=1
                     /xcortree=2926
                     /SigmaFactorBS="taaataaggcatcagaagttattgctttaatttcgaatatcC
                     TTTgttatccctgtaatTATTTGTATAATAGTGAAAActcccaagaaaacagtaataa
                     t"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(799901..799904)
                     /Source="Nicolas_upshift_promotors"
                     /id="U616"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.936063936063936"
                     /psig=1
                     /xcortree=2926
                     /SigmaFactorBS="taaataaggcatcagaagttattgctttaatttcgaatatcC
                     TTTgttatccctgtaatTATTTGTATAATAGTGAAAActcccaagaaaacagtaataa
                     t"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     S_feature       799920..800401
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_875695_876176"
                     /HighExp="G180, Paraq, H2O2, G135, Oxctl, G150, C30, LoTm,
                     S8, M9-stat"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig=1
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S279"
     promotor_-35    800372..800375
                     /Source="Nicolas_upshift_promotors"
                     /id="U617"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.591408591408591"
                     /psig=1
                     /xcortree=2598
                     /SigmaFactorBS="atcttcaataacagggcaattattttgcgTTGGtaatatgga
                     gaactcaTATGATATTCTATTTAGGTTggaatcctttttatccaaaaagttcaaaagc
                     a"
                     /listShort="S280, dusC, S281, yfjM, yfjL"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    800392..800411
                     /Source="Nicolas_upshift_promotors"
                     /id="U617"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.591408591408591"
                     /psig=1
                     /xcortree=2598
                     /SigmaFactorBS="atcttcaataacagggcaattattttgcgTTGGtaatatgga
                     gaactcaTATGATATTCTATTTAGGTTggaatcctttttatccaaaaagttcaaaagc
                     a"
                     /listShort="S280, dusC, S281, yfjM, yfjL"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     S_feature       800403..800650
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_876178_876425"
                     /HighExp="H2O2, G180, Paraq, G150, G135, Oxctl, dia15,
                     LBGstat, LBGexp, Diami"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig=1
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S280"
     upshifts        800403
                     /Source="Nicolas_upshifts"
                     /id="U617"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.591408591408591"
                     /psig=1
                     /xcortree=2598
                     /SigmaFactorBS="atcttcaataacagggcaattattttgcgTTGGtaatatgga
                     gaactcaTATGATATTCTATTTAGGTTggaatcctttttatccaaaaagttcaaaagc
                     a"
                     /listShort="S280, dusC, S281, yfjM, yfjL"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             800651..801628
                     /gene="dusC"
                     /locus_tag="BSU_08030"
                     /old_locus_tag="BSU08030"
                     /EC_number="1.-.-.-"
                     /function="16.2: Construct biomass (Anabolism)"
                     /function="16.6: Maintain"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 2a: Function from experimental evidences
                     in other organisms; PubMedId: 11983710, 25902496; Product
                     type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA-dihydrouridine synthase 2"
                     /protein_id="NP_388684.1"
                     /db_xref="EnsemblGenomes-Gn:BSU08030"
                     /db_xref="EnsemblGenomes-Tr:CAB12632"
                     /db_xref="GOA:O31546"
                     /db_xref="InterPro:IPR001269"
                     /db_xref="InterPro:IPR013785"
                     /db_xref="InterPro:IPR018517"
                     /db_xref="InterPro:IPR024036"
                     /db_xref="InterPro:IPR035587"
                     /db_xref="SubtiList:BG12910"
                     /db_xref="UniProtKB/Swiss-Prot:O31546"
                     /translation="MTENFWRELPRPFFVLAPMEDVTDVVFRHVVSEAGRPDVFFTEF
                     TNSESYCHPDGKDSVRGRLTFTEDEQPIVAHIWGDKPENFRKMSIGMAELGFKGLDIN
                     MGCPVPNVAGNGKGSGLICRPAVAAELIQAAKAGGLPVSVKTRLGYTDVDEWREWLTH
                     ILKQDIANLSIHLRTRAEMSKVDAHWELIPEIKKLRDEVAPDTLLTINGDIPDRQTGL
                     KLAEQYGVDGIMIGRGIFTNPFAFEKEPKEHSSKELLDLLRLHLDLHDEYSKEEARPY
                     KPLPRFFKIYLRGFRGASELRNQCMNTKSTDEVRALLDDFERKYLDGIE*"
                     /label="dusC CDS"
     gene            800651..801628
                     /gene="dusC"
                     /locus_tag="BSU_08030"
                     /old_locus_tag="BSU08030"
                     /label="dusC gene"
     S_feature       801629..801721
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_877404_877496"
                     /HighExp="G135, G180, Paraq, G150, H2O2, LBGexp, aero,
                     dia0, Oxctl, dia15"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig=1
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S281"
     downshifts      801678
                     /Source="Nicolas_upshifts"
                     /id="D403"
                     /incds=0
                     /nref=86
                     /ntot=218
                     /MaxReadThrough="3.30163"
                     /MaxDrop="4.0519"
                     /score="11.8630961"
                     /energy="-12.6"
                     /TU="U617"
                     /idTUdmin="U618"
                     /TUdmin="-1211"
                     /isTUend="FALSE"
                     /label="downshifts"
     promotor_-35    801762..801768
                     /Source="Nicolas_upshift_promotors"
                     /id="U618"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.994005994005994"
                     /psig="0.999000999001"
                     /xcortree=3192
                     /SigmaFactorBS="gtacgcagcttttactcagcctgtcttttctctAATTTATtg
                     taagaaaatAATGGTATATTTAGTGGAGAtatcatataaagggggagaggaaaatgaa
                     a"
                     /listShort="yfjM, yfjL"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    801780..801799
                     /Source="Nicolas_upshift_promotors"
                     /id="U618"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.994005994005994"
                     /psig="0.999000999001"
                     /xcortree=3192
                     /SigmaFactorBS="gtacgcagcttttactcagcctgtcttttctctAATTTATtg
                     taagaaaatAATGGTATATTTAGTGGAGAtatcatataaagggggagaggaaaatgaa
                     a"
                     /listShort="yfjM, yfjL"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        801789
                     /Source="Nicolas_upshifts"
                     /id="U618"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.994005994005994"
                     /psig="0.999000999001"
                     /xcortree=3192
                     /SigmaFactorBS="gtacgcagcttttactcagcctgtcttttctctAATTTATtg
                     taagaaaatAATGGTATATTTAGTGGAGAtatcatataaagggggagaggaaaatgaa
                     a"
                     /listShort="yfjM, yfjL"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             801824..802276
                     /gene="yfjM"
                     /locus_tag="BSU_08040"
                     /old_locus_tag="BSU08040"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved hypothetical protein"
                     /protein_id="NP_388685.1"
                     /db_xref="EnsemblGenomes-Gn:BSU08040"
                     /db_xref="EnsemblGenomes-Tr:CAB12633"
                     /db_xref="SubtiList:BG12909"
                     /db_xref="UniProtKB/Swiss-Prot:O31547"
                     /translation="MKRLCIIPCGKKKIWDVQPDAGPVRAEDAYLSPFHQACERYAKT
                     FFDEWVILSAKHGFLRPDDLVSGNYDVTFGTGHPEIMTADELRRQFHEKGFSDIEELV
                     MLGGKKYRSVLNAVIGEHQHISWPLSSYKGIGYMLQALNRAVEEKHEL*"
                     /label="yfjM CDS"
     gene            801824..802276
                     /gene="yfjM"
                     /locus_tag="BSU_08040"
                     /old_locus_tag="BSU08040"
                     /label="yfjM gene"
     CDS             802306..802995
                     /gene="yfjL"
                     /locus_tag="BSU_08050"
                     /old_locus_tag="BSU08050"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved hypothetical protein"
                     /protein_id="NP_388686.1"
                     /db_xref="EnsemblGenomes-Gn:BSU08050"
                     /db_xref="EnsemblGenomes-Tr:CAB12634"
                     /db_xref="InterPro:IPR020523"
                     /db_xref="SubtiList:BG11034"
                     /db_xref="UniProtKB/Swiss-Prot:P40773"
                     /translation="MKKLVFGLLAIVLFGCGLYIYHVWFGDPFSKNAAEQKLVSYVKQ
                     TYPKKEIKITNGVYNAKTSEYVFEATSQSHRYPMCTKGFLHPKVTCDGIEEAYTESVA
                     KHVNEEATKAIEADLKKAVPRFIKADAALSIENGQFTLDTKWNKKLAEKAPMSMTIQL
                     DASGLSKTDAAKMAETVRKTLNEKGYTYSNGTIDCMQKDGDGGIGYVKYSIDFLSKAA
                     IQSNDAEELGS*"
                     /label="yfjL CDS"
     gene            802306..802995
                     /gene="yfjL"
                     /locus_tag="BSU_08050"
                     /old_locus_tag="BSU08050"
                     /label="yfjL gene"
     downshifts      803000
                     /Source="Nicolas_upshifts"
                     /id="D404"
                     /incds=0
                     /nref=31
                     /ntot=205
                     /MaxReadThrough="0.02745"
                     /MaxDrop="3.61164"
                     /score="23.9796437"
                     /energy="-9"
                     /TU="NA"
                     /idTUdmin="U617"
                     /TUdmin=1
                     /isTUend="TRUE"
                     /label="downshifts"
     misc_feature    803172..803190
                     /Source="Nicolas_upshift_promotors"
                     /id="U619"
                     /multdbtbs="SigL"
                     /comp="M18"
                     /sig="SigL"
                     /pcomp="0.878121878121878"
                     /psig="0.878121878121878"
                     /xcortree=351
                     /SigmaFactorBS="caaactgtctccaaagtgaagatgagaagactgattttacgg
                     gctcaaaagacTGGCACACTTCTTGCATTTataatggtgaaccctaaatagaaggagg
                     c"
                     /listShort="acoA, acoB, acoC, acoL, acoR, sspH"
                     /GFF_Attribute="listLong"
                     /label="promotor_single_box"
                     /note="Geneious type: promotor_single_box"
     upshifts        803179
                     /Source="Nicolas_upshifts"
                     /id="U619"
                     /multdbtbs="SigL"
                     /comp="M18"
                     /sig="SigL"
                     /pcomp="0.878121878121878"
                     /psig="0.878121878121878"
                     /xcortree=351
                     /SigmaFactorBS="caaactgtctccaaagtgaagatgagaagactgattttacgg
                     gctcaaaagacTGGCACACTTCTTGCATTTataatggtgaaccctaaatagaaggagg
                     c"
                     /listShort="acoA, acoB, acoC, acoL, acoR, sspH"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             803227..804228
                     /gene="acoA"
                     /locus_tag="BSU_08060"
                     /old_locus_tag="BSU08060"
                     /EC_number="1.1.1.303"
                     /EC_number="2.3.1.190"
                     /function="16.11: Scavenge (Catabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:10368162, 11274109, 22714279"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 10368162, 11274109,
                     22714279; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="acetoin dehydrogenase E1 component
                     (TPP-dependent alpha subunit)"
                     /protein_id="NP_388687.1"
                     /db_xref="EnsemblGenomes-Gn:BSU08060"
                     /db_xref="EnsemblGenomes-Tr:CAB12635"
                     /db_xref="GOA:O31404"
                     /db_xref="InterPro:IPR001017"
                     /db_xref="InterPro:IPR029061"
                     /db_xref="SubtiList:BG12558"
                     /db_xref="UniProtKB/Swiss-Prot:O31404"
                     /translation="MKLLKREGLSLTEEKALWMYQKMLEIRGFEDKVHELFAQGVLPG
                     FVHLYAGEEAVAVGVCAHLHDGDSITSTHRGHGHCIAKGCDLDGMMAEIFGKATGLCK
                     GKGGSMHIADLDKGMLGANGIVGGGFTLACGSALTAKYKQTKNVSVCFFGDGANNQGT
                     FHEGLNLAAVWNLPVVFVAENNGYGEATPFEYASACDSIADRAAAYNMPGVTVDGKDI
                     LAVYQAAEEAIERARNGGGPSLIECMTYRNYGHFEGDAQTYKTKDERVEHLEEKDAIQ
                     GFKNYLLKETDANKLSDIEQRVSESIEKAVSFSEDSPYPKDSELLTDVYVSYEKGGM*
                     "
                     /label="acoA CDS"
     gene            803227..804228
                     /gene="acoA"
                     /locus_tag="BSU_08060"
                     /old_locus_tag="BSU08060"
                     /label="acoA gene"
     CDS             804232..805260
                     /gene="acoB"
                     /locus_tag="BSU_08070"
                     /old_locus_tag="BSU08070"
                     /EC_number="1.1.1.303"
                     /EC_number="2.3.1.190"
                     /function="16.11: Scavenge (Catabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:11274109, 10368162"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 11274109, 10368162;
                     Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="acetoin dehydrogenase E1 component
                     (TPP-dependent beta subunit)"
                     /protein_id="NP_388688.1"
                     /db_xref="EnsemblGenomes-Gn:BSU08070"
                     /db_xref="EnsemblGenomes-Tr:CAB12636"
                     /db_xref="GOA:O34591"
                     /db_xref="InterPro:IPR005475"
                     /db_xref="InterPro:IPR009014"
                     /db_xref="InterPro:IPR029061"
                     /db_xref="InterPro:IPR033248"
                     /db_xref="SubtiList:BG12559"
                     /db_xref="UniProtKB/Swiss-Prot:O34591"
                     /translation="MARVISMSDAINEAMKLAMRKDENVLLIGEDVAGGAAVDHLQDD
                     EAWGGVLGVTKGLVQEFGRTRVLDTPISEAGYMGAAMAAASTGLRPIAELMFNDFIGT
                     CFDQVINQGAKFRYMFGGKAQVPITVRTTYGAGFRAAAQHSQSLYGLFTSIPGLKTVV
                     PSNPYDAKGLLLAAIEDNDPVFFFEDKTSYNMKGEVPEDYYTIPLGKADIKREGNDVT
                     LFAVGKQVNTALEAAAQLSERGIEAEVLDPRSLSPLDEDAIFTSLEKTNRLIIIDEAN
                     PRCSIATDIAALVADKGFDLLDAPIKRITAPHTPVPFSPVLEDQYLPTPDKIVSVTLE
                     LLGEPALN*"
                     /label="acoB CDS"
     gene            804232..805260
                     /gene="acoB"
                     /locus_tag="BSU_08070"
                     /old_locus_tag="BSU08070"
                     /label="acoB gene"
     CDS             805274..806470
                     /gene="acoC"
                     /locus_tag="BSU_08080"
                     /old_locus_tag="BSU08080"
                     /EC_number="2.3.1.12"
                     /function="16.11: Scavenge (Catabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:10368162, 11274109"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 10368162, 11274109;
                     Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="acetoin dehydrogenase E2 component
                     (dihydrolipoamide acetyltransferase)"
                     /protein_id="NP_388689.1"
                     /db_xref="EnsemblGenomes-Gn:BSU08080"
                     /db_xref="EnsemblGenomes-Tr:CAB12637"
                     /db_xref="GOA:O31550"
                     /db_xref="InterPro:IPR000089"
                     /db_xref="InterPro:IPR001078"
                     /db_xref="InterPro:IPR004167"
                     /db_xref="InterPro:IPR011053"
                     /db_xref="InterPro:IPR036625"
                     /db_xref="SubtiList:BG12560"
                     /db_xref="UniProtKB/Swiss-Prot:O31550"
                     /translation="MAVKVVMPKLGMAMKQGEVSIWNKKVGDPVEKGESIASIQSEKI
                     EMEIEAPEKGTLIDIKVKEGEEVPPGTAICYIGDANESVQEEAGAPVAEDNMPQAVQP
                     VKQENKPAASKKDRMKISPVARKIAEKAGLDLKQLKGTGPGGRIVKDDVTKALAEQKK
                     DQAKPVSEQKAQEIPVTGMRKVIAARMQESLANSAQLTITMKADITKLATLQKQLSPT
                     AEERYGTKLTITHFVSRAAVLALQAHPVLNSFYQNERIITHPHVHLGMAVALENGLVV
                     PVIRHAEKLSLIELAQSISENAKKAREGRAGSEELQGSTFSITNLGAFGVEHFTPILN
                     PPETGILGIGASYDTPVYQGEEIVRSTILPLSLTFDHRACDGAPAAAFLKAMKTYLEE
                     PAALIL*"
                     /label="acoC CDS"
     gene            805274..806470
                     /gene="acoC"
                     /locus_tag="BSU_08080"
                     /old_locus_tag="BSU08080"
                     /label="acoC gene"
     downshifts      complement(805275)
                     /Source="Nicolas_upshifts"
                     /id="D405"
                     /incds=0
                     /nref=8
                     /ntot=46
                     /MaxReadThrough="0.481579999999999"
                     /MaxDrop="4.16582"
                     /score="-0.0231058321"
                     /energy="-9.9"
                     /TU="NA"
                     /idTUdmin="U623"
                     /TUdmin=4796
                     /isTUend="FALSE"
                     /label="downshifts"
     CDS             806491..807867
                     /gene="acoL"
                     /locus_tag="BSU_08090"
                     /old_locus_tag="BSU08090"
                     /EC_number="1.8.1.4"
                     /function="16.11: Scavenge (Catabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:11274109, 22720735"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 11274109, 22720735;
                     Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="acetoin dehydrogenase E3 component
                     (dihydrolipoamide dehydrogenase)"
                     /protein_id="NP_388690.1"
                     /db_xref="EnsemblGenomes-Gn:BSU08090"
                     /db_xref="EnsemblGenomes-Tr:CAB12638"
                     /db_xref="GOA:O34324"
                     /db_xref="InterPro:IPR001100"
                     /db_xref="InterPro:IPR004099"
                     /db_xref="InterPro:IPR006258"
                     /db_xref="InterPro:IPR012999"
                     /db_xref="InterPro:IPR016156"
                     /db_xref="InterPro:IPR023753"
                     /db_xref="InterPro:IPR036188"
                     /db_xref="SubtiList:BG12561"
                     /db_xref="UniProtKB/Swiss-Prot:O34324"
                     /translation="MTLAIIGGGPAGYAAAVSAAQQGRNVLLIDKGKLGGTCLNEGCI
                     PTKSLLESANVLDKIKHADSFGIELPAGAISVDWSKMQSRKQQVVSQLVQGVQYLMKK
                     NQIQVVKGTASFLSERKLLIEGENGKEIREADQVLIASGSEPIELPFAPFDGEWILDS
                     KDALSLSEIPSSLVIVGGGVIGCEYAGLFARLGSQVTIIETADRLIPAEDEDIARLFQ
                     EKLEEDGVEVHTSSRLGRVDQTAKTAIWKSGQREFKTKADYVLVAIGRKPRLDGLQLE
                     QAGVDFSPKGIPVNGHMQTNVPHIYACGDAIGGIQLAHAAFHEGIIAASHASGRDVKI
                     NEKHVPRCIYTSPEIACIGMTERQARSIYGDVKIGEFSFSANGKALIKQQAEGKVKIM
                     AEPEFGEIVGVSMIGPDVTELIGQAAAIMNGEMTADMAEHFIAAHPTLSETLHEALLS
                     TIGLAVHA*"
                     /label="acoL CDS"
     gene            806491..807867
                     /gene="acoL"
                     /locus_tag="BSU_08090"
                     /old_locus_tag="BSU08090"
                     /label="acoL gene"
     downshifts      807861
                     /Source="Nicolas_upshifts"
                     /id="D406"
                     /incds=0
                     /nref=27
                     /ntot=56
                     /MaxReadThrough="5.75671"
                     /MaxDrop="5.6153"
                     /score="27.0133719"
                     /energy="-14.7"
                     /TU="U619"
                     /idTUdmin="U619"
                     /TUdmin="-2156"
                     /isTUend="FALSE"
                     /label="downshifts"
     promotor_-35    807914..807921
                     /Source="Nicolas_upshift_promotors"
                     /id="U620"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.57942057942058"
                     /psig=1
                     /xcortree=368
                     /SigmaFactorBS="ggcgcatggatataaggcgcctgcttttttatTGTTGAAAgc
                     gctttattttTCCCCTACAATAGATGAAAAcggcgtgtaagggaggagcgatcaagga
                     a"
                     /listShort="acoR, sspH"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    807934..807953
                     /Source="Nicolas_upshift_promotors"
                     /id="U620"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.57942057942058"
                     /psig=1
                     /xcortree=368
                     /SigmaFactorBS="ggcgcatggatataaggcgcctgcttttttatTGTTGAAAgc
                     gctttattttTCCCCTACAATAGATGAAAAcggcgtgtaagggaggagcgatcaagga
                     a"
                     /listShort="acoR, sspH"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        807942
                     /Source="Nicolas_upshifts"
                     /id="U620"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.57942057942058"
                     /psig=1
                     /xcortree=368
                     /SigmaFactorBS="ggcgcatggatataaggcgcctgcttttttatTGTTGAAAgc
                     gctttattttTCCCCTACAATAGATGAAAAcggcgtgtaagggaggagcgatcaagga
                     a"
                     /listShort="acoR, sspH"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             807983..809800
                     /gene="acoR"
                     /locus_tag="BSU_08100"
                     /old_locus_tag="BSU08100"
                     /experiment="publication(s) with functional evidences,
                     PMID:11274109, 16944132"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 11274109, 16944132;
                     Product type r: regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator (AcoR-acetoin)"
                     /protein_id="NP_388691.1"
                     /db_xref="EnsemblGenomes-Gn:BSU08100"
                     /db_xref="EnsemblGenomes-Tr:CAB12639"
                     /db_xref="GOA:O31551"
                     /db_xref="InterPro:IPR002078"
                     /db_xref="InterPro:IPR002197"
                     /db_xref="InterPro:IPR003018"
                     /db_xref="InterPro:IPR003593"
                     /db_xref="InterPro:IPR009057"
                     /db_xref="InterPro:IPR025944"
                     /db_xref="InterPro:IPR027417"
                     /db_xref="InterPro:IPR029016"
                     /db_xref="SubtiList:BG11790"
                     /db_xref="UniProtKB/Swiss-Prot:O31551"
                     /translation="MNSVPNDLQTWKRFVKDGVLDEARLRKRIAESWHRCKKAEVNPY
                     LEKGPKVLQQTELDQQSKKHSFFLTTAKPYLEKLLPAIKEMEMMALLIDSDGVVLALD
                     GHPRALYEAKRINFVEGACWTETAVGTNAIGTALHISEPVAIQGSEHYSIASHLWNCS
                     AAPIHHEDGSLAGVIDISCPAAGAHPHMLGIATAIAYAAERELAAKSREKELELISRF
                     GERAASSVPMVLCNTKQHIISASMPIRTSMPDWQGRHLYELKERGYSIENAVTIGDGG
                     TCFYLSEQKKKKAFRFNGVIGQSGRSQAMLMHLERAAATDASVCLSGETGTGKEVAAR
                     ALHENSERRHGPFVAVNCGAIPSDLIESELFGYAEGAFTGAKRNGYKGAFQKANQGTL
                     FLDEIGEISHSMQVALLRVLQERKITPIGGTKEIPVDIRVIAATHCDLRELAENGKIR
                     EDLFYRLHVYPIELPPLRDRTEDIPDLFEYYKQKNHWPGDLPSDFCNVLKQWKWPGNI
                     RELFNVFERLSIRFPDGRLRDESLPALLEAAGLPASSAEKKPAAAGVLTFREQIQKDM
                     MIKALESAKGNVSQAAKISGIPRSTFYKRLKKFNLSAES*"
                     /label="acoR CDS"
     gene            807983..809800
                     /gene="acoR"
                     /locus_tag="BSU_08100"
                     /old_locus_tag="BSU08100"
                     /label="acoR gene"
     promotor_-35    809801..809807
                     /Source="Nicolas_upshift_promotors"
                     /id="U621"
                     /multdbtbs="SigG"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp="0.995004995004995"
                     /psig="0.995004995004995"
                     /xcortree=916
                     /SigmaFactorBS="tacaaacgcctgaaaaaattcaacttgtccgctgaatcataa
                     AGCATACttccttcaggaaatGGAAACGTTATGtattgaaggagggtgttacgatgaa
                     t"
                     /listShort="sspH"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     upshifts        809819
                     /Source="Nicolas_upshifts"
                     /id="U621"
                     /multdbtbs="SigG"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp="0.995004995004995"
                     /psig="0.995004995004995"
                     /xcortree=916
                     /SigmaFactorBS="tacaaacgcctgaaaaaattcaacttgtccgctgaatcataa
                     AGCATACttccttcaggaaatGGAAACGTTATGtattgaaggagggtgttacgatgaa
                     t"
                     /listShort="sspH"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-10    809822..809833
                     /Source="Nicolas_upshift_promotors"
                     /id="U621"
                     /multdbtbs="SigG"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp="0.995004995004995"
                     /psig="0.995004995004995"
                     /xcortree=916
                     /SigmaFactorBS="tacaaacgcctgaaaaaattcaacttgtccgctgaatcataa
                     AGCATACttccttcaggaaatGGAAACGTTATGtattgaaggagggtgttacgatgaa
                     t"
                     /listShort="sspH"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     CDS             809854..810033
                     /gene="sspH"
                     /locus_tag="BSU_08110"
                     /old_locus_tag="BSU08110"
                     /function="16.5: Explore"
                     /experiment="publication(s) with functional evidences,
                     PMID:10333516"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 10333516; Product type
                     cp: cell process"
                     /codon_start=1
                     /transl_table=11
                     /product="small acid-soluble spore protein"
                     /protein_id="NP_388692.1"
                     /db_xref="EnsemblGenomes-Gn:BSU08110"
                     /db_xref="EnsemblGenomes-Tr:CAB12640"
                     /db_xref="GOA:O31552"
                     /db_xref="InterPro:IPR012610"
                     /db_xref="SubtiList:BG12917"
                     /db_xref="UniProtKB/Swiss-Prot:O31552"
                     /translation="MNIQRAKEIVESPDMKKVTYNGVPIYIQHVNEETGTARIYPLDE
                     PQEEHEVQLNSLKED*"
                     /label="sspH CDS"
     gene            809854..810033
                     /gene="sspH"
                     /locus_tag="BSU_08110"
                     /old_locus_tag="BSU08110"
                     /label="sspH gene"
     downshifts      810017
                     /Source="Nicolas_upshifts"
                     /id="D407"
                     /incds=0
                     /nref=96
                     /ntot=181
                     /MaxReadThrough="1.9176"
                     /MaxDrop="6.06509"
                     /score="5.08326573"
                     /energy="-12"
                     /TU="NA"
                     /idTUdmin="U619"
                     /TUdmin=0
                     /isTUend="TRUE"
                     /label="downshifts"
     CDS             complement(810069..810398)
                     /gene="yfjF"
                     /locus_tag="BSU_08120"
                     /old_locus_tag="BSU08120"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; Product type m: membrane
                     component"
                     /codon_start=1
                     /transl_table=11
                     /product="putative membrane protein"
                     /protein_id="NP_388693.1"
                     /db_xref="EnsemblGenomes-Gn:BSU08120"
                     /db_xref="EnsemblGenomes-Tr:CAB12641"
                     /db_xref="GOA:O31553"
                     /db_xref="InterPro:IPR003844"
                     /db_xref="SubtiList:BG12908"
                     /db_xref="UniProtKB/Swiss-Prot:O31553"
                     /translation="MMLITILLFLAAGLAEIGGGYLVWLWLREAKPAGYGIAGALILI
                     VYGILPTFQSFPSFGRVYAAYGGVFIVLAVLWGWLVDRKTPDLYDWIGAFICLIGVCV
                     ILFAPRG*"
                     /label="yfjF CDS"
     gene            complement(810069..810398)
                     /gene="yfjF"
                     /locus_tag="BSU_08120"
                     /old_locus_tag="BSU08120"
                     /label="yfjF gene"
     downshifts      complement(810083)
                     /Source="Nicolas_upshifts"
                     /id="D408"
                     /incds=0
                     /nref=96
                     /ntot=245
                     /MaxReadThrough="2.05328"
                     /MaxDrop="6.2642"
                     /score="34.1179702"
                     /energy="-15.8"
                     /TU="NA"
                     /idTUdmin="U623"
                     /TUdmin="-12"
                     /isTUend="TRUE"
                     /label="downshifts"
     CDS             complement(810448..810906)
                     /gene="yfjE"
                     /locus_tag="BSU_08130"
                     /old_locus_tag="BSU08130"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 15849754, 16850406;
                     Product type m: membrane component"
                     /codon_start=1
                     /transl_table=11
                     /product="putative integral inner membrane protein"
                     /protein_id="NP_388694.1"
                     /db_xref="EnsemblGenomes-Gn:BSU08130"
                     /db_xref="EnsemblGenomes-Tr:CAB12642"
                     /db_xref="GOA:O31554"
                     /db_xref="InterPro:IPR035324"
                     /db_xref="SubtiList:BG12907"
                     /db_xref="UniProtKB/Swiss-Prot:O31554"
                     /translation="MSEALTFESKYALLYLGGGLLAMIYGLITFFMAFPAFTSRGNVI
                     FTIKTGPSGEIFLRKRSVLFSEVKRLYMGRHQYSLKGIFFEDIIIEKTDGKIVRIPTW
                     NIITNPLFFEAVERYILPHLNEEAQNNWISQFTEVQRKAYLKEFENHPKL*"
                     /label="yfjE CDS"
     gene            complement(810448..810906)
                     /gene="yfjE"
                     /locus_tag="BSU_08130"
                     /old_locus_tag="BSU08130"
                     /label="yfjE gene"
     S_feature       complement(810907..810999)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_886682_886774_c"
                     /HighExp="BI, BC, S2, Sw, HiOs, HiTm, S5, ferm, S4, nit"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.992"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S282"
     CDS             complement(811000..811557)
                     /gene="yfjD"
                     /locus_tag="BSU_08140"
                     /old_locus_tag="BSU08140"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 15849754, 16850406;
                     Product type m: membrane component"
                     /codon_start=1
                     /transl_table=11
                     /product="putative integral inner membrane protein"
                     /protein_id="NP_388695.1"
                     /db_xref="EnsemblGenomes-Gn:BSU08140"
                     /db_xref="EnsemblGenomes-Tr:CAB12643"
                     /db_xref="GOA:O31555"
                     /db_xref="InterPro:IPR035324"
                     /db_xref="SubtiList:BG12906"
                     /db_xref="UniProtKB/Swiss-Prot:O31555"
                     /translation="MKNQEIIEVKSKMFLRIWAFVGSAGMGLACLWLFYMGITFQTKY
                     YLLAIPAGFLFTLFCLYLFIIFFPAFTPRGNTIFRIKTGKNGEVFTDKVSVTFTDIKK
                     IEMSRHKFSLKGIFQEDILIQTVDQKTIRIPTWNIIPNPLFFEAVERYILPHLNEEAK
                     SNWIGQFTDIQRSAYLKEFENHPKL*"
                     /label="yfjD CDS"
     gene            complement(811000..811557)
                     /gene="yfjD"
                     /locus_tag="BSU_08140"
                     /old_locus_tag="BSU08140"
                     /label="yfjD gene"
     promotor_-35    811423..811428
                     /Source="Nicolas_upshift_promotors"
                     /id="U622"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp=1
                     /psig=1
                     /xcortree=1171
                     /SigmaFactorBS="tataaacaaaacaaggtgaacagaaagccagcaggaatggct
                     aatagGTAATAtttcgtttgaaacgTAATACCCATATAAAAGAGccacaaacatgcta
                     a"
                     /listShort="S283"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     upshifts        811436
                     /Source="Nicolas_upshifts"
                     /id="U622"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp=1
                     /psig=1
                     /xcortree=1171
                     /SigmaFactorBS="tataaacaaaacaaggtgaacagaaagccagcaggaatggct
                     aatagGTAATAtttcgtttgaaacgTAATACCCATATAAAAGAGccacaaacatgcta
                     a"
                     /listShort="S283"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-10    811443..811461
                     /Source="Nicolas_upshift_promotors"
                     /id="U622"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp=1
                     /psig=1
                     /xcortree=1171
                     /SigmaFactorBS="tataaacaaaacaaggtgaacagaaagccagcaggaatggct
                     aatagGTAATAtttcgtttgaaacgTAATACCCATATAAAAGAGccacaaacatgcta
                     a"
                     /listShort="S283"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     S_feature       811447..812034
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_887222_887809"
                     /HighExp="S4, S5, S6, S3, S8, S7, LoTm, T5.0H, T4.0H, Pyr"
                     /AntisenseName="yfjC"
                     /AntisenseCor="9.3643586039105595E-2"
                     /AntisenseRegPval="-0.9"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigEF"
                     /TUshortPSig=1
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S283"
     CDS             complement(811589..812356)
                     /gene="yfjC"
                     /locus_tag="BSU_08150"
                     /old_locus_tag="BSU08150"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms; PubMedId: 14563871"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved protein of unknown function"
                     /protein_id="NP_388696.1"
                     /db_xref="EnsemblGenomes-Gn:BSU08150"
                     /db_xref="EnsemblGenomes-Tr:CAB12644"
                     /db_xref="SubtiList:BG12905"
                     /db_xref="UniProtKB/Swiss-Prot:O31556"
                     /translation="MKQFTISIEELLFCFYSEGFFEQGMALKQAYFPEIEDEQLGALF
                     EAACRSLLAKDAAEYRNHQYRLKDEYCPFIHVLNDADYTVKLSKFNGQGAEQNVSCHV
                     SKFGTYSHELLFDEQVHRITKMESSEGLLAKTDEFLHIIDTEDKRESIVTLTSNEFEK
                     LLEGASDNPSYLKEFLEKHDHQEDVTRFANDLALRKGKMDTLMRLAYGKDNTPEVADM
                     AFVLPGAHHTWLVTGITQNEFSILPAHKDVVNQIISK*"
                     /label="yfjC CDS"
     gene            complement(811589..812356)
                     /gene="yfjC"
                     /locus_tag="BSU_08150"
                     /old_locus_tag="BSU08150"
                     /label="yfjC gene"
     CDS             complement(812368..813591)
                     /gene="yfjB"
                     /locus_tag="BSU_08160"
                     /old_locus_tag="BSU08160"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; Product type s: structure"
                     /codon_start=1
                     /transl_table=11
                     /product="putative phage protein"
                     /protein_id="NP_388697.1"
                     /db_xref="EnsemblGenomes-Gn:BSU08160"
                     /db_xref="EnsemblGenomes-Tr:CAB12645"
                     /db_xref="SubtiList:BG12904"
                     /db_xref="UniProtKB/Swiss-Prot:O31557"
                     /translation="MSGNIAVDPDKLEQLANDVVTELTDMENKYKDLHVELGQMILQC
                     DPRYSSCFSGVGDAWSSGKALVTKLSDNEIFIRKTGDKFVEQDDILRKLYNAYDKYGT
                     MTSLTALMLTQGKYYGLGLTKFVKQPSGLHTAQHSKLLLDISRAVDSSRYQKAARVLL
                     NPKYLLKKTNRPFSDLVHKKFTKYFPQDTVDFSNSVRSYTKGFLNEAGVRSTLKDVGK
                     TGLRFAKGNAITATLITGATETFGAGVKIAENYAKYQDKPEVLKRENAKAVGNAVNNT
                     IFVAGGATAGAVIGGAIGSFAGPVGTVLLGAAGSYIGGVVGEQIAKYTAGFAEKAALK
                     LKEPIHAVVDTAKKGLESAGKVVKSVNDGIDAANKSIHKGIDSAKKGMEKAKKTADSL
                     IHGATHFLKGKFSFG*"
                     /label="yfjB CDS"
     gene            complement(812368..813591)
                     /gene="yfjB"
                     /locus_tag="BSU_08160"
                     /old_locus_tag="BSU08160"
                     /label="yfjB gene"
     CDS             complement(813597..813911)
                     /gene="yfjA"
                     /locus_tag="BSU_08170"
                     /old_locus_tag="BSU08170"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved hypothetical protein"
                     /protein_id="NP_388698.1"
                     /db_xref="EnsemblGenomes-Gn:BSU08170"
                     /db_xref="EnsemblGenomes-Tr:CAB12646"
                     /db_xref="InterPro:IPR010310"
                     /db_xref="InterPro:IPR036689"
                     /db_xref="SubtiList:BG12903"
                     /db_xref="UniProtKB/Swiss-Prot:O31558"
                     /translation="MDSYKVIELANKYSAAAEEVRSSKMLLESRLSALGDAWQGKARD
                     SFDQDFEETKAAYDQFEQELLETSQELKAAAVKIEERKAEIARMEELERKAREERHKL
                     GR*"
                     /label="yfjA CDS"
     gene            complement(813597..813911)
                     /gene="yfjA"
                     /locus_tag="BSU_08170"
                     /old_locus_tag="BSU08170"
                     /label="yfjA gene"
     promotor_-10    complement(813959..813978)
                     /Source="Nicolas_upshift_promotors"
                     /id="U623"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.852147852147852"
                     /psig="0.992007992007992"
                     /xcortree=2761
                     /SigmaFactorBS="cgcccttccaattcttatgaaaaggttcttttgtacGATTcg
                     gatacatgccgaATTATTTATAATCATTTATAtaaaacatccaattgtgcgtgaattt
                     a"
                     /listShort="yfjA, yfjB, yfjC, yfjD, S282, yfjE, yfjF"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(813972)
                     /Source="Nicolas_upshifts"
                     /id="U623"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.852147852147852"
                     /psig="0.992007992007992"
                     /xcortree=2761
                     /SigmaFactorBS="cgcccttccaattcttatgaaaaggttcttttgtacGATTcg
                     gatacatgccgaATTATTTATAATCATTTATAtaaaacatccaattgtgcgtgaattt
                     a"
                     /listShort="yfjA, yfjB, yfjC, yfjD, S282, yfjE, yfjF"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(813993..813996)
                     /Source="Nicolas_upshift_promotors"
                     /id="U623"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.852147852147852"
                     /psig="0.992007992007992"
                     /xcortree=2761
                     /SigmaFactorBS="cgcccttccaattcttatgaaaaggttcttttgtacGATTcg
                     gatacatgccgaATTATTTATAATCATTTATAtaaaacatccaattgtgcgtgaattt
                     a"
                     /listShort="yfjA, yfjB, yfjC, yfjD, S282, yfjE, yfjF"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     misc_feature    814203..814222
                     /Source="Nicolas_upshift_promotors"
                     /id="U624"
                     /multdbtbs="SigA"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.258741258741259"
                     /psig="0.684315684315684"
                     /xcortree=342
                     /SigmaFactorBS="cactaaagttgatcaaatgacctaagtgcgccaaacgtgtta
                     cgggacgagctatctCATGGTATAAATGGAATTGTaaacgttatcaaggaggtcgtca
                     t"
                     /listShort="malA, malR, malP, malQ"
                     /GFF_Attribute="listLong"
                     /label="promotor_single_box"
                     /note="Geneious type: promotor_single_box"
     upshifts        814206
                     /Source="Nicolas_upshifts"
                     /id="U624"
                     /multdbtbs="SigA"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.258741258741259"
                     /psig="0.684315684315684"
                     /xcortree=342
                     /SigmaFactorBS="cactaaagttgatcaaatgacctaagtgcgccaaacgtgtta
                     cgggacgagctatctCATGGTATAAATGGAATTGTaaacgttatcaaggaggtcgtca
                     t"
                     /listShort="malA, malR, malP, malQ"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             814247..815596
                     /gene="malA"
                     /locus_tag="BSU_08180"
                     /old_locus_tag="BSU08180"
                     /EC_number="3.2.1.122"
                     /function="16.11: Scavenge (Catabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:9765262, 10329789, 11489864, 15341727, 15670594,
                     16707683, 17676871, 20698522"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 9765262, 10329789,
                     11489864, 15341727, 15670594, 16707683, 17676871,
                     20698522; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="6-phospho-alpha-glucosidase"
                     /protein_id="NP_388699.1"
                     /db_xref="EnsemblGenomes-Gn:BSU08180"
                     /db_xref="EnsemblGenomes-Tr:CAB12647"
                     /db_xref="GOA:P54716"
                     /db_xref="InterPro:IPR001088"
                     /db_xref="InterPro:IPR015955"
                     /db_xref="InterPro:IPR019802"
                     /db_xref="InterPro:IPR022616"
                     /db_xref="InterPro:IPR036291"
                     /db_xref="PDB:1U8X"
                     /db_xref="SubtiList:BG11839"
                     /db_xref="UniProtKB/Swiss-Prot:P54716"
                     /translation="MKKKSFSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDK
                     ERQDRIAGACDVFIREKAPDIEFAATTDPEEAFTDVDFVMAHIRVGKYAMRALDEQIP
                     LKYGVVGQETCGPGGIAYGMRSIGGVLEILDYMEKYSPDAWMLNYSNPAAIVAEATRR
                     LRPNSKILNICDMPVGIEDRMAQILGLSSRKEMKVRYYGLNHFGWWTSIQDQEGNDLM
                     PKLKEHVSQYGYIPKTEAEAVEASWNDTFAKARDVQAADPDTLPNTYLQYYLFPDDMV
                     KKSNPNHTRANEVMEGREAFIFSQCDMITREQSSENSEIKIDDHASYIVDLARAIAYN
                     TGERMLLIVENNGAIANFDPTAMVEVPCIVGSNGPEPITVGTIPQFQKGLMEQQVSVE
                     KLTVEAWAEKSFQKLWQALILSKTVPNARVARLILEDLVEANKDFWPELDQSPTRIS*
                     "
                     /label="malA CDS"
     gene            814247..815596
                     /gene="malA"
                     /locus_tag="BSU_08180"
                     /old_locus_tag="BSU08180"
                     /label="malA gene"
     misc_feature    815625..815644
                     /Source="Nicolas_upshift_promotors"
                     /id="U625"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.97902097902098"
                     /psig=1
                     /xcortree=3083
                     /SigmaFactorBS="cttgatcaaagcccaacccgcatatcataaatgaaattcccc
                     cattttcgaatctgtaATTGTATATAATAGAAAGAAaatggggggatctgatatgcag
                     c"
                     /listShort="malR, malP"
                     /GFF_Attribute="listLong"
                     /label="promotor_single_box"
                     /note="Geneious type: promotor_single_box"
     upshifts        815627
                     /Source="Nicolas_upshifts"
                     /id="U625"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.97902097902098"
                     /psig=1
                     /xcortree=3083
                     /SigmaFactorBS="cttgatcaaagcccaacccgcatatcataaatgaaattcccc
                     cattttcgaatctgtaATTGTATATAATAGAAAGAAaatggggggatctgatatgcag
                     c"
                     /listShort="malR, malP"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             815661..816425
                     /gene="malR"
                     /locus_tag="BSU_08190"
                     /old_locus_tag="BSU08190"
                     /function="16.3: Control"
                     /experiment="publication(s) with functional evidences,
                     PMID:11489864, 16707683, 22720735"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 11489864, 16707683,
                     22720735; Product type r: regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional activator of the Mal operon"
                     /protein_id="NP_388700.1"
                     /db_xref="EnsemblGenomes-Gn:BSU08190"
                     /db_xref="EnsemblGenomes-Tr:CAB12648"
                     /db_xref="GOA:P54717"
                     /db_xref="InterPro:IPR000281"
                     /db_xref="InterPro:IPR001347"
                     /db_xref="InterPro:IPR009057"
                     /db_xref="InterPro:IPR035472"
                     /db_xref="InterPro:IPR036388"
                     /db_xref="SubtiList:BG11847"
                     /db_xref="UniProtKB/Swiss-Prot:P54717"
                     /translation="MQLEELINQHYSKLNDNDFHILKYILNHKHTCYHLGIDALAKAC
                     SVSRSSILRLAQKLGFSGYSEFRVFLKWEDQPEEGESMSFEKLLDDIEANLKFLRTKD
                     MTDMCQLIDAADRIFVYGSGNAQKICARDLQRMFIPRHRYLILIEDTNEFNLMRDDFK
                     VNDLFIIISLSGETPELIPQARMLSAKGIPFISITNLKNNVLAQLTPHNLYATSKPVT
                     LSDRTEIVAFAPFFLVGEALFRAYVDYKEAEKNDNE*"
                     /label="malR CDS"
     gene            815661..816425
                     /gene="malR"
                     /locus_tag="BSU_08190"
                     /old_locus_tag="BSU08190"
                     /label="malR gene"
     promotor_-10    complement(815805..815819)
                     /Source="Nicolas_upshift_promotors"
                     /id="U626"
                     /multdbtbs="-"
                     /comp="M9"
                     /sig="Sig-"
                     /pcomp="0.454545454545455"
                     /psig="0.454545454545455"
                     /xcortree=655
                     /SigmaFactorBS="cttcttccggctgatcttcccactttaaaaagacgcgaaatt
                     cactgtaaccgcTGAAACCgagcttttgggcaagCCGTAAAATTGAGGAacgcgatac
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     promotor_-35    complement(815835..815841)
                     /Source="Nicolas_upshift_promotors"
                     /id="U626"
                     /multdbtbs="-"
                     /comp="M9"
                     /sig="Sig-"
                     /pcomp="0.454545454545455"
                     /psig="0.454545454545455"
                     /xcortree=655
                     /SigmaFactorBS="cttcttccggctgatcttcccactttaaaaagacgcgaaatt
                     cactgtaaccgcTGAAACCgagcttttgggcaagCCGTAAAATTGAGGAacgcgatac
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     upshifts        complement(815835)
                     /Source="Nicolas_upshifts"
                     /id="U626"
                     /multdbtbs="-"
                     /comp="M9"
                     /sig="Sig-"
                     /pcomp="0.454545454545455"
                     /psig="0.454545454545455"
                     /xcortree=655
                     /SigmaFactorBS="cttcttccggctgatcttcccactttaaaaagacgcgaaatt
                     cactgtaaccgcTGAAACCgagcttttgggcaagCCGTAAAATTGAGGAacgcgatac
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             816440..818023
                     /gene="malP"
                     /locus_tag="BSU_08200"
                     /old_locus_tag="BSU08200"
                     /function="16.1: Circulate"
                     /experiment="publication(s) with functional evidences,
                     PMID:15849754, 16707683, 16850406, 22720735"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 15849754, 16707683,
                     16850406, 22720735; Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphotransferase system (PTS)
                     maltose-specificenzyme IICB component"
                     /protein_id="NP_388701.1"
                     /db_xref="EnsemblGenomes-Gn:BSU08200"
                     /db_xref="EnsemblGenomes-Tr:CAB12649"
                     /db_xref="GOA:P54715"
                     /db_xref="InterPro:IPR001996"
                     /db_xref="InterPro:IPR003352"
                     /db_xref="InterPro:IPR004719"
                     /db_xref="InterPro:IPR010975"
                     /db_xref="InterPro:IPR013013"
                     /db_xref="InterPro:IPR018113"
                     /db_xref="InterPro:IPR036878"
                     /db_xref="SubtiList:BG11848"
                     /db_xref="UniProtKB/Swiss-Prot:P54715"
                     /translation="MMQKIQRFGSAMFVPVLLFAFAGIIVGISTLFKNKTLMGPLADP
                     DGFWYQCWYIIEQGGWTVFNQMPLLFAIGIPVALAKKAQARACLEALTVYLTFNYFVS
                     AILTVWGGAFGVDMNQEVGGTSGLTMIAGIKTLDTNIIGAIFISSIVVFLHNRYFDKK
                     LPDFLGIFQGSTYIVMISFFIMIPIALAVSYIWPMVQSGIGSLQSFLVASGAVGVWIY
                     TFLERILIPTGLHHFIYTPFIYGPAVAEGGIVTYWAQHLGEYSQSAKPLKELFPQGGF
                     ALHGNSKIFGIPGIALAFYVTAKKEKKKLVAGLLIPVTLTAIVAGITEPIEFTFLFIS
                     PFLFAVHAVLAATMSTVMYMAGVVGNMGGGLIEAVTLNWIPLFGSHGMTYVYQILIGL
                     SFTAIYFFVFRFLILKFNIATPGREKDEQQETKLYSKKEYRERKNKDETASAAETADD
                     TAFLYIEALGGKDNITEVTNCATRLRVSVKDETKVEPDSVFRALGAHGVVRNGKAFQV
                     IIGLSVPQMRERVEKILNQ*"
                     /label="malP CDS"
     gene            816440..818023
                     /gene="malP"
                     /locus_tag="BSU_08200"
                     /old_locus_tag="BSU08200"
                     /label="malP gene"
     downshifts      818003
                     /Source="Nicolas_upshifts"
                     /id="D409"
                     /incds=0
                     /nref=23
                     /ntot=46
                     /MaxReadThrough="3.26652"
                     /MaxDrop="4.69656"
                     /score="8.65399085"
                     /energy="-10.9"
                     /TU="U624"
                     /idTUdmin="U625"
                     /TUdmin=836
                     /isTUend="FALSE"
                     /label="downshifts"
     promotor_-35    818052..818059
                     /Source="Nicolas_upshift_promotors"
                     /id="U627"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.986013986013986"
                     /psig=1
                     /xcortree=2032
                     /SigmaFactorBS="aaagactgccctccttttcgggagggttttCGTTTGCCgtca
                     aaaagaccgcCATAGTAAAGTAAAGAAAGAgacaatcgagtaaaaaggggtttggagg
                     c"
                     /listShort="malQ, yfiC"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    818074..818093
                     /Source="Nicolas_upshift_promotors"
                     /id="U627"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.986013986013986"
                     /psig=1
                     /xcortree=2032
                     /SigmaFactorBS="aaagactgccctccttttcgggagggttttCGTTTGCCgtca
                     aaaagaccgcCATAGTAAAGTAAAGAAAGAgacaatcgagtaaaaaggggtttggagg
                     c"
                     /listShort="malQ, yfiC"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        818082
                     /Source="Nicolas_upshifts"
                     /id="U627"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.986013986013986"
                     /psig=1
                     /xcortree=2032
                     /SigmaFactorBS="aaagactgccctccttttcgggagggttttCGTTTGCCgtca
                     aaaagaccgcCATAGTAAAGTAAAGAAAGAgacaatcgagtaaaaaggggtttggagg
                     c"
                     /listShort="malQ, yfiC"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             818129..819850
                     /gene="yfiB"
                     /locus_tag="BSU_08210"
                     /old_locus_tag="BSU08210"
                     /function="16.1: Circulate"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 16707683; Product type
                     t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="putative xenobiotic ABC transporter subunit
                     (ATP-binding protein)"
                     /protein_id="NP_388702.1"
                     /db_xref="EnsemblGenomes-Gn:BSU08210"
                     /db_xref="EnsemblGenomes-Tr:CAB12650"
                     /db_xref="GOA:P54718"
                     /db_xref="InterPro:IPR003439"
                     /db_xref="InterPro:IPR003593"
                     /db_xref="InterPro:IPR011527"
                     /db_xref="InterPro:IPR017871"
                     /db_xref="InterPro:IPR027417"
                     /db_xref="InterPro:IPR036640"
                     /db_xref="SubtiList:BG11849"
                     /db_xref="UniProtKB/Swiss-Prot:P54718"
                     /translation="MQKALSFLKPYSLLAGIALILMLTELAVELMQPLLIAKIIDDGI
                     LKQDLRHVWIWGTVMIGLTVLSFAAGMLNSFYAAHVSQSFSYDTRKGLFQKIQSFSYS
                     TFGQFSSSSYITRLTNDVTQVQNMIFMSLRFMLRAPLMIAGGIVLSLAVNVKLGFFLL
                     VTIPILILFLLWVLRKGGALFRSVQKRLDQVNTIMQENLIAIKLIKALLRGSHEVKRF
                     IKANTRLMEKTVSAFQLVEFTMPVLMLLMNLCILLILWAGSYSITSGSTQVGDVVAII
                     NYATRITGALSMFPFLIMIFTRAKASGDRIGEVLETEGDEREEGTISDRLSGRIEFQH
                     VSFRYPEMDREALRNVSFSAKPRETIAILGATGSGKSTLFQLIPRLYQPDSGRIYIDE
                     KPVQDIPAEGLRRQIGYVPQEVLLFSGTIKENIAWGKENASLDEIMDAAKLAQIHETI
                     LKLPNGYDTVLGQRGVNLSGGQKQRISIARALIRKPAILLLDDSTSALDLQTEAKLLE
                     AISTYHCTTLIITQKITTAMKADQILLLEDGELIEKGTHSELLSESQLYKRIYESQFG
                     REGSESC*"
                     /label="yfiB CDS"
     gene            818129..819850
                     /gene="yfiB"
                     /locus_tag="BSU_08210"
                     /old_locus_tag="BSU08210"
                     /label="yfiB gene"
     CDS             819844..821658
                     /gene="yfiC"
                     /locus_tag="BSU_08220"
                     /old_locus_tag="BSU08220"
                     /function="16.1: Circulate"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="putative ABC transporter (ATP-binding protein)"
                     /protein_id="NP_388703.1"
                     /db_xref="EnsemblGenomes-Gn:BSU08220"
                     /db_xref="EnsemblGenomes-Tr:CAB12651"
                     /db_xref="GOA:P54719"
                     /db_xref="InterPro:IPR003439"
                     /db_xref="InterPro:IPR003593"
                     /db_xref="InterPro:IPR011527"
                     /db_xref="InterPro:IPR017871"
                     /db_xref="InterPro:IPR027417"
                     /db_xref="InterPro:IPR036640"
                     /db_xref="SubtiList:BG11850"
                     /db_xref="UniProtKB/Swiss-Prot:P54719"
                     /translation="MLKDIRKPFQYPKLPIDKKEGAKKRAKAKDTKGTLRRIWSYLAE
                     RKGLLILVMLMVVISAIFGLLGPFVIGKAIDHFIVGKTVSGLIPVLLLLLAIYIIQSL
                     SLWFQNYWMITISQGTVFRMRSELFTHLHELPIPFFDKQRHGELMSRVTNDIENVSST
                     LNTSVIQILSSVITFVGTIAVMLYMSPLLTLITLTIIPVMAASLKWITNRTGKLFKEQ
                     QKNLGDLNGYIEESVSGAKVIKAYSREKQITAEFLEKNAALKTSGFWAQTISGFIPKV
                     MNSLNNLSFTMIAAIGGLFALKGWISIGSIVVFAEYSRQFTRPLNDLANQFNTMLSAI
                     AGAERVFDVLDEKEEREDEKNAVHQPIQTGSIEFRDVSFGYDKGQQTLKHLQFTVPAG
                     QSIAFVGPTGAGKTTVTNLLARFYEPNDGKILIDGTDIKTLTRASLRKNMGFVLQDSF
                     LFQGTIRENIRYGRLDASDQEVEAAAKTANAHSFIERLPKGYDTVLTQNGSGISQGQK
                     QLISIARAVLADPVLLILDEATSNIDTVTEVNIQEALARLMEGRTSVIIAHRLNTIQR
                     ADQIVVLKNGEMIEKGSHDELIRQKGFYSDLYESQFEK*"
                     /label="yfiC CDS"
     gene            819844..821658
                     /gene="yfiC"
                     /locus_tag="BSU_08220"
                     /old_locus_tag="BSU08220"
                     /label="yfiC gene"
     downshifts      821633
                     /Source="Nicolas_upshifts"
                     /id="D410"
                     /incds=0
                     /nref=103
                     /ntot=190
                     /MaxReadThrough="2.4559"
                     /MaxDrop="5.61906"
                     /score="24.4395842"
                     /energy="-11"
                     /TU="NA"
                     /idTUdmin="U627"
                     /TUdmin=0
                     /isTUend="TRUE"
                     /label="downshifts"
     promotor_-35    821740..821747
                     /Source="Nicolas_upshift_promotors"
                     /id="U628"
                     /multdbtbs="-"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp="0.75024975024975"
                     /psig=1
                     /xcortree=1845
                     /SigmaFactorBS="cttttatttcattttcgtaaaatgtaacaaaattaCTTGACG
                     TaaacaagttatgtATATATACTAGCTTACATTAagtaagtgataacatttatcaagg
                     a"
                     /listShort="catD, catE"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    821761..821780
                     /Source="Nicolas_upshift_promotors"
                     /id="U628"
                     /multdbtbs="-"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp="0.75024975024975"
                     /psig=1
                     /xcortree=1845
                     /SigmaFactorBS="cttttatttcattttcgtaaaatgtaacaaaattaCTTGACG
                     TaaacaagttatgtATATATACTAGCTTACATTAagtaagtgataacatttatcaagg
                     a"
                     /listShort="catD, catE"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        821765
                     /Source="Nicolas_upshifts"
                     /id="U628"
                     /multdbtbs="-"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp="0.75024975024975"
                     /psig=1
                     /xcortree=1845
                     /SigmaFactorBS="cttttatttcattttcgtaaaatgtaacaaaattaCTTGACG
                     TaaacaagttatgtATATATACTAGCTTACATTAagtaagtgataacatttatcaagg
                     a"
                     /listShort="catD, catE"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             821813..822217
                     /gene="catD"
                     /locus_tag="BSU_08230"
                     /old_locus_tag="BSU08230"
                     /EC_number="1.13.11.2"
                     /function="16.11: Scavenge (Catabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:15849754, 16872404, 16850406, 17407181, 20639328"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 15849754, 16872404,
                     16850406, 17407181, 20639328; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="catechol-2,3-dioxygenase membrane subunit"
                     /protein_id="NP_388704.1"
                     /db_xref="EnsemblGenomes-Gn:BSU08230"
                     /db_xref="EnsemblGenomes-Tr:CAB12652"
                     /db_xref="GOA:P54720"
                     /db_xref="InterPro:IPR032808"
                     /db_xref="SubtiList:BG11851"
                     /db_xref="UniProtKB/Swiss-Prot:P54720"
                     /translation="MNKSFEIGTLLLRVITGIIFFVHGLSKFQGMEGTIQFFGSIGLP
                     SFMAYVIAAIELIGGVLVFFGLATRIVGVLFALTLIGAIITVKLKAPFMGNAEFDYLL
                     LLTSIHLALTGSRFLALDPFVFKGKKNGNVSA*"
                     /label="catD CDS"
     gene            821813..822217
                     /gene="catD"
                     /locus_tag="BSU_08230"
                     /old_locus_tag="BSU08230"
                     /label="catD gene"
     CDS             822235..823092
                     /gene="catE"
                     /locus_tag="BSU_08240"
                     /old_locus_tag="BSU08240"
                     /EC_number="1.13.11.2"
                     /function="16.11: Scavenge (Catabolism)"
                     /function="16.8: Protect"
                     /experiment="publication(s) with functional evidences,
                     PMID:17407181, 16872404"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 17407181, 16872404;
                     Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="catechol-2,3-dioxygenase subunit"
                     /protein_id="NP_388705.2"
                     /db_xref="EnsemblGenomes-Gn:BSU08240"
                     /db_xref="EnsemblGenomes-Tr:CAB12653"
                     /db_xref="GOA:P54721"
                     /db_xref="InterPro:IPR000486"
                     /db_xref="InterPro:IPR004360"
                     /db_xref="InterPro:IPR029068"
                     /db_xref="SubtiList:BG11852"
                     /db_xref="UniProtKB/Swiss-Prot:P54721"
                     /translation="MTSIHEDTHIGYAKLTIRSLERSLQFYCNVIGFQVLKKTDRQAE
                     LTADGKRVLLILEENPSAVVLPERSVTGLYHFAILLPDRKELGIALARLIEHGIAIGH
                     GDHAVSEALYLSDPDGNGIEMYADRPRSTWQRDREGNYVMTTTAVDIEGLLEEAGDER
                     KTSLPNDTIIGHIHLHVSDLKEAKAFYTDVLGFDIVGNYAGMSALFVSAGGYHHHIGL
                     NIWAGRNAPPKPTNASGLDYYTVVLPHQEELDLVANRVKHAGYSIEETENSFRVKDPV
                     SGAYITFVI*"
                     /label="catE CDS"
     gene            822235..823092
                     /gene="catE"
                     /locus_tag="BSU_08240"
                     /old_locus_tag="BSU08240"
                     /label="catE gene"
     downshifts      823079
                     /Source="Nicolas_upshifts"
                     /id="D411"
                     /incds=0
                     /nref=4
                     /ntot=21
                     /MaxReadThrough="0.66359"
                     /MaxDrop="3.74886"
                     /score="50.8573531"
                     /energy="-19.7"
                     /TU="NA"
                     /idTUdmin="U628"
                     /TUdmin=16
                     /isTUend="TRUE"
                     /label="downshifts"
     CDS             823186..824130
                     /gene="yfiF"
                     /locus_tag="BSU_08250"
                     /old_locus_tag="BSU08250"
                     /function="16.3: Control"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 10704478; Product type
                     r: regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="putative transcriptional regulator (AraC/XylS
                     family; cupin family)"
                     /protein_id="NP_388706.1"
                     /db_xref="EnsemblGenomes-Gn:BSU08250"
                     /db_xref="EnsemblGenomes-Tr:CAB12654"
                     /db_xref="GOA:P54722"
                     /db_xref="InterPro:IPR003313"
                     /db_xref="InterPro:IPR009057"
                     /db_xref="InterPro:IPR018060"
                     /db_xref="InterPro:IPR018062"
                     /db_xref="SubtiList:BG11853"
                     /db_xref="UniProtKB/Swiss-Prot:P54722"
                     /translation="MELNHLVTGKIALNQYVHRLEQKDVSFYVHYWGAMTNHYNTLLH
                     KHSFYEICYVVRGEGYYLEGDRTYPLREQTIFLSKPEHLHQIKSETGLFLFYVAFELS
                     EDQSSAEWIKVMEEVKQSPFITMQLKDGEPPGLLWKTLMLQAAQPVNAFDKEILSHLS
                     HALILSLIQTFLPYAQRPKQKQPIHTSSALLTEVKLHIKDNLSQPLKLTDVASHFHIS
                     GRHLSRLFAAELGVSYSEFVQNEKINKAAELLKSTNLSIKEIAEEIGFSVHYFTRVFS
                     AKIGSSPGLFRSLYKDSKMTAFQINKPFQKIEQAKPHE*"
                     /label="yfiF CDS"
     gene            823186..824130
                     /gene="yfiF"
                     /locus_tag="BSU_08250"
                     /old_locus_tag="BSU08250"
                     /label="yfiF gene"
     downshifts      complement(823997)
                     /Source="Nicolas_upshifts"
                     /id="D412"
                     /incds=1
                     /nref=1
                     /ntot=2
                     /MaxReadThrough="-0.20031"
                     /MaxDrop="3.51831"
                     /score="-4.19869956"
                     /energy="-9.5"
                     /TU="NA"
                     /idTUdmin="U632"
                     /TUdmin=9372
                     /isTUend="FALSE"
                     /label="downshifts"
     promotor_no_box complement(824045..824145)
                     /Source="Nicolas_upshift_promotors"
                     /id="U629"
                     /multdbtbs="-"
                     /comp="M21"
                     /sig="Sig-"
                     /pcomp="0.533466533466533"
                     /psig="0.034965034965035"
                     /xcortree=1481
                     /SigmaFactorBS="tcatttcaggacatcttattcgtgcggcttggcctgttcgat
                     tttttgaaaaggtttattgatttgaaatgcggtcatttttgagtctttataaagggag
                     c"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_no_box"
     upshifts        complement(824085)
                     /Source="Nicolas_upshifts"
                     /id="U629"
                     /multdbtbs="-"
                     /comp="M21"
                     /sig="Sig-"
                     /pcomp="0.533466533466533"
                     /psig="0.034965034965035"
                     /xcortree=1481
                     /SigmaFactorBS="tcatttcaggacatcttattcgtgcggcttggcctgttcgat
                     tttttgaaaaggtttattgatttgaaatgcggtcatttttgagtctttataaagggag
                     c"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             824305..825753
                     /gene="yfiG"
                     /locus_tag="BSU_08260"
                     /old_locus_tag="BSU08260"
                     /function="16.1: Circulate"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 15849754, 16850406;
                     Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="putative sugar/proton transporter"
                     /protein_id="NP_388707.1"
                     /db_xref="EnsemblGenomes-Gn:BSU08260"
                     /db_xref="EnsemblGenomes-Tr:CAB12655"
                     /db_xref="GOA:P54723"
                     /db_xref="InterPro:IPR003663"
                     /db_xref="InterPro:IPR005828"
                     /db_xref="InterPro:IPR005829"
                     /db_xref="InterPro:IPR020846"
                     /db_xref="InterPro:IPR036259"
                     /db_xref="SubtiList:BG11854"
                     /db_xref="UniProtKB/Swiss-Prot:P54723"
                     /translation="MSTKKKEAVIGKESLAHKGLLRTITLVSTFGGLLFGYDTGVING
                     ALPFMATAGQLNLTPVTEGLVASSLLLGAAFGAMFGGRLSDRHGRRKTILYLALLFIA
                     ATLGCTFSPNASVMIAFRFLLGLAVGCASVTVPTFLAEISPAERRGRIVTQNELMIVI
                     GQLLAYTFNAIIGSTMGESANVWRYMLVIATLPAVVLWFGMLIVPESPRWLAAKGRMG
                     DALRVLRQIREDSQAQQEIKEIKHAIEGTAKKAGFHDFQEPWIRRILFIGIGIAIVQQ
                     ITGVNSIMYYGTEILREAGFQTEAALIGNIANGVISVIAVIFGIWLLGKVRRRPMLII
                     GQIGTMTALLLIGILSIVLEGTPALPYVVLSLTILFLAFQQTAISTVTWLMLSEIFPM
                     HVRGLGMGISTFCLWTANFLIGFTFPILLNHIGMSATFFIFVAMNILAILFVKKYVPE
                     TKGRSLEQLEHSFRQYGRRADQEIQNQTTHLS*"
                     /label="yfiG CDS"
     gene            824305..825753
                     /gene="yfiG"
                     /locus_tag="BSU_08260"
                     /old_locus_tag="BSU08260"
                     /label="yfiG gene"
     CDS             825780..826721
                     /gene="yfiH"
                     /locus_tag="BSU_08270"
                     /old_locus_tag="BSU08270"
                     /function="16.11: Scavenge (Catabolism)"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative sugar-phosphate epimerase/isomerase"
                     /protein_id="NP_388708.1"
                     /db_xref="EnsemblGenomes-Gn:BSU08270"
                     /db_xref="EnsemblGenomes-Tr:CAB12656"
                     /db_xref="InterPro:IPR011418"
                     /db_xref="InterPro:IPR013022"
                     /db_xref="InterPro:IPR036237"
                     /db_xref="SubtiList:BG11855"
                     /db_xref="UniProtKB/Swiss-Prot:P54724"
                     /translation="MKLSYVTDSLGHLPFEDMLNFAAKLGIDTLEMTTGGWSPAPHLN
                     LDELLQSSEKRKEFSQALEKRNMTLCALNCSGNPLDPGELGKSHRDITDKTMELAGLL
                     GVKKVIMMSGLPAGGPDDKVPNWITYTVSWPPVLKDILNYQWEDVAIPYWKKLVKKAE
                     ACGVGKIALENFSSQLVYNPETLFRLRNAVGPMVGLNLDPSHLLWMGADPIIAARELG
                     SAIHHVHGKDVRIERYLSAVNGLLETKEVTDPANRAWNYVAVGCGQDLQWWKEFFSVV
                     KMMGYEGEVSLEMEDLTMSPEAGIRTSVEALKQTISQ*"
                     /label="yfiH CDS"
     gene            825780..826721
                     /gene="yfiH"
                     /locus_tag="BSU_08270"
                     /old_locus_tag="BSU08270"
                     /label="yfiH gene"
     CDS             826731..827912
                     /gene="yfiI"
                     /locus_tag="BSU_08280"
                     /old_locus_tag="BSU08280"
                     /EC_number="1.-.-.-"
                     /function="16.11: Scavenge (Catabolism)"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 26438878; Product type
                     e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative oxidoreductase"
                     /protein_id="NP_388709.1"
                     /db_xref="EnsemblGenomes-Gn:BSU08280"
                     /db_xref="EnsemblGenomes-Tr:CAB12657"
                     /db_xref="GOA:P94437"
                     /db_xref="InterPro:IPR000683"
                     /db_xref="InterPro:IPR004104"
                     /db_xref="InterPro:IPR036291"
                     /db_xref="SubtiList:BG12214"
                     /db_xref="UniProtKB/Swiss-Prot:P94437"
                     /translation="MMLNGERIISKPLRWAMVGGGRLSQVGYKHRIGALRDNTAFQLT
                     AGAFDIDAERGKDFGVNLGVDAERCYPNYQTMFAEEAKRQDGIEVVSIATPNGTHYEI
                     CKAALEAGVHVICEKPLFFTSAEGQEIKALAEKKGKIVGVTYGFSGNQMLLQMRAMIE
                     QGMIGDIRVVDLQYTHGFCATDEGEKISAAQKWRVDPAIAGPSFVLGDLSTHTYYMSQ
                     LIMPKMKIKELLCDRQSFVGSRAPLEDNAHVLMHYENGAVGTMWTSSINAGCMDGHRI
                     RIVGSKASIEWWDSKPNELTYEVQGEPGQTLVRGMPYLDDVCNADERLGALHSEGLSE
                     AWANIYLKFAIAIDAKNREDEEILNNLVYPDIDAGIEGIRWIENCVRSANQGSVWVEF
                     K*"
                     /label="yfiI CDS"
     gene            826731..827912
                     /gene="yfiI"
                     /locus_tag="BSU_08280"
                     /old_locus_tag="BSU08280"
                     /label="yfiI gene"
     downshifts      827902
                     /Source="Nicolas_upshifts"
                     /id="D413"
                     /incds=0
                     /nref=40
                     /ntot=113
                     /MaxReadThrough="0.88387"
                     /MaxDrop="5.80704"
                     /score="14.819468"
                     /energy="-13"
                     /TU="NA"
                     /idTUdmin="U630"
                     /TUdmin="-2003"
                     /isTUend="FALSE"
                     /label="downshifts"
     promotor_-35    827972..827978
                     /Source="Nicolas_upshift_promotors"
                     /id="U630"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.517482517482518"
                     /psig="0.918081918081918"
                     /xcortree=2137
                     /SigmaFactorBS="cggtttttattttccagaaacTCCTGTCaaaaatgccctgag
                     GCAGGTATGATAAGAAGGGAattgggtatcgggagtgatgagcgtgaaagctcttttt
                     t"
                     /listShort="yfiJ, yfiK"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    827993..828012
                     /Source="Nicolas_upshift_promotors"
                     /id="U630"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.517482517482518"
                     /psig="0.918081918081918"
                     /xcortree=2137
                     /SigmaFactorBS="cggtttttattttccagaaacTCCTGTCaaaaatgccctgag
                     GCAGGTATGATAAGAAGGGAattgggtatcgggagtgatgagcgtgaaagctcttttt
                     t"
                     /listShort="yfiJ, yfiK"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        828011
                     /Source="Nicolas_upshifts"
                     /id="U630"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.517482517482518"
                     /psig="0.918081918081918"
                     /xcortree=2137
                     /SigmaFactorBS="cggtttttattttccagaaacTCCTGTCaaaaatgccctgag
                     GCAGGTATGATAAGAAGGGAattgggtatcgggagtgatgagcgtgaaagctcttttt
                     t"
                     /listShort="yfiJ, yfiK"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             828036..829238
                     /gene="linJ"
                     /locus_tag="BSU_08290"
                     /old_locus_tag="BSU08290"
                     /function="16.12: Sense"
                     /function="16.3: Control"
                     /function="16.5: Explore"
                     /experiment="publication(s) with functional evidences,
                     PMID:11717295, 12618459, 28461449"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 11717295, 12618459,
                     28461449; Product type rc: receptor"
                     /codon_start=1
                     /transl_table=11
                     /product="two-component sensor histidine kinase [LinK]
                     (linearmycin resistance, biofilm formation)"
                     /protein_id="NP_388710.1"
                     /db_xref="EnsemblGenomes-Gn:BSU08290"
                     /db_xref="EnsemblGenomes-Tr:CAB12658"
                     /db_xref="GOA:P94438"
                     /db_xref="InterPro:IPR003594"
                     /db_xref="InterPro:IPR011712"
                     /db_xref="InterPro:IPR036890"
                     /db_xref="SubtiList:BG12215"
                     /db_xref="UniProtKB/Swiss-Prot:P94438"
                     /translation="MKALFFTRMFTLMVSCLMYLSIVKEDNWFGYVFIAAGAAMYAAN
                     HVLLTKETNAIWFCLIDIAIGFSFGFIFPGTGLFIIMLCPVAVAFFLRGFPKRTAWSV
                     LCLSSILFLTVLIRTYAMFGNEFVIDHLTSMTFVVFCGVVGKLIRKLLDAQDTAKQQF
                     QELTESHLALSAAHQELHLYAKQVEELTAIYERNRMAREIHDTVGHKMTALLVQLQLL
                     REWQKRDSQKADETVGVCETLAREALDDVRLSVRTLQTENDPSLIESLKQLTEDFCKN
                     AGVTTEFAVSGDPAIIPLSLHPTLIRTVQEALTNAKRHGGAAACSIQLACTTDSISLV
                     IKDDGKGNPEAALGFGLLNMKKRAAEHGGMIRFESERDQGFTVNAEFSLANKKWSFGP
                     VQQKESLS*"
                     /label="linJ CDS"
     gene            828036..829238
                     /gene="linJ"
                     /locus_tag="BSU_08290"
                     /old_locus_tag="BSU08290"
                     /label="linJ gene"
     CDS             829235..829897
                     /gene="linK"
                     /locus_tag="BSU_08300"
                     /old_locus_tag="BSU08300"
                     /function="16.5: Explore"
                     /function="16.3: Control"
                     /experiment="publication(s) with functional evidences,
                     PMID:11717295, 12618459, 28461449"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 11717295, 12618459,
                     28461449; Product type r: regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="two-component response regulator [LinJ]
                     (linearmycin resistance, biofilm formation)"
                     /protein_id="NP_388711.1"
                     /db_xref="EnsemblGenomes-Gn:BSU08300"
                     /db_xref="EnsemblGenomes-Tr:CAB12659"
                     /db_xref="GOA:P94439"
                     /db_xref="InterPro:IPR000792"
                     /db_xref="InterPro:IPR001789"
                     /db_xref="InterPro:IPR011006"
                     /db_xref="InterPro:IPR016032"
                     /db_xref="InterPro:IPR036388"
                     /db_xref="SubtiList:BG12216"
                     /db_xref="UniProtKB/Swiss-Prot:P94439"
                     /translation="MIKIIITDDQDIVREGLASLLQLREELDVIATARNGQEAFEKAK
                     ELEPDIVLMDIRMPVSNGVEGTKLITSSLPSVKVLMLTTFKDSALIAEALEEGASGYL
                     LKDMSADTIVKAVMTVHSGGMVLPPELTAQMLNEWKREKQLKGINEIEKPNELLDLTE
                     REIEVLAELGYGLNNKEIAEKLYITEGTVKNHVSNIISKLAVRDRTQAAIYSVRYGVS
                     VF*"
                     /label="linK CDS"
     gene            829235..829897
                     /gene="linK"
                     /locus_tag="BSU_08300"
                     /old_locus_tag="BSU08300"
                     /label="linK gene"
     downshifts      829905
                     /Source="Nicolas_upshifts"
                     /id="D414"
                     /incds=0
                     /nref=114
                     /ntot=229
                     /MaxReadThrough="-0.0105699999999995"
                     /MaxDrop="4.23231"
                     /score="20.4785449"
                     /energy="-7.6"
                     /TU="NA"
                     /idTUdmin="U630"
                     /TUdmin=0
                     /isTUend="TRUE"
                     /label="downshifts"
     CDS             830041..830976
                     /gene="bifL"
                     /locus_tag="BSU_08310"
                     /old_locus_tag="BSU08310"
                     /function="16.8: Protect"
                     /function="16.13: Shape"
                     /function="16.1: Circulate"
                     /experiment="publication(s) with functional evidences,
                     PMID:28461449"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 28461449; Product type t:
                     transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter (ATP-binding protein) biofilm
                     formation"
                     /protein_id="NP_388712.2"
                     /db_xref="EnsemblGenomes-Gn:BSU08310"
                     /db_xref="EnsemblGenomes-Tr:CAB12660"
                     /db_xref="GOA:P94440"
                     /db_xref="InterPro:IPR003439"
                     /db_xref="InterPro:IPR003593"
                     /db_xref="InterPro:IPR017871"
                     /db_xref="InterPro:IPR027417"
                     /db_xref="SubtiList:BG12217"
                     /db_xref="UniProtKB/Swiss-Prot:P94440"
                     /translation="MLQAENIKKAYGKKTIVKGISFSLKKGESFGLLGPNGAGKSTTI
                     SMISGLVPHDSGNITVGGYVIGKETAKAKQKIGIVPQEIALYPTLTAHENLMFWGKMY
                     GLTHGEAKKRAAEVLEYVGLTERAKDKIETFSGGMKRRINIGAALMHKPELLIMDEPT
                     VGIDPQSRNHILETVKQLNETGMTVIYTSHYMEEVEFLCDRIGIIDQGEMIAIGTKTD
                     LCSRLGGDTIIQLTVSGINEAFLVAIRSLAHVNDVTVHELELKIDISAAHHEKVVTSL
                     LAEATAHHINLLSLQVQEPNLERLFLNLTGRTLRD*"
                     /label="bifL CDS"
     gene            830041..830976
                     /gene="bifL"
                     /locus_tag="BSU_08310"
                     /old_locus_tag="BSU08310"
                     /label="bifL gene"
     CDS             830989..832179
                     /gene="bifM"
                     /locus_tag="BSU_08320"
                     /old_locus_tag="BSU08320"
                     /function="16.8: Protect"
                     /function="16.13: Shape"
                     /function="16.1: Circulate"
                     /experiment="publication(s) with functional evidences,
                     PMID:15849754, 16850406, 28461449"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 15849754, 16850406,
                     28461449; Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter (permease) biofilm formation"
                     /protein_id="NP_388713.1"
                     /db_xref="EnsemblGenomes-Gn:BSU08320"
                     /db_xref="EnsemblGenomes-Tr:CAB12661"
                     /db_xref="GOA:P94441"
                     /db_xref="InterPro:IPR000412"
                     /db_xref="SubtiList:BG12218"
                     /db_xref="UniProtKB/Swiss-Prot:P94441"
                     /translation="MKKSIWIAWKDVKIRITDRKGFMMLILMPLILTCILGAALGSVV
                     DGGSRIDDIKVGYIQSDQSDTANMFTKDVLKKMKSIKVTKVGSKDKMKKLIDEKKIDV
                     GIVIPNHWEAGKTSAVVNAAPDQTLKSSIIETAASSFIEQYKAVKEAASGSMDYISKT
                     EAVKQGKLDPAQFAEKLAKTLEKETGDKLTIAEKSVGSKAVTSFQYYSAAMLCMFMLF
                     HITVGAKSFLQEKDTETLARMLMTPAQKSVILFGKWLGTYLFAIIQFFIFLIVTINVF
                     GVDWGGNLLLVSVLGLSYAAAVSGISMLLASCISDMKTADAIGGFGIQLLAVLGGSML
                     PLYQFPDVLQSVSKAVPNRWALDGFLSLMEGGGWADLQKPVLLFAAIGFCSLVIGIRR
                     LHTR*"
                     /label="bifM CDS"
     gene            830989..832179
                     /gene="bifM"
                     /locus_tag="BSU_08320"
                     /old_locus_tag="BSU08320"
                     /label="bifM gene"
     CDS             832193..833350
                     /gene="bifN"
                     /locus_tag="BSU_08330"
                     /old_locus_tag="BSU08330"
                     /function="16.8: Protect"
                     /function="16.13: Shape"
                     /function="16.1: Circulate"
                     /experiment="publication(s) with functional evidences,
                     PMID:15849754, 16850406, 28461449"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 15849754, 16850406,
                     28461449; Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter (permease) biofilm formation"
                     /protein_id="NP_388714.1"
                     /db_xref="EnsemblGenomes-Gn:BSU08330"
                     /db_xref="EnsemblGenomes-Tr:CAB12662"
                     /db_xref="GOA:P94442"
                     /db_xref="InterPro:IPR000412"
                     /db_xref="SubtiList:BG12219"
                     /db_xref="UniProtKB/Swiss-Prot:P94442"
                     /translation="MKKILAICGIELSLIFKKPQNYLIMFAAPLLLTFVFGSMLSGND
                     DKVRLAIVDQDDTILSQHYIRQLKAHDDMYVFENMSESKASEKLKQKKIAGIIVISRS
                     FQTQLEKGKHPELIFRHGPELSEAPMVKQYAESALATLNIQVTAAKTASQTAGENWKA
                     AYKTVFAKKHEDIVPAVTRQTLSDKKEGAEASDTASRAAGFSILFVMLTMMGAAGTIL
                     EARKNGVWSRLLTASVSRAEIGAGYVLSFFVIGWIQFGILLLSTHWLFGINWGNPAAV
                     IVLVSLFLLTVVGIGLMIAANVRTPEQQLAFGNLFVIATCMVSGMYWPIDIEPKFMQS
                     IAEFLPQKWAMSGLTEIIANGARVTDILGICGILLAFAAITFAAGLKALRA*"
                     /label="bifN CDS"
     gene            832193..833350
                     /gene="bifN"
                     /locus_tag="BSU_08330"
                     /old_locus_tag="BSU08330"
                     /label="bifN gene"
     promotor_-35    832304..832309
                     /Source="Nicolas_upshift_promotors"
                     /id="U631"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.693306693306693"
                     /psig="0.693306693306693"
                     /xcortree=1182
                     /SigmaFactorBS="atgtttgctgccccgcttttgcttacctttgtatttgggAGT
                     ATGctcagcggcaatgaTGATAAGGTGCGGCTTGCAatcgttgatcaggacgatacga
                     t"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    832324..832342
                     /Source="Nicolas_upshift_promotors"
                     /id="U631"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.693306693306693"
                     /psig="0.693306693306693"
                     /xcortree=1182
                     /SigmaFactorBS="atgtttgctgccccgcttttgcttacctttgtatttgggAGT
                     ATGctcagcggcaatgaTGATAAGGTGCGGCTTGCAatcgttgatcaggacgatacga
                     t"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        832325
                     /Source="Nicolas_upshifts"
                     /id="U631"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.693306693306693"
                     /psig="0.693306693306693"
                     /xcortree=1182
                     /SigmaFactorBS="atgtttgctgccccgcttttgcttacctttgtatttgggAGT
                     ATGctcagcggcaatgaTGATAAGGTGCGGCTTGCAatcgttgatcaggacgatacga
                     t"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     S_feature       complement(833348..833422)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_909123_909197_c"
                     /HighExp="LoTm, Sw, C90, HiOs, BC, MG 45, UNK1, Fru, S1,
                     BI"
                     /AntisenseName="yfiN"
                     /AntisenseCor="-6.3486715356968801E-2"
                     /AntisenseRegPval="-0.5"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.997"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S284"
     downshifts      complement(833391)
                     /Source="Nicolas_upshifts"
                     /id="D415"
                     /incds=0
                     /nref=90
                     /ntot=257
                     /MaxReadThrough="1.41433"
                     /MaxDrop="6.01369"
                     /score="13.7314837"
                     /energy="-11.5"
                     /TU="U632"
                     /idTUdmin="U632"
                     /TUdmin="-22"
                     /isTUend="TRUE"
                     /label="downshifts"
     CDS             complement(833423..833971)
                     /gene="padR"
                     /locus_tag="BSU_08340"
                     /old_locus_tag="BSU08340"
                     /function="16.3: Control"
                     /experiment="publication(s) with functional evidences,
                     PMID:11073918, 17295427, 18326577, 21685295, 23189126,
                     27716049, 28027933"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 11073918, 17295427,
                     18326577, 21685295, 23189126, 27716049, 28027933; Product
                     type r: regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator of phenolic acid
                     decarboxylase"
                     /protein_id="NP_388715.1"
                     /db_xref="EnsemblGenomes-Gn:BSU08340"
                     /db_xref="EnsemblGenomes-Tr:CAB12663"
                     /db_xref="GOA:P94443"
                     /db_xref="InterPro:IPR005149"
                     /db_xref="InterPro:IPR018309"
                     /db_xref="InterPro:IPR036388"
                     /db_xref="InterPro:IPR036390"
                     /db_xref="SubtiList:BG12220"
                     /db_xref="UniProtKB/Swiss-Prot:P94443"
                     /translation="MRVLKYAILGLLRKGELSGYDITSYFKEELGQFWSAKHSQIYPE
                     LKKLTDEGFITFRTTIQGTKLEKKMYTLTDSGKQELHDWLIRHQPIPETVKDEFMLKA
                     YFISCLSRQEASDLFKDQLQKRQAKLSDLQGSYEKLMASAEPMSFSSPDFGHYLVLTK
                     ALEREKNYVSWLESILAMIDKD*"
                     /label="padR CDS"
     gene            complement(833423..833971)
                     /gene="padR"
                     /locus_tag="BSU_08340"
                     /old_locus_tag="BSU08340"
                     /label="padR gene"
     S_feature       complement(833972..834051)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_909747_909826_c"
                     /HighExp="LoTm, Cold, G180, GM-0.2, Oxctl, T5.0H, GM 25,
                     T3.30H, MG 60, T4.0H"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.997"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S285"
     promotor_-10    complement(834040..834059)
                     /Source="Nicolas_upshift_promotors"
                     /id="U632"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.405594405594406"
                     /psig="0.997002997002997"
                     /xcortree=2251
                     /SigmaFactorBS="acaaaccttttatcttcatttccaaagagcccgGTTGTGttc
                     ccttcctcccTTTTCTATAATAAGGGGAATaggcagttagaatcacagttgagcaccg
                     g"
                     /listShort="S285, padR, S284"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(834051)
                     /Source="Nicolas_upshifts"
                     /id="U632"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.405594405594406"
                     /psig="0.997002997002997"
                     /xcortree=2251
                     /SigmaFactorBS="acaaaccttttatcttcatttccaaagagcccgGTTGTGttc
                     ccttcctcccTTTTCTATAATAAGGGGAATaggcagttagaatcacagttgagcaccg
                     g"
                     /listShort="S285, padR, S284"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(834073..834078)
                     /Source="Nicolas_upshift_promotors"
                     /id="U632"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.405594405594406"
                     /psig="0.997002997002997"
                     /xcortree=2251
                     /SigmaFactorBS="acaaaccttttatcttcatttccaaagagcccgGTTGTGttc
                     ccttcctcccTTTTCTATAATAAGGGGAATaggcagttagaatcacagttgagcaccg
                     g"
                     /listShort="S285, padR, S284"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-35    834174..834177
                     /Source="Nicolas_upshift_promotors"
                     /id="U633"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.927072927072927"
                     /psig="0.998001998001998"
                     /xcortree=2321
                     /SigmaFactorBS="tataaaagagatttaaatttaattttcagaaaaaATAGtaac
                     gatattgatttTTTATATATAATAGGAAATTggtggtatgaaaattttttgggggaat
                     a"
                     /listShort="estB"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    834193..834212
                     /Source="Nicolas_upshift_promotors"
                     /id="U633"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.927072927072927"
                     /psig="0.998001998001998"
                     /xcortree=2321
                     /SigmaFactorBS="tataaaagagatttaaatttaattttcagaaaaaATAGtaac
                     gatattgatttTTTATATATAATAGGAAATTggtggtatgaaaattttttgggggaat
                     a"
                     /listShort="estB"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        834200
                     /Source="Nicolas_upshifts"
                     /id="U633"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.927072927072927"
                     /psig="0.998001998001998"
                     /xcortree=2321
                     /SigmaFactorBS="tataaaagagatttaaatttaattttcagaaaaaATAGtaac
                     gatattgatttTTTATATATAATAGGAAATTggtggtatgaaaattttttgggggaat
                     a"
                     /listShort="estB"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             834244..834876
                     /gene="estB"
                     /locus_tag="BSU_08350"
                     /old_locus_tag="BSU08350"
                     /EC_number="3.1.1.3"
                     /function="16.11: Scavenge (Catabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:11029590, 10913700, 21574267"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 11029590, 10913700,
                     21574267; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="secreted esterase / acylglycerol lipase"
                     /protein_id="NP_388716.1"
                     /db_xref="EnsemblGenomes-Gn:BSU08350"
                     /db_xref="EnsemblGenomes-Tr:CAB12664"
                     /db_xref="GOA:Q79F14"
                     /db_xref="InterPro:IPR002918"
                     /db_xref="InterPro:IPR029058"
                     /db_xref="SubtiList:BG11951"
                     /db_xref="UniProtKB/Swiss-Prot:Q79F14"
                     /translation="MKKVLMAFIICLSLILSVLAAPPSGAKAESVHNPVVLVHGISGA
                     SYNFFAIKNYLISQGWQSNKLYAIDFYDKTGNNLNNGPQLASYVDRVLKETGAKKVDI
                     VAHSMGGANTLYYIKYLGGGNKIQNVVTLGGANGLVSSTALPGTDPNQKILYTSIYSL
                     NDQIVINSLSRLQGARNIQLYGIGHIGLLSNSQVNGYIKEGLNGGGLNTN*"
                     /label="estB CDS"
     gene            834244..834876
                     /gene="estB"
                     /locus_tag="BSU_08350"
                     /old_locus_tag="BSU08350"
                     /label="estB gene"
     downshifts      834855
                     /Source="Nicolas_upshifts"
                     /id="D416"
                     /incds=0
                     /nref=7
                     /ntot=100
                     /MaxReadThrough="0.87881"
                     /MaxDrop="2.6151"
                     /score="0.223019698"
                     /energy="-8.5"
                     /TU="NA"
                     /idTUdmin="U633"
                     /TUdmin=88
                     /isTUend="FALSE"
                     /label="downshifts"
     promotor_-35    834991..834996
                     /Source="Nicolas_upshift_promotors"
                     /id="U634"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.492507492507492"
                     /psig="0.984015984015984"
                     /xcortree=3160
                     /SigmaFactorBS="tcatgcatacgtcaatttatgacatcaggcaCTTTTTcaaat
                     agagcggaCATGTTAAGGTACAACCATCgatttctatcaatttgaaataaaaggagcg
                     c"
                     /listShort="yfiQ"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    835010..835029
                     /Source="Nicolas_upshift_promotors"
                     /id="U634"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.492507492507492"
                     /psig="0.984015984015984"
                     /xcortree=3160
                     /SigmaFactorBS="tcatgcatacgtcaatttatgacatcaggcaCTTTTTcaaat
                     agagcggaCATGTTAAGGTACAACCATCgatttctatcaatttgaaataaaaggagcg
                     c"
                     /listShort="yfiQ"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        835020
                     /Source="Nicolas_upshifts"
                     /id="U634"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.492507492507492"
                     /psig="0.984015984015984"
                     /xcortree=3160
                     /SigmaFactorBS="tcatgcatacgtcaatttatgacatcaggcaCTTTTTcaaat
                     agagcggaCATGTTAAGGTACAACCATCgatttctatcaatttgaaataaaaggagcg
                     c"
                     /listShort="yfiQ"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             835065..836153
                     /gene="icaC"
                     /locus_tag="BSU_08360"
                     /old_locus_tag="BSU08360"
                     /function="16.5: Explore"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 2a: Function from experimental evidences
                     in other organisms; PubMedId: 15849754, 16850406,
                     24776724, 25935415, 27303652; Product type t :
                     transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-glucosamine metabolite exporter
                     componentinvolved in biofilm formation"
                     /protein_id="NP_388717.1"
                     /db_xref="EnsemblGenomes-Gn:BSU08360"
                     /db_xref="EnsemblGenomes-Tr:CAB12665"
                     /db_xref="GOA:O31559"
                     /db_xref="InterPro:IPR002656"
                     /db_xref="SubtiList:BG12893"
                     /db_xref="UniProtKB/Swiss-Prot:O31559"
                     /translation="MQIKEIFMIRCISCLSVVLLHIISMVLMLQAEALADISHTVDSF
                     RTLLMFSTPAFIFISEFLLARSYPDGVPDGFLKKRGKVIFVPFLFIAAIDALLMTSAM
                     GGEVTFLAFVQKYLANVFLGNFIGYFILVIFQFYMLHMMFHEYLKKASPKWVLSISFV
                     VTAAYLGYFSAASPAPASEEGGAFPFFWVPFAGWLFYFCLAYYCGKEYKRFLALLNQY
                     RWVVYGAAIASGALVVTVSYVGEIGMISSKRPDIMLYSTSMIFLCFHLFSKMKHVPKI
                     MMFISNYSFSIYLLHAYFMIIGYVLLLNMPEIPAVPAVLLLFAVCTAGPIMTSWALNK
                     FKYGYLFVGKIYQPKQKKVTVEVRDHAG*"
                     /label="icaC CDS"
     gene            835065..836153
                     /gene="icaC"
                     /locus_tag="BSU_08360"
                     /old_locus_tag="BSU08360"
                     /label="icaC gene"
     S_feature       complement(835555..835943)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_911330_911718_c"
                     /HighExp="S6, S8, S7, S5, LBGstat, H2O2, Mt0, Cold, G180,
                     LPhT"
                     /AntisenseName="yfiQ"
                     /AntisenseCor="0.36913176163336098"
                     /AntisenseRegPval="-9.4"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigK"
                     /TUshortPSig="0.976"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S286"
     upshifts        complement(835943)
                     /Source="Nicolas_upshifts"
                     /id="U635"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp="0.976023976023976"
                     /psig="0.976023976023976"
                     /xcortree=1391
                     /SigmaFactorBS="agccggtacggcaggaatTTCGGGCATattcaaaagcaaCAC
                     GTAGCCTATAATCATAAaataggcatgaagcagataaatcgaaaaggaatagttgctg
                     a"
                     /listShort="S286"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-10    complement(835945..835964)
                     /Source="Nicolas_upshift_promotors"
                     /id="U635"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp="0.976023976023976"
                     /psig="0.976023976023976"
                     /xcortree=1391
                     /SigmaFactorBS="agccggtacggcaggaatTTCGGGCATattcaaaagcaaCAC
                     GTAGCCTATAATCATAAaataggcatgaagcagataaatcgaaaaggaatagttgctg
                     a"
                     /listShort="S286"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     promotor_-35    complement(835977..835985)
                     /Source="Nicolas_upshift_promotors"
                     /id="U635"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp="0.976023976023976"
                     /psig="0.976023976023976"
                     /xcortree=1391
                     /SigmaFactorBS="agccggtacggcaggaatTTCGGGCATattcaaaagcaaCAC
                     GTAGCCTATAATCATAAaataggcatgaagcagataaatcgaaaaggaatagttgctg
                     a"
                     /listShort="S286"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             complement(836189..836806)
                     /gene="yfiR"
                     /locus_tag="BSU_08370"
                     /old_locus_tag="BSU08370"
                     /function="16.3: Control"
                     /function="16.8: Protect"
                     /experiment="publication(s) with functional evidences,
                     PMID:16862575"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 16862575; Product type r:
                     regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator (TetR/AcrR family)"
                     /protein_id="NP_388718.1"
                     /db_xref="EnsemblGenomes-Gn:BSU08370"
                     /db_xref="EnsemblGenomes-Tr:CAB12666"
                     /db_xref="GOA:O31560"
                     /db_xref="InterPro:IPR001647"
                     /db_xref="InterPro:IPR009057"
                     /db_xref="InterPro:IPR036271"
                     /db_xref="PDB:1RKT"
                     /db_xref="SubtiList:BG12894"
                     /db_xref="UniProtKB/Swiss-Prot:O31560"
                     /translation="MSPKVTKEHKDKRQAEILEAAKTVFKRKGFELTTMKDVVEESGF
                     SRGGVYLYFSSTEEMFRRIIETGLDEGLRKLDKSAEHQSVWASISSYLDELTEGLRDV
                     ADTLAPVQFEYLVTAWRNEERRQYLEKRYDLFVERFSRLLQKGIDQGEFQPVQPLATI
                     AKFFLNMNDGIIQNALYFDEEKADVSGLAESAKLYLKTVLQADEK*"
                     /label="yfiR CDS"
     gene            complement(836189..836806)
                     /gene="yfiR"
                     /locus_tag="BSU_08370"
                     /old_locus_tag="BSU08370"
                     /label="yfiR gene"
     downshifts      complement(836207)
                     /Source="Nicolas_upshifts"
                     /id="D417"
                     /incds=0
                     /nref=29
                     /ntot=209
                     /MaxReadThrough="2.44114"
                     /MaxDrop="4.07715"
                     /score="22.1532141"
                     /energy="-17.1"
                     /TU="NA"
                     /idTUdmin="U636"
                     /TUdmin=0
                     /isTUend="TRUE"
                     /label="downshifts"
     CDS             complement(836772..838025)
                     /gene="yfiS"
                     /locus_tag="BSU_08380"
                     /old_locus_tag="BSU08380"
                     /function="16.1: Circulate"
                     /function="16.8: Protect"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 9811639, 15849754,
                     16850406, 16862575; Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="putative efflux transporter"
                     /protein_id="NP_388719.1"
                     /db_xref="EnsemblGenomes-Gn:BSU08380"
                     /db_xref="EnsemblGenomes-Tr:CAB12667"
                     /db_xref="GOA:O31561"
                     /db_xref="InterPro:IPR011701"
                     /db_xref="InterPro:IPR020846"
                     /db_xref="InterPro:IPR036259"
                     /db_xref="SubtiList:BG12895"
                     /db_xref="UniProtKB/Swiss-Prot:O31561"
                     /translation="MEKPLFRNQKGLMTLLASQTISSLGDWLHILAVLTLAAFQLHAS
                     PLDMSLLMMSFALPVIVLGPVSGLLADRFDRKTIMFLSEIGRALTVISCVYVSELWQL
                     YVLLSVQSCFSSLFLPAKNGKLKELAPEAHIQQAVSVSSIIDNSSKIFGPALGGTLIA
                     AFSIHSVFYINAGAFFLSAVILFFLPRDAFLQKANTPQEKTAALTSIKEGLQFLKRMP
                     LLLTGLLTACVVLFVLQIGDSQAIILIRSFSGAPPELAGWCMAVSGAGMLLTAAITGR
                     RRITSYLLYFSAGTLLLGLATGGAPFLSGMGIAGITLFIFAFFIMGAAFGLVHIPFQI
                     LVQTTVPVDYSGRVFGAIQSATTLASILGMAGGGVLAEWIGVSLAFLVCGCLLIMIGL
                     ITLIGKKIAESRRYLVTKSNKGAQG*"
                     /label="yfiS CDS"
     gene            complement(836772..838025)
                     /gene="yfiS"
                     /locus_tag="BSU_08380"
                     /old_locus_tag="BSU08380"
                     /label="yfiS gene"
     promotor_-10    complement(836833..836852)
                     /Source="Nicolas_upshift_promotors"
                     /id="U636"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.918081918081918"
                     /psig="0.998001998001998"
                     /xcortree=3148
                     /SigmaFactorBS="tcggtgtatcacttgcttttcttgtctgtggcTGCTTGCTga
                     tcatgattgggTTGATTACACTTATAGGTAAgaaaattgcagaaagcaggcgatatct
                     t"
                     /listShort="yfiR"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(836845)
                     /Source="Nicolas_upshifts"
                     /id="U636"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.918081918081918"
                     /psig="0.998001998001998"
                     /xcortree=3148
                     /SigmaFactorBS="tcggtgtatcacttgcttttcttgtctgtggcTGCTTGCTga
                     tcatgattgggTTGATTACACTTATAGGTAAgaaaattgcagaaagcaggcgatatct
                     t"
                     /listShort="yfiR"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(836866..836873)
                     /Source="Nicolas_upshift_promotors"
                     /id="U636"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.918081918081918"
                     /psig="0.998001998001998"
                     /xcortree=3148
                     /SigmaFactorBS="tcggtgtatcacttgcttttcttgtctgtggcTGCTTGCTga
                     tcatgattgggTTGATTACACTTATAGGTAAgaaaattgcagaaagcaggcgatatct
                     t"
                     /listShort="yfiR"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    complement(838059..838078)
                     /Source="Nicolas_upshift_promotors"
                     /id="U637"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.492507492507492"
                     /psig="0.99100899100899"
                     /xcortree=2727
                     /SigmaFactorBS="cttctattcaatcttctcctttattttacaagaaaaaGATTG
                     TATattgtgtctttttcCCATACAATTAAAAACGACActagtgtcattttaataatca
                     g"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(838077)
                     /Source="Nicolas_upshifts"
                     /id="U637"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.492507492507492"
                     /psig="0.99100899100899"
                     /xcortree=2727
                     /SigmaFactorBS="cttctattcaatcttctcctttattttacaagaaaaaGATTG
                     TATattgtgtctttttcCCATACAATTAAAAACGACActagtgtcattttaataatca
                     g"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(838093..838100)
                     /Source="Nicolas_upshift_promotors"
                     /id="U637"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.492507492507492"
                     /psig="0.99100899100899"
                     /xcortree=2727
                     /SigmaFactorBS="cttctattcaatcttctcctttattttacaagaaaaaGATTG
                     TATattgtgtctttttcCCATACAATTAAAAACGACActagtgtcattttaataatca
                     g"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     misc_feature    838104..838123
                     /Source="Nicolas_upshift_promotors"
                     /id="U638"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.77022977022977"
                     /psig="0.98901098901099"
                     /xcortree=3204
                     /SigmaFactorBS="atgacactagtgtcgtttttaattgtatgggaaaaagacaca
                     atatacaatctttTTCTTGTAAAATAAAGGAGAagattgaatagaagggagaacattc
                     a"
                     /listShort="yfiT"
                     /GFF_Attribute="listLong"
                     /label="promotor_single_box"
                     /note="Geneious type: promotor_single_box"
     upshifts        838109
                     /Source="Nicolas_upshifts"
                     /id="U638"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.77022977022977"
                     /psig="0.98901098901099"
                     /xcortree=3204
                     /SigmaFactorBS="atgacactagtgtcgtttttaattgtatgggaaaaagacaca
                     atatacaatctttTTCTTGTAAAATAAAGGAGAagattgaatagaagggagaacattc
                     a"
                     /listShort="yfiT"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             838149..838685
                     /gene="bstA"
                     /locus_tag="BSU_08390"
                     /old_locus_tag="BSU08390"
                     /function="16.11: Scavenge (Catabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:15581359, 22059487, 24821014, 22720735"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 15581359, 22059487,
                     24821014, 22720735; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="bacillithiol S-transferase"
                     /protein_id="NP_388720.1"
                     /db_xref="EnsemblGenomes-Gn:BSU08390"
                     /db_xref="EnsemblGenomes-Tr:CAB12668"
                     /db_xref="GOA:O31562"
                     /db_xref="InterPro:IPR023774"
                     /db_xref="InterPro:IPR024775"
                     /db_xref="InterPro:IPR034660"
                     /db_xref="PDB:1RXQ"
                     /db_xref="SubtiList:BG12896"
                     /db_xref="UniProtKB/Swiss-Prot:O31562"
                     /translation="MTSVNLSYPIGEYKPRESISKEQKDKWIQVLEEVPAKLKQAVEV
                     MTDSQLDTPYRDGGWTVRQVVHHLADSHMNSYIRFKLSLTEETPAIRPYDEKAWSELK
                     DSKTADPSGSLALLQELHGRWTALLRTLTDQQFKRGFYHPDTKEIITLENALGLYVWH
                     SHHHIAHITELSRRMGWS*"
                     /label="bstA CDS"
     gene            838149..838685
                     /gene="bstA"
                     /locus_tag="BSU_08390"
                     /old_locus_tag="BSU08390"
                     /label="bstA gene"
     CDS             complement(838682..840238)
                     /gene="yfiU"
                     /locus_tag="BSU_08400"
                     /old_locus_tag="BSU08400"
                     /function="16.1: Circulate"
                     /function="16.8: Protect"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 15849754, 16850406;
                     Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="putative efflux transporter"
                     /protein_id="NP_388721.1"
                     /db_xref="EnsemblGenomes-Gn:BSU08400"
                     /db_xref="EnsemblGenomes-Tr:CAB12669"
                     /db_xref="GOA:O31563"
                     /db_xref="InterPro:IPR011701"
                     /db_xref="InterPro:IPR020846"
                     /db_xref="InterPro:IPR036259"
                     /db_xref="SubtiList:BG12897"
                     /db_xref="UniProtKB/Swiss-Prot:O31563"
                     /translation="MSEALTEQKSQKWAISLFTIGVFMAALDNGIISAALTTINESFS
                     VSPSWGSWGITLYTLGLSVSVPIVGKLSDRYGRKKLFLIEVCLFGLGSLLVALSQSFP
                     LFLISRLIQALGGGGIFIIGSSHILATLPKEKQGKALGLLGAMNGMAAVLGPNIGSFL
                     LDWTGSWHWLFLINLPIAVLLVVFGACFIAETKAPEAKRLDAAGIFLLSLSILAVMYG
                     MTNLDGANLLHSLGNPEVYGCIIFGILCFAALISYEKRVEMRGGDPILAYSLLRNHMF
                     QRTLIIGLLSGGLLAAVIFIPSYVEQYLGVPAAKAGYWMTPLALASGIGAWLGGALTD
                     KKGPVKTVILSGIISCAGFALFPLWVTEKWEFVIASVAAGIGFGFLLGAPLNVLVSEA
                     AKTNKGTALGTLSLVRQIGLTLAPTLYAGFITAGFDQIGDEINSRLSDSGYSEKAMQM
                     IPEIDSSEVSSLQEQIERIPVPEVKTAISDAIHASVASGYDHLYAAAAVVSLLVIAAI
                     SIPAFRRQKR*"
                     /label="yfiU CDS"
     gene            complement(838682..840238)
                     /gene="yfiU"
                     /locus_tag="BSU_08400"
                     /old_locus_tag="BSU08400"
                     /label="yfiU gene"
     promotor_-10    complement(840260..840278)
                     /Source="Nicolas_upshift_promotors"
                     /id="U639"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.623376623376623"
                     /psig="0.623376623376623"
                     /xcortree=795
                     /SigmaFactorBS="tgtcatccgcaaactgcgggagcaggctttttttatttgaCA
                     TTtagttcatttaaaatGAATAATATATTTCAAGTGaactaaaaggagttgacgaaaa
                     t"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(840277)
                     /Source="Nicolas_upshifts"
                     /id="U639"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.623376623376623"
                     /psig="0.623376623376623"
                     /xcortree=795
                     /SigmaFactorBS="tgtcatccgcaaactgcgggagcaggctttttttatttgaCA
                     TTtagttcatttaaaatGAATAATATATTTCAAGTGaactaaaaggagttgacgaaaa
                     t"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(840294..840297)
                     /Source="Nicolas_upshift_promotors"
                     /id="U639"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.623376623376623"
                     /psig="0.623376623376623"
                     /xcortree=795
                     /SigmaFactorBS="tgtcatccgcaaactgcgggagcaggctttttttatttgaCA
                     TTtagttcatttaaaatGAATAATATATTTCAAGTGaactaaaaggagttgacgaaaa
                     t"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             complement(840349..840831)
                     /gene="yfiV"
                     /locus_tag="BSU_08410"
                     /old_locus_tag="BSU08410"
                     /function="16.3: Control"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 18990441; Product type
                     r: regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="putative transcriptional regulator (MarR
                     family)"
                     /protein_id="NP_388722.1"
                     /db_xref="EnsemblGenomes-Gn:BSU08410"
                     /db_xref="EnsemblGenomes-Tr:CAB12670"
                     /db_xref="GOA:O31564"
                     /db_xref="InterPro:IPR000835"
                     /db_xref="InterPro:IPR011991"
                     /db_xref="InterPro:IPR036388"
                     /db_xref="InterPro:IPR036390"
                     /db_xref="SubtiList:BG12898"
                     /db_xref="UniProtKB/Swiss-Prot:O31564"
                     /translation="MEYNLHDTTVLNENILSSEEREIWVLYMKVLTSAGLGDVSEWMK
                     LDMSMPQMKVLMLLNNHGTLKVSDIAEKMGASLSNTTGLLDRLEKSGFVKRSHSEEDR
                     RSVVVQLTENAKKIFRGLYEKGHLKLKRSLELLSPEEKQAVYEGLSILSRALENAKKE
                     *"
                     /label="yfiV CDS"
     gene            complement(840349..840831)
                     /gene="yfiV"
                     /locus_tag="BSU_08410"
                     /old_locus_tag="BSU08410"
                     /label="yfiV gene"
     downshifts      complement(840365)
                     /Source="Nicolas_upshifts"
                     /id="D418"
                     /incds=0
                     /nref=58
                     /ntot=177
                     /MaxReadThrough="1.47849"
                     /MaxDrop="4.15907"
                     /score="27.2704527"
                     /energy="-14.2"
                     /TU="NA"
                     /idTUdmin="U640"
                     /TUdmin=0
                     /isTUend="TRUE"
                     /label="downshifts"
     promotor_-10    complement(840856..840875)
                     /Source="Nicolas_upshift_promotors"
                     /id="U640"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.542457542457542"
                     /psig="0.998001998001998"
                     /xcortree=2019
                     /SigmaFactorBS="atttttcggacaaagtcccgcatgcggtttctgctcACTTTC
                     TttcaggagtgaaaaTCGAGTAATATGGTAAGAGGagtgaatgatgaggaagtgatga
                     a"
                     /listShort="yfiV"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(840872)
                     /Source="Nicolas_upshifts"
                     /id="U640"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.542457542457542"
                     /psig="0.998001998001998"
                     /xcortree=2019
                     /SigmaFactorBS="atttttcggacaaagtcccgcatgcggtttctgctcACTTTC
                     TttcaggagtgaaaaTCGAGTAATATGGTAAGAGGagtgaatgatgaggaagtgatga
                     a"
                     /listShort="yfiV"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(840890..840896)
                     /Source="Nicolas_upshift_promotors"
                     /id="U640"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.542457542457542"
                     /psig="0.998001998001998"
                     /xcortree=2019
                     /SigmaFactorBS="atttttcggacaaagtcccgcatgcggtttctgctcACTTTC
                     TttcaggagtgaaaaTCGAGTAATATGGTAAGAGGagtgaatgatgaggaagtgatga
                     a"
                     /listShort="yfiV"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-35    840917..840924
                     /Source="Nicolas_upshift_promotors"
                     /id="U641"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.544455544455544"
                     /psig=1
                     /xcortree=2519
                     /SigmaFactorBS="tgaaagaaagtgagcagaaaccgcatgcgggACTTTGTCcga
                     aaaataacggTAGTGTATAATGAGTTGGAGattattgggggagaggatcgaactagaa
                     t"
                     /listShort="mprF"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    840938..840957
                     /Source="Nicolas_upshift_promotors"
                     /id="U641"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.544455544455544"
                     /psig=1
                     /xcortree=2519
                     /SigmaFactorBS="tgaaagaaagtgagcagaaaccgcatgcgggACTTTGTCcga
                     aaaataacggTAGTGTATAATGAGTTGGAGattattgggggagaggatcgaactagaa
                     t"
                     /listShort="mprF"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        840946
                     /Source="Nicolas_upshifts"
                     /id="U641"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.544455544455544"
                     /psig=1
                     /xcortree=2519
                     /SigmaFactorBS="tgaaagaaagtgagcagaaaccgcatgcgggACTTTGTCcga
                     aaaataacggTAGTGTATAATGAGTTGGAGattattgggggagaggatcgaactagaa
                     t"
                     /listShort="mprF"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             841003..843573
                     /gene="mprF"
                     /locus_tag="BSU_08425"
                     /old_locus_tag="BSU08425"
                     /EC_number="2.3.2.3"
                     /function="16.8: Protect"
                     /experiment="publication(s) with functional evidences,
                     PMID:2139213, 2490162, 12427923, 14702396, 15849754,
                     16299297, 16850406, 17042784, 19074395, 21306448,
                     26261323"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 2139213, 2490162,
                     12427923, 14702396, 15849754, 16299297, 16850406,
                     17042784, 19074395, 21306448, 26261323; Product type e :
                     enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatidylglycerol lysyltransferase involved
                     in tRNA-dependent lysinylation of phospholipids"
                     /protein_id="YP_003097695.1"
                     /db_xref="EnsemblGenomes-Gn:BSU08425"
                     /db_xref="EnsemblGenomes-Tr:CAX52582"
                     /db_xref="GOA:C0H3X7"
                     /db_xref="InterPro:IPR016181"
                     /db_xref="InterPro:IPR022791"
                     /db_xref="InterPro:IPR024320"
                     /db_xref="UniProtKB/Swiss-Prot:C0H3X7"
                     /translation="MLIKKNALSILKIVFPIAVLLFVIYQSKKELTNLSFKRTLMVIN
                     GLERTDLFMLVLIGLLAVAAMSLYDYVLKYSLRLSITNGKVFRVSWIANSFNNVLGFG
                     GLAGVGLRMMFYKEHTKDHKALVKGIAWLTSSMLLGLSVFSIFVAARVLPVDEVIHEK
                     PWLWAVVIGFALILPLSLAVSKIKDRKAGDEENADKVKNPIFAYIGASVVEWLMAGTV
                     IYFALFAMGIHADIRYVFGVFVIAAIGGMISLVPGGFGSFDLLFLLGMEQLGYHQEAI
                     VTSIVLYRLAYSFIPFILGLFFAAGDLTENTMKRLETNPRIAPAIETTNVLLVVQRAV
                     LVRILQGSLSLIVFVAGLIVLASVSLPIDRLTVIPHIPRPALLLFNGLSLSSALILLI
                     LPIELYKRTKRSYTMAITALVGGFVFSFLKGLNISAIFVLPMIIVLLVLLKKQFVREQ
                     ASYTLGQLIFAVALFTVALFNYNLIAGFIWDRMKKVLRHEYFVHSTSHITHATIMAII
                     IVPLFFLIFTVVYHKRTKPIGEKADPERLAAFLNEKGGNALSHLGFLGDKRFYFSSDG
                     NALLLFGKIARRLVVLGDPSGQRESFPLVLEEFLNEAHQKGFSVLFYQIEREDMALYH
                     DFGYNFFKLGEEAYVDLNTFTLTGKKKAGLRAINNRFEREEYTFHVDHPPFSDAFLEE
                     LKQISDEWLGSKKEKGFSLGFFDPSYLQKAPIAYMKNAEGEIVAFANVMPMYQEGEIS
                     VDLMRYRGDAPNGIMDALFIRMFLWAKEEGCTSFNMGMAPLANVGTAFTSFWSERFAA
                     VIFNNVRYMYSFSGLRAFKEKYKPEWRGKYLAYRKNRSLSVTMFLVTRLIGKSKKDSV
                     *"
                     /label="mprF CDS"
     gene            841003..843573
                     /gene="mprF"
                     /locus_tag="BSU_08425"
                     /old_locus_tag="BSU08425"
                     /label="mprF gene"
     downshifts      843544
                     /Source="Nicolas_upshifts"
                     /id="D419"
                     /incds=0
                     /nref=121
                     /ntot=252
                     /MaxReadThrough="1.79352"
                     /MaxDrop="5.78159"
                     /score="49.2396824"
                     /energy="-16.1"
                     /TU="NA"
                     /idTUdmin="U641"
                     /TUdmin=0
                     /isTUend="TRUE"
                     /label="downshifts"
     CDS             complement(843591..844568)
                     /gene="sxzY"
                     /locus_tag="BSU_08440"
                     /old_locus_tag="BSU08440"
                     /function="16.1: Circulate"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 1c: Function from experimental evidences
                     in the studied genus; PubMedId: 12354229, 19254027,
                     24606332; Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="xenosiderophore schizokinen (dihydroxamate)
                     transporter binding lipoprotein"
                     /protein_id="NP_388725.1"
                     /db_xref="EnsemblGenomes-Gn:BSU08440"
                     /db_xref="EnsemblGenomes-Tr:CAB12673"
                     /db_xref="GOA:O31567"
                     /db_xref="InterPro:IPR002491"
                     /db_xref="SubtiList:BG12901"
                     /db_xref="UniProtKB/Swiss-Prot:O31567"
                     /translation="MKKHISMLFVFLMAVMVLSACNSSESSSNSEVSSSKTRTVKHAM
                     GTSDNIPANPKRIVVLTNEGTEALLALGIKPVGAVKSWKGDPWYDYLKDDMKGVKNVG
                     LETEPNVEAIAELKPDLIIGNKVRQEKIYDQLNAIAPTVFAESLAGNWKDNLTLYANA
                     VNKADKGKEVIADFDKRVSDLKNKLGDQTNKTVSVVRFLSGESRIYYTDSFPGIILDQ
                     LGFKRPEKQVELFKKQKDQFTFSTDSKESIPDMDADVLFYFTYKADNAKENEKWANQW
                     TSSSLWKNLKAVKSGNAHEVDDVVWTTAGGIKAANYLLDDIETYFLKTK*"
                     /label="sxzY CDS"
     gene            complement(843591..844568)
                     /gene="sxzY"
                     /locus_tag="BSU_08440"
                     /old_locus_tag="BSU08440"
                     /label="sxzY gene"
     downshifts      complement(843602)
                     /Source="Nicolas_upshifts"
                     /id="D420"
                     /incds=0
                     /nref=165
                     /ntot=248
                     /MaxReadThrough="1.28876"
                     /MaxDrop="7.70135"
                     /score="35.2605181"
                     /energy="-16.1"
                     /TU="NA"
                     /idTUdmin="U643"
                     /TUdmin="-4"
                     /isTUend="TRUE"
                     /label="downshifts"
     promotor_-35    844583..844590
                     /Source="Nicolas_upshift_promotors"
                     /id="U642"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.458541458541459"
                     /psig="0.998001998001998"
                     /xcortree=2100
                     /SigmaFactorBS="gcatgctgatatgctttttcatctttttcctcccaaTATTGA
                     AAttcattatcatttaGATCATAATAAGCAGTGTTAagagtgtcaatccctaattgag
                     g"
                     /listShort="S287, yfiZ, yfhA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    complement(844595..844614)
                     /Source="Nicolas_upshift_promotors"
                     /id="U643"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.96003996003996"
                     /psig=1
                     /xcortree=2109
                     /SigmaFactorBS="tgtaatgtttgtttttgagaataatcctcaattaggGATTGA
                     CActcttaacactgctTATTATGATCTAAATGATAAtgaatttcaatattgggaggaa
                     a"
                     /listShort="yfiY"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     promotor_-10    844605..844624
                     /Source="Nicolas_upshift_promotors"
                     /id="U642"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.458541458541459"
                     /psig="0.998001998001998"
                     /xcortree=2100
                     /SigmaFactorBS="gcatgctgatatgctttttcatctttttcctcccaaTATTGA
                     AAttcattatcatttaGATCATAATAAGCAGTGTTAagagtgtcaatccctaattgag
                     g"
                     /listShort="S287, yfiZ, yfhA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     S_feature       844607..844698
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_920382_920473"
                     /HighExp="dia0, Lbexp, LBGexp, H2O2, G150, GM 10, Oxctl,
                     dia15, Paraq, GM 5"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.998"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S287"
     upshifts        844607
                     /Source="Nicolas_upshifts"
                     /id="U642"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.458541458541459"
                     /psig="0.998001998001998"
                     /xcortree=2100
                     /SigmaFactorBS="gcatgctgatatgctttttcatctttttcctcccaaTATTGA
                     AAttcattatcatttaGATCATAATAAGCAGTGTTAagagtgtcaatccctaattgag
                     g"
                     /listShort="S287, yfiZ, yfhA"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     upshifts        complement(844612)
                     /Source="Nicolas_upshifts"
                     /id="U643"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.96003996003996"
                     /psig=1
                     /xcortree=2109
                     /SigmaFactorBS="tgtaatgtttgtttttgagaataatcctcaattaggGATTGA
                     CActcttaacactgctTATTATGATCTAAATGATAAtgaatttcaatattgggaggaa
                     a"
                     /listShort="yfiY"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(844629..844636)
                     /Source="Nicolas_upshift_promotors"
                     /id="U643"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.96003996003996"
                     /psig=1
                     /xcortree=2109
                     /SigmaFactorBS="tgtaatgtttgtttttgagaataatcctcaattaggGATTGA
                     CActcttaacactgctTATTATGATCTAAATGATAAtgaatttcaatattgggaggaa
                     a"
                     /listShort="yfiY"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             844699..845700
                     /gene="sxzZ"
                     /locus_tag="BSU_08450"
                     /old_locus_tag="BSU08450"
                     /function="16.1: Circulate"
                     /experiment="publication(s) with functional evidences,
                     PMID:12354229, 15849754, 16672620, 16850406, 19254027"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 12354229, 15849754,
                     16672620, 16850406, 19254027; Product type t :
                     transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="xenosiderophore schizokinen (dihydroxamate)
                     transporter (permease)"
                     /protein_id="NP_388726.1"
                     /db_xref="EnsemblGenomes-Gn:BSU08450"
                     /db_xref="EnsemblGenomes-Tr:CAB12674"
                     /db_xref="GOA:O31568"
                     /db_xref="InterPro:IPR000522"
                     /db_xref="InterPro:IPR035568"
                     /db_xref="SubtiList:BG12902"
                     /db_xref="UniProtKB/Swiss-Prot:O31568"
                     /translation="MICKKASSKWIVLVCLIFILLTAVCASVVYGYTGTSWRQVYQAF
                     TSFNGTNEHVIIKDVRLPRALVATVVGASLAAAGALMQALTKNPLASPGIFGINAGAG
                     FFIVAGSFFLHIQSPQALVWSSFLGAAFTAAIVYAAGSLGREGLTPIKLTLAGAAMAA
                     MFSSLTQGLLSVNELELAQVLFWLTGSVQGRSLDLLMTMFPYAAAALVICFFLGQKIN
                     LLVMGEDVAKGLGQKTGLLKFVMALCVVMLAGSAVAIAGPISFIGIIIPHFARFVVGN
                     DYRWVLPFSAVLGAILLVCADIGARYIIMPQEVPVGVMTAIIGMPVFVYIARRGAKL*
                     "
                     /label="sxzZ CDS"
     gene            844699..845700
                     /gene="sxzZ"
                     /locus_tag="BSU_08450"
                     /old_locus_tag="BSU08450"
                     /label="sxzZ gene"
     CDS             845697..846728
                     /gene="sxzA"
                     /locus_tag="BSU_08460"
                     /old_locus_tag="BSU08460"
                     /function="16.1: Circulate"
                     /experiment="publication(s) with functional evidences,
                     PMID:12354229, 15849754, 16672620, 16850406, 19254027"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 12354229, 15849754,
                     16672620, 16850406, 19254027; Product type t :
                     transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="xenosiderophore schizokinen (dihydroxamate)
                     transporter (permease)"
                     /protein_id="NP_388727.1"
                     /db_xref="EnsemblGenomes-Gn:BSU08460"
                     /db_xref="EnsemblGenomes-Tr:CAB12675"
                     /db_xref="GOA:O31569"
                     /db_xref="InterPro:IPR000522"
                     /db_xref="InterPro:IPR035568"
                     /db_xref="SubtiList:BG12876"
                     /db_xref="UniProtKB/Swiss-Prot:O31569"
                     /translation="MKLRFGVTAAEKKAWIVFLVLLGLTAAVLIISAGLGQRFIPPWD
                     VAKTFFGAGSKLDELMIMSFRMPRILTALCAGVCLAAAGAILQGLVRNPLASPDIIGI
                     TGGAAVAVVLLMMFFSDRSSSLTISLSWLPAAAFIGASAVGLIVYLLAYKNGASTFRL
                     VLIGIGFSMSAQAMTTLLMIKGPIYRASQANVYITGSVYGSNWQHVKIAIILSVILLF
                     ICFVALKNMNIQVLGEDIAAGAGSAVQRNRFFLLLLSTALTGCAVSVAGTIGFVGLMA
                     PHIARRLVGSSYGALLPASALIGALLVLTADIVGRTLFAPVEVPAGVFTAAIGAPYFI
                     YLLYKTRNS*"
                     /label="sxzA CDS"
     gene            845697..846728
                     /gene="sxzA"
                     /locus_tag="BSU_08460"
                     /old_locus_tag="BSU08460"
                     /label="sxzA gene"
     downshifts      846709
                     /Source="Nicolas_upshifts"
                     /id="D421"
                     /incds=0
                     /nref=24
                     /ntot=154
                     /MaxReadThrough="3.26686"
                     /MaxDrop="4.27732"
                     /score="19.6751667"
                     /energy="-12.8"
                     /TU="NA"
                     /idTUdmin="U642"
                     /TUdmin="-3"
                     /isTUend="TRUE"
                     /label="downshifts"
     promotor_-35    846779..846781
                     /Source="Nicolas_upshift_promotors"
                     /id="U644"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.945054945054945"
                     /psig="0.999000999001"
                     /xcortree=2943
                     /SigmaFactorBS="attttcttaaaaaagaaaatgggtttttttgataatgacTGA
                     agattcgtaattattTTTGCTATACTGACAGAGACattgataaagaaagggcggcaga
                     t"
                     /listShort="yfhB, yfhC"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    846797..846816
                     /Source="Nicolas_upshift_promotors"
                     /id="U644"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.945054945054945"
                     /psig="0.999000999001"
                     /xcortree=2943
                     /SigmaFactorBS="attttcttaaaaaagaaaatgggtttttttgataatgacTGA
                     agattcgtaattattTTTGCTATACTGACAGAGACattgataaagaaagggcggcaga
                     t"
                     /listShort="yfhB, yfhC"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        846800
                     /Source="Nicolas_upshifts"
                     /id="U644"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.945054945054945"
                     /psig="0.999000999001"
                     /xcortree=2943
                     /SigmaFactorBS="attttcttaaaaaagaaaatgggtttttttgataatgacTGA
                     agattcgtaattattTTTGCTATACTGACAGAGACattgataaagaaagggcggcaga
                     t"
                     /listShort="yfhB, yfhC"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             846843..847724
                     /gene="yfhB"
                     /locus_tag="BSU_08470"
                     /old_locus_tag="BSU08470"
                     /EC_number="5.1.-.-"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative isomerase"
                     /protein_id="NP_388728.1"
                     /db_xref="EnsemblGenomes-Gn:BSU08470"
                     /db_xref="EnsemblGenomes-Tr:CAB12676"
                     /db_xref="GOA:O31570"
                     /db_xref="InterPro:IPR003719"
                     /db_xref="SubtiList:BG12877"
                     /db_xref="UniProtKB/Swiss-Prot:O31570"
                     /translation="MKEAEVLKYEAFTSSPGKGNPAGVVLQGDDYTEDEMQIIAERAG
                     YSETSFIRKSESADLELRYFTPGHEMNLCGHATVASLYALCEKGMLESGKTYSIQTKA
                     GILPVKISEKDGRIHITLEQASPQFKPFTGDRKKLADALGITDEDFHEDLPIVFGSTG
                     IWTAIVPLKSLEASKKMVPDNKQFPEVLVDLPKASVHPFTFETVHPDSDLHGRHFSSP
                     YSGTIEDPVTGTASGVMGAYMKHYGNAEQHKFIIEQGQEIGKDGKVEIEMNEAGGHVK
                     VNMTGTAVYSETRILKI*"
                     /label="yfhB CDS"
     gene            846843..847724
                     /gene="yfhB"
                     /locus_tag="BSU_08470"
                     /old_locus_tag="BSU08470"
                     /label="yfhB gene"
     promotor_-35    847735..847742
                     /Source="Nicolas_upshift_promotors"
                     /id="U645"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.719280719280719"
                     /psig="0.998001998001998"
                     /xcortree=2110
                     /SigmaFactorBS="cgtattcttaaaatctaatacggatgatGGTTTACAaaaaga
                     tgcactttcCGTTATCATTATGAAATGATaatcattttcaattgcataggaaggtgag
                     a"
                     /listShort="yfhC"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    847758..847777
                     /Source="Nicolas_upshift_promotors"
                     /id="U645"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.719280719280719"
                     /psig="0.998001998001998"
                     /xcortree=2110
                     /SigmaFactorBS="cgtattcttaaaatctaatacggatgatGGTTTACAaaaaga
                     tgcactttcCGTTATCATTATGAAATGATaatcattttcaattgcataggaaggtgag
                     a"
                     /listShort="yfhC"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        847767
                     /Source="Nicolas_upshifts"
                     /id="U645"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.719280719280719"
                     /psig="0.998001998001998"
                     /xcortree=2110
                     /SigmaFactorBS="cgtattcttaaaatctaatacggatgatGGTTTACAaaaaga
                     tgcactttcCGTTATCATTATGAAATGATaatcattttcaattgcataggaaggtgag
                     a"
                     /listShort="yfhC"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             847812..848396
                     /gene="yfhC"
                     /locus_tag="BSU_08480"
                     /old_locus_tag="BSU08480"
                     /EC_number="1.6.99.-"
                     /function="16.11: Scavenge (Catabolism)"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 12354229, 22287527;
                     Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative oxidoreductase (nitroreductase family)"
                     /protein_id="NP_388729.1"
                     /db_xref="EnsemblGenomes-Gn:BSU08480"
                     /db_xref="EnsemblGenomes-Tr:CAB12677"
                     /db_xref="GOA:O31571"
                     /db_xref="InterPro:IPR000415"
                     /db_xref="InterPro:IPR026021"
                     /db_xref="InterPro:IPR029479"
                     /db_xref="SubtiList:BG12878"
                     /db_xref="UniProtKB/Swiss-Prot:O31571"
                     /translation="MPQTEQIHQHSVLRDIIRSRRSIRKFKQEPVPSAVILDMLETAK
                     YAPNHRVTEPWRFIYVSSETGKANLINTFAAFSKKSKPDMTEEKLQNFKNTLGRVPGF
                     LLVVFQEDENERARDDDFAATSSLIQNLQLLAWEKGIGMVWKSGKILYDKEVHQAFGL
                     QDNERFAAIIQTGYPDEAPEVKKRTPIRDRFTEM*"
                     /label="yfhC CDS"
     gene            847812..848396
                     /gene="yfhC"
                     /locus_tag="BSU_08480"
                     /old_locus_tag="BSU08480"
                     /label="yfhC gene"
     downshifts      848383
                     /Source="Nicolas_upshifts"
                     /id="D422"
                     /incds=0
                     /nref=208
                     /ntot=262
                     /MaxReadThrough="3.27483"
                     /MaxDrop="6.40857"
                     /score="21.7703837"
                     /energy="-18.2"
                     /TU="U645"
                     /idTUdmin="U644"
                     /TUdmin="-1"
                     /isTUend="TRUE"
                     /label="downshifts"
     CDS             complement(848435..848626)
                     /gene="yfhD"
                     /locus_tag="BSU_08490"
                     /old_locus_tag="BSU08490"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved hypothetical protein"
                     /protein_id="NP_388730.1"
                     /db_xref="EnsemblGenomes-Gn:BSU08490"
                     /db_xref="EnsemblGenomes-Tr:CAB12678"
                     /db_xref="InterPro:IPR025435"
                     /db_xref="SubtiList:BG12879"
                     /db_xref="UniProtKB/Swiss-Prot:O31572"
                     /translation="MGRNHIHKNRDKNKQKLPQVPDALKRETDGVYEEYSTELADADD
                     REAQERAKAADNRAKKKSR*"
                     /label="yfhD CDS"
     gene            complement(848435..848626)
                     /gene="yfhD"
                     /locus_tag="BSU_08490"
                     /old_locus_tag="BSU08490"
                     /label="yfhD gene"
     downshifts      complement(848453)
                     /Source="Nicolas_upshifts"
                     /id="D423"
                     /incds=0
                     /nref=65
                     /ntot=197
                     /MaxReadThrough="0.436919999999999"
                     /MaxDrop="8.51174"
                     /score="30.1998663"
                     /energy="-18.2"
                     /TU="NA"
                     /idTUdmin="U649"
                     /TUdmin=7
                     /isTUend="TRUE"
                     /label="downshifts"
     upshifts        complement(848658)
                     /Source="Nicolas_upshifts"
                     /id="U646"
                     /multdbtbs="-"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp=1
                     /psig=1
                     /xcortree=840
                     /SigmaFactorBS="cggaaaaagctgctaagcggaagtaGGAATACatagcccctt
                     aaaaCCAAATACTATAtttgtttgatatcactttttagggggaatttgatatgggcag
                     a"
                     /listShort="yfhD"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-10    complement(848661..848672)
                     /Source="Nicolas_upshift_promotors"
                     /id="U646"
                     /multdbtbs="-"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp=1
                     /psig=1
                     /xcortree=840
                     /SigmaFactorBS="cggaaaaagctgctaagcggaagtaGGAATACatagcccctt
                     aaaaCCAAATACTATAtttgtttgatatcactttttagggggaatttgatatgggcag
                     a"
                     /listShort="yfhD"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     promotor_-35    complement(848687..848693)
                     /Source="Nicolas_upshift_promotors"
                     /id="U646"
                     /multdbtbs="-"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp=1
                     /psig=1
                     /xcortree=840
                     /SigmaFactorBS="cggaaaaagctgctaagcggaagtaGGAATACatagcccctt
                     aaaaCCAAATACTATAtttgtttgatatcactttttagggggaatttgatatgggcag
                     a"
                     /listShort="yfhD"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             complement(848693..848803)
                     /gene="yfhE"
                     /locus_tag="BSU_08500"
                     /old_locus_tag="BSU08500"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 5: Unknown function"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="NP_388731.1"
                     /db_xref="EnsemblGenomes-Gn:BSU08500"
                     /db_xref="EnsemblGenomes-Tr:CAB12679"
                     /db_xref="InterPro:IPR025437"
                     /db_xref="SubtiList:BG12880"
                     /db_xref="UniProtKB/Swiss-Prot:O31573"
                     /translation="MEKKREKHQQGANLKKMQEVLYSGEFKKAEKAAKRK*"
                     /label="yfhE CDS"
     gene            complement(848693..848803)
                     /gene="yfhE"
                     /locus_tag="BSU_08500"
                     /old_locus_tag="BSU08500"
                     /label="yfhE gene"
     promotor_-10    complement(848832..848843)
                     /Source="Nicolas_upshift_promotors"
                     /id="U647"
                     /multdbtbs="-"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp=1
                     /psig=1
                     /xcortree=1140
                     /SigmaFactorBS="actctcacagctgatagcggaccgaaagacTGTATAAaaaca
                     gcaggaagcGTCAACCTTAAGaataacatggttgaaggaggtcctttttatggaaaaa
                     a"
                     /listShort="yfhE, yfhD"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(848834)
                     /Source="Nicolas_upshifts"
                     /id="U647"
                     /multdbtbs="-"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp=1
                     /psig=1
                     /xcortree=1140
                     /SigmaFactorBS="actctcacagctgatagcggaccgaaagacTGTATAAaaaca
                     gcaggaagcGTCAACCTTAAGaataacatggttgaaggaggtcctttttatggaaaaa
                     a"
                     /listShort="yfhE, yfhD"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(848858..848864)
                     /Source="Nicolas_upshift_promotors"
                     /id="U647"
                     /multdbtbs="-"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp=1
                     /psig=1
                     /xcortree=1140
                     /SigmaFactorBS="actctcacagctgatagcggaccgaaagacTGTATAAaaaca
                     gcaggaagcGTCAACCTTAAGaataacatggttgaaggaggtcctttttatggaaaaa
                     a"
                     /listShort="yfhE, yfhD"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             complement(848858..849769)
                     /gene="yfhF"
                     /locus_tag="BSU_08510"
                     /old_locus_tag="BSU08510"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative nucleotide-or NAD-binding protein"
                     /protein_id="NP_388732.1"
                     /db_xref="EnsemblGenomes-Gn:BSU08510"
                     /db_xref="EnsemblGenomes-Tr:CAB12680"
                     /db_xref="GOA:O31574"
                     /db_xref="InterPro:IPR001509"
                     /db_xref="InterPro:IPR010099"
                     /db_xref="InterPro:IPR013549"
                     /db_xref="InterPro:IPR036291"
                     /db_xref="SubtiList:BG12881"
                     /db_xref="UniProtKB/Swiss-Prot:O31574"
                     /translation="MNIAMTGGTGFLGQHLTGVLTRQGHHVYILSRNARETEQKNMTY
                     VQWLSEGAAPEQELPHIDVWINLAGKSIFGRWTEKTKQHILSSRINATREVQRLIQKQ
                     KEKPKTLIQASAVGIYGTSLEKTFTEDSATSDEDFLSHTAHLWEKEGQHIEAMGIRTV
                     YARFGVMLGEKGALPLMILPYKFLAGGTIGTGRQWLSWIHVEDAAQMIRYAVENAGIS
                     GPMNVTAPNPVDMKQFGKTIARVKHRPHWLPVPEFFLSKALGEMSLLIVKGQRALPKK
                     AITSGFRFTYSDLEFALSQLIADRKTV*"
                     /label="yfhF CDS"
     gene            complement(848858..849769)
                     /gene="yfhF"
                     /locus_tag="BSU_08510"
                     /old_locus_tag="BSU08510"
                     /label="yfhF gene"
     promotor_-35    849655..849658
                     /Source="Nicolas_upshift_promotors"
                     /id="U648"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.531468531468531"
                     /psig="0.999000999001"
                     /xcortree=2741
                     /SigmaFactorBS="acagccattggacatatgtcatatttttttGTTCagtttccc
                     ttgcgtttCTTGATAAAATATAAACATGgtgtccctggcgggtaagaacgcctgtcag
                     a"
                     /listShort="S288, recX, yfhH"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    849675..849694
                     /Source="Nicolas_upshift_promotors"
                     /id="U648"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.531468531468531"
                     /psig="0.999000999001"
                     /xcortree=2741
                     /SigmaFactorBS="acagccattggacatatgtcatatttttttGTTCagtttccc
                     ttgcgtttCTTGATAAAATATAAACATGgtgtccctggcgggtaagaacgcctgtcag
                     a"
                     /listShort="S288, recX, yfhH"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     S_feature       849685..849857
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_925460_925632"
                     /HighExp="LBGstat, Lbtran, T1.30H, T2.0H, T2.30H, M9-stat,
                     T1.0H, T3.0H, Sw, G180"
                     /AntisenseName="yfhF"
                     /AntisenseCor="-5.3501479327985699E-2"
                     /AntisenseRegPval="-0.4"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.999"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S288"
     upshifts        849685
                     /Source="Nicolas_upshifts"
                     /id="U648"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.531468531468531"
                     /psig="0.999000999001"
                     /xcortree=2741
                     /SigmaFactorBS="acagccattggacatatgtcatatttttttGTTCagtttccc
                     ttgcgtttCTTGATAAAATATAAACATGgtgtccctggcgggtaagaacgcctgtcag
                     a"
                     /listShort="S288, recX, yfhH"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-10    complement(849791..849809)
                     /Source="Nicolas_upshift_promotors"
                     /id="U649"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp="0.988011988011988"
                     /psig="0.988011988011988"
                     /xcortree=135
                     /SigmaFactorBS="aacggcatcttaatctcccttctcaggcctgaaacgCGTTTT
                     CttttattacaatgAGGTAAAGTATATTTATTAgaacgatgaggagagatgttcatga
                     a"
                     /listShort="yfhF, yfhE, yfhD"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(849805)
                     /Source="Nicolas_upshifts"
                     /id="U649"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp="0.988011988011988"
                     /psig="0.988011988011988"
                     /xcortree=135
                     /SigmaFactorBS="aacggcatcttaatctcccttctcaggcctgaaacgCGTTTT
                     CttttattacaatgAGGTAAAGTATATTTATTAgaacgatgaggagagatgttcatga
                     a"
                     /listShort="yfhF, yfhE, yfhD"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(849823..849829)
                     /Source="Nicolas_upshift_promotors"
                     /id="U649"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp="0.988011988011988"
                     /psig="0.988011988011988"
                     /xcortree=135
                     /SigmaFactorBS="aacggcatcttaatctcccttctcaggcctgaaacgCGTTTT
                     CttttattacaatgAGGTAAAGTATATTTATTAgaacgatgaggagagatgttcatga
                     a"
                     /listShort="yfhF, yfhE, yfhD"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             849858..850652
                     /gene="recX"
                     /locus_tag="BSU_08520"
                     /old_locus_tag="BSU08520"
                     /function="16.3: Control"
                     /function="16.9: Replicate"
                     /experiment="publication(s) with functional evidences,
                     PMID:8946165, 10869079, 12547390, 23284295, 24285298"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 8946165, 10869079,
                     12547390, 23284295, 24285298; Product type r: regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="regulatory protein RecX"
                     /protein_id="NP_388733.1"
                     /db_xref="EnsemblGenomes-Gn:BSU08520"
                     /db_xref="EnsemblGenomes-Tr:CAB12681"
                     /db_xref="GOA:O31575"
                     /db_xref="InterPro:IPR003783"
                     /db_xref="InterPro:IPR036388"
                     /db_xref="SubtiList:BG12882"
                     /db_xref="UniProtKB/Swiss-Prot:O31575"
                     /translation="MPFITKISTQKKNTERFNIFLDDKYAFSVDADVLVKFELKKGKE
                     LDDLDIIEIQYGDEVKKGFNRALDFLSYRMRSTKEVEDHLKKKETSPPVIAEVIHRLN
                     DYKYLNDQEFAAAYVSTHKKTNGKGPDVLFRELRAKGIDDDTIKEALSSFSFEDQTRE
                     AVKHVEKLLKKDKKLSTKELKQRAQLQLQRKGFSFDVISAAMDQIEYENDEDTEKEAL
                     RLHAEKAFRKYRYDGSYESAMKVKQFLFRKGFSLDLIEQLLQEEEY*"
                     /label="recX CDS"
     gene            849858..850652
                     /gene="recX"
                     /locus_tag="BSU_08520"
                     /old_locus_tag="BSU08520"
                     /label="recX gene"
     CDS             850654..850968
                     /gene="yfhH"
                     /locus_tag="BSU_08530"
                     /old_locus_tag="BSU08530"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms; PubMedId: 22720735"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved hypothetical protein"
                     /protein_id="NP_388734.1"
                     /db_xref="EnsemblGenomes-Gn:BSU08530"
                     /db_xref="EnsemblGenomes-Tr:CAB12682"
                     /db_xref="InterPro:IPR014938"
                     /db_xref="InterPro:IPR036289"
                     /db_xref="PDB:1SF9"
                     /db_xref="SubtiList:BG12883"
                     /db_xref="UniProtKB/Swiss-Prot:O31576"
                     /translation="MEKRYSQMTPHELNTEIALLSEKARKAEQHGIINELAVLERKIT
                     MAKAYLLNPEDYSPGETYRVENTEDEFTISYLNGVFAWGYRTSSPQQEEALPISVLQE
                     KE*"
                     /label="yfhH CDS"
     gene            850654..850968
                     /gene="yfhH"
                     /locus_tag="BSU_08530"
                     /old_locus_tag="BSU08530"
                     /label="yfhH gene"
     S_feature       complement(850876..851144)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_926651_926919_c"
                     /HighExp="S8, S6, S5, S7, C30, S4, nit, ferm, BT, G135"
                     /AntisenseName="yfhH"
                     /AntisenseCor="-0.53569713251514905"
                     /AntisenseRegPval="-20.7"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="NA"
                     /TUshortPSig="NA"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S289"
     downshifts      850958
                     /Source="Nicolas_upshifts"
                     /id="D424"
                     /incds=0
                     /nref=71
                     /ntot=206
                     /MaxReadThrough="2.93348"
                     /MaxDrop="5.2859"
                     /score="24.7235138"
                     /energy="-11.6"
                     /TU="NA"
                     /idTUdmin="U648"
                     /TUdmin=0
                     /isTUend="TRUE"
                     /label="downshifts"
     promotor_-35    851042..851047
                     /Source="Nicolas_upshift_promotors"
                     /id="U650"
                     /multdbtbs="-"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp="0.460539460539461"
                     /psig=1
                     /xcortree=2471
                     /SigmaFactorBS="cagcacatttacacgaattcttaaagaaaaaatcATTGAAtt
                     cacttgaaaaatcTTTTAAGATGAAACTCGTTGttttttaaaatcaaaggaggcgatg
                     a"
                     /listShort="yfhI, S290, S291, yfhJ"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    851063..851082
                     /Source="Nicolas_upshift_promotors"
                     /id="U650"
                     /multdbtbs="-"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp="0.460539460539461"
                     /psig=1
                     /xcortree=2471
                     /SigmaFactorBS="cagcacatttacacgaattcttaaagaaaaaatcATTGAAtt
                     cacttgaaaaatcTTTTAAGATGAAACTCGTTGttttttaaaatcaaaggaggcgatg
                     a"
                     /listShort="yfhI, S290, S291, yfhJ"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        851068
                     /Source="Nicolas_upshifts"
                     /id="U650"
                     /multdbtbs="-"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp="0.460539460539461"
                     /psig=1
                     /xcortree=2471
                     /SigmaFactorBS="cagcacatttacacgaattcttaaagaaaaaatcATTGAAtt
                     cacttgaaaaatcTTTTAAGATGAAACTCGTTGttttttaaaatcaaaggaggcgatg
                     a"
                     /listShort="yfhI, S290, S291, yfhJ"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             851111..852304
                     /gene="yfhI"
                     /locus_tag="BSU_08540"
                     /old_locus_tag="BSU08540"
                     /function="16.1: Circulate"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 15849754, 16850406,
                     22226636; Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="putative efflux transporter"
                     /protein_id="NP_388735.1"
                     /db_xref="EnsemblGenomes-Gn:BSU08540"
                     /db_xref="EnsemblGenomes-Tr:CAB12683"
                     /db_xref="GOA:O31577"
                     /db_xref="InterPro:IPR011701"
                     /db_xref="InterPro:IPR020846"
                     /db_xref="InterPro:IPR036259"
                     /db_xref="SubtiList:BG12884"
                     /db_xref="UniProtKB/Swiss-Prot:O31577"
                     /translation="MSIKNPSVKFIIFVLMICTFSIGYTEYAVMGILTSIANDFHIQV
                     SSAGLLVTAYAASVCLTGPLVTIISVKLPRKPVLLGLMAIFILSNLMSALAPNFAVLA
                     ISRILSASIHGAFFAIAMVFASEMVPPEKRAAAAASMNGGLTVALMLGVPFGSYLGDV
                     LNWRAVFSIITALGVIGFLGLMAAVPNRKPKVIPMLMNEWGVFKHKQVLFSFAITILG
                     YSGVFIAYTFIEPILRHSAGFSTVGITGALFAYGLGGVAGNFFAGKVPLPLLTRTMIG
                     VMIGLIGVLAVFPYIAIYPAAAIVATFLFGACAFGTPPLLQTKVISSSEGGTTIAAAV
                     SVSAFNLANALGAWIGGMILNGTGSYSWLFAGGALMTACGLVLSTFAHLSEKKSVYEY
                     QVNKG*"
                     /label="yfhI CDS"
     gene            851111..852304
                     /gene="yfhI"
                     /locus_tag="BSU_08540"
                     /old_locus_tag="BSU08540"
                     /label="yfhI gene"
     S_feature       852305..852539
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_928080_928314"
                     /HighExp="G180, Paraq, C30, Oxctl, H2O2, G135, G150, S8,
                     Heat, LBGstat"
                     /AntisenseName="sspK"
                     /AntisenseCor="1.9886505145521101E-2"
                     /AntisenseRegPval="-0.1"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig=1
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S290"
     CDS             complement(852337..852489)
                     /gene="sspK"
                     /locus_tag="BSU_08550"
                     /old_locus_tag="BSU08550"
                     /function="16.5: Explore"
                     /function="16.8: Protect"
                     /experiment="publication(s) with functional evidences,
                     PMID:10806362"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 10806362; Product type
                     cp: cell process"
                     /codon_start=1
                     /transl_table=11
                     /product="small acid-soluble spore protein"
                     /protein_id="YP_054573.1"
                     /db_xref="EnsemblGenomes-Gn:BSU08550"
                     /db_xref="EnsemblGenomes-Tr:CAE01449"
                     /db_xref="GOA:Q7WY75"
                     /db_xref="InterPro:IPR012611"
                     /db_xref="SubtiList:BG14175"
                     /db_xref="UniProtKB/Swiss-Prot:Q7WY75"
                     /translation="MVRNKEKGFPYENENKFQGEPRAKDDYASKRADGSINQHPQERM
                     RASGKR*"
                     /label="sspK CDS"
     gene            complement(852337..852489)
                     /gene="sspK"
                     /locus_tag="BSU_08550"
                     /old_locus_tag="BSU08550"
                     /label="sspK gene"
     downshifts      complement(852354)
                     /Source="Nicolas_upshifts"
                     /id="D425"
                     /incds=0
                     /nref=24
                     /ntot=45
                     /MaxReadThrough="2.36419"
                     /MaxDrop="4.9889"
                     /score="20.2715496"
                     /energy="-12.3"
                     /TU="NA"
                     /idTUdmin="U652"
                     /TUdmin=0
                     /isTUend="TRUE"
                     /label="downshifts"
     promotor_-35    852518..852525
                     /Source="Nicolas_upshift_promotors"
                     /id="U651"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.924075924075924"
                     /psig="0.995004995004995"
                     /xcortree=2031
                     /SigmaFactorBS="tcggaccatgtcatatccccctaggttcgagatcaaaAAGTT
                     GCGtcttttcagatgaAGACGTAAGGTTAGTATATGgagaacaccacgtaataaagcg
                     t"
                     /listShort="S291, yfhJ"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    852539..852558
                     /Source="Nicolas_upshift_promotors"
                     /id="U651"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.924075924075924"
                     /psig="0.995004995004995"
                     /xcortree=2031
                     /SigmaFactorBS="tcggaccatgtcatatccccctaggttcgagatcaaaAAGTT
                     GCGtcttttcagatgaAGACGTAAGGTTAGTATATGgagaacaccacgtaataaagcg
                     t"
                     /listShort="S291, yfhJ"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     S_feature       852541..852613
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_928316_928388"
                     /HighExp="dia5, LPhT, Diami, dia15, Etha, T0.30H, H2O2,
                     LBGstat, BC, Salt"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA, SigA"
                     /TUshortPSig="0.995, 1"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S291"
     upshifts        852541
                     /Source="Nicolas_upshifts"
                     /id="U651"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.924075924075924"
                     /psig="0.995004995004995"
                     /xcortree=2031
                     /SigmaFactorBS="tcggaccatgtcatatccccctaggttcgagatcaaaAAGTT
                     GCGtcttttcagatgaAGACGTAAGGTTAGTATATGgagaacaccacgtaataaagcg
                     t"
                     /listShort="S291, yfhJ"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-10    complement(852548..852559)
                     /Source="Nicolas_upshift_promotors"
                     /id="U652"
                     /multdbtbs="SigG"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp="0.997002997002997"
                     /psig="0.997002997002997"
                     /xcortree=867
                     /SigmaFactorBS="ttcatgtgtgcagtctcctttcttcaggaaaaaaataaCGCT
                     TTAttacgtggtgttctCCATATACTAACcttacgtcttcatctgaaaagacgcaact
                     t"
                     /listShort="sspK"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(852558)
                     /Source="Nicolas_upshifts"
                     /id="U652"
                     /multdbtbs="SigG"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp="0.997002997002997"
                     /psig="0.997002997002997"
                     /xcortree=867
                     /SigmaFactorBS="ttcatgtgtgcagtctcctttcttcaggaaaaaaataaCGCT
                     TTAttacgtggtgttctCCATATACTAACcttacgtcttcatctgaaaagacgcaact
                     t"
                     /listShort="sspK"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(852574..852580)
                     /Source="Nicolas_upshift_promotors"
                     /id="U652"
                     /multdbtbs="SigG"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp="0.997002997002997"
                     /psig="0.997002997002997"
                     /xcortree=867
                     /SigmaFactorBS="ttcatgtgtgcagtctcctttcttcaggaaaaaaataaCGCT
                     TTAttacgtggtgttctCCATATACTAACcttacgtcttcatctgaaaagacgcaact
                     t"
                     /listShort="sspK"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             852614..852883
                     /gene="yfhJ"
                     /locus_tag="BSU_08560"
                     /old_locus_tag="BSU08560"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved hypothetical protein"
                     /protein_id="NP_388736.1"
                     /db_xref="EnsemblGenomes-Gn:BSU08560"
                     /db_xref="EnsemblGenomes-Tr:CAB12684"
                     /db_xref="InterPro:IPR026952"
                     /db_xref="SubtiList:BG12885"
                     /db_xref="UniProtKB/Swiss-Prot:O31578"
                     /translation="MNMYIEKLTNLLLEKNEMISYIQAKTWVELLWSDFEATYAKAGH
                     AYQGEKMTEKIVTQWIENYGGQLHLFQSSRNDVNDYLNQSRGLLH*"
                     /label="yfhJ CDS"
     gene            852614..852883
                     /gene="yfhJ"
                     /locus_tag="BSU_08560"
                     /old_locus_tag="BSU08560"
                     /label="yfhJ gene"
     downshifts      852872
                     /Source="Nicolas_upshifts"
                     /id="D426"
                     /incds=0
                     /nref=62
                     /ntot=233
                     /MaxReadThrough="2.9538"
                     /MaxDrop="5.3621"
                     /score="19.3423239"
                     /energy="-10.6"
                     /TU="NA"
                     /idTUdmin="U650"
                     /TUdmin=0
                     /isTUend="TRUE"
                     /label="downshifts"
     promotor_-35    852961..852967
                     /Source="Nicolas_upshift_promotors"
                     /id="U653"
                     /multdbtbs="SigB"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp=1
                     /psig=1
                     /xcortree=223
                     /SigmaFactorBS="ttaaaattaccttaacaggaagaaatcataaacaaaacaTGT
                     TTCAccagcctgtcaatcaGGGAATACCACTTATATCTtgtcaaaatgcgaggaggag
                     c"
                     /listShort="yfhK, S292, yfhL, yfhM, S293, S294, csbB,
                     S295, yfhO"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     upshifts        852982
                     /Source="Nicolas_upshifts"
                     /id="U653"
                     /multdbtbs="SigB"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp=1
                     /psig=1
                     /xcortree=223
                     /SigmaFactorBS="ttaaaattaccttaacaggaagaaatcataaacaaaacaTGT
                     TTCAccagcctgtcaatcaGGGAATACCACTTATATCTtgtcaaaatgcgaggaggag
                     c"
                     /listShort="yfhK, S292, yfhL, yfhM, S293, S294, csbB,
                     S295, yfhO"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-10    852983..853001
                     /Source="Nicolas_upshift_promotors"
                     /id="U653"
                     /multdbtbs="SigB"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp=1
                     /psig=1
                     /xcortree=223
                     /SigmaFactorBS="ttaaaattaccttaacaggaagaaatcataaacaaaacaTGT
                     TTCAccagcctgtcaatcaGGGAATACCACTTATATCTtgtcaaaatgcgaggaggag
                     c"
                     /listShort="yfhK, S292, yfhL, yfhM, S293, S294, csbB,
                     S295, yfhO"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     CDS             853028..853546
                     /gene="yfhK"
                     /locus_tag="BSU_08570"
                     /old_locus_tag="BSU08570"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; Product type m: membrane
                     component"
                     /codon_start=1
                     /transl_table=11
                     /product="putative exported protein"
                     /protein_id="NP_388737.1"
                     /db_xref="EnsemblGenomes-Gn:BSU08570"
                     /db_xref="EnsemblGenomes-Tr:CAB12685"
                     /db_xref="InterPro:IPR003646"
                     /db_xref="SubtiList:BG12886"
                     /db_xref="UniProtKB/Swiss-Prot:O31579"
                     /translation="MKKKQVMLALTAAAGLGLTALHSAPAAKAAPLHDISVSMPSSDT
                     YIIKAGKLNVRTEPNHEGDILGTVSSEQKVKVDRFVNADWAQIHFKGKKAYISTHFLM
                     KTASQAKTTKQTAFYTPTPENGKAKQLSSGTEVTILGWGFSENGGFDFTWAFVDYGGV
                     KGYIHTKDLQMR*"
                     /label="yfhK CDS"
     gene            853028..853546
                     /gene="yfhK"
                     /locus_tag="BSU_08570"
                     /old_locus_tag="BSU08570"
                     /label="yfhK gene"
     S_feature       853547..853614
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_929322_929389"
                     /HighExp="Etha, Sw, Salt, M9-stat, B60, B36, Gly, LoTm,
                     BC, LPhT"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigB"
                     /TUshortPSig=1
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S292"
     promotor_-35    853582..853591
                     /Source="Nicolas_upshift_promotors"
                     /id="U654"
                     /multdbtbs="SigW"
                     /comp="M9"
                     /sig="SigWXY"
                     /pcomp=1
                     /psig=1
                     /xcortree=1692
                     /SigmaFactorBS="ccgaggcttgtctttttgcctatgcaTGAAACATTTcttctt
                     tctgcACGTAACAATGAGAAAggagatgatgatatgacgggtttagtcggcggagggc
                     t"
                     /listShort="yfhL, yfhM"
                     /listLong="S293, S294, csbB, S295, yfhO"
                     /label="promotor_-35"
     promotor_-10    853603..853618
                     /Source="Nicolas_upshift_promotors"
                     /id="U654"
                     /multdbtbs="SigW"
                     /comp="M9"
                     /sig="SigWXY"
                     /pcomp=1
                     /psig=1
                     /xcortree=1692
                     /SigmaFactorBS="ccgaggcttgtctttttgcctatgcaTGAAACATTTcttctt
                     tctgcACGTAACAATGAGAAAggagatgatgatatgacgggtttagtcggcggagggc
                     t"
                     /listShort="yfhL, yfhM"
                     /listLong="S293, S294, csbB, S295, yfhO"
                     /label="promotor_-10"
     upshifts        853616
                     /Source="Nicolas_upshifts"
                     /id="U654"
                     /multdbtbs="SigW"
                     /comp="M9"
                     /sig="SigWXY"
                     /pcomp=1
                     /psig=1
                     /xcortree=1692
                     /SigmaFactorBS="ccgaggcttgtctttttgcctatgcaTGAAACATTTcttctt
                     tctgcACGTAACAATGAGAAAggagatgatgatatgacgggtttagtcggcggagggc
                     t"
                     /listShort="yfhL, yfhM"
                     /listLong="S293, S294, csbB, S295, yfhO"
                     /label="upshifts"
     CDS             853631..853963
                     /gene="spdL"
                     /locus_tag="BSU_08580"
                     /old_locus_tag="BSU08580"
                     /function="16.8: Protect"
                     /experiment="publication(s) with functional evidences,
                     PMID:16629676, 22720735"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 16629676, 22720735;
                     Product type f: factor"
                     /codon_start=1
                     /transl_table=11
                     /product="factor for peptide SdpC immunity"
                     /protein_id="NP_388738.1"
                     /db_xref="EnsemblGenomes-Gn:BSU08580"
                     /db_xref="EnsemblGenomes-Tr:CAB12686"
                     /db_xref="GOA:O31580"
                     /db_xref="InterPro:IPR025962"
                     /db_xref="SubtiList:BG12887"
                     /db_xref="UniProtKB/Swiss-Prot:O31580"
                     /translation="MTGLVGGGLMIIAGILIKLFPPKSINSVYGYRTRRSMSDQRLWN
                     EANRYSASLMILSGLVIAGMGLLLGSNLFILQLILLIAACVITFMLTEKRLKIMTHSQ
                     GGDRSGRS*"
                     /label="spdL CDS"
     gene            853631..853963
                     /gene="spdL"
                     /locus_tag="BSU_08580"
                     /old_locus_tag="BSU08580"
                     /label="spdL gene"
     CDS             853950..854810
                     /gene="ephM"
                     /locus_tag="BSU_08590"
                     /old_locus_tag="BSU08590"
                     /EC_number="3.3.2.10"
                     /function="16.11: Scavenge (Catabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:16597997, 20941576"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 16597997, 20941576;
                     Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="stress induced epoxide hydrolase"
                     /protein_id="NP_388739.1"
                     /db_xref="EnsemblGenomes-Gn:BSU08590"
                     /db_xref="EnsemblGenomes-Tr:CAB12687"
                     /db_xref="GOA:O31581"
                     /db_xref="InterPro:IPR000073"
                     /db_xref="InterPro:IPR000639"
                     /db_xref="InterPro:IPR029058"
                     /db_xref="SubtiList:BG12888"
                     /db_xref="UniProtKB/Swiss-Prot:O31581"
                     /translation="MDGVKCQFVNTNGITLHVAAAGREDGPLIVLLHGFPEFWYGWKN
                     QIKPLVDAGYRVIAPDQRGYNLSDKPEGIDSYRIDTLRDDIIGLITQFTDEKAIVIGH
                     DWGGAVAWHLASTRPEYLEKLIAINIPHPHVMKTVTPLYPPQWLKSSYIAYFQLPDIP
                     EASLRENDYDTLDKAIGLSDRPALFTSEDVSRYKEAWKQPGALTAMLNWYRALRKGSL
                     AEKPSYETVPYRMIWGMEDRFLSRKLAKETERHCPNGHLIFVDEASHWINHEKPAIVN
                     QLILEYLKNQ*"
                     /label="ephM CDS"
     gene            853950..854810
                     /gene="ephM"
                     /locus_tag="BSU_08590"
                     /old_locus_tag="BSU08590"
                     /label="ephM gene"
     downshifts      854808
                     /Source="Nicolas_upshifts"
                     /id="D427"
                     /incds=0
                     /nref=27
                     /ntot=191
                     /MaxReadThrough="5.0793"
                     /MaxDrop="4.1326"
                     /score="3.7712168"
                     /energy="-8.4"
                     /TU="U653,U654"
                     /idTUdmin="U654"
                     /TUdmin="-132"
                     /isTUend="FALSE"
                     /label="downshifts"
     promotor_-35    854868..854874
                     /Source="Nicolas_upshift_promotors"
                     /id="U655"
                     /multdbtbs="-"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp="0.99000999000999"
                     /psig="0.99000999000999"
                     /xcortree=945
                     /SigmaFactorBS="tcataatggcagactttttctgtgcgttttttTTCATAGtct
                     gttttaaacaTGACAAAATAACattaaaaatcatgaatgtcaccataaaattgtaaca
                     a"
                     /listShort="S293, S294, csbB"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    854888..854899
                     /Source="Nicolas_upshift_promotors"
                     /id="U655"
                     /multdbtbs="-"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp="0.99000999000999"
                     /psig="0.99000999000999"
                     /xcortree=945
                     /SigmaFactorBS="tcataatggcagactttttctgtgcgttttttTTCATAGtct
                     gttttaaacaTGACAAAATAACattaaaaatcatgaatgtcaccataaaattgtaaca
                     a"
                     /listShort="S293, S294, csbB"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     S_feature       854896..854960
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_930671_930735"
                     /HighExp="Etha, S5, M9-stat, T0.30H, Sw, T-0.40H, B60, S8,
                     B36, T1.0H"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigGF, SigB"
                     /TUshortPSig="0.99, 1"
                     /TUlongSig="SigWXY"
                     /TUlongPSig=1
                     /label="S293"
     upshifts        854896
                     /Source="Nicolas_upshifts"
                     /id="U655"
                     /multdbtbs="-"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp="0.99000999000999"
                     /psig="0.99000999000999"
                     /xcortree=945
                     /SigmaFactorBS="tcataatggcagactttttctgtgcgttttttTTCATAGtct
                     gttttaaacaTGACAAAATAACattaaaaatcatgaatgtcaccataaaattgtaaca
                     a"
                     /listShort="S293, S294, csbB"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-10    complement(854918..854937)
                     /Source="Nicolas_upshift_promotors"
                     /id="U656"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.446553446553447"
                     /psig="0.97902097902098"
                     /xcortree=2407
                     /SigmaFactorBS="caaatcttcagtaaggctattcctttttttaaagtCGtttaa
                     acctgtttTTTGTTACAATTTTATGGTGacattcatgatttttaatgttattttgtca
                     t"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(854927)
                     /Source="Nicolas_upshifts"
                     /id="U656"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.446553446553447"
                     /psig="0.97902097902098"
                     /xcortree=2407
                     /SigmaFactorBS="caaatcttcagtaaggctattcctttttttaaagtCGtttaa
                     acctgtttTTTGTTACAATTTTATGGTGacattcatgatttttaatgttattttgtca
                     t"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    854943..854949
                     /Source="Nicolas_upshift_promotors"
                     /id="U657"
                     /multdbtbs="SigB,SigX"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp=1
                     /psig=1
                     /xcortree=124
                     /SigmaFactorBS="taaaaatcatgaatgtcaccataaaattgtaacaaaaaacaG
                     GTTTAAacgactttaaaaaaAGGAATAGCCTTACTGAAGatttgtgtaaaactcccct
                     a"
                     /listShort="S294, csbB, S295, yfhO"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-35    complement(854951..854952)
                     /Source="Nicolas_upshift_promotors"
                     /id="U656"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.446553446553447"
                     /psig="0.97902097902098"
                     /xcortree=2407
                     /SigmaFactorBS="caaatcttcagtaaggctattcctttttttaaagtCGtttaa
                     acctgtttTTTGTTACAATTTTATGGTGacattcatgatttttaatgttattttgtca
                     t"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     S_feature       854962..855042
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_930737_930817"
                     /HighExp="M9-stat, LBGexp, Lbexp, T0.30H, dia0, T1.30H,
                     T1.0H, LBGtran, Paraq, T2.30H"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigB, SigGF, SigB"
                     /TUshortPSig="1, 0.99, 1"
                     /TUlongSig="SigWXY"
                     /TUlongPSig=1
                     /label="S294"
     upshifts        854962
                     /Source="Nicolas_upshifts"
                     /id="U657"
                     /multdbtbs="SigB,SigX"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp=1
                     /psig=1
                     /xcortree=124
                     /SigmaFactorBS="taaaaatcatgaatgtcaccataaaattgtaacaaaaaacaG
                     GTTTAAacgactttaaaaaaAGGAATAGCCTTACTGAAGatttgtgtaaaactcccct
                     a"
                     /listShort="S294, csbB, S295, yfhO"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-10    854964..854982
                     /Source="Nicolas_upshift_promotors"
                     /id="U657"
                     /multdbtbs="SigB,SigX"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp=1
                     /psig=1
                     /xcortree=124
                     /SigmaFactorBS="taaaaatcatgaatgtcaccataaaattgtaacaaaaaacaG
                     GTTTAAacgactttaaaaaaAGGAATAGCCTTACTGAAGatttgtgtaaaactcccct
                     a"
                     /listShort="S294, csbB, S295, yfhO"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     CDS             855043..856032
                     /gene="csbB"
                     /locus_tag="BSU_08600"
                     /old_locus_tag="BSU08600"
                     /EC_number="2.4.-.-"
                     /function="16.8: Protect"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 8921856, 9636707,
                     23632331; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative bactoprenol glycosyl transferase,
                     phageorigin"
                     /protein_id="NP_388740.1"
                     /db_xref="EnsemblGenomes-Gn:BSU08600"
                     /db_xref="EnsemblGenomes-Tr:CAB12688"
                     /db_xref="GOA:Q45539"
                     /db_xref="InterPro:IPR001173"
                     /db_xref="InterPro:IPR029044"
                     /db_xref="SubtiList:BG11834"
                     /db_xref="UniProtKB/Swiss-Prot:Q45539"
                     /translation="MKQGLISIIIPSYNEGYNVKLIHESLKKEFKNIHYDYEIFFIND
                     GSVDDTLQQIKDLAATCSRVKYISFSRNFGKEAAILAGFEHVQGEAVIVMDADLQHPT
                     YLLKEFIKGYEEGYDQVIAQRNRKGDSFVRSLLSSMYYKFINKAVEVDLRDGVGDFRL
                     LSRQAVNALLKLSEGNRFSKGLFCWIGFDQKIVFYENVERKNGTSKWSFSSLFNYGMD
                     GVVSFNHKPLRLCFYTGIFILLLSIIYIIATFVKILTNGISVPGYFTIISAVLFLGGV
                     QLLSLGIIGEYIGRIYYETKKRPHYLIKEANIPNKDLPETNELKSMRRLTKMH*"
                     /label="csbB CDS"
     gene            855043..856032
                     /gene="csbB"
                     /locus_tag="BSU_08600"
                     /old_locus_tag="BSU08600"
                     /label="csbB gene"
     upshifts        complement(855192)
                     /Source="Nicolas_upshifts"
                     /id="U658"
                     /multdbtbs="-"
                     /comp="M13"
                     /sig="Sig-"
                     /pcomp="0.712287712287712"
                     /psig="0.037962037962038"
                     /xcortree=125
                     /SigmaFactorBS="agaaaaagatatatattttacccggctgcaCGTCGctgccaa
                     gtctttgatCTGCTgaagcgtgtcatcaacacttccgtcgtttatgaagaatatttca
                     t"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-10    complement(855197..855201)
                     /Source="Nicolas_upshift_promotors"
                     /id="U658"
                     /multdbtbs="-"
                     /comp="M13"
                     /sig="Sig-"
                     /pcomp="0.712287712287712"
                     /psig="0.037962037962038"
                     /xcortree=125
                     /SigmaFactorBS="agaaaaagatatatattttacccggctgcaCGTCGctgccaa
                     gtctttgatCTGCTgaagcgtgtcatcaacacttccgtcgtttatgaagaatatttca
                     t"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     promotor_-35    complement(855218..855222)
                     /Source="Nicolas_upshift_promotors"
                     /id="U658"
                     /multdbtbs="-"
                     /comp="M13"
                     /sig="Sig-"
                     /pcomp="0.712287712287712"
                     /psig="0.037962037962038"
                     /xcortree=125
                     /SigmaFactorBS="agaaaaagatatatattttacccggctgcaCGTCGctgccaa
                     gtctttgatCTGCTgaagcgtgtcatcaacacttccgtcgtttatgaagaatatttca
                     t"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     S_feature       856033..856103
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_931808_931878"
                     /HighExp="LPhT, Heat, Etha, LBGexp, M9-stat, LBGtran,
                     Lbexp, Sw, dia0, Oxctl"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigB, SigB"
                     /TUshortPSig="1, 1"
                     /TUlongSig="SigWXY"
                     /TUlongPSig=1
                     /label="S295"
     CDS             856104..858689
                     /gene="yfhO"
                     /locus_tag="BSU_08610"
                     /old_locus_tag="BSU08610"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 23632331; Product type
                     m: membrane component"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved membrane protein"
                     /protein_id="NP_388741.2"
                     /db_xref="EnsemblGenomes-Gn:BSU08610"
                     /db_xref="EnsemblGenomes-Tr:CAB12689"
                     /db_xref="GOA:O31582"
                     /db_xref="InterPro:IPR018580"
                     /db_xref="SubtiList:BG12889"
                     /db_xref="UniProtKB/Swiss-Prot:O31582"
                     /translation="MKRKHIMIYAASLLVSVLAHAFFVKEWAEGRYMTGPGDGLAQMI
                     VFKKLLFDQYTHGNFFYNYSFGLGGGTFSQLGYYFSASFLFLAVSAAVWLLQAVQLIG
                     ETDTLFWAESAVFISIFKLSLIIFTSASVFHYLLKHRAASFTGAVLYGVSIIYFRHEA
                     YWEFFTDTMVWLPLLVLGAEKIIRERRPAWFIVACSLTLINNFYFAYINLIFIGIYVL
                     FRWLIRLEPHEEKRWIQIRLFLVSGFISFGISAAAFVPVVYGFLNNLRPPYSQKIEWL
                     NFDDNILFSSRIIIVPAAFLLFLFIISFYKNRVFRLFAGLSLLFILFHFSPYAASVFN
                     GFSAPQNRFEYVLAFTIAGAAAAGLSQLSELKRKELLPAAAVVLLLYLYHIQRYKLDI
                     WKPANESILLLLLMTIAALFAAAFAKKRAKMAVYGIIILSSLFVANSYQKYALSEGGD
                     LDSVTKEYLTSEEYRGRESSELIRRLQKEDDDPLMRIDWMNGVRNNTPIIYGFNGFSA
                     YSSILNKDLLAFYWNDLSIDMGRESVSRYASLGDRANLYSLLYGKYYMTEKTNEASVP
                     YGFKKHLETEHYAVYENQYMLPFVKTADAIYSESELDRLPALAKEQAMLKGIILKDPS
                     GKTEQTPKPSNLITKSDITAKQAQYQNGLLTVTGENGGELIITPKQPSSAPGDYYVSF
                     YLKSKAKDKGFTLKVNDYVTTRKSNKSIYKTGVNNITVRVPKSGHISINLPKGTYELR
                     NIALYEENYQTLKNAVMQNKTEKADKLNWNKNRLTFSYHLSKDQYIMLPIPYEKGWEL
                     KINGKTQKIEKADYAFIGFKAQKGDNHIELTYYPPYFKISAIISLVSLLLAVFYIRRK
                     KPGSI*"
                     /label="yfhO CDS"
     gene            856104..858689
                     /gene="yfhO"
                     /locus_tag="BSU_08610"
                     /old_locus_tag="BSU08610"
                     /label="yfhO gene"
     downshifts      858658
                     /Source="Nicolas_upshifts"
                     /id="D428"
                     /incds=0
                     /nref=63
                     /ntot=217
                     /MaxReadThrough="2.13267"
                     /MaxDrop="4.17784"
                     /score="2.41489488"
                     /energy="-13.3"
                     /TU="NA"
                     /idTUdmin="U657"
                     /TUdmin="-1"
                     /isTUend="TRUE"
                     /label="downshifts"
     CDS             complement(858682..859665)
                     /gene="yfhP"
                     /locus_tag="BSU_08620"
                     /old_locus_tag="BSU08620"
                     /function="16.5: Explore"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 10463184, 10524235,
                     15849754, 16850406, 24237659; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative membrane hydrolase"
                     /protein_id="NP_388742.1"
                     /db_xref="EnsemblGenomes-Gn:BSU08620"
                     /db_xref="EnsemblGenomes-Tr:CAB12690"
                     /db_xref="GOA:O31583"
                     /db_xref="InterPro:IPR007404"
                     /db_xref="SubtiList:BG12890"
                     /db_xref="UniProtKB/Swiss-Prot:O31583"
                     /translation="MDTGTHVVMGIALGGIATLDPVVGSDPAMAHAVMIATLAGSQAP
                     DIDTVLKLKNNAVYIRNHRGFTHSIPAVLFWSVIIPAILYLFYPQADFLHLWLWTLLA
                     VVLHVFVDIFNAYGTQAIRPFSKKWVALGLINTFDPFIFISHLAAIAIWYAGGSPGIT
                     FLSLYIILVGYYLVRLIMQLRIKRKLHEMIHDEIESIIISPTMKFRQWRIAVTTAHAF
                     YVGRSMEGHVVILDTFNRVPVPETDVMHAAKQDDNIAAFLSFSPVYRWEVDTFKDHYE
                     VRFIDLRYRSKGHYPFVAIVHIGHDLTIRSSYTGWIFSEEKLQKKLKLGSI*"
                     /label="yfhP CDS"
     gene            complement(858682..859665)
                     /gene="yfhP"
                     /locus_tag="BSU_08620"
                     /old_locus_tag="BSU08620"
                     /label="yfhP gene"
     downshifts      complement(858716)
                     /Source="Nicolas_upshifts"
                     /id="D429"
                     /incds=0
                     /nref=28
                     /ntot=200
                     /MaxReadThrough="2.65266"
                     /MaxDrop="4.43244"
                     /score="25.5564412"
                     /energy="-17.5"
                     /TU="NA"
                     /idTUdmin="U661"
                     /TUdmin="-3"
                     /isTUend="TRUE"
                     /label="downshifts"
     promotor_-35    859139..859148
                     /Source="Nicolas_upshift_promotors"
                     /id="U659"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp="0.999000999001"
                     /psig="0.999000999001"
                     /xcortree=1381
                     /SigmaFactorBS="atgaagcttccgtttaattctcagctgcatgatcAGGCGCAC
                     CAagtagtagcctaCCAATATGATATATAAGCTGagaaacgtgatgccgggactcccg
                     c"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    859161..859180
                     /Source="Nicolas_upshift_promotors"
                     /id="U659"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp="0.999000999001"
                     /psig="0.999000999001"
                     /xcortree=1381
                     /SigmaFactorBS="atgaagcttccgtttaattctcagctgcatgatcAGGCGCAC
                     CAagtagtagcctaCCAATATGATATATAAGCTGagaaacgtgatgccgggactcccg
                     c"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        859165
                     /Source="Nicolas_upshifts"
                     /id="U659"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp="0.999000999001"
                     /psig="0.999000999001"
                     /xcortree=1381
                     /SigmaFactorBS="atgaagcttccgtttaattctcagctgcatgatcAGGCGCAC
                     CAagtagtagcctaCCAATATGATATATAAGCTGagaaacgtgatgccgggactcccg
                     c"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     S_feature       complement(859666..859813)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_935441_935588_c"
                     /HighExp="Diami, dia15, M9-stat, dia5, Etha, H2O2, S6,
                     Salt, Lbtran, LBGstat"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.997"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S296"
     promotor_-35    859770..859774
                     /Source="Nicolas_upshift_promotors"
                     /id="U660"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.718281718281718"
                     /psig="0.998001998001998"
                     /xcortree=2674
                     /SigmaFactorBS="tttaaactgattcaatcgttctcatatgtttccGCTTTttct
                     ttattactattTAATGTAACATATTATCGTActgtgcccttagtgtacaacaaaaaac
                     a"
                     /listShort="S297, yfhQ, S298, fabL, sspE"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    859790..859809
                     /Source="Nicolas_upshift_promotors"
                     /id="U660"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.718281718281718"
                     /psig="0.998001998001998"
                     /xcortree=2674
                     /SigmaFactorBS="tttaaactgattcaatcgttctcatatgtttccGCTTTttct
                     ttattactattTAATGTAACATATTATCGTActgtgcccttagtgtacaacaaaaaac
                     a"
                     /listShort="S297, yfhQ, S298, fabL, sspE"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        859797
                     /Source="Nicolas_upshifts"
                     /id="U660"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.718281718281718"
                     /psig="0.998001998001998"
                     /xcortree=2674
                     /SigmaFactorBS="tttaaactgattcaatcgttctcatatgtttccGCTTTttct
                     ttattactattTAATGTAACATATTATCGTActgtgcccttagtgtacaacaaaaaac
                     a"
                     /listShort="S297, yfhQ, S298, fabL, sspE"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     S_feature       859803..859880
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_935578_935655"
                     /HighExp="H2O2, G150, G180, LBGstat, dia15, Diami, Oxctl,
                     Paraq, G135, dia0"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.998"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S297"
     promotor_-10    complement(859811..859830)
                     /Source="Nicolas_upshift_promotors"
                     /id="U661"
                     /multdbtbs="SigK,SigK"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.875124875124875"
                     /psig="0.997002997002997"
                     /xcortree=643
                     /SigmaFactorBS="tctccccagtctttcgcgcccCGCTTTTCtttagactgtttt
                     tTGTTGTACACTAAGGGCACAgtacgataatatgttacattaaatagtaataaagaaa
                     a"
                     /listShort="S296, yfhP"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(859813)
                     /Source="Nicolas_upshifts"
                     /id="U661"
                     /multdbtbs="SigK,SigK"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.875124875124875"
                     /psig="0.997002997002997"
                     /xcortree=643
                     /SigmaFactorBS="tctccccagtctttcgcgcccCGCTTTTCtttagactgtttt
                     tTGTTGTACACTAAGGGCACAgtacgataatatgttacattaaatagtaataaagaaa
                     a"
                     /listShort="S296, yfhP"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(859845..859852)
                     /Source="Nicolas_upshift_promotors"
                     /id="U661"
                     /multdbtbs="SigK,SigK"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.875124875124875"
                     /psig="0.997002997002997"
                     /xcortree=643
                     /SigmaFactorBS="tctccccagtctttcgcgcccCGCTTTTCtttagactgtttt
                     tTGTTGTACACTAAGGGCACAgtacgataatatgttacattaaatagtaataaagaaa
                     a"
                     /listShort="S296, yfhP"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             859881..860990
                     /gene="mutY"
                     /locus_tag="BSU_08630"
                     /old_locus_tag="BSU08630"
                     /EC_number="3.2.2.-"
                     /function="16.8: Protect"
                     /function="16.6: Maintain"
                     /experiment="publication(s) with functional evidences,
                     PMID:10463184, 20971907, 21954439, 27399782"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 10463184, 20971907,
                     21954439, 27399782; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="A/G-specific adenine glycosylase or
                     DNA-(apurinic or apyrimidinic site) lyase"
                     /protein_id="NP_388743.1"
                     /db_xref="EnsemblGenomes-Gn:BSU08630"
                     /db_xref="EnsemblGenomes-Tr:CAB12691"
                     /db_xref="GOA:O31584"
                     /db_xref="InterPro:IPR003265"
                     /db_xref="InterPro:IPR003651"
                     /db_xref="InterPro:IPR005760"
                     /db_xref="InterPro:IPR011257"
                     /db_xref="InterPro:IPR015797"
                     /db_xref="InterPro:IPR023170"
                     /db_xref="InterPro:IPR029119"
                     /db_xref="SubtiList:BG12891"
                     /db_xref="UniProtKB/Swiss-Prot:O31584"
                     /translation="MNVLEDKLKQKDIQQFRDDLISWFEREQRVLPWREDQDPYKVWV
                     SEVMLQQTRVETVIPYFLRFVEQFPTVEALADADEEKVLKAWEGLGYYSRVRNLQSAV
                     KEVKQEYGGIVPPDEKDFGGLKGVGPYTKGAVLSIAYNKPIPAVDGNVMRVMSRILSI
                     WDDIAKPKTRTIFEDAIRAFISKEKPSEFNQGLMELGALICTPKSPSCLLCPVQQHCS
                     AFEEGTERELPVKSKKKKPGIKTMAAIVLTDEDGQVYIHKRPSKGLLANLWEFPNLET
                     QKGIKTEREQLIAFLENEYGIQADISDLQGVVEHVFTHLVWNISVFFGKVKQVSDTSK
                     LKKVTKEELEQFAFPVSHQKIWKMAGEAAAISAAP*"
                     /label="mutY CDS"
     gene            859881..860990
                     /gene="mutY"
                     /locus_tag="BSU_08630"
                     /old_locus_tag="BSU08630"
                     /label="mutY gene"
     promotor_-35    860827..860831
                     /Source="Nicolas_upshift_promotors"
                     /id="U662"
                     /multdbtbs="SigA"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.556443556443556"
                     /psig="0.997002997002997"
                     /xcortree=2563
                     /SigmaFactorBS="gtagtcgagcatgttttcacccacctggTATGGaatatttca
                     gtgtttTTCGGTAAAGTAAAACAAGTgtcggataccagcaagctgaaaaaagtaacga
                     a"
                     /listShort="S298, fabL, sspE"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    860847..860866
                     /Source="Nicolas_upshift_promotors"
                     /id="U662"
                     /multdbtbs="SigA"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.556443556443556"
                     /psig="0.997002997002997"
                     /xcortree=2563
                     /SigmaFactorBS="gtagtcgagcatgttttcacccacctggTATGGaatatttca
                     gtgtttTTCGGTAAAGTAAAACAAGTgtcggataccagcaagctgaaaaaagtaacga
                     a"
                     /listShort="S298, fabL, sspE"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        860859
                     /Source="Nicolas_upshifts"
                     /id="U662"
                     /multdbtbs="SigA"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.556443556443556"
                     /psig="0.997002997002997"
                     /xcortree=2563
                     /SigmaFactorBS="gtagtcgagcatgttttcacccacctggTATGGaatatttca
                     gtgtttTTCGGTAAAGTAAAACAAGTgtcggataccagcaagctgaaaaaagtaacga
                     a"
                     /listShort="S298, fabL, sspE"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     S_feature       860991..861303
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_936766_937078"
                     /HighExp="H2O2, G150, dia15, G135, G180, Oxctl, Paraq,
                     dia0, LBGexp, Lbexp"
                     /AntisenseName="yfhS"
                     /AntisenseCor="-0.72611377663365595"
                     /AntisenseRegPval="-44.6"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA, SigA"
                     /TUshortPSig="0.997, 0.998"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S298"
     CDS             complement(860998..861222)
                     /gene="yfhS"
                     /locus_tag="BSU_08640"
                     /old_locus_tag="BSU08640"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms; PubMedId: 10463184"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved protein related to sporulation"
                     /protein_id="NP_388744.1"
                     /db_xref="EnsemblGenomes-Gn:BSU08640"
                     /db_xref="EnsemblGenomes-Tr:CAB12692"
                     /db_xref="SubtiList:BG12892"
                     /db_xref="UniProtKB/Swiss-Prot:O31585"
                     /translation="MYVGRDMSELNMVSKKDWKNSELAYFHHAFQQIMPYLNEEGQSK
                     YRELTQEIEARGGMKRNEADYSHGTRVSYD*"
                     /label="yfhS CDS"
     gene            complement(860998..861222)
                     /gene="yfhS"
                     /locus_tag="BSU_08640"
                     /old_locus_tag="BSU08640"
                     /label="yfhS gene"
     promotor_-10    complement(861252..861263)
                     /Source="Nicolas_upshift_promotors"
                     /id="U663"
                     /multdbtbs="SigE"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp=1
                     /psig=1
                     /xcortree=858
                     /SigmaFactorBS="ttttgttccatttttcctcatctccttgtagCGTATAGttct
                     tttatttccACAAACAATAATggcaagaactttaaagggggtcttctgttatgtatgt
                     c"
                     /listShort="yfhS"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(861254)
                     /Source="Nicolas_upshifts"
                     /id="U663"
                     /multdbtbs="SigE"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp=1
                     /psig=1
                     /xcortree=858
                     /SigmaFactorBS="ttttgttccatttttcctcatctccttgtagCGTATAGttct
                     tttatttccACAAACAATAATggcaagaactttaaagggggtcttctgttatgtatgt
                     c"
                     /listShort="yfhS"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(861277..861283)
                     /Source="Nicolas_upshift_promotors"
                     /id="U663"
                     /multdbtbs="SigE"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp=1
                     /psig=1
                     /xcortree=858
                     /SigmaFactorBS="ttttgttccatttttcctcatctccttgtagCGTATAGttct
                     tttatttccACAAACAATAATggcaagaactttaaagggggtcttctgttatgtatgt
                     c"
                     /listShort="yfhS"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             861304..862056
                     /gene="fabL"
                     /locus_tag="BSU_08650"
                     /old_locus_tag="BSU08650"
                     /EC_number="1.3.1.10"
                     /function="16.2: Construct biomass (Anabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:11007778, 12440970, 17329825, 21185310"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 11007778, 12440970,
                     17329825, 21185310; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="enoyl-acyl carrier protein reductase III"
                     /protein_id="NP_388745.1"
                     /db_xref="EnsemblGenomes-Gn:BSU08650"
                     /db_xref="EnsemblGenomes-Tr:CAB12693"
                     /db_xref="GOA:P71079"
                     /db_xref="InterPro:IPR002347"
                     /db_xref="InterPro:IPR036291"
                     /db_xref="PDB:3OIC"
                     /db_xref="PDB:3OID"
                     /db_xref="SubtiList:BG12221"
                     /db_xref="UniProtKB/Swiss-Prot:P71079"
                     /translation="MEQNKCALVTGSSRGVGKAAAIRLAENGYNIVINYARSKKAALE
                     TAEEIEKLGVKVLVVKANVGQPAKIKEMFQQIDETFGRLDVFVNNAASGVLRPVMELE
                     ETHWDWTMNINAKALLFCAQEAAKLMEKNGGGHIVSISSLGSIRYLENYTTVGVSKAA
                     LEALTRYLAVELSPKQIIVNAVSGGAIDTDALKHFPNREDLLEDARQNTPAGRMVEIK
                     DMVDTVEFLVSSKADMIRGQTIIVDGGRSLLV*"
                     /label="fabL CDS"
     gene            861304..862056
                     /gene="fabL"
                     /locus_tag="BSU_08650"
                     /old_locus_tag="BSU08650"
                     /label="fabL gene"
     promotor_-35    862073..862079
                     /Source="Nicolas_upshift_promotors"
                     /id="U664"
                     /multdbtbs="SigG"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp="0.988011988011988"
                     /psig="0.988011988011988"
                     /xcortree=800
                     /SigmaFactorBS="cggacgctcactgctcgtttaaaaatttttaaaaaagaGGAA
                     TAGctatacgatcacctGCACATTCTAATgaccgtggaggtgataacaatggctaact
                     c"
                     /listShort="sspE"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    862094..862105
                     /Source="Nicolas_upshift_promotors"
                     /id="U664"
                     /multdbtbs="SigG"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp="0.988011988011988"
                     /psig="0.988011988011988"
                     /xcortree=800
                     /SigmaFactorBS="cggacgctcactgctcgtttaaaaatttttaaaaaagaGGAA
                     TAGctatacgatcacctGCACATTCTAATgaccgtggaggtgataacaatggctaact
                     c"
                     /listShort="sspE"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        862095
                     /Source="Nicolas_upshifts"
                     /id="U664"
                     /multdbtbs="SigG"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp="0.988011988011988"
                     /psig="0.988011988011988"
                     /xcortree=800
                     /SigmaFactorBS="cggacgctcactgctcgtttaaaaatttttaaaaaagaGGAA
                     TAGctatacgatcacctGCACATTCTAATgaccgtggaggtgataacaatggctaact
                     c"
                     /listShort="sspE"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-10    complement(862102..862116)
                     /Source="Nicolas_upshift_promotors"
                     /id="U665"
                     /multdbtbs="-"
                     /comp="M15"
                     /sig="Sig-"
                     /pcomp="0.841158841158841"
                     /psig="0.022977022977023"
                     /xcortree=711
                     /SigmaFactorBS="tggttttgttttctaacttgttgagcgtttgttttgctgaag
                     ttatttgagttaGCCATtgttatcaCCTCCACGGTCATTAgaatgtgcaggtgatcgt
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(862123)
                     /Source="Nicolas_upshifts"
                     /id="U665"
                     /multdbtbs="-"
                     /comp="M15"
                     /sig="Sig-"
                     /pcomp="0.841158841158841"
                     /psig="0.022977022977023"
                     /xcortree=711
                     /SigmaFactorBS="tggttttgttttctaacttgttgagcgtttgttttgctgaag
                     ttatttgagttaGCCATtgttatcaCCTCCACGGTCATTAgaatgtgcaggtgatcgt
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(862125..862129)
                     /Source="Nicolas_upshift_promotors"
                     /id="U665"
                     /multdbtbs="-"
                     /comp="M15"
                     /sig="Sig-"
                     /pcomp="0.841158841158841"
                     /psig="0.022977022977023"
                     /xcortree=711
                     /SigmaFactorBS="tggttttgttttctaacttgttgagcgtttgttttgctgaag
                     ttatttgagttaGCCATtgttatcaCCTCCACGGTCATTAgaatgtgcaggtgatcgt
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             862125..862379
                     /gene="sspE"
                     /locus_tag="BSU_08660"
                     /old_locus_tag="BSU08660"
                     /function="16.8: Protect"
                     /function="16.5: Explore"
                     /experiment="publication(s) with functional evidences,
                     PMID:1744043, 7592342, 9540829, 19542328, 23314362"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 1744043, 7592342,
                     9540829, 19542328, 23314362; Product type cp: cell
                     process"
                     /codon_start=1
                     /transl_table=11
                     /product="small acid-soluble spore protein (gamma-type
                     SASP)"
                     /protein_id="NP_388746.1"
                     /db_xref="EnsemblGenomes-Gn:BSU08660"
                     /db_xref="EnsemblGenomes-Tr:CAB12694"
                     /db_xref="GOA:P07784"
                     /db_xref="InterPro:IPR006341"
                     /db_xref="SubtiList:BG10789"
                     /db_xref="UniProtKB/Swiss-Prot:P07784"
                     /translation="MANSNNFSKTNAQQVRKQNQQSAAGQGQFGTEFASETNAQQVRK
                     QNQQSAGQQGQFGTEFASETDAQQVRQQNQSAEQNKQQNS*"
                     /label="sspE CDS"
     gene            862125..862379
                     /gene="sspE"
                     /locus_tag="BSU_08660"
                     /old_locus_tag="BSU08660"
                     /label="sspE gene"
     downshifts      862377
                     /Source="Nicolas_upshifts"
                     /id="D430"
                     /incds=0
                     /nref=261
                     /ntot=269
                     /MaxReadThrough="1.59207"
                     /MaxDrop="8.74804"
                     /score="9.25353719"
                     /energy="-9.5"
                     /TU="NA"
                     /idTUdmin="U660"
                     /TUdmin=0
                     /isTUend="TRUE"
                     /label="downshifts"
     downshifts      complement(862402)
                     /Source="Nicolas_upshifts"
                     /id="D431"
                     /incds=0
                     /nref=3
                     /ntot=21
                     /MaxReadThrough="1.21036"
                     /MaxDrop="5.14076"
                     /score="-9.78320441"
                     /energy="-7.1"
                     /TU="NA"
                     /idTUdmin="U663"
                     /TUdmin="-1687"
                     /isTUend="FALSE"
                     /label="downshifts"
     CDS             862468..862812
                     /gene="ygaB"
                     /locus_tag="BSU_08670"
                     /old_locus_tag="BSU08670"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved hypothetical protein"
                     /protein_id="NP_388747.1"
                     /db_xref="EnsemblGenomes-Gn:BSU08670"
                     /db_xref="EnsemblGenomes-Tr:CAB12695"
                     /db_xref="InterPro:IPR025572"
                     /db_xref="SubtiList:BG12222"
                     /db_xref="UniProtKB/Swiss-Prot:P71080"
                     /translation="MSQRVCFMEIEMIKGGNVYTFIRLKEEPMTEFEKLVSEQMKTMD
                     KLLDLQSELDRCKQIEAELRHLERDARLRGIQAEIAVKRKHLADIQDMFQKQTEQVIR
                     SYRSSEKPSSFV*"
                     /label="ygaB CDS"
     gene            862468..862812
                     /gene="ygaB"
                     /locus_tag="BSU_08670"
                     /old_locus_tag="BSU08670"
                     /label="ygaB gene"
     promotor_-35    862475..862483
                     /Source="Nicolas_upshift_promotors"
                     /id="U666"
                     /multdbtbs="-"
                     /comp="M1"
                     /sig="SigH"
                     /pcomp=1
                     /psig=1
                     /xcortree=444
                     /SigmaFactorBS="aaaaacgacaaaacttgtggaaggtctacagaatgagtcAAA
                     GGGTTTgctttatggaGATCGAAATGATTAAAGGAggaaatgtttatactttcatcag
                     g"
                     /listShort="ygaB, S299, ygaC"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    862494..862512
                     /Source="Nicolas_upshift_promotors"
                     /id="U666"
                     /multdbtbs="-"
                     /comp="M1"
                     /sig="SigH"
                     /pcomp=1
                     /psig=1
                     /xcortree=444
                     /SigmaFactorBS="aaaaacgacaaaacttgtggaaggtctacagaatgagtcAAA
                     GGGTTTgctttatggaGATCGAAATGATTAAAGGAggaaatgtttatactttcatcag
                     g"
                     /listShort="ygaB, S299, ygaC"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        862496
                     /Source="Nicolas_upshifts"
                     /id="U666"
                     /multdbtbs="-"
                     /comp="M1"
                     /sig="SigH"
                     /pcomp=1
                     /psig=1
                     /xcortree=444
                     /SigmaFactorBS="aaaaacgacaaaacttgtggaaggtctacagaatgagtcAAA
                     GGGTTTgctttatggaGATCGAAATGATTAAAGGAggaaatgtttatactttcatcag
                     g"
                     /listShort="ygaB, S299, ygaC"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     downshifts      862795
                     /Source="Nicolas_upshifts"
                     /id="D432"
                     /incds=0
                     /nref=1
                     /ntot=27
                     /MaxReadThrough="4.84572"
                     /MaxDrop="3.29993"
                     /score="13.9694142"
                     /energy="-11.5"
                     /TU="U666"
                     /idTUdmin="U660"
                     /TUdmin=418
                     /isTUend="FALSE"
                     /label="downshifts"
     promotor_-35    862851..862858
                     /Source="Nicolas_upshift_promotors"
                     /id="U667"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.641358641358641"
                     /psig=1
                     /xcortree=2074
                     /SigmaFactorBS="tgtgccattccccggccggaatggctctttTATTTTCAtttt
                     tcaatttgtAACGTTATAATAGGTAAAAGacgttgtcggtaagcaaatttggacatac
                     t"
                     /listShort="S299, ygaC, ygaD"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    862872..862891
                     /Source="Nicolas_upshift_promotors"
                     /id="U667"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.641358641358641"
                     /psig=1
                     /xcortree=2074
                     /SigmaFactorBS="tgtgccattccccggccggaatggctctttTATTTTCAtttt
                     tcaatttgtAACGTTATAATAGGTAAAAGacgttgtcggtaagcaaatttggacatac
                     t"
                     /listShort="S299, ygaC, ygaD"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     S_feature       862881..862955
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_938656_938730"
                     /HighExp="Etha, dia15, dia5, Diami, Salt, H2O2, BC, T5.0H,
                     Cold, C90"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA, SigH"
                     /TUshortPSig="1, 1"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S299"
     upshifts        862881
                     /Source="Nicolas_upshifts"
                     /id="U667"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.641358641358641"
                     /psig=1
                     /xcortree=2074
                     /SigmaFactorBS="tgtgccattccccggccggaatggctctttTATTTTCAtttt
                     tcaatttgtAACGTTATAATAGGTAAAAGacgttgtcggtaagcaaatttggacatac
                     t"
                     /listShort="S299, ygaC, ygaD"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             862956..863486
                     /gene="ygaC"
                     /locus_tag="BSU_08680"
                     /old_locus_tag="BSU08680"
                     /function="16.3: Control"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 19383706, 22333191;
                     Product type f: factor"
                     /codon_start=1
                     /transl_table=11
                     /product="putative RNA binding factor"
                     /protein_id="NP_388748.3"
                     /db_xref="EnsemblGenomes-Gn:BSU08680"
                     /db_xref="EnsemblGenomes-Tr:CAB12696"
                     /db_xref="InterPro:IPR007295"
                     /db_xref="InterPro:IPR016882"
                     /db_xref="InterPro:IPR035930"
                     /db_xref="SubtiList:BG12223"
                     /db_xref="UniProtKB/Swiss-Prot:Q796Z1"
                     /translation="MGYPKEGETIQIHSYKHNGLIHRIWNETTILKSTEMCVIGANDR
                     TMVTESDGRTWITREPAICYFHARQWFNVIGMLREDGVHYYCNISSPFAYDGEAIKYI
                     DYDLDVKVFPDMTYNILDEDEYDDHRKAMNYPKEIDSILRDYLNTLLHWIHQRQGPFA
                     PEFVDMWYERYLRYTK*"
                     /label="ygaC CDS"
     gene            862956..863486
                     /gene="ygaC"
                     /locus_tag="BSU_08680"
                     /old_locus_tag="BSU08680"
                     /label="ygaC gene"
     downshifts      863477
                     /Source="Nicolas_upshifts"
                     /id="D433"
                     /incds=0
                     /nref=8
                     /ntot=135
                     /MaxReadThrough="6.10669"
                     /MaxDrop="3.97335"
                     /score="-5.22328881"
                     /energy="-7"
                     /TU="U667"
                     /idTUdmin="U666"
                     /TUdmin=0
                     /isTUend="TRUE"
                     /label="downshifts"
     CDS             863574..865316
                     /gene="ygaD"
                     /locus_tag="BSU_08690"
                     /old_locus_tag="BSU08690"
                     /function="16.1: Circulate"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="putative ABC transporter (ATP-binding protein)"
                     /protein_id="NP_388749.2"
                     /db_xref="EnsemblGenomes-Gn:BSU08690"
                     /db_xref="EnsemblGenomes-Tr:CAB12697"
                     /db_xref="GOA:P71082"
                     /db_xref="InterPro:IPR003439"
                     /db_xref="InterPro:IPR003593"
                     /db_xref="InterPro:IPR011527"
                     /db_xref="InterPro:IPR017871"
                     /db_xref="InterPro:IPR027417"
                     /db_xref="InterPro:IPR036640"
                     /db_xref="SubtiList:BG12224"
                     /db_xref="UniProtKB/Swiss-Prot:P71082"
                     /translation="MGVMKRYMQFVKPYKKQIFVTVLIGIVKFSIPLALPLLLKYVVD
                     DIIQGGGTASDKTTSLFTIMAIMFALFLILRPPVEYYRQYFAQWTASKVLYDIRAKLF
                     DHIQKLSLRFYANTRTGEVISRVINDVEQTKDFVITGLMNIWLDMLTILIVISIMLTL
                     DVKLTLISIVLFPLYGISVKYFYGRLRKLTRERSQALAQVQGHLHERIQGMPVIRSFA
                     IEDHEQAQFNEKNGHFLDKAIRHTNWNAKTFAVVNTITDLAPLIVIACAGYFVINGPL
                     TVGTMVAFVGYIDRMYNPVRRLINSSTTLTQSIASMDRVFEFIDEPYELTDKPNAIKA
                     DQIRGGVEFQNVSFQYEKDKENILHDVSLKVNRGETVALVGMSGGGKSTLVSLIPRFY
                     DVTSGRLLIDGTDIRDYEARSLRNQVGMVLQDTFLFSETIRENIAIGKPDATLEEIIE
                     AAKAANAHEFIMSFPEGYETRVGERGVKLSGGQKQRISIARVFLKNPPLLILDEATSA
                     LDLESEHYIQEAMDKLAKDRTTFVVAHRLSTITHADKIVVMENGTIIEIGTHDELMDY
                     ESQYKHLFTIQNLN*"
                     /label="ygaD CDS"
     gene            863574..865316
                     /gene="ygaD"
                     /locus_tag="BSU_08690"
                     /old_locus_tag="BSU08690"
                     /label="ygaD gene"
     downshifts      865303
                     /Source="Nicolas_upshifts"
                     /id="D434"
                     /incds=0
                     /nref=87
                     /ntot=233
                     /MaxReadThrough="2.54676"
                     /MaxDrop="5.20475"
                     /score="22.3853226"
                     /energy="-14.1"
                     /TU="NA"
                     /idTUdmin="U667"
                     /TUdmin=0
                     /isTUend="TRUE"
                     /label="downshifts"
     CDS             complement(865393..866454)
                     /gene="ygaE"
                     /locus_tag="BSU_08700"
                     /old_locus_tag="BSU08700"
                     /function="16.1: Circulate"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; Product type m: membrane
                     component"
                     /codon_start=1
                     /transl_table=11
                     /product="putative membrane protein"
                     /protein_id="NP_388750.1"
                     /db_xref="EnsemblGenomes-Gn:BSU08700"
                     /db_xref="EnsemblGenomes-Tr:CAB12698"
                     /db_xref="GOA:P71083"
                     /db_xref="InterPro:IPR010343"
                     /db_xref="SubtiList:BG12225"
                     /db_xref="UniProtKB/Swiss-Prot:P71083"
                     /translation="MKLGARIFKTGIAITLALYLASWIGLPAPIFAGIAAIFAIQPSI
                     YRSFLIIIDQVQANIIGAVIATVFGLIFGPSPIMIGLTAVIVITIMLKLKIEHTISIA
                     LVTVIAILESAGDDFLMFALIRTSTVILGVLSSFIVNLVFLPPKYETKLIHNTVENTE
                     EIMKWIRLSMRQSTEHSILKEDIEKLKEKMIKLDQTYLLYKEERSYFKKTTYVKSRKL
                     VLFRQAIITANRALDTLKKLHRLENEIYHMPEEFQETLTEELDYLLYWHERILMRFVG
                     KIKPHDDAVEEGIRYKQLLTKSFLKNQQNTDEELIDYNMLNIMASAVEYREQLEHLET
                     LITSFQTYHPKDCEIETEE*"
                     /label="ygaE CDS"
     gene            complement(865393..866454)
                     /gene="ygaE"
                     /locus_tag="BSU_08700"
                     /old_locus_tag="BSU08700"
                     /label="ygaE gene"
     downshifts      complement(865404)
                     /Source="Nicolas_upshifts"
                     /id="D435"
                     /incds=0
                     /nref=181
                     /ntot=254
                     /MaxReadThrough="1.1413"
                     /MaxDrop="7.13599"
                     /score="26.0617552"
                     /energy="-9.4"
                     /TU="NA"
                     /idTUdmin="U668"
                     /TUdmin="-3"
                     /isTUend="TRUE"
                     /label="downshifts"
     S_feature       complement(866455..866545)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_942230_942320_c"
                     /HighExp="G180, Oxctl, Paraq, C30, G150, LBGexp, LPhT, S4,
                     G135, S5"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.998"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S300"
     promotor_-10    complement(866543..866562)
                     /Source="Nicolas_upshift_promotors"
                     /id="U668"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.502497502497502"
                     /psig="0.998001998001998"
                     /xcortree=2441
                     /SigmaFactorBS="aagattttggtctttttctagaaaaataGCTTGAATatttgt
                     atcgatccCTGTATATTACTTAATTGTTtagcaaataaactaaccgggaattttaagg
                     a"
                     /listShort="S300, ygaE"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(866552)
                     /Source="Nicolas_upshifts"
                     /id="U668"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.502497502497502"
                     /psig="0.998001998001998"
                     /xcortree=2441
                     /SigmaFactorBS="aagattttggtctttttctagaaaaataGCTTGAATatttgt
                     atcgatccCTGTATATTACTTAATTGTTtagcaaataaactaaccgggaattttaagg
                     a"
                     /listShort="S300, ygaE"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(866577..866584)
                     /Source="Nicolas_upshift_promotors"
                     /id="U668"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.502497502497502"
                     /psig="0.998001998001998"
                     /xcortree=2441
                     /SigmaFactorBS="aagattttggtctttttctagaaaaataGCTTGAATatttgt
                     atcgatccCTGTATATTACTTAATTGTTtagcaaataaactaaccgggaattttaagg
                     a"
                     /listShort="S300, ygaE"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             complement(866674..867963)
                     /gene="gsaB"
                     /locus_tag="BSU_08710"
                     /old_locus_tag="BSU08710"
                     /EC_number="5.4.3.8"
                     /function="16.2: Construct biomass (Anabolism)"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 2b: Function from indirect experimental
                     evidences (e.g. phenotypes); PubMedId: 15231799, 19930658;
                     Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate-1-semialdehyde aminotransferase,
                     classIII aminotransferase"
                     /protein_id="NP_388751.3"
                     /db_xref="EnsemblGenomes-Gn:BSU08710"
                     /db_xref="EnsemblGenomes-Tr:CAB12699"
                     /db_xref="GOA:P71084"
                     /db_xref="InterPro:IPR004639"
                     /db_xref="InterPro:IPR005814"
                     /db_xref="InterPro:IPR015421"
                     /db_xref="InterPro:IPR015422"
                     /db_xref="InterPro:IPR015424"
                     /db_xref="SubtiList:BG11943"
                     /db_xref="UniProtKB/Swiss-Prot:P71084"
                     /translation="MHTKSIELHNEALQHIVGGVNSPSRSYKAVGGGSPVAMEKASGA
                     YFWDVDGNKYIDYLAAYGPIITGHAHPHITEAIKKAAENGVLYGTPTKHEVTFAKMLK
                     EAIPAMDKVRFVNSGTEAVMTTIRVARAYTGRTKIIKFAGCYHGHSDLVLVAAGSGPS
                     TLGTPDSAGVPKSIANEVITVPFNDIDSYKAALEKWGSEIAAVLVEPIVGNFGIVEPK
                     EGFLEQVNELTHNAGALVIYDEVITAFRFMYGGAQDLLQVKPDLTALGKIIGGGLPIG
                     AYGGKQEIMEQVAPLGPAYQAGTMAGNPASILSGIACLEVLKEKGVYEKLDHLGAMLE
                     EGILKHAETHGITITVNRLKGALTVYFSDEKVENYEQAERSDGETFSTFFKLMLERGI
                     NLAPSKYEAWFITTAHTEQDIKDTLTAVEDAFKHLKN*"
                     /label="gsaB CDS"
     gene            complement(866674..867963)
                     /gene="gsaB"
                     /locus_tag="BSU_08710"
                     /old_locus_tag="BSU08710"
                     /label="gsaB gene"
     downshifts      complement(866677)
                     /Source="Nicolas_upshifts"
                     /id="D436"
                     /incds=0
                     /nref=235
                     /ntot=258
                     /MaxReadThrough="2.54961"
                     /MaxDrop="5.8522"
                     /score="29.5551149"
                     /energy="-11"
                     /TU="NA"
                     /idTUdmin="U669"
                     /TUdmin=0
                     /isTUend="TRUE"
                     /label="downshifts"
     promotor_-10    complement(867991..868010)
                     /Source="Nicolas_upshift_promotors"
                     /id="U669"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.998001998001998"
                     /psig=1
                     /xcortree=1888
                     /SigmaFactorBS="tccagattacaaccatctcagctgaatctgaagcccgaagcc
                     aTTGTTCttgttcggaagCATGCTACAATAGAAAGGACgcatggagatataggaggtt
                     t"
                     /listShort="gsaB"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(868010)
                     /Source="Nicolas_upshifts"
                     /id="U669"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.998001998001998"
                     /psig=1
                     /xcortree=1888
                     /SigmaFactorBS="tccagattacaaccatctcagctgaatctgaagcccgaagcc
                     aTTGTTCttgttcggaagCATGCTACAATAGAAAGGACgcatggagatataggaggtt
                     t"
                     /listShort="gsaB"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     S_feature       complement(868012..868723)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_943787_944498_c"
                     /HighExp="LoTm, M9-stat, B60, S8, C30, Cold, B36, T1.30H,
                     Etha, T2.0H"
                     /AntisenseName="ygaF"
                     /AntisenseCor="-0.29702219161000198"
                     /AntisenseRegPval="-6.2"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="NA"
                     /TUshortPSig="NA"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S301"
     promotor_-35    complement(868022..868027)
                     /Source="Nicolas_upshift_promotors"
                     /id="U669"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.998001998001998"
                     /psig=1
                     /xcortree=1888
                     /SigmaFactorBS="tccagattacaaccatctcagctgaatctgaagcccgaagcc
                     aTTGTTCttgttcggaagCATGCTACAATAGAAAGGACgcatggagatataggaggtt
                     t"
                     /listShort="gsaB"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-35    868056..868063
                     /Source="Nicolas_upshift_promotors"
                     /id="U670"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.625374625374625"
                     /psig=1
                     /xcortree=2268
                     /SigmaFactorBS="aacaagaacaatggcttcgggcttcagattcagctgagaTGG
                     TTGTAatctggacaagaaTTGGATACGCTTAATAAAAAaacatccggaggtaacgtaa
                     t"
                     /listShort="ygaF, perR"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    868077..868096
                     /Source="Nicolas_upshift_promotors"
                     /id="U670"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.625374625374625"
                     /psig=1
                     /xcortree=2268
                     /SigmaFactorBS="aacaagaacaatggcttcgggcttcagattcagctgagaTGG
                     TTGTAatctggacaagaaTTGGATACGCTTAATAAAAAaacatccggaggtaacgtaa
                     t"
                     /listShort="ygaF, perR"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        868077
                     /Source="Nicolas_upshifts"
                     /id="U670"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.625374625374625"
                     /psig=1
                     /xcortree=2268
                     /SigmaFactorBS="aacaagaacaatggcttcgggcttcagattcagctgagaTGG
                     TTGTAatctggacaagaaTTGGATACGCTTAATAAAAAaacatccggaggtaacgtaa
                     t"
                     /listShort="ygaF, perR"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             868116..868589
                     /gene="bcp"
                     /locus_tag="BSU_08720"
                     /old_locus_tag="BSU08720"
                     /EC_number="1.11.1.15"
                     /function="16.8: Protect"
                     /function="16.6: Maintain"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 2a: Function from experimental evidences
                     in other organisms; PubMedId: 10644761, 11349039,
                     12950915, 21910476, 26723255; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="peroxiredoxin with versatile activity"
                     /protein_id="YP_054574.1"
                     /db_xref="EnsemblGenomes-Gn:BSU08720"
                     /db_xref="EnsemblGenomes-Tr:CAB12700"
                     /db_xref="GOA:Q796Y8"
                     /db_xref="InterPro:IPR000866"
                     /db_xref="InterPro:IPR013766"
                     /db_xref="InterPro:IPR024706"
                     /db_xref="InterPro:IPR036249"
                     /db_xref="SubtiList:BG12226"
                     /db_xref="UniProtKB/Swiss-Prot:Q796Y8"
                     /translation="MTIEIGQKAPDLELKGDHGETVKLSDYKGKYIVLYFYPKDMTPG
                     CTTEACDFRDSHESFAELDAVIIGVSPDSQEKHGKFKEKHNLPFLLLVDDEHKLAEAF
                     DVWKLKKNFGKEYMGIERSTFLIDKEGRLIKEWRKVKVKDHVAEALQTLKDMSEK*"
                     /label="bcp CDS"
     gene            868116..868589
                     /gene="bcp"
                     /locus_tag="BSU_08720"
                     /old_locus_tag="BSU08720"
                     /label="bcp gene"
     promotor_-35    868626..868633
                     /Source="Nicolas_upshift_promotors"
                     /id="U671"
                     /multdbtbs="SigA"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.608391608391608"
                     /psig=1
                     /xcortree=1534
                     /SigmaFactorBS="ctatgagcctatgcttacttttaccctgatatCAATTGACaa
                     attatcgtagaaAGAGTTACACTAATTATAAAcattacaatgtaagaattttttttag
                     a"
                     /listShort="perR"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    868648..868667
                     /Source="Nicolas_upshift_promotors"
                     /id="U671"
                     /multdbtbs="SigA"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.608391608391608"
                     /psig=1
                     /xcortree=1534
                     /SigmaFactorBS="ctatgagcctatgcttacttttaccctgatatCAATTGACaa
                     attatcgtagaaAGAGTTACACTAATTATAAAcattacaatgtaagaattttttttag
                     a"
                     /listShort="perR"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        868654
                     /Source="Nicolas_upshifts"
                     /id="U671"
                     /multdbtbs="SigA"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.608391608391608"
                     /psig=1
                     /xcortree=1534
                     /SigmaFactorBS="ctatgagcctatgcttacttttaccctgatatCAATTGACaa
                     attatcgtagaaAGAGTTACACTAATTATAAAcattacaatgtaagaattttttttag
                     a"
                     /listShort="perR"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             868712..869149
                     /gene="perR"
                     /locus_tag="BSU_08730"
                     /old_locus_tag="BSU08730"
                     /function="16.3: Control"
                     /experiment="publication(s) with functional evidences,
                     PMID:1580225, 16541078, 16925555, 22194458, 27935957,
                     22720735"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 1580225, 16541078,
                     16925555, 22194458, 27935957, 22720735; Product type r :
                     regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator (Fur family)"
                     /protein_id="NP_388753.1"
                     /db_xref="EnsemblGenomes-Gn:BSU08730"
                     /db_xref="EnsemblGenomes-Tr:CAB12701"
                     /db_xref="GOA:P71086"
                     /db_xref="InterPro:IPR002481"
                     /db_xref="InterPro:IPR036388"
                     /db_xref="InterPro:IPR036390"
                     /db_xref="PDB:2FE3"
                     /db_xref="PDB:2RGV"
                     /db_xref="PDB:3F8N"
                     /db_xref="SubtiList:BG12227"
                     /db_xref="UniProtKB/Swiss-Prot:P71086"
                     /translation="MAAHELKEALETLKETGVRITPQRHAILEYLVNSMAHPTADDIY
                     KALEGKFPNMSVATVYNNLRVFRESGLVKELTYGDASSRFDFVTSDHYHAICENCGKI
                     VDFHYPGLDEVEQLAAHVTGFKVSHHRLEIYGVCQECSKKENH*"
                     /label="perR CDS"
     gene            868712..869149
                     /gene="perR"
                     /locus_tag="BSU_08730"
                     /old_locus_tag="BSU08730"
                     /label="perR gene"
     downshifts      869131
                     /Source="Nicolas_upshifts"
                     /id="D437"
                     /incds=0
                     /nref=149
                     /ntot=247
                     /MaxReadThrough="3.98479"
                     /MaxDrop="7.52234"
                     /score="1.62878623"
                     /energy="-12.3"
                     /TU="U670,U671"
                     /idTUdmin="U670"
                     /TUdmin="-66"
                     /isTUend="FALSE"
                     /label="downshifts"
     CDS             complement(869184..869537)
                     /gene="ygzB"
                     /locus_tag="BSU_08740"
                     /old_locus_tag="BSU08740"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 15849754, 16850406;
                     Product type m: membrane component"
                     /codon_start=1
                     /transl_table=11
                     /product="putative membrane protein"
                     /protein_id="YP_054575.1"
                     /db_xref="EnsemblGenomes-Gn:BSU08740"
                     /db_xref="EnsemblGenomes-Tr:CAE01450"
                     /db_xref="GOA:Q7WY74"
                     /db_xref="InterPro:IPR020912"
                     /db_xref="SubtiList:BG14192"
                     /db_xref="UniProtKB/Swiss-Prot:Q7WY74"
                     /translation="MAKYSSKINKIRTFALSLVFVGFIIMYIGIFFKESVLLSSLFMI
                     LGLLSIGLSTVVYFWIGMLSTKAVRVICPGCDKETKVLGVVDMCMHCREPLTLDKGLE
                     GKEFDESYNKKKMSK*"
                     /label="ygzB CDS"
     gene            complement(869184..869537)
                     /gene="ygzB"
                     /locus_tag="BSU_08740"
                     /old_locus_tag="BSU08740"
                     /label="ygzB gene"
     downshifts      869197
                     /Source="Nicolas_upshifts"
                     /id="D438"
                     /incds=0
                     /nref=1
                     /ntot=40
                     /MaxReadThrough="2.62283"
                     /MaxDrop="4.13562"
                     /score="-4.23596421"
                     /energy="-12.5"
                     /TU="NA"
                     /idTUdmin="U670"
                     /TUdmin=0
                     /isTUend="TRUE"
                     /label="downshifts"
     downshifts      complement(869207)
                     /Source="Nicolas_upshifts"
                     /id="D439"
                     /incds=0
                     /nref=182
                     /ntot=253
                     /MaxReadThrough="4.02571"
                     /MaxDrop="6.23378"
                     /score="9.51667757"
                     /energy="-14.2"
                     /TU="NA"
                     /idTUdmin="U673"
                     /TUdmin=0
                     /isTUend="TRUE"
                     /label="downshifts"
     promotor_-35    869533..869537
                     /Source="Nicolas_upshift_promotors"
                     /id="U672"
                     /multdbtbs="-"
                     /comp="M15"
                     /sig="Sig-"
                     /pcomp="0.892107892107892"
                     /psig="0.0739260739260739"
                     /xcortree=2130
                     /SigmaFactorBS="ttaacgcaaatgttctgattttattaattttgctggagtatt
                     tcGCCATgtccatcCCCCTCTGTTTTAACtatagcacaaacccgatgggattttcttc
                     a"
                     /listShort="S302, S303, ygxA"
                     /listLong="S304, rrnD-16S"
                     /label="promotor_-35"
     promotor_-10    869545..869559
                     /Source="Nicolas_upshift_promotors"
                     /id="U672"
                     /multdbtbs="-"
                     /comp="M15"
                     /sig="Sig-"
                     /pcomp="0.892107892107892"
                     /psig="0.0739260739260739"
                     /xcortree=2130
                     /SigmaFactorBS="ttaacgcaaatgttctgattttattaattttgctggagtatt
                     tcGCCATgtccatcCCCCTCTGTTTTAACtatagcacaaacccgatgggattttcttc
                     a"
                     /listShort="S302, S303, ygxA"
                     /listLong="S304, rrnD-16S"
                     /label="promotor_-10"
     misc_feature    complement(869549..869568)
                     /Source="Nicolas_upshift_promotors"
                     /id="U673"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.949050949050949"
                     /psig="0.998001998001998"
                     /xcortree=432
                     /SigmaFactorBS="catatgtaaattccagttcaaccgaaaacatgaagaaaatcc
                     catcgggttTGTGCTATAGTTAAAACAGAgggggatggacatggcgaaatactccagc
                     a"
                     /listShort="ygzB"
                     /GFF_Attribute="listLong"
                     /label="promotor_single_box"
                     /note="Geneious type: promotor_single_box"
     S_feature       869549..869640
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_945324_945415"
                     /HighExp="Cold, C30, H2O2, Etha, dia15, G135, Paraq, C90,
                     G180, G150"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="Sig-"
                     /TUshortPSig="0.0739"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S302"
     upshifts        869549
                     /Source="Nicolas_upshifts"
                     /id="U672"
                     /multdbtbs="-"
                     /comp="M15"
                     /sig="Sig-"
                     /pcomp="0.892107892107892"
                     /psig="0.0739260739260739"
                     /xcortree=2130
                     /SigmaFactorBS="ttaacgcaaatgttctgattttattaattttgctggagtatt
                     tcGCCATgtccatcCCCCTCTGTTTTAACtatagcacaaacccgatgggattttcttc
                     a"
                     /listShort="S302, S303, ygxA"
                     /listLong="S304, rrnD-16S"
                     /label="upshifts"
     upshifts        complement(869559)
                     /Source="Nicolas_upshifts"
                     /id="U673"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.949050949050949"
                     /psig="0.998001998001998"
                     /xcortree=432
                     /SigmaFactorBS="catatgtaaattccagttcaaccgaaaacatgaagaaaatcc
                     catcgggttTGTGCTATAGTTAAAACAGAgggggatggacatggcgaaatactccagc
                     a"
                     /listShort="ygzB"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    869617..869620
                     /Source="Nicolas_upshift_promotors"
                     /id="U674"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.736263736263736"
                     /psig="0.996003996003996"
                     /xcortree=95
                     /SigmaFactorBS="tttcttcatgttttcggttgaactggaatttacatATGGaga
                     gttactgtgaaATTGTTTATAATAGTTCAATgtgtttagaaaaaaggaatttcgtttt
                     a"
                     /listShort="S303, ygxA, S304"
                     /listLong="rrnD-16S"
                     /label="promotor_-35"
     promotor_-10    869635..869654
                     /Source="Nicolas_upshift_promotors"
                     /id="U674"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.736263736263736"
                     /psig="0.996003996003996"
                     /xcortree=95
                     /SigmaFactorBS="tttcttcatgttttcggttgaactggaatttacatATGGaga
                     gttactgtgaaATTGTTTATAATAGTTCAATgtgtttagaaaaaaggaatttcgtttt
                     a"
                     /listShort="S303, ygxA, S304"
                     /listLong="rrnD-16S"
                     /label="promotor_-10"
     S_feature       869642..869744
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_945417_945519"
                     /HighExp="BMM, Cold, LBGstat, C30, Oxctl, LBGexp, Paraq,
                     G180, Lbexp, Heat"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA, Sig-"
                     /TUshortPSig="0.996, 0.0739"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S303"
     upshifts        869642
                     /Source="Nicolas_upshifts"
                     /id="U674"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.736263736263736"
                     /psig="0.996003996003996"
                     /xcortree=95
                     /SigmaFactorBS="tttcttcatgttttcggttgaactggaatttacatATGGaga
                     gttactgtgaaATTGTTTATAATAGTTCAATgtgtttagaaaaaaggaatttcgtttt
                     a"
                     /listShort="S303, ygxA, S304"
                     /listLong="rrnD-16S"
                     /label="upshifts"
     CDS             869745..870629
                     /gene="ygxA"
                     /locus_tag="BSU_08750"
                     /old_locus_tag="BSU08750"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved hypothetical protein"
                     /protein_id="NP_388755.1"
                     /db_xref="EnsemblGenomes-Gn:BSU08750"
                     /db_xref="EnsemblGenomes-Tr:CAB12703"
                     /db_xref="InterPro:IPR029348"
                     /db_xref="InterPro:IPR036388"
                     /db_xref="SubtiList:BG10951"
                     /db_xref="UniProtKB/Swiss-Prot:Q04385"
                     /translation="MENLLRPIYQERASHPNTLAVIMIERRNKTSSLTDNFDAALLVI
                     VKDADEPVFIKHYEFDHQTASLHVVTDSQIQEWILLGTNRRIIDWIVNGRVLFDRNEY
                     VVELIDRLNTFPFAERKLKIGLEYGKLIRRYVEGKAFFEANQFLDAYNAVVHALHHLA
                     RIEVIDRGFHPETTVWSQVRQMEPQVYKLYSELIESHESLEKRLELLFLANDFLIHSK
                     AEIGSAHLFEVMKEKDIWQFGELLQHHDLKHFTQDLGVMLDYLTEKGLINVCQIETKG
                     QAVYHRGYSFKKGVDSDS*"
                     /label="ygxA CDS"
     gene            869745..870629
                     /gene="ygxA"
                     /locus_tag="BSU_08750"
                     /old_locus_tag="BSU08750"
                     /label="ygxA gene"
     promotor_-35    870612..870619
                     /Source="Nicolas_upshift_promotors"
                     /id="U675"
                     /multdbtbs="SigA"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp="0.999000999001"
                     /psig=1
                     /xcortree=2619
                     /SigmaFactorBS="cgaggatattcttttaaaaaaggtGTTGACTCtgattcttga
                     ccgTGTTATATTATTAAACGTCGctgatgcgcttctgagaaaacaagctcacagcggc
                     g"
                     /listShort="S304, rrnD-16S"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    870633..870652
                     /Source="Nicolas_upshift_promotors"
                     /id="U675"
                     /multdbtbs="SigA"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp="0.999000999001"
                     /psig=1
                     /xcortree=2619
                     /SigmaFactorBS="cgaggatattcttttaaaaaaggtGTTGACTCtgattcttga
                     ccgTGTTATATTATTAAACGTCGctgatgcgcttctgagaaaacaagctcacagcggc
                     g"
                     /listShort="S304, rrnD-16S"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     S_feature       870648..870920
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_946423_946695"
                     /HighExp="LBGstat, Oxctl, C30, Paraq, GM 120, H2O2, HPh,
                     G150, LPh, Cold"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="0.106881"
                     /TUshortSig="SigA, SigA"
                     /TUshortPSig="1, 0.996"
                     /TUlongSig="Sig-"
                     /TUlongPSig="0.0739"
                     /label="S304"
     upshifts        870648
                     /Source="Nicolas_upshifts"
                     /id="U675"
                     /multdbtbs="SigA"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp="0.999000999001"
                     /psig=1
                     /xcortree=2619
                     /SigmaFactorBS="cgaggatattcttttaaaaaaggtGTTGACTCtgattcttga
                     ccgTGTTATATTATTAAACGTCGctgatgcgcttctgagaaaacaagctcacagcggc
                     g"
                     /listShort="S304, rrnD-16S"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     downshifts      complement(870681)
                     /Source="Nicolas_upshifts"
                     /id="D440"
                     /incds=0
                     /nref=1
                     /ntot=20
                     /MaxReadThrough="2.70619"
                     /MaxDrop="3.85046"
                     /score="4.43428373"
                     /energy="-7.8"
                     /TU="NA"
                     /idTUdmin="U673"
                     /TUdmin="-1474"
                     /isTUend="FALSE"
                     /label="downshifts"
     rRNA            870921..872475
                     /gene="rrnD-16S"
                     /locus_tag="BSU_rRNA_22"
                     /product="ribosomal RNA-16S"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; Product type n: RNA"
                     /function="16.2: Construct biomass (Anabolism)"
                     /label="rrnD-16S rRNA"
     gene            870921..872475
                     /gene="rrnD-16S"
                     /locus_tag="BSU_rRNA_22"
                     /label="rrnD-16S gene"
     rRNA            872643..875570
                     /gene="rrnD-23S"
                     /locus_tag="BSU_rRNA_17"
                     /product="ribosomal RNA-23S"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; Product type n: RNA"
                     /function="16.2: Construct biomass (Anabolism)"
                     /label="rrnD-23S rRNA"
     gene            872643..875570
                     /gene="rrnD-23S"
                     /locus_tag="BSU_rRNA_17"
                     /label="rrnD-23S gene"
     S_feature       875571..875656
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_951346_951431"
                     /HighExp="G135, C30, Oxctl, Paraq, LBGstat, dia0, HiTm,
                     Fru, G180, Cold"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="NA"
                     /TUshortPSig="NA"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S305"
     promotor_-35    875632..875639
                     /Source="Nicolas_upshift_promotors"
                     /id="U676"
                     /multdbtbs="SigA"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp="0.852147852147852"
                     /psig=1
                     /xcortree=2417
                     /SigmaFactorBS="ctagttttgagagaataagtttttcaaaaaaacaCTTGATTT
                     tctcaagaatacaTAGTATAATGTTAAATGTCActgaaattgtctggtgatgatggcg
                     a"
                     /listShort="rrnD-5S, trnD-Asn, trnD-Ser, trnD-Glu,
                     trnD-Val, trnD-Met, trnD-Asp, trnD-Phe, trnD-Thr,
                     trnD-Tyr, trnD-Trp, trnD-His, trnD-Gln, trnD-Gly,
                     trnD-Cys, trnD-Leu1, S306, S307, trnD-Leu2, ygzA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    875653..875672
                     /Source="Nicolas_upshift_promotors"
                     /id="U676"
                     /multdbtbs="SigA"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp="0.852147852147852"
                     /psig=1
                     /xcortree=2417
                     /SigmaFactorBS="ctagttttgagagaataagtttttcaaaaaaacaCTTGATTT
                     tctcaagaatacaTAGTATAATGTTAAATGTCActgaaattgtctggtgatgatggcg
                     a"
                     /listShort="rrnD-5S, trnD-Asn, trnD-Ser, trnD-Glu,
                     trnD-Val, trnD-Met, trnD-Asp, trnD-Phe, trnD-Thr,
                     trnD-Tyr, trnD-Trp, trnD-His, trnD-Gln, trnD-Gly,
                     trnD-Cys, trnD-Leu1, S306, S307, trnD-Leu2, ygzA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        875658
                     /Source="Nicolas_upshifts"
                     /id="U676"
                     /multdbtbs="SigA"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp="0.852147852147852"
                     /psig=1
                     /xcortree=2417
                     /SigmaFactorBS="ctagttttgagagaataagtttttcaaaaaaacaCTTGATTT
                     tctcaagaatacaTAGTATAATGTTAAATGTCActgaaattgtctggtgatgatggcg
                     a"
                     /listShort="rrnD-5S, trnD-Asn, trnD-Ser, trnD-Glu,
                     trnD-Val, trnD-Met, trnD-Asp, trnD-Phe, trnD-Thr,
                     trnD-Tyr, trnD-Trp, trnD-His, trnD-Gln, trnD-Gly,
                     trnD-Cys, trnD-Leu1, S306, S307, trnD-Leu2, ygzA"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     rRNA            875682..875797
                     /gene="rrnD-5S"
                     /locus_tag="BSU_rRNA_18"
                     /product="ribosomal RNA-5S"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; Product type n: RNA"
                     /function="16.2: Construct biomass (Anabolism)"
                     /label="rrnD-5S rRNA"
     gene            875682..875797
                     /gene="rrnD-5S"
                     /locus_tag="BSU_rRNA_18"
                     /label="rrnD-5S gene"
     tRNA            875807..875881
                     /gene="asnTA"
                     /locus_tag="BSU_tRNA_29"
                     /product="tRNA-Asn"
                     /inference="profile:tRNAscan:1.23"
                     /note="asparagine transfer RNA (GUU); Evidence 2a:
                     Function from experimental evidences in other organisms;
                     Product type n: RNA"
                     /function="16.2: Construct biomass (Anabolism)"
                     /label="asnTA tRNA"
     gene            875807..875881
                     /gene="asnTA"
                     /locus_tag="BSU_tRNA_29"
                     /label="asnTA gene"
     tRNA            875887..875978
                     /gene="trnD-Ser"
                     /locus_tag="BSU_tRNA_30"
                     /product="tRNA-Ser"
                     /inference="profile:tRNAscan:1.23"
                     /note="transfer RNA-Ser(GGA); Evidence 2a: Function from
                     experimental evidences in other organisms; Product type n:
                     RNA"
                     /function="16.2: Construct biomass (Anabolism)"
                     /label="trnD-Ser tRNA"
     gene            875887..875978
                     /gene="trnD-Ser"
                     /locus_tag="BSU_tRNA_30"
                     /label="trnD-Ser gene"
     downshifts      875974
                     /Source="Nicolas_upshifts"
                     /id="D441"
                     /incds=0
                     /nref=2
                     /ntot=20
                     /MaxReadThrough="7.64297"
                     /MaxDrop="4.37505"
                     /score="-9.7424199"
                     /energy="-11"
                     /TU="U676"
                     /idTUdmin="U677"
                     /TUdmin="-1562"
                     /isTUend="FALSE"
                     /label="downshifts"
     tRNA            876013..876084
                     /gene="trnD-Glu"
                     /locus_tag="BSU_tRNA_31"
                     /product="tRNA-Glu"
                     /inference="profile:tRNAscan:1.23"
                     /note="transfer RNA-Glu(UUC); Evidence 1a: Function from
                     experimental evidences in the studied strain; Product type
                     n: RNA"
                     /function="16.2: Construct biomass (Anabolism)"
                     /label="trnD-Glu tRNA"
     gene            876013..876084
                     /gene="trnD-Glu"
                     /locus_tag="BSU_tRNA_31"
                     /label="trnD-Glu gene"
     tRNA            876094..876169
                     /gene="trnD-Val"
                     /locus_tag="BSU_tRNA_32"
                     /product="tRNA-Val"
                     /inference="profile:tRNAscan:1.23"
                     /note="transfer RNA-Val(UAC); Evidence 1a: Function from
                     experimental evidences in the studied strain; Product type
                     n: RNA"
                     /function="16.2: Construct biomass (Anabolism)"
                     /label="trnD-Val tRNA"
     gene            876094..876169
                     /gene="trnD-Val"
                     /locus_tag="BSU_tRNA_32"
                     /label="trnD-Val gene"
     tRNA            876179..876255
                     /gene="trnD-Met"
                     /locus_tag="BSU_tRNA_33"
                     /product="tRNA-Met"
                     /inference="profile:tRNAscan:1.23"
                     /note="transfer RNA-Met(CAU); Evidence 2a: Function from
                     experimental evidences in other organisms; Product type n:
                     RNA"
                     /function="16.2: Construct biomass (Anabolism)"
                     /label="trnD-Met tRNA"
     gene            876179..876255
                     /gene="trnD-Met"
                     /locus_tag="BSU_tRNA_33"
                     /label="trnD-Met gene"
     tRNA            876267..876343
                     /gene="trnD-Asp"
                     /locus_tag="BSU_tRNA_34"
                     /product="tRNA-Asp"
                     /inference="profile:tRNAscan:1.23"
                     /note="transfer RNA-Asp(GUC); Evidence 1a: Function from
                     experimental evidences in the studied strain; Product type
                     n: RNA"
                     /function="16.2: Construct biomass (Anabolism)"
                     /label="trnD-Asp tRNA"
     gene            876267..876343
                     /gene="trnD-Asp"
                     /locus_tag="BSU_tRNA_34"
                     /label="trnD-Asp gene"
     tRNA            876356..876431
                     /gene="trnD-Phe"
                     /locus_tag="BSU_tRNA_35"
                     /product="tRNA-Phe"
                     /inference="profile:tRNAscan:1.23"
                     /note="transfer RNA-Phe(GAA); Evidence 2a: Function from
                     experimental evidences in other organisms; Product type n:
                     RNA"
                     /function="16.2: Construct biomass (Anabolism)"
                     /label="trnD-Phe tRNA"
     gene            876356..876431
                     /gene="trnD-Phe"
                     /locus_tag="BSU_tRNA_35"
                     /label="trnD-Phe gene"
     tRNA            876437..876509
                     /gene="trnD-Thr"
                     /locus_tag="BSU_tRNA_36"
                     /product="tRNA-Thr"
                     /inference="profile:tRNAscan:1.23"
                     /note="transfer RNA-Thr(UGU); Evidence 2a: Function from
                     experimental evidences in other organisms; Product type n:
                     RNA"
                     /function="16.2: Construct biomass (Anabolism)"
                     /label="trnD-Thr tRNA"
     gene            876437..876509
                     /gene="trnD-Thr"
                     /locus_tag="BSU_tRNA_36"
                     /label="trnD-Thr gene"
     tRNA            876532..876616
                     /gene="trnD-Tyr"
                     /locus_tag="BSU_tRNA_37"
                     /product="tRNA-Tyr"
                     /inference="profile:tRNAscan:1.23"
                     /note="transfer RNA-Tyr(GUA); Evidence 1a: Function from
                     experimental evidences in the studied strain; Product type
                     n: RNA"
                     /function="16.2: Construct biomass (Anabolism)"
                     /label="trnD-Tyr tRNA"
     gene            876532..876616
                     /gene="trnD-Tyr"
                     /locus_tag="BSU_tRNA_37"
                     /label="trnD-Tyr gene"
     tRNA            876622..876695
                     /gene="trnD-Trp"
                     /locus_tag="BSU_tRNA_38"
                     /product="tRNA-Trp"
                     /inference="profile:tRNAscan:1.23"
                     /note="transfer RNA-Trp(CCA); Evidence 1a: Function from
                     experimental evidences in the studied strain; Product type
                     n: RNA"
                     /function="16.2: Construct biomass (Anabolism)"
                     /label="trnD-Trp tRNA"
     gene            876622..876695
                     /gene="trnD-Trp"
                     /locus_tag="BSU_tRNA_38"
                     /label="trnD-Trp gene"
     tRNA            876720..876795
                     /gene="trnD-His"
                     /locus_tag="BSU_tRNA_39"
                     /product="tRNA-His"
                     /inference="profile:tRNAscan:1.23"
                     /note="transfer RNA-His(GUG); Evidence 2a: Function from
                     experimental evidences in other organisms; Product type n:
                     RNA"
                     /function="16.2: Construct biomass (Anabolism)"
                     /label="trnD-His tRNA"
     gene            876720..876795
                     /gene="trnD-His"
                     /locus_tag="BSU_tRNA_39"
                     /label="trnD-His gene"
     tRNA            876805..876876
                     /gene="trnD-Gln"
                     /locus_tag="BSU_tRNA_40"
                     /product="tRNA-Gln"
                     /inference="profile:tRNAscan:1.23"
                     /note="transfer RNA-Gln(UUG); Evidence 2a: Function from
                     experimental evidences in other organisms; Product type n:
                     RNA"
                     /function="16.2: Construct biomass (Anabolism)"
                     /label="trnD-Gln tRNA"
     gene            876805..876876
                     /gene="trnD-Gln"
                     /locus_tag="BSU_tRNA_40"
                     /label="trnD-Gln gene"
     tRNA            876926..877000
                     /gene="glyTB"
                     /locus_tag="BSU_tRNA_41"
                     /product="tRNA-Gly"
                     /inference="profile:tRNAscan:1.23"
                     /note="glycine transfer RNA (GCC); Evidence 1a: Function
                     from experimental evidences in the studied strain; Product
                     type n: RNA"
                     /function="16.2: Construct biomass (Anabolism)"
                     /label="glyTB tRNA"
     gene            876926..877000
                     /gene="glyTB"
                     /locus_tag="BSU_tRNA_41"
                     /label="glyTB gene"
     tRNA            877006..877076
                     /gene="cysTA"
                     /locus_tag="BSU_tRNA_42"
                     /product="tRNA-Cys"
                     /inference="profile:tRNAscan:1.23"
                     /note="cysteine tRNA (GCA); Evidence 2a: Function from
                     experimental evidences in other organisms; Product type n:
                     RNA"
                     /function="16.2: Construct biomass (Anabolism)"
                     /label="cysTA tRNA"
     gene            877006..877076
                     /gene="cysTA"
                     /locus_tag="BSU_tRNA_42"
                     /label="cysTA gene"
     tRNA            877084..877172
                     /gene="leuTA"
                     /locus_tag="BSU_tRNA_43"
                     /product="tRNA-Leu"
                     /inference="profile:tRNAscan:1.23"
                     /note="leucine RNA (UAA); Evidence 2a: Function from
                     experimental evidences in other organisms; Product type n:
                     RNA"
                     /function="16.2: Construct biomass (Anabolism)"
                     /label="leuTA tRNA"
     gene            877084..877172
                     /gene="leuTA"
                     /locus_tag="BSU_tRNA_43"
                     /label="leuTA gene"
     S_feature       877173..877249
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_952948_953024"
                     /HighExp="Paraq, C30, Oxctl, G180, G135, Heat, BMM,
                     LBGexp, dia15, Cold"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig=1
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S306"
     downshifts      877206
                     /Source="Nicolas_upshifts"
                     /id="D442"
                     /incds=0
                     /nref=18
                     /ntot=231
                     /MaxReadThrough="5.36857"
                     /MaxDrop="5.05259"
                     /score="16.6649124"
                     /energy="-8.9"
                     /TU="U676"
                     /idTUdmin="U677"
                     /TUdmin="-330"
                     /isTUend="FALSE"
                     /label="downshifts"
     S_feature       877251..877419
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_953026_953194"
                     /HighExp="Heat, Paraq, BMM, Oxctl, H2O2, Cold, G180, Pyr,
                     C30, Glu"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig=1
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S307"
     promotor_-35    877376..877383
                     /Source="Nicolas_upshift_promotors"
                     /id="U677"
                     /multdbtbs="-"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp="0.927072927072927"
                     /psig="0.998001998001998"
                     /xcortree=687
                     /SigmaFactorBS="acttttttgaaatacGTTGACACtttatgagatccaTGATAT
                     ATTTATATTCGTCGgttagatacgacgtaaaacttgccggtgtggcggaattggcaga
                     c"
                     /listShort="trnD-Leu2"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     downshifts      877382
                     /Source="Nicolas_upshifts"
                     /id="D443"
                     /incds=0
                     /nref=1
                     /ntot=14
                     /MaxReadThrough="3.84674"
                     /MaxDrop="3.439"
                     /score="35.1424037"
                     /energy="-12.4"
                     /TU="U676"
                     /idTUdmin="U677"
                     /TUdmin="-154"
                     /isTUend="FALSE"
                     /label="downshifts"
     promotor_-10    877397..877416
                     /Source="Nicolas_upshift_promotors"
                     /id="U677"
                     /multdbtbs="-"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp="0.927072927072927"
                     /psig="0.998001998001998"
                     /xcortree=687
                     /SigmaFactorBS="acttttttgaaatacGTTGACACtttatgagatccaTGATAT
                     ATTTATATTCGTCGgttagatacgacgtaaaacttgccggtgtggcggaattggcaga
                     c"
                     /listShort="trnD-Leu2"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        877421
                     /Source="Nicolas_upshifts"
                     /id="U677"
                     /multdbtbs="-"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp="0.927072927072927"
                     /psig="0.998001998001998"
                     /xcortree=687
                     /SigmaFactorBS="acttttttgaaatacGTTGACACtttatgagatccaTGATAT
                     ATTTATATTCGTCGgttagatacgacgtaaaacttgccggtgtggcggaattggcaga
                     c"
                     /listShort="trnD-Leu2"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     tRNA            877438..877519
                     /gene="leuTB"
                     /locus_tag="BSU_tRNA_44"
                     /product="tRNA-Leu"
                     /inference="profile:tRNAscan:1.23"
                     /note="leucine tRNA(CAA); Evidence 2a: Function from
                     experimental evidences in other organisms; Product type n:
                     RNA"
                     /function="16.2: Construct biomass (Anabolism)"
                     /label="leuTB tRNA"
     gene            877438..877519
                     /gene="leuTB"
                     /locus_tag="BSU_tRNA_44"
                     /label="leuTB gene"
     promotor_-10    complement(877455..877472)
                     /Source="Nicolas_upshift_promotors"
                     /id="U678"
                     /multdbtbs="-"
                     /comp="M20"
                     /sig="Sig-"
                     /pcomp="0.925074925074925"
                     /psig="0.012987012987013"
                     /xcortree=395
                     /SigmaFactorBS="accggtggtcggggtcgaacCGACACtccagaaggaacacga
                     ttttGAGTCGTGCGCGTCTGCCaattccgccacaccggcaagttttacgtcgtatcta
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(877458)
                     /Source="Nicolas_upshifts"
                     /id="U678"
                     /multdbtbs="-"
                     /comp="M20"
                     /sig="Sig-"
                     /pcomp="0.925074925074925"
                     /psig="0.012987012987013"
                     /xcortree=395
                     /SigmaFactorBS="accggtggtcggggtcgaacCGACACtccagaaggaacacga
                     ttttGAGTCGTGCGCGTCTGCCaattccgccacaccggcaagttttacgtcgtatcta
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(877493..877498)
                     /Source="Nicolas_upshift_promotors"
                     /id="U678"
                     /multdbtbs="-"
                     /comp="M20"
                     /sig="Sig-"
                     /pcomp="0.925074925074925"
                     /psig="0.012987012987013"
                     /xcortree=395
                     /SigmaFactorBS="accggtggtcggggtcgaacCGACACtccagaaggaacacga
                     ttttGAGTCGTGCGCGTCTGCCaattccgccacaccggcaagttttacgtcgtatcta
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     downshifts      complement(877528)
                     /Source="Nicolas_upshifts"
                     /id="D444"
                     /incds=0
                     /nref=5
                     /ntot=151
                     /MaxReadThrough="1.64364"
                     /MaxDrop="6.28675"
                     /score="7.71223568"
                     /energy="-12.4"
                     /TU="NA"
                     /idTUdmin="U679"
                     /TUdmin=18
                     /isTUend="TRUE"
                     /label="downshifts"
     CDS             complement(877598..878374)
                     /gene="spo0M"
                     /locus_tag="BSU_08760"
                     /old_locus_tag="BSU08760"
                     /function="16.3: Control"
                     /experiment="publication(s) with functional evidences,
                     PMID:9795118, 22142536, 26625291, 28234965"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 9795118, 22142536,
                     26625291, 28234965; Product type r: regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="protein involved in the control of the cell
                     cycle as a function of the environment"
                     /protein_id="NP_388756.2"
                     /db_xref="EnsemblGenomes-Gn:BSU08760"
                     /db_xref="EnsemblGenomes-Tr:CAB12704"
                     /db_xref="GOA:P71088"
                     /db_xref="InterPro:IPR009776"
                     /db_xref="InterPro:IPR014756"
                     /db_xref="PDB:5CL2"
                     /db_xref="SubtiList:BG12229"
                     /db_xref="UniProtKB/Swiss-Prot:P71088"
                     /translation="MSFFKKLAASAGIGAAKVDTILEKDAYFPGEEVQGTVHVKGGKI
                     AQDIRYIDLQLSTRYVIVKDDEEHRKYATIHSFRVTGSFTIQPGEEHQFPFTFTLPLD
                     TPITVGKVEVAVVTDLDIQGGIDKSDHDRIFVEAHPWIENVLEAIENLGFRLNEADCE
                     QAPYFQRRLPFVQEFEFVPTSGYYRQMLDELELIFLLDEDGLEIIFEVDRRARGLRGW
                     LEEMYNDGEQLVRVRFSQSELEDTEELEEVLEEILDQYAE*"
                     /label="spo0M CDS"
     gene            complement(877598..878374)
                     /gene="spo0M"
                     /locus_tag="BSU_08760"
                     /old_locus_tag="BSU08760"
                     /label="spo0M gene"
     downshifts      complement(877612)
                     /Source="Nicolas_upshifts"
                     /id="D445"
                     /incds=0
                     /nref=9
                     /ntot=131
                     /MaxReadThrough="6.06864"
                     /MaxDrop="6.58787"
                     /score="6.75662782"
                     /energy="-7"
                     /TU="U679"
                     /idTUdmin="U679"
                     /TUdmin="-66"
                     /isTUend="FALSE"
                     /label="downshifts"
     promotor_-10    complement(878401..878416)
                     /Source="Nicolas_upshift_promotors"
                     /id="U679"
                     /multdbtbs="SigH"
                     /comp="M9"
                     /sig="SigWXY"
                     /pcomp="0.999000999001"
                     /psig="0.999000999001"
                     /xcortree=1665
                     /SigmaFactorBS="tgtccctaggccgagacgaataataggaaaaaagtatgaatc
                     aaaCGAATCTTTTttcctccttcttACGTATATCTGTTGAGaaaaaagaaaaagggga
                     a"
                     /listShort="spo0M"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(878423)
                     /Source="Nicolas_upshifts"
                     /id="U679"
                     /multdbtbs="SigH"
                     /comp="M9"
                     /sig="SigWXY"
                     /pcomp="0.999000999001"
                     /psig="0.999000999001"
                     /xcortree=1665
                     /SigmaFactorBS="tgtccctaggccgagacgaataataggaaaaaagtatgaatc
                     aaaCGAATCTTTTttcctccttcttACGTATATCTGTTGAGaaaaaagaaaaagggga
                     a"
                     /listShort="spo0M"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(878429..878438)
                     /Source="Nicolas_upshift_promotors"
                     /id="U679"
                     /multdbtbs="SigH"
                     /comp="M9"
                     /sig="SigWXY"
                     /pcomp="0.999000999001"
                     /psig="0.999000999001"
                     /xcortree=1665
                     /SigmaFactorBS="tgtccctaggccgagacgaataataggaaaaaagtatgaatc
                     aaaCGAATCTTTTttcctccttcttACGTATATCTGTTGAGaaaaaagaaaaagggga
                     a"
                     /listShort="spo0M"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-35    878458..878464
                     /Source="Nicolas_upshift_promotors"
                     /id="U680"
                     /multdbtbs="-"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp="0.995004995004995"
                     /psig="0.995004995004995"
                     /xcortree=873
                     /SigmaFactorBS="ggaggaaaaaagattcgtttgattcatacttttttcCTATTA
                     TtcgtctcggcctagGGACAGACTAAGaataatattgaaaataaaggagtcgatggaa
                     g"
                     /listShort="ygzA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    878479..878490
                     /Source="Nicolas_upshift_promotors"
                     /id="U680"
                     /multdbtbs="-"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp="0.995004995004995"
                     /psig="0.995004995004995"
                     /xcortree=873
                     /SigmaFactorBS="ggaggaaaaaagattcgtttgattcatacttttttcCTATTA
                     TtcgtctcggcctagGGACAGACTAAGaataatattgaaaataaaggagtcgatggaa
                     g"
                     /listShort="ygzA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        878482
                     /Source="Nicolas_upshifts"
                     /id="U680"
                     /multdbtbs="-"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp="0.995004995004995"
                     /psig="0.995004995004995"
                     /xcortree=873
                     /SigmaFactorBS="ggaggaaaaaagattcgtttgattcatacttttttcCTATTA
                     TtcgtctcggcctagGGACAGACTAAGaataatattgaaaataaaggagtcgatggaa
                     g"
                     /listShort="ygzA"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             878516..878719
                     /gene="ygzA"
                     /locus_tag="BSU_08770"
                     /old_locus_tag="BSU08770"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved protein of unknown function"
                     /protein_id="NP_388757.2"
                     /db_xref="EnsemblGenomes-Gn:BSU08770"
                     /db_xref="EnsemblGenomes-Tr:CAB12705"
                     /db_xref="SubtiList:BG12981"
                     /db_xref="UniProtKB/Swiss-Prot:O31586"
                     /translation="MEVNKESLVADELHRMFLAGELQITVEEDINNISERLRNGDLSL
                     DRLSGEDVFIKETVNEALRRVEQ*"
                     /label="ygzA CDS"
     gene            878516..878719
                     /gene="ygzA"
                     /locus_tag="BSU_08770"
                     /old_locus_tag="BSU08770"
                     /label="ygzA gene"
     downshifts      878702
                     /Source="Nicolas_upshifts"
                     /id="D446"
                     /incds=0
                     /nref=22
                     /ntot=97
                     /MaxReadThrough="1.47004"
                     /MaxDrop="5.47861"
                     /score="15.4081475"
                     /energy="-18.2"
                     /TU="NA"
                     /idTUdmin="U676"
                     /TUdmin=0
                     /isTUend="TRUE"
                     /label="downshifts"
     downshifts      complement(878778)
                     /Source="Nicolas_upshifts"
                     /id="D447"
                     /incds=0
                     /nref=10
                     /ntot=35
                     /MaxReadThrough="1.31339"
                     /MaxDrop="4.8918"
                     /score="26.0684119"
                     /energy="-18.2"
                     /TU="NA"
                     /idTUdmin="U681"
                     /TUdmin=0
                     /isTUend="TRUE"
                     /label="downshifts"
     CDS             complement(878804..879076)
                     /gene="ygzC"
                     /locus_tag="BSU_08779"
                     /old_locus_tag="BSU08779"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; Product type s: structure"
                     /codon_start=1
                     /transl_table=11
                     /product="putative spore coat protein"
                     /protein_id="YP_003097696.1"
                     /db_xref="EnsemblGenomes-Gn:BSU08779"
                     /db_xref="EnsemblGenomes-Tr:CAX52583"
                     /db_xref="GOA:C0H3X8"
                     /db_xref="InterPro:IPR012347"
                     /db_xref="InterPro:IPR012851"
                     /db_xref="UniProtKB/Swiss-Prot:C0H3X8"
                     /translation="MYRSKKQSQILSYQELLKKQRRWFPIEQSLCPKDILDLLTTIKT
                     SINKYTVATTATENPHIRRALHDQLDTAVYLHDELSDLLLEKGWLG*"
                     /label="ygzC CDS"
     gene            complement(878804..879076)
                     /gene="ygzC"
                     /locus_tag="BSU_08779"
                     /old_locus_tag="BSU08779"
                     /label="ygzC gene"
     promotor_-10    complement(879035..879053)
                     /Source="Nicolas_upshift_promotors"
                     /id="U681"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.94005994005994"
                     /psig="0.94005994005994"
                     /xcortree=1185
                     /SigmaFactorBS="caaaatttgttgcttattatagcatttTGTATAgaagcaaga
                     aacaaagTCAAATACTTTCTTATCAGgagctgctaaaaaaacaaaggaggtggtttcc
                     c"
                     /listShort="ygzC"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(879042)
                     /Source="Nicolas_upshifts"
                     /id="U681"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.94005994005994"
                     /psig="0.94005994005994"
                     /xcortree=1185
                     /SigmaFactorBS="caaaatttgttgcttattatagcatttTGTATAgaagcaaga
                     aacaaagTCAAATACTTTCTTATCAGgagctgctaaaaaaacaaaggaggtggtttcc
                     c"
                     /listShort="ygzC"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    879057..879064
                     /Source="Nicolas_upshift_promotors"
                     /id="U682"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.478521478521479"
                     /psig=1
                     /xcortree=2885
                     /SigmaFactorBS="ttagcagctcctgataagaaagtatttgacttTGTTTCTTgc
                     ttctatacaaAATGCTATAATAAGCAACAAattttgttggggggtgtgatgatgaagc
                     a"
                     /listShort="ygaJ"
                     /listLong="NA, thiC, S308"
                     /label="promotor_-35"
     promotor_-35    complement(879070..879075)
                     /Source="Nicolas_upshift_promotors"
                     /id="U681"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.94005994005994"
                     /psig="0.94005994005994"
                     /xcortree=1185
                     /SigmaFactorBS="caaaatttgttgcttattatagcatttTGTATAgaagcaaga
                     aacaaagTCAAATACTTTCTTATCAGgagctgctaaaaaaacaaaggaggtggtttcc
                     c"
                     /listShort="ygzC"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    879077..879096
                     /Source="Nicolas_upshift_promotors"
                     /id="U682"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.478521478521479"
                     /psig=1
                     /xcortree=2885
                     /SigmaFactorBS="ttagcagctcctgataagaaagtatttgacttTGTTTCTTgc
                     ttctatacaaAATGCTATAATAAGCAACAAattttgttggggggtgtgatgatgaagc
                     a"
                     /listShort="ygaJ"
                     /listLong="NA, thiC, S308"
                     /label="promotor_-10"
     upshifts        879085
                     /Source="Nicolas_upshifts"
                     /id="U682"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.478521478521479"
                     /psig=1
                     /xcortree=2885
                     /SigmaFactorBS="ttagcagctcctgataagaaagtatttgacttTGTTTCTTgc
                     ttctatacaaAATGCTATAATAAGCAACAAattttgttggggggtgtgatgatgaagc
                     a"
                     /listShort="ygaJ"
                     /listLong="NA, thiC, S308"
                     /label="upshifts"
     CDS             879118..879810
                     /gene="ygaJ"
                     /locus_tag="BSU_08780"
                     /old_locus_tag="BSU08780"
                     /EC_number="3.4.21.-"
                     /function="16.11: Scavenge (Catabolism)"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative peptidase"
                     /protein_id="NP_388758.2"
                     /db_xref="EnsemblGenomes-Gn:BSU08780"
                     /db_xref="EnsemblGenomes-Tr:CAB12706"
                     /db_xref="GOA:P71089"
                     /db_xref="InterPro:IPR005320"
                     /db_xref="InterPro:IPR029062"
                     /db_xref="SubtiList:BG12230"
                     /db_xref="UniProtKB/Swiss-Prot:P71089"
                     /translation="MKQIIAMGGGGFSMEPDNLSLDQYILNQSKREQPRICFLPTASG
                     DSQNYIQRFYHAFQTLDCVPSHLSLFKPPSSDLVSFVMEMDVIYVGGGNTRNLLVLWK
                     EWGLDHILREAWKNGVVVAGISAGAICWFEEGVTDSAGPLTSLKSLGFLQGSFCPHYD
                     GEKDRRPAYHQLISNKFLCSGYAADDGAALHFINDQLFQTVSSRSGAKAYRVMMAEHE
                     IAEIPLPVKYLG*"
                     /label="ygaJ CDS"
     gene            879118..879810
                     /gene="ygaJ"
                     /locus_tag="BSU_08780"
                     /old_locus_tag="BSU08780"
                     /label="ygaJ gene"
     promotor_-35    879839..879843
                     /Source="Nicolas_upshift_promotors"
                     /id="U684"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.616383616383616"
                     /psig="0.946053946053946"
                     /xcortree=2883
                     /SigmaFactorBS="tctatattcctcTTTTTttcagattgatttTATGATAAGATG
                     AGTGCGAAatcaatagttactgggggtgcccgctttcgggctgagagagaaggcaagc
                     t"
                     /listShort="NA, thiC, S308"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    complement(879842..879861)
                     /Source="Nicolas_upshift_promotors"
                     /id="U683"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.863136863136863"
                     /psig="0.997002997002997"
                     /xcortree=2976
                     /SigmaFactorBS="tctcagcccgaaagcgggcacccccagtaacTATTGATTtcg
                     cactcatcttaTCATAAAATCAATCTGAAAAaaagaggaatatagataatattcagcc
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(879854)
                     /Source="Nicolas_upshifts"
                     /id="U683"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.863136863136863"
                     /psig="0.997002997002997"
                     /xcortree=2976
                     /SigmaFactorBS="tctcagcccgaaagcgggcacccccagtaacTATTGATTtcg
                     cactcatcttaTCATAAAATCAATCTGAAAAaaagaggaatatagataatattcagcc
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-10    879857..879876
                     /Source="Nicolas_upshift_promotors"
                     /id="U684"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.616383616383616"
                     /psig="0.946053946053946"
                     /xcortree=2883
                     /SigmaFactorBS="tctatattcctcTTTTTttcagattgatttTATGATAAGATG
                     AGTGCGAAatcaatagttactgggggtgcccgctttcgggctgagagagaaggcaagc
                     t"
                     /listShort="NA, thiC, S308"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     promotor_-35    complement(879876..879883)
                     /Source="Nicolas_upshift_promotors"
                     /id="U683"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.863136863136863"
                     /psig="0.997002997002997"
                     /xcortree=2976
                     /SigmaFactorBS="tctcagcccgaaagcgggcacccccagtaacTATTGATTtcg
                     cactcatcttaTCATAAAATCAATCTGAAAAaaagaggaatatagataatattcagcc
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     misc_RNA        879880..879987
                     /gene="tswD"
                     /locus_tag="BSU_misc_RNA_11"
                     /product="thiamine pyrophosphate riboswitch"
                     /note="Evidence 1c: Function from experimental evidences
                     in the studied genus; PubMedId: 11470904, 12410317,
                     15862294, 16728979, 16962976, 17307816, 18179415,
                     18776013; Product type n: RNA"
                     /function="16.3: Control"
                     /label="tswD RNA"
     gene            879880..879987
                     /gene="tswD"
                     /locus_tag="BSU_misc_RNA_11"
                     /label="tswD gene"
     upshifts        879887
                     /Source="Nicolas_upshifts"
                     /id="U684"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.616383616383616"
                     /psig="0.946053946053946"
                     /xcortree=2883
                     /SigmaFactorBS="tctatattcctcTTTTTttcagattgatttTATGATAAGATG
                     AGTGCGAAatcaatagttactgggggtgcccgctttcgggctgagagagaaggcaagc
                     t"
                     /listShort="NA, thiC, S308"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     downshifts      880018
                     /Source="Nicolas_upshifts"
                     /id="D448"
                     /incds=0
                     /nref=13
                     /ntot=48
                     /MaxReadThrough="8.09735"
                     /MaxDrop="5.74046"
                     /score="17.5556194"
                     /energy="-12.4"
                     /TU="U684"
                     /idTUdmin="U682"
                     /TUdmin=152
                     /isTUend="FALSE"
                     /label="downshifts"
     CDS             880120..881892
                     /gene="thiC"
                     /locus_tag="BSU_08790"
                     /old_locus_tag="BSU08790"
                     /EC_number="4.1.99.17"
                     /function="16.2: Construct biomass (Anabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:8432721, 9370266, 10382260, 16291685, 26443755"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 8432721, 9370266,
                     10382260, 16291685, 26443755; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphomethylpyrimidine synthase"
                     /protein_id="NP_388759.2"
                     /db_xref="EnsemblGenomes-Gn:BSU08790"
                     /db_xref="EnsemblGenomes-Tr:CAB12707"
                     /db_xref="GOA:P45740"
                     /db_xref="InterPro:IPR002817"
                     /db_xref="InterPro:IPR025747"
                     /db_xref="SubtiList:BG11246"
                     /db_xref="UniProtKB/Swiss-Prot:P45740"
                     /translation="MQNNSVQQANISIMSSFSGSKKVYVEGSSSDIQVPMREIALSPT
                     TGSFGEEENAPVRVYDTSGPYTDPEVTINIQEGLKPLRQKWITERGDVEEYEGRAIKP
                     EDNGYKKAKPNVSYPGLKRKPLRAKAGQNVTQMHYAKKGIITPEMEFIAIREHVSPEF
                     VRDEVASGRAIIPSNINHPESEPMIIGRNFHVKINANIGNSAVTSSIEEEVEKMTWAI
                     RWGADTMMDLSTGKDIHTTREWIIRNCPVPVGTVPIYQALEKVNGVAEDLTWEIYRDT
                     LIEQAEQGVDYFTIHAGVLLRYVPLTAKRTTGIVSRGGAIMAQWCLAHHQESFLYTHF
                     EEICEIMKMYDIAFSLGDGLRPGSIADANDEAQFAELETLGELTQIAWKHDVQVMIEG
                     PGHVPMHKIKENVDKQMDICKEAPFYTLGPLTTDIAPGYDHITSAIGAAMIGWYGTAM
                     LCYVTPKEHLGLPNRDDVREGVITYKIAAHAADLAKGHPGAQIRDDALSKARFEFRWR
                     DQFNLSLDPERALEYHDETLPAEGAKTAHFCSMCGPKFCSMRISQDIRDYAKKNDLSE
                     AEAINKGLKEKAKEFVDTGSNLYQ*"
                     /label="thiC CDS"
     gene            880120..881892
                     /gene="thiC"
                     /locus_tag="BSU_08790"
                     /old_locus_tag="BSU08790"
                     /label="thiC gene"
     downshifts      881868
                     /Source="Nicolas_upshifts"
                     /id="D449"
                     /incds=0
                     /nref=166
                     /ntot=257
                     /MaxReadThrough="5.77069"
                     /MaxDrop="5.3684"
                     /score="25.2366359"
                     /energy="-15.3"
                     /TU="U684"
                     /idTUdmin="U684"
                     /TUdmin="-946"
                     /isTUend="FALSE"
                     /label="downshifts"
     S_feature       881913..882838
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_957688_958613"
                     /HighExp="HiOs, GM-0.1, GM 45, GM 60, GM-0.2, BMM, MG 90,
                     T-5.40H, MG 15, MG 25"
                     /AntisenseName="ygaK"
                     /AntisenseCor="-9.7288827054566707E-2"
                     /AntisenseRegPval="-1"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.946"
                     /TUlongSig="SigA"
                     /TUlongPSig=1
                     /label="S308"
     CDS             complement(881930..883285)
                     /gene="ygaK"
                     /locus_tag="BSU_08800"
                     /old_locus_tag="BSU08800"
                     /EC_number="1.21.-.-"
                     /function="16.11: Scavenge (Catabolism)"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 8972604; Product type
                     e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative FAD-dependent oxido-reductase"
                     /protein_id="NP_388760.2"
                     /db_xref="EnsemblGenomes-Gn:BSU08800"
                     /db_xref="EnsemblGenomes-Tr:CAB12708"
                     /db_xref="GOA:Q796Y5"
                     /db_xref="InterPro:IPR006094"
                     /db_xref="InterPro:IPR012951"
                     /db_xref="InterPro:IPR016166"
                     /db_xref="InterPro:IPR016167"
                     /db_xref="InterPro:IPR016169"
                     /db_xref="InterPro:IPR036318"
                     /db_xref="SubtiList:BG12231"
                     /db_xref="UniProtKB/Swiss-Prot:Q796Y5"
                     /translation="MEKTKLTGRIVTRDDPDYNEARTNINLSLERYPDIIVFCQNKQD
                     ALNALKWARENRVPFRIRGGRHSYENFSLLNNGLVIDLSEMKKITVNQDKKLAYIEAG
                     AELGEVYRTLWQYGLTLPAGTIANVGLTGLTLGGGIGLLTRAAGLTCDSLVQLEMIVA
                     DEKEGADLITVSCSNHPDLFWASQGGGGGNFGIVTSMTFKAVPISQVSIFSITWGWDD
                     FEEVYNTWQNWAPYTDDRLTSSIEFWPKEVNRIEALGQFVGPKTELKKLLKPLLKAGS
                     PTSGMVKTTPFIEAVTFFNSPGGNQPQKMKRSGSFIEKPLSERAISTIKHFLEHAPNQ
                     NASVWQQALGGAAGRVAPDQTAFYYRDAIIAQEYLTNWTSPGEKRQNVRWIEGLRTSL
                     SKETMGDYVNWPDIEIRNWPRTYYGENVERLRRVKTTYDPENVFRFEQSIPPLRRSLF
                     F*"
                     /label="ygaK CDS"
     gene            complement(881930..883285)
                     /gene="ygaK"
                     /locus_tag="BSU_08800"
                     /old_locus_tag="BSU08800"
                     /label="ygaK gene"
     promotor_-10    complement(883313..883332)
                     /Source="Nicolas_upshift_promotors"
                     /id="U685"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp=1
                     /psig=1
                     /xcortree=1414
                     /SigmaFactorBS="tgttgacactgtatcagattgcatccccgctttttCCTTATA
                     CACtcttttcccctgaCGCATAAGCTAGAGAAACTAgaatacgagagaaagagatgtg
                     g"
                     /listShort="ygaK"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(883330)
                     /Source="Nicolas_upshifts"
                     /id="U685"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp=1
                     /psig=1
                     /xcortree=1414
                     /SigmaFactorBS="tgttgacactgtatcagattgcatccccgctttttCCTTATA
                     CACtcttttcccctgaCGCATAAGCTAGAGAAACTAgaatacgagagaaagagatgtg
                     g"
                     /listShort="ygaK"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(883346..883355)
                     /Source="Nicolas_upshift_promotors"
                     /id="U685"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp=1
                     /psig=1
                     /xcortree=1414
                     /SigmaFactorBS="tgttgacactgtatcagattgcatccccgctttttCCTTATA
                     CACtcttttcccctgaCGCATAAGCTAGAGAAACTAgaatacgagagaaagagatgtg
                     g"
                     /listShort="ygaK"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-35    883403..883409
                     /Source="Nicolas_upshift_promotors"
                     /id="U686"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.48951048951049"
                     /psig="0.954045954045954"
                     /xcortree=1737
                     /SigmaFactorBS="cctcaaaaaatAGTTGACaggtcggtattgtaTGAATTAACA
                     TGGTCAGTACaaatttttcaaatttatcgcgctgatcggaacaccgaaggctcttatc
                     g"
                     /listShort="senS"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    883424..883443
                     /Source="Nicolas_upshift_promotors"
                     /id="U686"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.48951048951049"
                     /psig="0.954045954045954"
                     /xcortree=1737
                     /SigmaFactorBS="cctcaaaaaatAGTTGACaggtcggtattgtaTGAATTAACA
                     TGGTCAGTACaaatttttcaaatttatcgcgctgatcggaacaccgaaggctcttatc
                     g"
                     /listShort="senS"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        883452
                     /Source="Nicolas_upshifts"
                     /id="U686"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.48951048951049"
                     /psig="0.954045954045954"
                     /xcortree=1737
                     /SigmaFactorBS="cctcaaaaaatAGTTGACaggtcggtattgtaTGAATTAACA
                     TGGTCAGTACaaatttttcaaatttatcgcgctgatcggaacaccgaaggctcttatc
                     g"
                     /listShort="senS"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             883536..883733
                     /gene="senS"
                     /locus_tag="BSU_08810"
                     /old_locus_tag="BSU08810"
                     /function="16.3: Control"
                     /experiment="publication(s) with functional evidences,
                     PMID:1479343, 2108127, 8323536, 16321961"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 1479343, 2108127,
                     8323536, 16321961; Product type r: regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator (repressor of ScoC)"
                     /protein_id="NP_388761.2"
                     /db_xref="EnsemblGenomes-Gn:BSU08810"
                     /db_xref="EnsemblGenomes-Tr:CAB12709"
                     /db_xref="GOA:P21344"
                     /db_xref="InterPro:IPR025004"
                     /db_xref="SubtiList:BG10747"
                     /db_xref="UniProtKB/Swiss-Prot:P21344"
                     /translation="MGVKKEKGRKRFRKRKTYGNQILPLELLIEKNKREIINSAELME
                     EIYMKIDEKHTQCVTKYKKTR*"
                     /label="senS CDS"
     gene            883536..883733
                     /gene="senS"
                     /locus_tag="BSU_08810"
                     /old_locus_tag="BSU08810"
                     /label="senS gene"
     CDS             complement(883760..885211)
                     /gene="katA"
                     /locus_tag="BSU_08820"
                     /old_locus_tag="BSU08820"
                     /EC_number="1.11.1.6"
                     /function="16.11: Scavenge (Catabolism)"
                     /function="16.8: Protect"
                     /experiment="publication(s) with functional evidences,
                     PMID:12029044, 12486061, 16535198, 22194458, 27935957"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 12029044, 12486061,
                     16535198, 22194458, 27935957; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="vegetative catalase 1"
                     /protein_id="NP_388762.2"
                     /db_xref="EnsemblGenomes-Gn:BSU08820"
                     /db_xref="EnsemblGenomes-Tr:CAB12710"
                     /db_xref="GOA:P26901"
                     /db_xref="InterPro:IPR002226"
                     /db_xref="InterPro:IPR010582"
                     /db_xref="InterPro:IPR011614"
                     /db_xref="InterPro:IPR018028"
                     /db_xref="InterPro:IPR020835"
                     /db_xref="InterPro:IPR024708"
                     /db_xref="InterPro:IPR024711"
                     /db_xref="InterPro:IPR037060"
                     /db_xref="SubtiList:BG10849"
                     /db_xref="UniProtKB/Swiss-Prot:P26901"
                     /translation="MSSNKLTTSWGAPVGDNQNSMTAGSRGPTLIQDVHLLEKLAHFN
                     RERVPERVVHAKGAGAHGYFEVTNDVTKYTKAAFLSEVGKRTPLFIRFSTVAGELGSA
                     DTVRDPRGFAVKFYTEEGNYDIVGNNTPVFFIRDAIKFPDFIHTQKRDPKTHLKNPTA
                     VWDFWSLSPESLHQVTILMSDRGIPATLRHMHGFGSHTFKWTNAEGEGVWIKYHFKTE
                     QGVKNLDVNTAAKIAGENPDYHTEDLFNAIENGDYPAWKLYVQIMPLEDANTYRFDPF
                     DVTKVWSQKDYPLIEVGRMVLDRNPENYFAEVEQATFSPGTLVPGIDVSPDKMLQGRL
                     FAYHDAHRYRVGANHQALPINRARNKVNNYQRDGQMRFDDNGGGSVYYEPNSFGGPKE
                     SPEDKQAAYPVQGIADSVSYDHYDHYTQAGDLYRLMSEDERTRLVENIVNAMKPVEKE
                     EIKLRQIEHFYKADPEYGKRVAEGLGLPIKKDS*"
                     /label="katA CDS"
     gene            complement(883760..885211)
                     /gene="katA"
                     /locus_tag="BSU_08820"
                     /old_locus_tag="BSU08820"
                     /label="katA gene"
     downshifts      complement(883770)
                     /Source="Nicolas_upshifts"
                     /id="D450"
                     /incds=0
                     /nref=221
                     /ntot=261
                     /MaxReadThrough="1.32399"
                     /MaxDrop="8.8938"
                     /score="25.1548262"
                     /energy="-8.3"
                     /TU="NA"
                     /idTUdmin="U688"
                     /TUdmin=0
                     /isTUend="TRUE"
                     /label="downshifts"
     promotor_-35    885188..885194
                     /Source="Nicolas_upshift_promotors"
                     /id="U687"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.382617382617383"
                     /psig="0.528471528471528"
                     /xcortree=1222
                     /SigmaFactorBS="tgagttttgattatctccaaccggagcgccccagctAGTTGT
                     CagtttatttgaactCATGTTATCACCTCTTGGAAtttataagaacataatatcatct
                     c"
                     /listShort="S309, ssuB, ssuA, ssuC, ssuD, ygaN"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    885209..885228
                     /Source="Nicolas_upshift_promotors"
                     /id="U687"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.382617382617383"
                     /psig="0.528471528471528"
                     /xcortree=1222
                     /SigmaFactorBS="tgagttttgattatctccaaccggagcgccccagctAGTTGT
                     CagtttatttgaactCATGTTATCACCTCTTGGAAtttataagaacataatatcatct
                     c"
                     /listShort="S309, ssuB, ssuA, ssuC, ssuD, ygaN"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        885212
                     /Source="Nicolas_upshifts"
                     /id="U687"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.382617382617383"
                     /psig="0.528471528471528"
                     /xcortree=1222
                     /SigmaFactorBS="tgagttttgattatctccaaccggagcgccccagctAGTTGT
                     CagtttatttgaactCATGTTATCACCTCTTGGAAtttataagaacataatatcatct
                     c"
                     /listShort="S309, ssuB, ssuA, ssuC, ssuD, ygaN"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-10    complement(885229..885248)
                     /Source="Nicolas_upshift_promotors"
                     /id="U688"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.99000999000999"
                     /psig=1
                     /xcortree=1533
                     /SigmaFactorBS="attaatagagataactattttataataattataaaataaTAT
                     TGACTttttacttagagaTGATATTATGTTCTTATAAAttccaagaggtgataacatg
                     a"
                     /listShort="katA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     S_feature       885234..885563
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_961009_961338"
                     /HighExp="S8, C30, S7, S6, BT, C90, B36, S4, S5, S1"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.528"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S309"
     upshifts        complement(885248)
                     /Source="Nicolas_upshifts"
                     /id="U688"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.99000999000999"
                     /psig=1
                     /xcortree=1533
                     /SigmaFactorBS="attaatagagataactattttataataattataaaataaTAT
                     TGACTttttacttagagaTGATATTATGTTCTTATAAAttccaagaggtgataacatg
                     a"
                     /listShort="katA"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(885262..885269)
                     /Source="Nicolas_upshift_promotors"
                     /id="U688"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.99000999000999"
                     /psig=1
                     /xcortree=1533
                     /SigmaFactorBS="attaatagagataactattttataataattataaaataaTAT
                     TGACTttttacttagagaTGATATTATGTTCTTATAAAttccaagaggtgataacatg
                     a"
                     /listShort="katA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     misc_feature    complement(885307..885325)
                     /Source="Nicolas_upshift_promotors"
                     /id="U689"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.351648351648352"
                     /psig="0.602397602397602"
                     /xcortree=647
                     /SigmaFactorBS="gaaaaattatttctccaaaaattattaagtgtcataaaaagc
                     tgttacaacaaggtttttcaacaatTTCGATACTATATATCGATtaatagagataact
                     a"
                     /listShort="katA"
                     /GFF_Attribute="listLong"
                     /label="promotor_single_box"
                     /note="Geneious type: promotor_single_box"
     upshifts        complement(885332)
                     /Source="Nicolas_upshifts"
                     /id="U689"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.351648351648352"
                     /psig="0.602397602397602"
                     /xcortree=647
                     /SigmaFactorBS="gaaaaattatttctccaaaaattattaagtgtcataaaaagc
                     tgttacaacaaggtttttcaacaatTTCGATACTATATATCGATtaatagagataact
                     a"
                     /listShort="katA"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     downshifts      885520
                     /Source="Nicolas_upshifts"
                     /id="D451"
                     /incds=0
                     /nref=9
                     /ntot=21
                     /MaxReadThrough="5.89897"
                     /MaxDrop="4.66837"
                     /score="39.0049465"
                     /energy="-19.7"
                     /TU="U687"
                     /idTUdmin="U686"
                     /TUdmin=1936
                     /isTUend="FALSE"
                     /label="downshifts"
     CDS             885619..886386
                     /gene="ssuB"
                     /locus_tag="BSU_08830"
                     /old_locus_tag="BSU08830"
                     /function="16.1: Circulate"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 2a: Function from experimental evidences
                     in other organisms; PubMedId: 9782504, 11390694, 16513748,
                     16885442; Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="aliphatic sulfonate ABC transporter
                     (ATP-bindingprotein)"
                     /protein_id="NP_388763.3"
                     /db_xref="EnsemblGenomes-Gn:BSU08830"
                     /db_xref="EnsemblGenomes-Tr:CAB12711"
                     /db_xref="GOA:P97027"
                     /db_xref="InterPro:IPR003439"
                     /db_xref="InterPro:IPR003593"
                     /db_xref="InterPro:IPR017871"
                     /db_xref="InterPro:IPR017875"
                     /db_xref="InterPro:IPR027417"
                     /db_xref="SubtiList:BG12232"
                     /db_xref="UniProtKB/Swiss-Prot:P97027"
                     /translation="MAVTISIKEKAFVQEGRKNTVLENIELSIAPGEFLTLIGPSGCG
                     KSTLLKIIAGLDSEYDGSVEINGRSVTAPGIQQGFIFQEHRLFPWLTVEQNIAADLNL
                     KDPKVKQKVDELIEIVRLKGSEKAYPRELSGGMSQRVAIARALLREPEVLLLDEPFGA
                     LDAFTRKHLQDVLLDIWRKKKTTMILVTHDIDESVYLGNELAILKAKPGKIHKLMPIH
                     LAYPRNRTTPDFQAIRQRVLSEFEKTEDLEYAEGSGI*"
                     /label="ssuB CDS"
     gene            885619..886386
                     /gene="ssuB"
                     /locus_tag="BSU_08830"
                     /old_locus_tag="BSU08830"
                     /label="ssuB gene"
     CDS             886404..887402
                     /gene="ssuA"
                     /locus_tag="BSU_08840"
                     /old_locus_tag="BSU08840"
                     /function="16.1: Circulate"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 2a: Function from experimental evidences
                     in other organisms; PubMedId: 9782504, 11390694, 16513748,
                     16885442; Product type f: factor"
                     /codon_start=1
                     /transl_table=11
                     /product="aliphatic sulfonate ABC transporter (binding
                     lipoprotein)"
                     /protein_id="NP_388764.1"
                     /db_xref="EnsemblGenomes-Gn:BSU08840"
                     /db_xref="EnsemblGenomes-Tr:CAB12712"
                     /db_xref="GOA:P40400"
                     /db_xref="InterPro:IPR001638"
                     /db_xref="InterPro:IPR010067"
                     /db_xref="InterPro:IPR015168"
                     /db_xref="SubtiList:BG10656"
                     /db_xref="UniProtKB/Swiss-Prot:P40400"
                     /translation="MKKGLIVLVAVIFLLAGCGANGASGDHKQLKEIRIGIQQSLSPL
                     LIAKEKGWFEDAFEKEGIKVKWVEFQSGPPQFEGLAADKLDFSQVGNSPVIAGQAAGI
                     DFKEIGLSQDGLKANGILVNQNSGIQDVKGLKGKKIAVAKGSSGFDFLYKALDQVGLS
                     ANDVTIIQLQPDEAASAFENGSVDAWSIWEPYLSLETMKHGAKILVNGESTDLYSPGF
                     TLVRTKFSEEHPDEVVRFLKVFNKAVVWQKEHLDEAADLYSDIKDLDKKVVENVLKNT
                     EPLNEIISDDIVKAQQETADFQFRTKAIDKKIDVKDVVDNTFIKKALEEHSSGGDQ*"
                     /label="ssuA CDS"
     gene            886404..887402
                     /gene="ssuA"
                     /locus_tag="BSU_08840"
                     /old_locus_tag="BSU08840"
                     /label="ssuA gene"
     CDS             887399..888229
                     /gene="ssuC"
                     /locus_tag="BSU_08850"
                     /old_locus_tag="BSU08850"
                     /function="16.1: Circulate"
                     /experiment="publication(s) with functional evidences,
                     PMID:11390694, 15849754, 16513748, 16850406, 16885442,
                     9782504"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 11390694, 15849754,
                     16513748, 16850406, 16885442, 9782504; Product type t :
                     transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="aliphatic sulfonate ABC transporter (permease)"
                     /protein_id="NP_388765.1"
                     /db_xref="EnsemblGenomes-Gn:BSU08850"
                     /db_xref="EnsemblGenomes-Tr:CAB12713"
                     /db_xref="GOA:P40401"
                     /db_xref="InterPro:IPR000515"
                     /db_xref="InterPro:IPR035906"
                     /db_xref="SubtiList:BG10657"
                     /db_xref="UniProtKB/Swiss-Prot:P40401"
                     /translation="MMKAEAAGSLPKTNAEAVRKKPGRKRYGWMKGLLLPAVIIAIWQ
                     VIGGLGVVSATVLPTPVTIVLTFKELILSGELFGHLQISIYRAALGFLLGAGLGLMIG
                     ILAGFSKRTELYLDPSLQMLRTVPHLAVTPLFILWFGFDEVSKILLIALGAFFPVYIN
                     TFNGIRGVDAKLFEVARVLEFKWHQQISKVILPAALPNILLGIRLSLGIAWLGLVVAE
                     LMGSSSGVGYMIMDARQFSQTNKVFAGIIIFAVVGKLTDSFVRLLERKLLKWRNSYEG
                     *"
                     /label="ssuC CDS"
     gene            887399..888229
                     /gene="ssuC"
                     /locus_tag="BSU_08850"
                     /old_locus_tag="BSU08850"
                     /label="ssuC gene"
     CDS             888252..889382
                     /gene="ssuD"
                     /locus_tag="BSU_08860"
                     /old_locus_tag="BSU08860"
                     /EC_number="1.14.14.5"
                     /function="16.11: Scavenge (Catabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:9782504, 11390694, 16513748, 16885442"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 9782504, 11390694,
                     16513748, 16885442; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="FMNH2-dependent aliphatic sulfonate
                     monooxygenase"
                     /protein_id="NP_388766.2"
                     /db_xref="EnsemblGenomes-Gn:BSU08860"
                     /db_xref="EnsemblGenomes-Tr:CAB12714"
                     /db_xref="GOA:P40402"
                     /db_xref="InterPro:IPR011251"
                     /db_xref="InterPro:IPR019911"
                     /db_xref="InterPro:IPR036661"
                     /db_xref="SubtiList:BG10658"
                     /db_xref="UniProtKB/Swiss-Prot:P40402"
                     /translation="MEILWFIPTHGDARYLGSESDGRTADHLYFKQVAQAADRLGYTG
                     VLLPTGRSCEDPWLTASALAGETKDLKFLVAVRPGLMQPSLAARMTSTLDRISDGRLL
                     INVVAGGDPYELAGDGLFISHDERYEATDEFLTVWRRLLQGETVSYEGKHIKVENSNL
                     LFPPQQEPHPPIYFGGSSQAGIEAAAKHTDVYLTWGEPPEQVKEKIERVKKQAAKEGR
                     SVRFGIRLHVIARETEQEAWEAAERLISHLDDDTIAKAQAALSRYDSSGQQRMAVLHQ
                     GDRTKLEISPNLWAGIGLVRGGAGTALVGDPQTIADRIAEYQALGIESFIFSGYPHLE
                     EAYYFAELVFPLLPFENDRTRKLQNKRGEAVGNTYFVKEKNA*"
                     /label="ssuD CDS"
     gene            888252..889382
                     /gene="ssuD"
                     /locus_tag="BSU_08860"
                     /old_locus_tag="BSU08860"
                     /label="ssuD gene"
     misc_feature    889409..889428
                     /Source="Nicolas_upshift_promotors"
                     /id="U690"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.974025974025974"
                     /psig="0.994005994005994"
                     /xcortree=1467
                     /SigmaFactorBS="ttattttgtcaaagagaaaaatgcatgagtttaactaaaata
                     cagccccccgaaCATGGTATGATATTCAAAAAaagggggctttttttctgaaaacatt
                     g"
                     /listShort="ygaN, S310"
                     /GFF_Attribute="listLong"
                     /label="promotor_single_box"
                     /note="Geneious type: promotor_single_box"
     upshifts        889415
                     /Source="Nicolas_upshifts"
                     /id="U690"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.974025974025974"
                     /psig="0.994005994005994"
                     /xcortree=1467
                     /SigmaFactorBS="ttattttgtcaaagagaaaaatgcatgagtttaactaaaata
                     cagccccccgaaCATGGTATGATATTCAAAAAaagggggctttttttctgaaaacatt
                     g"
                     /listShort="ygaN, S310"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             889486..890022
                     /gene="ygaN"
                     /locus_tag="BSU_08870"
                     /old_locus_tag="BSU08870"
                     /function="16.11: Scavenge (Catabolism)"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 12193636, 16513748;
                     Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative sulfur-related oxidoreductase"
                     /protein_id="NP_388767.1"
                     /db_xref="EnsemblGenomes-Gn:BSU08870"
                     /db_xref="EnsemblGenomes-Tr:CAB12715"
                     /db_xref="SubtiList:BG12233"
                     /db_xref="UniProtKB/Swiss-Prot:P97028"
                     /translation="MLSACGHSKQMEIKAADISDLEKNRMDVAASQAFTAEAVNIGEG
                     ISSADMYIEHYQKGKLVERFGPVRADYSEEKTDTIQFVYFENEEGEGKNKHTTIHFGI
                     VDKQGTIAADSSVKRDDSTTQEMTQNISSPEPITFEKPALIGSSIRGTDETMHTSEHK
                     KELIKHQDALLYYVELHH*"
                     /label="ygaN CDS"
     gene            889486..890022
                     /gene="ygaN"
                     /locus_tag="BSU_08870"
                     /old_locus_tag="BSU08870"
                     /label="ygaN gene"
     S_feature       890023..890093
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_965798_965868"
                     /HighExp="B36, BT, B60, Etha, S5, Heat, S2, BMM, S4, S3"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="0.25357200000000002"
                     /TUshortSig="NA"
                     /TUshortPSig="NA"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S310"
     promotor_-35    890063..890070
                     /Source="Nicolas_upshift_promotors"
                     /id="U691"
                     /multdbtbs="-"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp="0.718281718281718"
                     /psig="0.999000999001"
                     /xcortree=664
                     /SigmaFactorBS="caggccgtctgttttacaaagcggtatgCTTGCTTTtttgaa
                     tggtgaaTGATACATTTTAAATCGTAAcaatttcgatttaaagggaggctatgtgact
                     t"
                     /listShort="rpsNB"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    890084..890103
                     /Source="Nicolas_upshift_promotors"
                     /id="U691"
                     /multdbtbs="-"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp="0.718281718281718"
                     /psig="0.999000999001"
                     /xcortree=664
                     /SigmaFactorBS="caggccgtctgttttacaaagcggtatgCTTGCTTTtttgaa
                     tggtgaaTGATACATTTTAAATCGTAAcaatttcgatttaaagggaggctatgtgact
                     t"
                     /listShort="rpsNB"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        890095
                     /Source="Nicolas_upshifts"
                     /id="U691"
                     /multdbtbs="-"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp="0.718281718281718"
                     /psig="0.999000999001"
                     /xcortree=664
                     /SigmaFactorBS="caggccgtctgttttacaaagcggtatgCTTGCTTTtttgaa
                     tggtgaaTGATACATTTTAAATCGTAAcaatttcgatttaaagggaggctatgtgact
                     t"
                     /listShort="rpsNB"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             890134..890403
                     /gene="rpsNB"
                     /locus_tag="BSU_08880"
                     /old_locus_tag="BSU08880"
                     /function="16.2: Construct biomass (Anabolism)"
                     /function="16.8: Protect"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 2a: Function from experimental evidences
                     in other organisms; PubMedId: 12904577, 17163968,
                     19648245, 20208344, 27561249; Product type f: factor"
                     /codon_start=1
                     /transl_table=11
                     /product="alternative ribosomal protein S14"
                     /protein_id="NP_388768.1"
                     /db_xref="EnsemblGenomes-Gn:BSU08880"
                     /db_xref="EnsemblGenomes-Tr:CAB12716"
                     /db_xref="GOA:O31587"
                     /db_xref="InterPro:IPR001209"
                     /db_xref="InterPro:IPR018271"
                     /db_xref="InterPro:IPR023036"
                     /db_xref="SubtiList:BG13085"
                     /db_xref="UniProtKB/Swiss-Prot:O31587"
                     /translation="MAKKSKVAKELKRQQLVEQYAGIRRELKEKGDYEALSKLPRDSA
                     PGRLHNRCMVTGRPRAYMRKFKMSRIAFRELAHKGQIPGVKKASW*"
                     /label="rpsNB CDS"
     gene            890134..890403
                     /gene="rpsNB"
                     /locus_tag="BSU_08880"
                     /old_locus_tag="BSU08880"
                     /label="rpsNB gene"
     promotor_-35    890206..890210
                     /Source="Nicolas_upshift_promotors"
                     /id="U692"
                     /multdbtbs="-"
                     /comp="M20"
                     /sig="Sig-"
                     /pcomp="0.62037962037962"
                     /psig="0.020979020979021"
                     /xcortree=654
                     /SigmaFactorBS="aatacgctggtattagaCGCGAgttgaaggaaaaaggagatt
                     acGAGGCACTCAGCAAGCTgccaagagattcagcaccgggaaggcttcacaaccgctg
                     c"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    890233..890249
                     /Source="Nicolas_upshift_promotors"
                     /id="U692"
                     /multdbtbs="-"
                     /comp="M20"
                     /sig="Sig-"
                     /pcomp="0.62037962037962"
                     /psig="0.020979020979021"
                     /xcortree=654
                     /SigmaFactorBS="aatacgctggtattagaCGCGAgttgaaggaaaaaggagatt
                     acGAGGCACTCAGCAAGCTgccaagagattcagcaccgggaaggcttcacaaccgctg
                     c"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        890249
                     /Source="Nicolas_upshifts"
                     /id="U692"
                     /multdbtbs="-"
                     /comp="M20"
                     /sig="Sig-"
                     /pcomp="0.62037962037962"
                     /psig="0.020979020979021"
                     /xcortree=654
                     /SigmaFactorBS="aatacgctggtattagaCGCGAgttgaaggaaaaaggagatt
                     acGAGGCACTCAGCAAGCTgccaagagattcagcaccgggaaggcttcacaaccgctg
                     c"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     downshifts      890390
                     /Source="Nicolas_upshifts"
                     /id="D452"
                     /incds=0
                     /nref=41
                     /ntot=70
                     /MaxReadThrough="3.14088"
                     /MaxDrop="6.23701"
                     /score="18.4402235"
                     /energy="-10.1"
                     /TU="U692"
                     /idTUdmin="U691"
                     /TUdmin="-13"
                     /isTUend="TRUE"
                     /label="downshifts"
     CDS             complement(890421..890894)
                     /gene="ygaO"
                     /locus_tag="BSU_08890"
                     /old_locus_tag="BSU08890"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 15849754, 16850406;
                     Product type m: membrane component"
                     /codon_start=1
                     /transl_table=11
                     /product="putative integral inner membrane protein"
                     /protein_id="NP_388769.1"
                     /db_xref="EnsemblGenomes-Gn:BSU08890"
                     /db_xref="EnsemblGenomes-Tr:CAB12717"
                     /db_xref="GOA:P97029"
                     /db_xref="SubtiList:BG12234"
                     /db_xref="UniProtKB/Swiss-Prot:P97029"
                     /translation="MSMKTKAAFHLVLFGLACWALISYFEASEGIASFFGTKSGGMVF
                     DLNLTPFILFVAASAVYLYLQKKSRPARKQLLLPDEFEEQDEREQMMTAKACRASYIA
                     VYFSLPAAAVLLIFYPLFQSRIPFFPIIIVFIIMIIQHLSYVISFKKNEKNSGAL*"
                     /label="ygaO CDS"
     gene            complement(890421..890894)
                     /gene="ygaO"
                     /locus_tag="BSU_08890"
                     /old_locus_tag="BSU08890"
                     /label="ygaO gene"
     downshifts      complement(890457)
                     /Source="Nicolas_upshifts"
                     /id="D453"
                     /incds=0
                     /nref=105
                     /ntot=235
                     /MaxReadThrough="1.59724"
                     /MaxDrop="4.17785"
                     /score="7.33161195"
                     /energy="-10.1"
                     /TU="NA"
                     /idTUdmin="U693"
                     /TUdmin=0
                     /isTUend="TRUE"
                     /label="downshifts"
     CDS             complement(890896..891096)
                     /gene="ygzD"
                     /locus_tag="BSU_08899"
                     /old_locus_tag="BSU08899"
                     /function="16.3: Control"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; Product type r: regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="putative HTH-type transcriptional regulator"
                     /protein_id="YP_003097697.1"
                     /db_xref="EnsemblGenomes-Gn:BSU08899"
                     /db_xref="EnsemblGenomes-Tr:CAX52584"
                     /db_xref="GOA:C0H3X9"
                     /db_xref="InterPro:IPR001387"
                     /db_xref="InterPro:IPR010982"
                     /db_xref="UniProtKB/Swiss-Prot:C0H3X9"
                     /translation="MKNKVKELRARFGYSQEKLGETVGVTRQTVAAIEKGDYVPSLLL
                     ALKICKAFSMKMEDVFWLEEEN*"
                     /label="ygzD CDS"
     gene            complement(890896..891096)
                     /gene="ygzD"
                     /locus_tag="BSU_08899"
                     /old_locus_tag="BSU08899"
                     /label="ygzD gene"
     promotor_-10    complement(891125..891144)
                     /Source="Nicolas_upshift_promotors"
                     /id="U693"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.626373626373626"
                     /psig="0.996003996003996"
                     /xcortree=1780
                     /SigmaFactorBS="aaaaaaagttatctttttgtaaagttgttaagttcCATTTAC
                     AtaatgttaagtaTACTATACAATATAATCAATcgagattgtgaaggggacagacgtc
                     a"
                     /listShort="ygzD, ygaO"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(891139)
                     /Source="Nicolas_upshifts"
                     /id="U693"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.626373626373626"
                     /psig="0.996003996003996"
                     /xcortree=1780
                     /SigmaFactorBS="aaaaaaagttatctttttgtaaagttgttaagttcCATTTAC
                     AtaatgttaagtaTACTATACAATATAATCAATcgagattgtgaaggggacagacgtc
                     a"
                     /listShort="ygzD, ygaO"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(891157..891164)
                     /Source="Nicolas_upshift_promotors"
                     /id="U693"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.626373626373626"
                     /psig="0.996003996003996"
                     /xcortree=1780
                     /SigmaFactorBS="aaaaaaagttatctttttgtaaagttgttaagttcCATTTAC
                     AtaatgttaagtaTACTATACAATATAATCAATcgagattgtgaaggggacagacgtc
                     a"
                     /listShort="ygzD, ygaO"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-35    891220..891225
                     /Source="Nicolas_upshift_promotors"
                     /id="U694"
                     /multdbtbs="-"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp="0.35964035964036"
                     /psig=1
                     /xcortree=2589
                     /SigmaFactorBS="tacaaaaagataactttttttcgacaaaatttttatattccC
                     TTGACgaaaaataaataaACATGTAATATAAAAAAAGTcagagcggtactgttgctga
                     c"
                     /listShort="trnSL-Gly1, S311, S312, yhbA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    891239..891258
                     /Source="Nicolas_upshift_promotors"
                     /id="U694"
                     /multdbtbs="-"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp="0.35964035964036"
                     /psig=1
                     /xcortree=2589
                     /SigmaFactorBS="tacaaaaagataactttttttcgacaaaatttttatattccC
                     TTGACgaaaaataaataaACATGTAATATAAAAAAAGTcagagcggtactgttgctga
                     c"
                     /listShort="trnSL-Gly1, S311, S312, yhbA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        891239
                     /Source="Nicolas_upshifts"
                     /id="U694"
                     /multdbtbs="-"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp="0.35964035964036"
                     /psig=1
                     /xcortree=2589
                     /SigmaFactorBS="tacaaaaagataactttttttcgacaaaatttttatattccC
                     TTGACgaaaaataaataaACATGTAATATAAAAAAAGTcagagcggtactgttgctga
                     c"
                     /listShort="trnSL-Gly1, S311, S312, yhbA"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     tRNA            891290..891363
                     /gene="trnSL-Gly1"
                     /locus_tag="BSU_tRNA_82"
                     /product="tRNA-Gly"
                     /inference="profile:tRNAscan:1.23"
                     /note="transfer RNA-Gly(TCC); Evidence 2a: Function from
                     experimental evidences in other organisms; Product type n:
                     RNA"
                     /function="16.2: Construct biomass (Anabolism)"
                     /label="trnSL-Gly1 tRNA"
     gene            891290..891363
                     /gene="trnSL-Gly1"
                     /locus_tag="BSU_tRNA_82"
                     /label="trnSL-Gly1 gene"
     S_feature       891364..891546
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_967139_967321"
                     /HighExp="G135, G180, Oxctl, G150, Paraq, H2O2, C30, HPh,
                     LPh, LBGexp"
                     /AntisenseName="yhzB"
                     /AntisenseCor="0.42714037049296899"
                     /AntisenseRegPval="-12.6"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig=1
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S311"
     CDS             complement(891454..892077)
                     /gene="yhzB"
                     /locus_tag="BSU_08900"
                     /old_locus_tag="BSU08900"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved hypothetical protein"
                     /protein_id="NP_388771.1"
                     /db_xref="EnsemblGenomes-Gn:BSU08900"
                     /db_xref="EnsemblGenomes-Tr:CAB12718"
                     /db_xref="InterPro:IPR020825"
                     /db_xref="SubtiList:BG13086"
                     /db_xref="UniProtKB/Swiss-Prot:O31588"
                     /translation="MNIKLDSVITERAAGLHAAAVIYENIEVGSSPQMLKGRLRLFQE
                     SLFFDYADGGISDESFVKEWQKLFKQLNPSFEGETTPMEDMLVPISKEQFMESKDSAH
                     DTIDFFALKYSLPIMIYDAGKLHEPVRISLGEKENILLFSDENGIFGDFKNSVNHYPV
                     SNETKNMLQIIFFPPSIEKSSAVNLLSSLTKMFEQIHGGTHTVHWLT*"
                     /label="yhzB CDS"
     gene            complement(891454..892077)
                     /gene="yhzB"
                     /locus_tag="BSU_08900"
                     /old_locus_tag="BSU08900"
                     /label="yhzB gene"
     downshifts      complement(891469)
                     /Source="Nicolas_upshifts"
                     /id="D454"
                     /incds=0
                     /nref=25
                     /ntot=165
                     /MaxReadThrough="2.50849"
                     /MaxDrop="4.62652"
                     /score="-8.52782087"
                     /energy="-7.9"
                     /TU="NA"
                     /idTUdmin="U695"
                     /TUdmin=0
                     /isTUend="TRUE"
                     /label="downshifts"
     downshifts      891503
                     /Source="Nicolas_upshifts"
                     /id="D455"
                     /incds=0
                     /nref=1
                     /ntot=88
                     /MaxReadThrough="4.14204"
                     /MaxDrop="2.36986"
                     /score="16.0836885"
                     /energy="-15.5"
                     /TU="U694"
                     /idTUdmin="U692"
                     /TUdmin=1078
                     /isTUend="FALSE"
                     /label="downshifts"
     S_feature       891548..892159
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_967323_967934"
                     /HighExp="G180, G135, G150, Paraq, Oxctl, H2O2, LBGstat,
                     Cold, LBGexp, S6"
                     /AntisenseName="yhzB"
                     /AntisenseCor="0.28959466335762701"
                     /AntisenseRegPval="-5.9"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig=1
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S312"
     promotor_-10    complement(892101..892120)
                     /Source="Nicolas_upshift_promotors"
                     /id="U695"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.631368631368631"
                     /psig="0.999000999001"
                     /xcortree=1953
                     /SigmaFactorBS="tctttgagctgataaacgttcatgttttgcacagcctccttT
                     CTTTGTGataaaacgacacaGCGTTTATAATAGGTTGATAtcacgtaactggagtgaa
                     t"
                     /listShort="yhzB"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(892122)
                     /Source="Nicolas_upshifts"
                     /id="U695"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.631368631368631"
                     /psig="0.999000999001"
                     /xcortree=1953
                     /SigmaFactorBS="tctttgagctgataaacgttcatgttttgcacagcctccttT
                     CTTTGTGataaaacgacacaGCGTTTATAATAGGTTGATAtcacgtaactggagtgaa
                     t"
                     /listShort="yhzB"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(892134..892141)
                     /Source="Nicolas_upshift_promotors"
                     /id="U695"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.631368631368631"
                     /psig="0.999000999001"
                     /xcortree=1953
                     /SigmaFactorBS="tctttgagctgataaacgttcatgttttgcacagcctccttT
                     CTTTGTGataaaacgacacaGCGTTTATAATAGGTTGATAtcacgtaactggagtgaa
                     t"
                     /listShort="yhzB"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             892160..893320
                     /gene="queG"
                     /locus_tag="BSU_08910"
                     /old_locus_tag="BSU08910"
                     /EC_number="1.17.99.-"
                     /function="10.3: tRNA and rRNA base modification"
                     /experiment="publication(s) with functional evidences,
                     PMID:8830270, 21502530, 26230193, 27638883, 28128549"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 8830270, 21502530,
                     26230193, 27638883, 28128549; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="epoxyqueuosine reductase"
                     /protein_id="NP_388772.2"
                     /db_xref="EnsemblGenomes-Gn:BSU08910"
                     /db_xref="EnsemblGenomes-Tr:CAB12719"
                     /db_xref="GOA:P97030"
                     /db_xref="InterPro:IPR004155"
                     /db_xref="InterPro:IPR004453"
                     /db_xref="InterPro:IPR013542"
                     /db_xref="InterPro:IPR016024"
                     /db_xref="InterPro:IPR017896"
                     /db_xref="InterPro:IPR017900"
                     /db_xref="PDB:5D08"
                     /db_xref="PDB:5D0A"
                     /db_xref="PDB:5D0B"
                     /db_xref="PDB:5T8Y"
                     /db_xref="SubtiList:BG12236"
                     /db_xref="UniProtKB/Swiss-Prot:P97030"
                     /translation="MNVYQLKEELIEYAKSIGVDKIGFTTADTFDSLKDRLILQESLG
                     YLSGFEEPDIEKRVTPKLLLPKAKSIVAIALAYPSRMKDAPRSTRTERRGIFCRASWG
                     KDYHDVLREKLDLLEDFLKSKHEDIRTKSMVDTGELSDRAVAERAGIGFSAKNCMITT
                     PEYGSYVYLAEMITNIPFEPDVPIEDMCGSCTKCLDACPTGALVNPGQLNAQRCISFL
                     TQTKGFLPDEFRTKIGNRLYGCDTCQTVCPLNKGKDFHLHPEMEPDPEIAKPLLKPLL
                     AISNREFKEKFGHVSGSWRGKKPIQRNAILALAHFKDASALPELTELMHKDPRPVIRG
                     TAAWAIGKIGDPAYAEELEKALEKEKDEEAKLEIEKGIELLKASGMTKQGLS*"
                     /label="queG CDS"
     gene            892160..893320
                     /gene="queG"
                     /locus_tag="BSU_08910"
                     /old_locus_tag="BSU08910"
                     /label="queG gene"
     downshifts      893329
                     /Source="Nicolas_upshifts"
                     /id="D456"
                     /incds=0
                     /nref=9
                     /ntot=123
                     /MaxReadThrough="5.29174"
                     /MaxDrop="3.3561"
                     /score="33.0421154"
                     /energy="-15.1"
                     /TU="NA"
                     /idTUdmin="U694"
                     /TUdmin=0
                     /isTUend="TRUE"
                     /label="downshifts"
     misc_feature    893346..893358
                     /Source="Nicolas_upshift_promotors"
                     /id="U696"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.909090909090909"
                     /psig="0.909090909090909"
                     /xcortree=1143
                     /SigmaFactorBS="tcaggcatgactaaacaaggcctgtcctgacatacgtataga
                     gcagaaggaaaaaACACTTGAGATCAtccaagtgttttttctctataaaaaagtatgg
                     c"
                     /listShort="yhbB, cspR"
                     /GFF_Attribute="listLong"
                     /label="promotor_single_box"
                     /note="Geneious type: promotor_single_box"
     upshifts        893351
                     /Source="Nicolas_upshifts"
                     /id="U696"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.909090909090909"
                     /psig="0.909090909090909"
                     /xcortree=1143
                     /SigmaFactorBS="tcaggcatgactaaacaaggcctgtcctgacatacgtataga
                     gcagaaggaaaaaACACTTGAGATCAtccaagtgttttttctctataaaaaagtatgg
                     c"
                     /listShort="yhbB, cspR"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             893387..894322
                     /gene="yhbB"
                     /locus_tag="BSU_08920"
                     /old_locus_tag="BSU08920"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved hypothetical protein"
                     /protein_id="NP_388773.1"
                     /db_xref="EnsemblGenomes-Gn:BSU08920"
                     /db_xref="EnsemblGenomes-Tr:CAB12720"
                     /db_xref="InterPro:IPR024301"
                     /db_xref="SubtiList:BG11811"
                     /db_xref="UniProtKB/Swiss-Prot:O31589"
                     /translation="MAGGVSLKYILEQLAEERLGFLVNGHAMRQESQVGDLKVMERKK
                     KLLEKRKVDIIKAKAKAVINHVRVEDDGTTCLSYTIHYEYVCKEQDDSLYIEEHIEER
                     MAFLYDHILISDQEIAKKPAGFHEGTSIIDYSEAEEEREAFGRAFQYDRLGAVQYAEK
                     FWNKRNPAYKNFSDNCTNFISQCLHAGGAPMRGHPNRGSGWWMKQSSWSYSWTVAHSM
                     KMYLSNSKAGLRAVRVKSAEELMPGDVICYDFEGDGRFNHTTIVVAKDKGNMPLVNAQ
                     TYDSRMRYWSYEDSTAYTPSIRYAFFHIVDDTTKE*"
                     /label="yhbB CDS"
     gene            893387..894322
                     /gene="yhbB"
                     /locus_tag="BSU_08920"
                     /old_locus_tag="BSU08920"
                     /label="yhbB gene"
     downshifts      complement(893405)
                     /Source="Nicolas_upshifts"
                     /id="D457"
                     /incds=0
                     /nref=2
                     /ntot=17
                     /MaxReadThrough="2.06584"
                     /MaxDrop="3.33944"
                     /score="-3.35852865"
                     /energy="-6"
                     /TU="NA"
                     /idTUdmin="U695"
                     /TUdmin="-1936"
                     /isTUend="FALSE"
                     /label="downshifts"
     promotor_-35    894306..894309
                     /Source="Nicolas_upshift_promotors"
                     /id="U697"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.692307692307692"
                     /psig=1
                     /xcortree=2502
                     /SigmaFactorBS="acacgccgtcaatacgatatgccttttttcatatcgttgatg
                     ATACgacaaaagagtaattAATGTTATAATGATGGGCGGataagaaaaacagaggtga
                     a"
                     /listShort="cspR"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     upshifts        894324
                     /Source="Nicolas_upshifts"
                     /id="U697"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.692307692307692"
                     /psig=1
                     /xcortree=2502
                     /SigmaFactorBS="acacgccgtcaatacgatatgccttttttcatatcgttgatg
                     ATACgacaaaagagtaattAATGTTATAATGATGGGCGGataagaaaaacagaggtga
                     a"
                     /listShort="cspR"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-10    894325..894344
                     /Source="Nicolas_upshift_promotors"
                     /id="U697"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.692307692307692"
                     /psig=1
                     /xcortree=2502
                     /SigmaFactorBS="acacgccgtcaatacgatatgccttttttcatatcgttgatg
                     ATACgacaaaagagtaattAATGTTATAATGATGGGCGGataagaaaaacagaggtga
                     a"
                     /listShort="cspR"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     CDS             894360..894842
                     /gene="trmL"
                     /locus_tag="BSU_08930"
                     /old_locus_tag="BSU08930"
                     /EC_number="2.1.1.207"
                     /function="16.6: Maintain"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 2a: Function from experimental evidences
                     in other organisms; PubMedId: 12682299, 20855540; Product
                     type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (cytidine(34)-2'-O)-methyltransferase"
                     /protein_id="NP_388774.2"
                     /db_xref="EnsemblGenomes-Gn:BSU08930"
                     /db_xref="EnsemblGenomes-Tr:CAB12721"
                     /db_xref="GOA:O31590"
                     /db_xref="InterPro:IPR001537"
                     /db_xref="InterPro:IPR016914"
                     /db_xref="InterPro:IPR029026"
                     /db_xref="InterPro:IPR029028"
                     /db_xref="SubtiList:BG11802"
                     /db_xref="UniProtKB/Swiss-Prot:O31590"
                     /translation="MNIVALHVVLYQPEIPANTGNIARTCAATNTTLHLIRPLGFSTD
                     DKMLKRAGLDYWEFVNVVYHDSLEELFEAYKKGKFFFITKFGQQPHTSFDYTDLDEDY
                     FFVFGRETSGLPKDLIQNNMDRCLRLPMTEHVRSLNLSNTAAILVYEALRQQNYRDLK
                     *"
                     /label="trmL CDS"
     gene            894360..894842
                     /gene="trmL"
                     /locus_tag="BSU_08930"
                     /old_locus_tag="BSU08930"
                     /label="trmL gene"
     downshifts      894825
                     /Source="Nicolas_upshifts"
                     /id="D458"
                     /incds=0
                     /nref=203
                     /ntot=259
                     /MaxReadThrough="4.6846"
                     /MaxDrop="7.03587"
                     /score="33.0421154"
                     /energy="-15.1"
                     /TU="NA"
                     /idTUdmin="U696"
                     /TUdmin=0
                     /isTUend="TRUE"
                     /label="downshifts"
     CDS             894892..895608
                     /gene="yhbD"
                     /locus_tag="BSU_08940"
                     /old_locus_tag="BSU08940"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; Product type f: factor"
                     /codon_start=1
                     /transl_table=11
                     /product="putative sporulation-related protein"
                     /protein_id="NP_388775.1"
                     /db_xref="EnsemblGenomes-Gn:BSU08940"
                     /db_xref="EnsemblGenomes-Tr:CAB12722"
                     /db_xref="InterPro:IPR025063"
                     /db_xref="SubtiList:BG12237"
                     /db_xref="UniProtKB/Swiss-Prot:P97032"
                     /translation="MLCFVFGLNNVTVLCYNVPIKGAGLMEEQLISKKELLERTSISY
                     GQLYRWKRKNLIPEEWFIRKSTFTGQETFFPREEILKRISMIQKMKENLSLDEMREML
                     SPKMKDVSMTADELLHKGLVSRPALEAYSEDGGSPVFSSSDLLSLFVLEGLLQSGNVS
                     LAEAKMAAEVLKKHDTEEIEKQTELIVLRKLGVTTCFIAAAADSILFESSVKVVERVD
                     LLKASEELKTTFMQEGHQWM*"
                     /label="yhbD CDS"
     gene            894892..895608
                     /gene="yhbD"
                     /locus_tag="BSU_08940"
                     /old_locus_tag="BSU08940"
                     /label="yhbD gene"
     promotor_-35    894912..894919
                     /Source="Nicolas_upshift_promotors"
                     /id="U698"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.761238761238761"
                     /psig=1
                     /xcortree=2394
                     /SigmaFactorBS="tttttgcggatgttgaaatgctttgtttcgtttttggGCTTA
                     ACAacgtaacagtgttaTGTTACAATGTACCCATCAAaggagctggacttatggaaga
                     a"
                     /listShort="yhbD, yhbE, yhbF"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    894934..894953
                     /Source="Nicolas_upshift_promotors"
                     /id="U698"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.761238761238761"
                     /psig=1
                     /xcortree=2394
                     /SigmaFactorBS="tttttgcggatgttgaaatgctttgtttcgtttttggGCTTA
                     ACAacgtaacagtgttaTGTTACAATGTACCCATCAAaggagctggacttatggaaga
                     a"
                     /listShort="yhbD, yhbE, yhbF"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        894935
                     /Source="Nicolas_upshifts"
                     /id="U698"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.761238761238761"
                     /psig=1
                     /xcortree=2394
                     /SigmaFactorBS="tttttgcggatgttgaaatgctttgtttcgtttttggGCTTA
                     ACAacgtaacagtgttaTGTTACAATGTACCCATCAAaggagctggacttatggaaga
                     a"
                     /listShort="yhbD, yhbE, yhbF"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             895599..896312
                     /gene="yhbE"
                     /locus_tag="BSU_08950"
                     /old_locus_tag="BSU08950"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms; PubMedId: 12562816, 20617312; Product type
                     cp:cell process"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved protein involved in sporulation"
                     /protein_id="NP_388776.1"
                     /db_xref="EnsemblGenomes-Gn:BSU08950"
                     /db_xref="EnsemblGenomes-Tr:CAB12723"
                     /db_xref="InterPro:IPR007607"
                     /db_xref="SubtiList:BG10802"
                     /db_xref="UniProtKB/Swiss-Prot:P39132"
                     /translation="MDVVEKLVINGSGSSKGGTFQSVEINGSGTVAGDVECDTFSFNG
                     NGKADGSVKAKAVTISGSGKIHGDVEAESIRMNGTGFIQGEVSAKQLKIAGSSTFGGT
                     VKADGIDISGKAVMEADCETETFQSEGKCKISGLLNADQVIIKLSAGESYAREIGCRH
                     LQVTCRKGMLTLLRLMPQPVLTAELIEGDVIELTNTKAKTVRGNKVIIGPDCQIETVE
                     YSGDYTCDPSASVETSTKL*"
                     /label="yhbE CDS"
     gene            895599..896312
                     /gene="yhbE"
                     /locus_tag="BSU_08950"
                     /old_locus_tag="BSU08950"
                     /label="yhbE gene"
     CDS             896324..897031
                     /gene="yhbF"
                     /locus_tag="BSU_08960"
                     /old_locus_tag="BSU08960"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms; PubMedId: 12562816, 20617312; Product type
                     cp:cell process"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved protein involved in sporulation"
                     /protein_id="NP_388777.2"
                     /db_xref="EnsemblGenomes-Gn:BSU08960"
                     /db_xref="EnsemblGenomes-Tr:CAB12724"
                     /db_xref="SubtiList:BG10803"
                     /db_xref="UniProtKB/Swiss-Prot:P39133"
                     /translation="METTKLGNLKLYGAGHAAGGAYHNVSIKGEGIVGEGLSAVGCRI
                     YGTGLFLGKAETERLRVLGESECKGDLTAGKINIYGTMKVSGSLQFDRFNLKGQTEIG
                     GNMTGESCDVKGKLSVIGDCETEMFHVTGCVDVSGLLNSGEIKLGLSHDISHVQEIGG
                     TTITVKRRASFFSRKKGKLIADVIEGDRVYLENTEAAVVRGKEVIIGPGCSIGTIEYE
                     YKCECDPHSQIKEKTKL*"
                     /label="yhbF CDS"
     gene            896324..897031
                     /gene="yhbF"
                     /locus_tag="BSU_08960"
                     /old_locus_tag="BSU08960"
                     /label="yhbF gene"
     downshifts      896915
                     /Source="Nicolas_upshifts"
                     /id="D459"
                     /incds=1
                     /nref=1
                     /ntot=127
                     /MaxReadThrough="4.34704"
                     /MaxDrop="2.64409"
                     /score="45.497414"
                     /energy="-15.3"
                     /TU="U698"
                     /idTUdmin="U698"
                     /TUdmin="-110"
                     /isTUend="FALSE"
                     /label="downshifts"
     downshifts      896959
                     /Source="Nicolas_upshifts"
                     /id="D460"
                     /incds=1
                     /nref=2
                     /ntot=35
                     /MaxReadThrough="4.02504"
                     /MaxDrop="3.21894"
                     /score="45.497414"
                     /energy="-15.3"
                     /TU="U698"
                     /idTUdmin="U698"
                     /TUdmin="-66"
                     /isTUend="FALSE"
                     /label="downshifts"
     downshifts      897025
                     /Source="Nicolas_upshifts"
                     /id="D461"
                     /incds=0
                     /nref=2
                     /ntot=41
                     /MaxReadThrough="1.06365"
                     /MaxDrop="3.74046"
                     /score="45.497414"
                     /energy="-15.3"
                     /TU="NA"
                     /idTUdmin="U698"
                     /TUdmin=0
                     /isTUend="TRUE"
                     /label="downshifts"
     S_feature       complement(897058..897233)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_972833_973008_c"
                     /HighExp="M9-stat, BC, S4, T0.30H, LoTm, Lbstat, S2, BT,
                     HiOs, Lbtran"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="0.99846699999999999"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.998"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S313"
     downshifts      complement(897101)
                     /Source="Nicolas_upshifts"
                     /id="D462"
                     /incds=0
                     /nref=63
                     /ntot=220
                     /MaxReadThrough="3.38525"
                     /MaxDrop="4.33005"
                     /score="18.2489321"
                     /energy="-13.5"
                     /TU="U699"
                     /idTUdmin="U699"
                     /TUdmin="-198"
                     /isTUend="FALSE"
                     /label="downshifts"
     promotor_-10    complement(897225..897244)
                     /Source="Nicolas_upshift_promotors"
                     /id="U699"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.653346653346653"
                     /psig="0.998001998001998"
                     /xcortree=456
                     /SigmaFactorBS="tttcttaaaaataaagatactcatacaTCGTTGACaaggcag
                     actgcgaCCGTTCATAATAAAGAAAAAtacagaatcatccagactcggacagcacgga
                     a"
                     /listShort="S313"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(897233)
                     /Source="Nicolas_upshifts"
                     /id="U699"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.653346653346653"
                     /psig="0.998001998001998"
                     /xcortree=456
                     /SigmaFactorBS="tttcttaaaaataaagatactcatacaTCGTTGACaaggcag
                     actgcgaCCGTTCATAATAAAGAAAAAtacagaatcatccagactcggacagcacgga
                     a"
                     /listShort="S313"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(897259..897266)
                     /Source="Nicolas_upshift_promotors"
                     /id="U699"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.653346653346653"
                     /psig="0.998001998001998"
                     /xcortree=456
                     /SigmaFactorBS="tttcttaaaaataaagatactcatacaTCGTTGACaaggcag
                     actgcgaCCGTTCATAATAAAGAAAAAtacagaatcatccagactcggacagcacgga
                     a"
                     /listShort="S313"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-35    897298..897303
                     /Source="Nicolas_upshift_promotors"
                     /id="U700"
                     /multdbtbs="SigE"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp=1
                     /psig=1
                     /xcortree=1094
                     /SigmaFactorBS="gtcaacgatgtatgagtatctttatttttaagaaaccaaAGC
                     ATGtatcacgagatggcgGCATAGATTGTATCAAAGTaccttatttgcatagtgtatc
                     a"
                     /listShort="prkA, S314, yhbH"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    897319..897337
                     /Source="Nicolas_upshift_promotors"
                     /id="U700"
                     /multdbtbs="SigE"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp=1
                     /psig=1
                     /xcortree=1094
                     /SigmaFactorBS="gtcaacgatgtatgagtatctttatttttaagaaaccaaAGC
                     ATGtatcacgagatggcgGCATAGATTGTATCAAAGTaccttatttgcatagtgtatc
                     a"
                     /listShort="prkA, S314, yhbH"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        897319
                     /Source="Nicolas_upshifts"
                     /id="U700"
                     /multdbtbs="SigE"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp=1
                     /psig=1
                     /xcortree=1094
                     /SigmaFactorBS="gtcaacgatgtatgagtatctttatttttaagaaaccaaAGC
                     ATGtatcacgagatggcgGCATAGATTGTATCAAAGTaccttatttgcatagtgtatc
                     a"
                     /listShort="prkA, S314, yhbH"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             897381..899276
                     /gene="prkA"
                     /locus_tag="BSU_08970"
                     /old_locus_tag="BSU08970"
                     /function="16.3: Control"
                     /experiment="publication(s) with functional evidences,
                     PMID:8626065, 12662922, 25983726, 27806131"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 8626065, 12662922,
                     25983726, 27806131; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="serine protein kinase (involved in sporulation)"
                     /protein_id="NP_388778.1"
                     /db_xref="EnsemblGenomes-Gn:BSU08970"
                     /db_xref="EnsemblGenomes-Tr:CAB12725"
                     /db_xref="GOA:P39134"
                     /db_xref="InterPro:IPR010650"
                     /db_xref="InterPro:IPR013153"
                     /db_xref="InterPro:IPR016230"
                     /db_xref="InterPro:IPR027417"
                     /db_xref="SubtiList:BG10804"
                     /db_xref="UniProtKB/Swiss-Prot:P39134"
                     /translation="MDILKKIEKYREEEQRLKWEGTFADYLEIIKENPMVAQSAHSRV
                     FNMIKDSGIEEIDGRKKYSFFDRELFGLEESLERLVEEYFHPAAKRLDVRKRILLLMG
                     PVSGGKSTLVTMLKKGLEAYTLTDNGAVYAIKGCPMHEDPLHLIPHHLRDDFYREYGI
                     RIEGSLSPLNVMRLEEEYGGRIEDVKVERIFFSEDKRTGIGTFSPSDPKSQDIADLTG
                     SIDFSTIAEYGSESDPRAYRFDGELNKANRGMMEFQEMLKCDEKFLWHLLSLTQEGNF
                     KAGRFALISADELIVAHTNETEYRSFISNKKNEALHSRIIVMPVPYNLKVSEEERIYE
                     KMIAESDVADVHIAPHTLKVAAMFSILTRLKEPKRSDIDLVKKMRLYDGESVEGYNSV
                     DVEDMKKEYNDEGMSGIDPRYVINRISSTIIRKNMESINSLDVLRSLKEGLDQHPSIS
                     SEDRERYLNFISAARKEYDDIAKKEVQKAFVYSYEESAKTLMDNYLDNVEAYCNKNKL
                     RDPLTGEEMNPDEKLMRSIEEQIGISENAKKAFREEILIRISAYARKGKRFDYNSHER
                     LREAIQKKLFADLKDVVKITTSTKTPDEQQLKKVNEVVARLIDEHGYNSTSANELLKY
                     VGSLLNR*"
                     /label="prkA CDS"
     gene            897381..899276
                     /gene="prkA"
                     /locus_tag="BSU_08970"
                     /old_locus_tag="BSU08970"
                     /label="prkA gene"
     promotor_no_box 897823..897923
                     /Source="Nicolas_upshift_promotors"
                     /id="U701"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="Sig-"
                     /pcomp="0.31968031968032"
                     /psig="0.31968031968032"
                     /xcortree=684
                     /SigmaFactorBS="atcatttacgcgatgacttttacagagaatacggcattagaa
                     tagaaggaagtctttctcctttaaatgtcatgaggctggaggaagagtacggaggaag
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_no_box"
     upshifts        897883
                     /Source="Nicolas_upshifts"
                     /id="U701"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="Sig-"
                     /pcomp="0.31968031968032"
                     /psig="0.31968031968032"
                     /xcortree=684
                     /SigmaFactorBS="atcatttacgcgatgacttttacagagaatacggcattagaa
                     tagaaggaagtctttctcctttaaatgtcatgaggctggaggaagagtacggaggaag
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     downshifts      897949
                     /Source="Nicolas_upshifts"
                     /id="D463"
                     /incds=1
                     /nref=5
                     /ntot=18
                     /MaxReadThrough="7.33384"
                     /MaxDrop="5.65132"
                     /score="45.497414"
                     /energy="-15.3"
                     /TU="U700"
                     /idTUdmin="U701"
                     /TUdmin=0
                     /isTUend="TRUE"
                     /label="downshifts"
     downshifts      899269
                     /Source="Nicolas_upshifts"
                     /id="D464"
                     /incds=0
                     /nref=11
                     /ntot=57
                     /MaxReadThrough="6.19375"
                     /MaxDrop="4.381"
                     /score="-0.497429548"
                     /energy="-10.6"
                     /TU="U700"
                     /idTUdmin="U703"
                     /TUdmin="-528"
                     /isTUend="FALSE"
                     /label="downshifts"
     promotor_-35    899333..899338
                     /Source="Nicolas_upshift_promotors"
                     /id="U702"
                     /multdbtbs="SigE"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.971028971028971"
                     /psig="0.971028971028971"
                     /xcortree=1058
                     /SigmaFactorBS="agggcgggttattttgtcccattttctaaatagtttGTCAAT
                     taaacgtgcatatgtGCATATGATGAATATAAATcttttcaaaagacttgtttcataa
                     t"
                     /listShort="S314, yhbH"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    899354..899372
                     /Source="Nicolas_upshift_promotors"
                     /id="U702"
                     /multdbtbs="SigE"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.971028971028971"
                     /psig="0.971028971028971"
                     /xcortree=1058
                     /SigmaFactorBS="agggcgggttattttgtcccattttctaaatagtttGTCAAT
                     taaacgtgcatatgtGCATATGATGAATATAAATcttttcaaaagacttgtttcataa
                     t"
                     /listShort="S314, yhbH"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     S_feature       899357..899455
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_975132_975230"
                     /HighExp="S6, S7, S5, S8, S4, S3, BT, LoTm, B36, Pyr"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigEF, SigEF"
                     /TUshortPSig="0.971, 1"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S314"
     upshifts        899357
                     /Source="Nicolas_upshifts"
                     /id="U702"
                     /multdbtbs="SigE"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.971028971028971"
                     /psig="0.971028971028971"
                     /xcortree=1058
                     /SigmaFactorBS="agggcgggttattttgtcccattttctaaatagtttGTCAAT
                     taaacgtgcatatgtGCATATGATGAATATAAATcttttcaaaagacttgtttcataa
                     t"
                     /listShort="S314, yhbH"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             899456..900634
                     /gene="yhbH"
                     /locus_tag="BSU_08980"
                     /old_locus_tag="BSU08980"
                     /function="16.13: Shape"
                     /experiment="publication(s) with functional evidences,
                     PMID:11988534, 12662922, 14523133, 25983726"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 11988534, 12662922,
                     14523133, 25983726; Product type f: factor"
                     /codon_start=1
                     /transl_table=11
                     /product="factor involved in shape determination"
                     /protein_id="NP_388779.1"
                     /db_xref="EnsemblGenomes-Gn:BSU08980"
                     /db_xref="EnsemblGenomes-Tr:CAB12726"
                     /db_xref="InterPro:IPR006698"
                     /db_xref="InterPro:IPR014230"
                     /db_xref="SubtiList:BG11238"
                     /db_xref="UniProtKB/Swiss-Prot:P45742"
                     /translation="MSQNDSGHFLISEENWSLHRKGFDDQQRHQKKVQEAIKNNLPDL
                     VTEESIIMSNGKDVVKIPIRSLDEYKIRYNYDKNKHVGQGDGESQVGDVVARDGSDKK
                     QGPGKGQGAGDQAGEDYYEAEVSLMDLEEALFKELELPNLQQKERDNIIHTDIEFNDI
                     RKTGLTGNIDKKRTMMSAFKRNAMSGKPSFYPIYPEDLKYKTWNDITKPESKAVVLAM
                     MDTSGSMGVWEKYMARSFFFWMTRFLRTKYETVEIEFIAHHTEARVVSEEDFFSKGES
                     GGTICSSVYRKSLELIDEKYNPARYNIYPFHFSDGDNLTSDNARCVKLVNDIMKKANL
                     FCYGEVNQYNRHSTLMSAYKNVKDEKFKYYILKQKSDVFQALKNFFRNEESGVSHQFS
                     *"
                     /label="yhbH CDS"
     gene            899456..900634
                     /gene="yhbH"
                     /locus_tag="BSU_08980"
                     /old_locus_tag="BSU08980"
                     /label="yhbH gene"
     promotor_-35    899654..899657
                     /Source="Nicolas_upshift_promotors"
                     /id="U703"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.367632367632368"
                     /psig="0.985014985014985"
                     /xcortree=615
                     /SigmaFactorBS="atggaaaagatgtagtgaagatcccaatccgttcacttGATG
                     agtataaaatccgtTATAACTATGATAAAAATAAacatgtagggcaaggagacggcga
                     g"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    899672..899691
                     /Source="Nicolas_upshift_promotors"
                     /id="U703"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.367632367632368"
                     /psig="0.985014985014985"
                     /xcortree=615
                     /SigmaFactorBS="atggaaaagatgtagtgaagatcccaatccgttcacttGATG
                     agtataaaatccgtTATAACTATGATAAAAATAAacatgtagggcaaggagacggcga
                     g"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        899676
                     /Source="Nicolas_upshifts"
                     /id="U703"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.367632367632368"
                     /psig="0.985014985014985"
                     /xcortree=615
                     /SigmaFactorBS="atggaaaagatgtagtgaagatcccaatccgttcacttGATG
                     agtataaaatccgtTATAACTATGATAAAAATAAacatgtagggcaaggagacggcga
                     g"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     downshifts      complement(899917)
                     /Source="Nicolas_upshifts"
                     /id="D465"
                     /incds=1
                     /nref=1
                     /ntot=23
                     /MaxReadThrough="2.79078"
                     /MaxDrop="2.94521"
                     /score="-7.1109433"
                     /energy="-11.2"
                     /TU="NA"
                     /idTUdmin="U699"
                     /TUdmin="-3014"
                     /isTUend="FALSE"
                     /label="downshifts"
     downshifts      900613
                     /Source="Nicolas_upshifts"
                     /id="D466"
                     /incds=0
                     /nref=63
                     /ntot=180
                     /MaxReadThrough="1.86673"
                     /MaxDrop="8.19565"
                     /score="27.3980811"
                     /energy="-5.6"
                     /TU="NA"
                     /idTUdmin="U702"
                     /TUdmin=2
                     /isTUend="TRUE"
                     /label="downshifts"
     promotor_-35    900721..900728
                     /Source="Nicolas_upshift_promotors"
                     /id="U704"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.754245754245754"
                     /psig="0.996003996003996"
                     /xcortree=2450
                     /SigmaFactorBS="cgcttgcgaaaaaaatacgggagaaaaagaaatttttcCTTT
                     GACAaatcttctttcattTATTAATATTTTATCTTGTGaactattattgaggaatgag
                     g"
                     /listShort="yhbI, yhbJ, yhcA, yhcB, yhcC"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    900743..900762
                     /Source="Nicolas_upshift_promotors"
                     /id="U704"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.754245754245754"
                     /psig="0.996003996003996"
                     /xcortree=2450
                     /SigmaFactorBS="cgcttgcgaaaaaaatacgggagaaaaagaaatttttcCTTT
                     GACAaatcttctttcattTATTAATATTTTATCTTGTGaactattattgaggaatgag
                     g"
                     /listShort="yhbI, yhbJ, yhcA, yhcB, yhcC"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        900743
                     /Source="Nicolas_upshifts"
                     /id="U704"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.754245754245754"
                     /psig="0.996003996003996"
                     /xcortree=2450
                     /SigmaFactorBS="cgcttgcgaaaaaaatacgggagaaaaagaaatttttcCTTT
                     GACAaatcttctttcattTATTAATATTTTATCTTGTGaactattattgaggaatgag
                     g"
                     /listShort="yhbI, yhbJ, yhcA, yhcB, yhcC"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             900794..901258
                     /gene="yhbI"
                     /locus_tag="BSU_08990"
                     /old_locus_tag="BSU08990"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 20011599; Product type
                     r: regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="putative transcriptional regulator (MarR
                     family)induced by acid stress"
                     /protein_id="NP_388780.1"
                     /db_xref="EnsemblGenomes-Gn:BSU08990"
                     /db_xref="EnsemblGenomes-Tr:CAB12727"
                     /db_xref="GOA:O31592"
                     /db_xref="InterPro:IPR000835"
                     /db_xref="InterPro:IPR036388"
                     /db_xref="InterPro:IPR036390"
                     /db_xref="SubtiList:BG13003"
                     /db_xref="UniProtKB/Swiss-Prot:O31592"
                     /translation="MTESERALLTFEQLFDTSRAIYKKQKKILEIVLEPFDITVLQYL
                     LMFKIHQSGSTPLSKLAMSLDLKPASVTRMTDILYKRQLMNRYDSPDDRRIVMIQLTE
                     EGEELIEKAAVQYAKMGAGLYQKLDTSQLQYLRKLAGSLTKLAEGCSEKSGN*"
                     /label="yhbI CDS"
     gene            900794..901258
                     /gene="yhbI"
                     /locus_tag="BSU_08990"
                     /old_locus_tag="BSU08990"
                     /label="yhbI gene"
     promotor_-35    901083..901089
                     /Source="Nicolas_upshift_promotors"
                     /id="U705"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp="0.94005994005994"
                     /psig="0.94005994005994"
                     /xcortree=270
                     /SigmaFactorBS="cagtccggatgaccgccgtatcgtcaTGATTCAgttaaccga
                     agaggGGGAAGAACTGATAGAAAAagccgctgtgcaatatgcaaaaatgggtgctggc
                     t"
                     /listShort="yhbJ, yhcA, yhcB, yhcC"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    901104..901122
                     /Source="Nicolas_upshift_promotors"
                     /id="U705"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp="0.94005994005994"
                     /psig="0.94005994005994"
                     /xcortree=270
                     /SigmaFactorBS="cagtccggatgaccgccgtatcgtcaTGATTCAgttaaccga
                     agaggGGGAAGAACTGATAGAAAAagccgctgtgcaatatgcaaaaatgggtgctggc
                     t"
                     /listShort="yhbJ, yhcA, yhcB, yhcC"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        901117
                     /Source="Nicolas_upshifts"
                     /id="U705"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp="0.94005994005994"
                     /psig="0.94005994005994"
                     /xcortree=270
                     /SigmaFactorBS="cagtccggatgaccgccgtatcgtcaTGATTCAgttaaccga
                     agaggGGGAAGAACTGATAGAAAAagccgctgtgcaatatgcaaaaatgggtgctggc
                     t"
                     /listShort="yhbJ, yhcA, yhcB, yhcC"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    901267..901273
                     /Source="Nicolas_upshift_promotors"
                     /id="U706"
                     /multdbtbs="-"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp="0.976023976023976"
                     /psig="0.976023976023976"
                     /xcortree=808
                     /SigmaFactorBS="gctgttcagaaaaaagcggtaattaaaaacttctCACATATt
                     ttcaccagctttCCGCAAAATGATagaggatgaaacgaaaggagaaaacaaaatgaac
                     a"
                     /listShort="yhbJ, yhcA, yhcB, yhcC"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    901287..901298
                     /Source="Nicolas_upshift_promotors"
                     /id="U706"
                     /multdbtbs="-"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp="0.976023976023976"
                     /psig="0.976023976023976"
                     /xcortree=808
                     /SigmaFactorBS="gctgttcagaaaaaagcggtaattaaaaacttctCACATATt
                     ttcaccagctttCCGCAAAATGATagaggatgaaacgaaaggagaaaacaaaatgaac
                     a"
                     /listShort="yhbJ, yhcA, yhcB, yhcC"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        901293
                     /Source="Nicolas_upshifts"
                     /id="U706"
                     /multdbtbs="-"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp="0.976023976023976"
                     /psig="0.976023976023976"
                     /xcortree=808
                     /SigmaFactorBS="gctgttcagaaaaaagcggtaattaaaaacttctCACATATt
                     ttcaccagctttCCGCAAAATGATagaggatgaaacgaaaggagaaaacaaaatgaac
                     a"
                     /listShort="yhbJ, yhcA, yhcB, yhcC"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             901294..901959
                     /gene="yhbJ"
                     /locus_tag="BSU_09000"
                     /old_locus_tag="BSU09000"
                     /function="16.1: Circulate"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 15849754, 16850406,
                     20011599; Product type m: membrane component"
                     /codon_start=1
                     /transl_table=11
                     /product="putative membrane fusion protein; putative
                     exporter subunit (benzoate transcriptome)"
                     /protein_id="NP_388781.1"
                     /db_xref="EnsemblGenomes-Gn:BSU09000"
                     /db_xref="EnsemblGenomes-Tr:CAB12728"
                     /db_xref="GOA:O31593"
                     /db_xref="InterPro:IPR011053"
                     /db_xref="SubtiList:BG13004"
                     /db_xref="UniProtKB/Swiss-Prot:O31593"
                     /translation="MIEDETKGENKMNRGRLILTNIIGLIVVLAIIAGGAYYYYQSTN
                     YVKTDEAKVAGDMAAITAPAAGKVSDWDLDEGKTVKKGDTVAKIKGEQTVDVKSIMDG
                     TIVKNEVKNGQTVQAGTTIAQTIDMDNLYITANIKETDIADIEVGNSVDVVVDGDPDT
                     TFDGTVEEIGYATNSTFDMLPSTNSSGNYTKVTQKVPVKISIKNPSDKVLPGMNASVK
                     ISE*"
                     /label="yhbJ CDS"
     gene            901294..901959
                     /gene="yhbJ"
                     /locus_tag="BSU_09000"
                     /old_locus_tag="BSU09000"
                     /label="yhbJ gene"
     CDS             902000..903598
                     /gene="yhcA"
                     /locus_tag="BSU_09010"
                     /old_locus_tag="BSU09010"
                     /function="16.1: Circulate"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 15849754, 16850406,
                     20011599; Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="putative exporter (benzoate transcriptome)"
                     /protein_id="NP_388782.1"
                     /db_xref="EnsemblGenomes-Gn:BSU09010"
                     /db_xref="EnsemblGenomes-Tr:CAB12729"
                     /db_xref="GOA:P54585"
                     /db_xref="InterPro:IPR004638"
                     /db_xref="InterPro:IPR011701"
                     /db_xref="InterPro:IPR020846"
                     /db_xref="InterPro:IPR036259"
                     /db_xref="SubtiList:BG11579"
                     /db_xref="UniProtKB/Swiss-Prot:P54585"
                     /translation="MATGKEKNAKNPMSLLIVLMAGLFLAILNQTLLNVAMPHLMTEF
                     GVSATTIQWLTTGYMLVNGVLIPLSAFLITRFGQRSLFLVAMFCFTLGTLVCGIAPNF
                     STMLIGRLIQAVGGGILQPLVMTTILLIFPPESRGKGMGIFGLAMMFAPAVGPTLSGW
                     IIEHYTWRIMFYGLVPIGAIVIIVAFFIFKNMVEPQKIKLDTLGAILSIVGFASLLYG
                     VSEAGSDGWTDPIVLSTVIIGAIAIVAFVVQQLRHDDPMLDFRVFKYDIFSLSSVINI
                     IITVALYTGMFLLPIYLQNLVGFTALQSGLLLLPGAIVMLIMSPISGILFDKFGPRPL
                     AIIGLLVTVVTTYQYTQLTIDTPYTHIMLIYSIRAFGMSLLMMPVMTAGMNQLPARLN
                     SHGTAMSNTLRQISGSIGTSLITTIYTNRTTFHYSQIADKTSTADPNFLHAFQNAVSN
                     LMVNMNVSYDTAKTYVYSHIYKHASLDSNVMGINDAFMWATLFCVAGLILSIFLRDVR
                     KDKLRKKKKEELSLLPAPKEAKES*"
                     /label="yhcA CDS"
     gene            902000..903598
                     /gene="yhcA"
                     /locus_tag="BSU_09010"
                     /old_locus_tag="BSU09010"
                     /label="yhcA gene"
     CDS             903621..904151
                     /gene="yhcB"
                     /locus_tag="BSU_09020"
                     /old_locus_tag="BSU09020"
                     /EC_number="1.6.5.-"
                     /function="16.8: Protect"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 2a: Function from experimental evidences
                     in other organisms; PubMedId: 15754243, 18041955,
                     17951395, 19665595, 20011599; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH:quinone oxidoreductase associated to
                     benzoate stress"
                     /protein_id="NP_388783.1"
                     /db_xref="EnsemblGenomes-Gn:BSU09020"
                     /db_xref="EnsemblGenomes-Tr:CAB12730"
                     /db_xref="GOA:P54586"
                     /db_xref="InterPro:IPR005025"
                     /db_xref="InterPro:IPR008254"
                     /db_xref="InterPro:IPR029039"
                     /db_xref="SubtiList:BG11580"
                     /db_xref="UniProtKB/Swiss-Prot:P54586"
                     /translation="MKIYVVYDSEGEHTKVLAEAIAEGARENDAAEVFIDHVDQADIR
                     KLKDMDAIIWGCPGHFGTISSGLKTWIDRLGYLWAEGELINKVGAVFCTTATTHGGLE
                     MTMHNLITPMFHQGMIVVGLPGNVPENALYGSYYGAGVTCPVDSDELMSEEGIQLGRA
                     LGRRVSQVTGNLTAGQ*"
                     /label="yhcB CDS"
     gene            903621..904151
                     /gene="yhcB"
                     /locus_tag="BSU_09020"
                     /old_locus_tag="BSU09020"
                     /label="yhcB gene"
     CDS             904164..904538
                     /gene="yhcC"
                     /locus_tag="BSU_09030"
                     /old_locus_tag="BSU09030"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 5: Unknown function"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical membrane protein"
                     /protein_id="NP_388784.1"
                     /db_xref="EnsemblGenomes-Gn:BSU09030"
                     /db_xref="EnsemblGenomes-Tr:CAB12731"
                     /db_xref="GOA:P54587"
                     /db_xref="SubtiList:BG11581"
                     /db_xref="UniProtKB/Swiss-Prot:P54587"
                     /translation="MAIIIAIIAAVIVIAALITFNVRNASPGPEKQEATDRIAPPEEE
                     KNEAHYPAEARAAEHTPSVVKNDSPKEKRDTMGDDIYRQALQKFKHSDEVHAEEEVTE
                     ESDKMQDRSYRDALLSMKNKKK*"
                     /label="yhcC CDS"
     gene            904164..904538
                     /gene="yhcC"
                     /locus_tag="BSU_09030"
                     /old_locus_tag="BSU09030"
                     /label="yhcC gene"
     downshifts      904527
                     /Source="Nicolas_upshifts"
                     /id="D467"
                     /incds=0
                     /nref=32
                     /ntot=145
                     /MaxReadThrough="1.78742"
                     /MaxDrop="5.9171"
                     /score="13.777309"
                     /energy="-14.4"
                     /TU="NA"
                     /idTUdmin="U704"
                     /TUdmin=0
                     /isTUend="TRUE"
                     /label="downshifts"
     CDS             904538..904693
                     /gene="yhcD"
                     /locus_tag="BSU_09040"
                     /old_locus_tag="BSU09040"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 5: Unknown function"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="NP_388785.1"
                     /db_xref="EnsemblGenomes-Gn:BSU09040"
                     /db_xref="EnsemblGenomes-Tr:CAB12732"
                     /db_xref="SubtiList:BG11582"
                     /db_xref="UniProtKB/Swiss-Prot:P54588"
                     /translation="MKKANPFTHAGLPFLLFPSIMFLSNKSMEYVVFHLDLVYYVTHT
                     PRIFSGR*"
                     /label="yhcD CDS"
     gene            904538..904693
                     /gene="yhcD"
                     /locus_tag="BSU_09040"
                     /old_locus_tag="BSU09040"
                     /label="yhcD gene"
     promotor_-35    904628..904634
                     /Source="Nicolas_upshift_promotors"
                     /id="U707"
                     /multdbtbs="-"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp="0.571428571428571"
                     /psig=1
                     /xcortree=2541
                     /SigmaFactorBS="tgtttttatcaaataaatccatggaatatGTTGTATtccacc
                     ttgatctaGTGTACTATGTTACTCATACaccgaggattttttccgggaggtaaagaca
                     t"
                     /listShort="yhcE, yhcF, yhcG, yhcH, yhcI"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    904649..904668
                     /Source="Nicolas_upshift_promotors"
                     /id="U707"
                     /multdbtbs="-"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp="0.571428571428571"
                     /psig=1
                     /xcortree=2541
                     /SigmaFactorBS="tgtttttatcaaataaatccatggaatatGTTGTATtccacc
                     ttgatctaGTGTACTATGTTACTCATACaccgaggattttttccgggaggtaaagaca
                     t"
                     /listShort="yhcE, yhcF, yhcG, yhcH, yhcI"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        904659
                     /Source="Nicolas_upshifts"
                     /id="U707"
                     /multdbtbs="-"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp="0.571428571428571"
                     /psig=1
                     /xcortree=2541
                     /SigmaFactorBS="tgtttttatcaaataaatccatggaatatGTTGTATtccacc
                     ttgatctaGTGTACTATGTTACTCATACaccgaggattttttccgggaggtaaagaca
                     t"
                     /listShort="yhcE, yhcF, yhcG, yhcH, yhcI"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             904698..905459
                     /gene="yhcE"
                     /locus_tag="BSU_09050"
                     /old_locus_tag="BSU09050"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 15849754, 16850406;
                     Product type m: membrane component"
                     /codon_start=1
                     /transl_table=11
                     /product="putative integral inner membrane orphan protein"
                     /protein_id="NP_388786.1"
                     /db_xref="EnsemblGenomes-Gn:BSU09050"
                     /db_xref="EnsemblGenomes-Tr:CAB12733"
                     /db_xref="GOA:P54589"
                     /db_xref="SubtiList:BG11583"
                     /db_xref="UniProtKB/Swiss-Prot:P54589"
                     /translation="MNSFLGLLKKDIKLSRMWLLVWICGIIFLLGTGHIIASRTKEPL
                     VIFGFFVAVAFFLLFLSPVFVFYHLRKEGKSQLWLYNPNGGLWLFSSKLAASLLYQFV
                     IQLALTAYGIWMYHMLSVKNLLEHQVDITSTVALLNMYGLISSLDMSVTVIVFWTVFH
                     SLRNWRGMRWAAMVLLVAMWLFFDEYIISPLVESQKHFWPVTVYCNFDFHFHNVWRLE
                     LKPIHLSVLGFPIAIVITFLLLIMASKLLDRKVEV*"
                     /label="yhcE CDS"
     gene            904698..905459
                     /gene="yhcE"
                     /locus_tag="BSU_09050"
                     /old_locus_tag="BSU09050"
                     /label="yhcE gene"
     promotor_-10    complement(905011..905029)
                     /Source="Nicolas_upshift_promotors"
                     /id="U708"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp=1
                     /psig=1
                     /xcortree=1187
                     /SigmaFactorBS="tatcaacttgatgctccagcagattttttacagagAGCATAt
                     gatacatccatatgCCATAGGCTGTTAATGCCAactgaatcacaaattgatagagcaa
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(905025)
                     /Source="Nicolas_upshifts"
                     /id="U708"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp=1
                     /psig=1
                     /xcortree=1187
                     /SigmaFactorBS="tatcaacttgatgctccagcagattttttacagagAGCATAt
                     gatacatccatatgCCATAGGCTGTTAATGCCAactgaatcacaaattgatagagcaa
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(905045..905050)
                     /Source="Nicolas_upshift_promotors"
                     /id="U708"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp=1
                     /psig=1
                     /xcortree=1187
                     /SigmaFactorBS="tatcaacttgatgctccagcagattttttacagagAGCATAt
                     gatacatccatatgCCATAGGCTGTTAATGCCAactgaatcacaaattgatagagcaa
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             905462..905827
                     /gene="yhcF"
                     /locus_tag="BSU_09060"
                     /old_locus_tag="BSU09060"
                     /function="16.3: Control"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; Product type r: regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="putative transcriptional regulator (GntR
                     family)"
                     /protein_id="NP_388787.1"
                     /db_xref="EnsemblGenomes-Gn:BSU09060"
                     /db_xref="EnsemblGenomes-Tr:CAB12734"
                     /db_xref="GOA:P54590"
                     /db_xref="InterPro:IPR000524"
                     /db_xref="InterPro:IPR036388"
                     /db_xref="InterPro:IPR036390"
                     /db_xref="SubtiList:BG11584"
                     /db_xref="UniProtKB/Swiss-Prot:P54590"
                     /translation="MDNQFQSSKPIYLQIADQIFYRLVRKELLPGDKLPSVREMAIQT
                     KVNPNTIQRTYSEMERLGIVETRRGQGTFIAEKAEIVDELKDKLTREVLEGFVKQMKE
                     LGLTKEEMLEGIKTFTEGG*"
                     /label="yhcF CDS"
     gene            905462..905827
                     /gene="yhcF"
                     /locus_tag="BSU_09060"
                     /old_locus_tag="BSU09060"
                     /label="yhcF gene"
     CDS             905829..906527
                     /gene="yhcG"
                     /locus_tag="BSU_09070"
                     /old_locus_tag="BSU09070"
                     /function="16.1: Circulate"
                     /function="16.8: Protect"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 15870467; Product type
                     t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="putative ABC transporter ATP-binding protein"
                     /protein_id="NP_388788.1"
                     /db_xref="EnsemblGenomes-Gn:BSU09070"
                     /db_xref="EnsemblGenomes-Tr:CAB12735"
                     /db_xref="GOA:P54591"
                     /db_xref="InterPro:IPR003439"
                     /db_xref="InterPro:IPR003593"
                     /db_xref="InterPro:IPR027417"
                     /db_xref="SubtiList:BG11585"
                     /db_xref="UniProtKB/Swiss-Prot:P54591"
                     /translation="MEIKLEHVSKKYGRHTAVNDVSITLSSGRIYGLIGPNGSGKSTT
                     LKMMAGLLFPTSGFVKVDEEQVTREMVRQTAYLTELDMFYPHFTVKDMVNFYQSQFPD
                     FHTEQVYKLLNEMQLNPEKKIKKLSKGNRGRLKIVLALARRADVILLDEPFSGLDPMV
                     RDSIVNSLVSYIDFEQQIVVIATHEIDEIETLLDEVIILANGEKVAQREVEDIREQEG
                     MSVLQWFKSKMEVC*"
                     /label="yhcG CDS"
     gene            905829..906527
                     /gene="yhcG"
                     /locus_tag="BSU_09070"
                     /old_locus_tag="BSU09070"
                     /label="yhcG gene"
     CDS             906544..907461
                     /gene="yhcH"
                     /locus_tag="BSU_09080"
                     /old_locus_tag="BSU09080"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 7476193, 15870467;
                     Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="putative ABC transporter (ATP-binding protein)"
                     /protein_id="NP_388789.1"
                     /db_xref="EnsemblGenomes-Gn:BSU09080"
                     /db_xref="EnsemblGenomes-Tr:CAB12736"
                     /db_xref="GOA:P54592"
                     /db_xref="InterPro:IPR003439"
                     /db_xref="InterPro:IPR003593"
                     /db_xref="InterPro:IPR017871"
                     /db_xref="InterPro:IPR027417"
                     /db_xref="SubtiList:BG11586"
                     /db_xref="UniProtKB/Swiss-Prot:P54592"
                     /translation="MKTVLELKNVTKNIRGRTIIDDLSFTIREGEVFGFLGPNGAGKT
                     TTIRMMVGLMKLSKGDVLICGQSITKEYAKAIKHIGAIVENPELYKFLSGYKNLQQFA
                     RMVKGVTKEKIDEVVELVGLTDRIHDKVKTYSLGMRQRLGLAQCLLHDPKVLILDEPT
                     NGLDPAGIREIRDHLKKLTRERGMAVIVSSHLLSEMELMCDRIAILQKGKLIDIQNVK
                     DENIDENDTYFFQVEQPSEAATVLNQYDLLSKTNGVEIKLAKEEVPAVIELLVMQQIR
                     IYEVKVITKSLEDRFLEMTGETKEEVQHA*"
                     /label="yhcH CDS"
     gene            906544..907461
                     /gene="yhcH"
                     /locus_tag="BSU_09080"
                     /old_locus_tag="BSU09080"
                     /label="yhcH gene"
     CDS             907454..908395
                     /gene="yhcI"
                     /locus_tag="BSU_09090"
                     /old_locus_tag="BSU09090"
                     /function="16.1: Circulate"
                     /function="16.8: Protect"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 15849754, 15870467,
                     16850406; Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="putative ABC transporter (permease)"
                     /protein_id="NP_388790.1"
                     /db_xref="EnsemblGenomes-Gn:BSU09090"
                     /db_xref="EnsemblGenomes-Tr:CAB12737"
                     /db_xref="GOA:P54593"
                     /db_xref="InterPro:IPR032688"
                     /db_xref="SubtiList:BG11587"
                     /db_xref="UniProtKB/Swiss-Prot:P54593"
                     /translation="MLNLIYNEWLKIFSRAGTWVMIGILGLTMVGFAFLANHFSAGES
                     NSHWKQELQAQNAELKKEIKEDPSLKDGYKETITLNDYRIEHNIPSDTGYTVWSYVTD
                     SANFTILTGLFTIIIAAGIVANEFNWGTIKLLMIRPLSRFQILMSKYITVLLFGLLLL
                     LILFIGSTLLGLIFFGTGGETAANIHLIYKDGHVIEQNMMGHLATTYLSESVSALMVA
                     TMAFMLSAVFRNSSLAVGFSIFLLVAGTTATAFIAAKFDWAKYILFANVDLTQYVDGT
                     PLIKGMTMTFSLVMLAIYFIIFLLLAFGIFMKRDIAN*"
                     /label="yhcI CDS"
     gene            907454..908395
                     /gene="yhcI"
                     /locus_tag="BSU_09090"
                     /old_locus_tag="BSU09090"
                     /label="yhcI gene"
     downshifts      908377
                     /Source="Nicolas_upshifts"
                     /id="D468"
                     /incds=0
                     /nref=43
                     /ntot=186
                     /MaxReadThrough="2.67567"
                     /MaxDrop="4.46232"
                     /score="20.0218504"
                     /energy="-13.6"
                     /TU="NA"
                     /idTUdmin="U707"
                     /TUdmin=0
                     /isTUend="TRUE"
                     /label="downshifts"
     CDS             complement(908487..908690)
                     /gene="cspB"
                     /locus_tag="BSU_09100"
                     /old_locus_tag="BSU09100"
                     /function="16.8: Protect"
                     /experiment="publication(s) with functional evidences,
                     PMID:12493834, 16352840, 22128343, 25851716"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 12493834, 16352840,
                     22128343, 25851716; Product type f: factor"
                     /codon_start=1
                     /transl_table=11
                     /product="major cold-shock protein, RNA helicase
                     co-factor, RNA co-chaperone"
                     /protein_id="NP_388791.1"
                     /db_xref="EnsemblGenomes-Gn:BSU09100"
                     /db_xref="EnsemblGenomes-Tr:CAB12738"
                     /db_xref="GOA:P32081"
                     /db_xref="InterPro:IPR002059"
                     /db_xref="InterPro:IPR011129"
                     /db_xref="InterPro:IPR012156"
                     /db_xref="InterPro:IPR012340"
                     /db_xref="InterPro:IPR019844"
                     /db_xref="PDB:1CSP"
                     /db_xref="PDB:1CSQ"
                     /db_xref="PDB:1NMF"
                     /db_xref="PDB:1NMG"
                     /db_xref="PDB:2ES2"
                     /db_xref="PDB:2F52"
                     /db_xref="PDB:2I5L"
                     /db_xref="PDB:2I5M"
                     /db_xref="PDB:3PF4"
                     /db_xref="PDB:3PF5"
                     /db_xref="SubtiList:BG10824"
                     /db_xref="UniProtKB/Swiss-Prot:P32081"
                     /translation="MLEGKVKWFNSEKGFGFIEVEGQDDVFVHFSAIQGEGFKTLEEG
                     QAVSFEIVEGNRGPQAANVTKEA*"
                     /label="cspB CDS"
     gene            complement(908487..908690)
                     /gene="cspB"
                     /locus_tag="BSU_09100"
                     /old_locus_tag="BSU09100"
                     /label="cspB gene"
     downshifts      complement(908501)
                     /Source="Nicolas_upshifts"
                     /id="D469"
                     /incds=0
                     /nref=169
                     /ntot=281
                     /MaxReadThrough="5.28215"
                     /MaxDrop="9.14889"
                     /score="33.2405587"
                     /energy="-13.1"
                     /TU="U710"
                     /idTUdmin="U710"
                     /TUdmin="-48"
                     /isTUend="FALSE"
                     /label="downshifts"
     S_feature       complement(908691..908818)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_984466_984593_c"
                     /HighExp="BC, C90, GM 15, BI, T-1.10H, UNK1, S1, Sw, nit,
                     G/S"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig=1
                     /TUlongSig="SigA"
                     /TUlongPSig="0.999"
                     /label="S315"
     misc_feature    908778..908789
                     /Source="Nicolas_upshift_promotors"
                     /id="U709"
                     /multdbtbs="-"
                     /comp="M15"
                     /sig="Sig-"
                     /pcomp="0.618381618381618"
                     /psig="0.098901098901099"
                     /xcortree=713
                     /SigmaFactorBS="ttgctcttaacaaactttcaagacgaaaactcttacaaaact
                     tTCTTCTTAAAGAtagttcgaacaaaaataattacctttactctaccagtaatcttca
                     g"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_single_box"
                     /note="Geneious type: promotor_single_box"
     upshifts        908795
                     /Source="Nicolas_upshifts"
                     /id="U709"
                     /multdbtbs="-"
                     /comp="M15"
                     /sig="Sig-"
                     /pcomp="0.618381618381618"
                     /psig="0.098901098901099"
                     /xcortree=713
                     /SigmaFactorBS="ttgctcttaacaaactttcaagacgaaaactcttacaaaact
                     tTCTTCTTAAAGAtagttcgaacaaaaataattacctttactctaccagtaatcttca
                     g"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-10    complement(908807..908826)
                     /Source="Nicolas_upshift_promotors"
                     /id="U710"
                     /multdbtbs="SigA"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.32967032967033"
                     /psig=1
                     /xcortree=2182
                     /SigmaFactorBS="tatggtattttccgaaaaaaatttcaataagcaGTTGTTttt
                     tctgaagattACTGGTAGAGTAAAGGTAATtatttttgttcgaactatctttaagaag
                     a"
                     /listShort="S315, cspB"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(908818)
                     /Source="Nicolas_upshifts"
                     /id="U710"
                     /multdbtbs="SigA"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.32967032967033"
                     /psig=1
                     /xcortree=2182
                     /SigmaFactorBS="tatggtattttccgaaaaaaatttcaataagcaGTTGTTttt
                     tctgaagattACTGGTAGAGTAAAGGTAATtatttttgttcgaactatctttaagaag
                     a"
                     /listShort="S315, cspB"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     S_feature       complement(908820..909958)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_984595_985733_c"
                     /HighExp="C30, G180, G150, Oxctl, G135, Paraq, HPh, LPh,
                     dia0, Lbexp"
                     /AntisenseName="yhcJ"
                     /AntisenseCor="0.25433958616302499"
                     /AntisenseRegPval="-4.5999999999999996"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.999"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S316"
     promotor_-35    complement(908840..908845)
                     /Source="Nicolas_upshift_promotors"
                     /id="U710"
                     /multdbtbs="SigA"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.32967032967033"
                     /psig=1
                     /xcortree=2182
                     /SigmaFactorBS="tatggtattttccgaaaaaaatttcaataagcaGTTGTTttt
                     tctgaagattACTGGTAGAGTAAAGGTAATtatttttgttcgaactatctttaagaag
                     a"
                     /listShort="S315, cspB"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-35    908985..908992
                     /Source="Nicolas_upshift_promotors"
                     /id="U711"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.386613386613387"
                     /psig="0.997002997002997"
                     /xcortree=1871
                     /SigmaFactorBS="attccttcattttgggaagataagtaataggAATTGACAacc
                     ttattggatatGAGTAAGGTAAAAGTTAATcaatattacaaatgacaacgtttatcaa
                     c"
                     /listShort="S317, yhcJ"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    909007..909025
                     /Source="Nicolas_upshift_promotors"
                     /id="U711"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.386613386613387"
                     /psig="0.997002997002997"
                     /xcortree=1871
                     /SigmaFactorBS="attccttcattttgggaagataagtaataggAATTGACAacc
                     ttattggatatGAGTAAGGTAAAAGTTAATcaatattacaaatgacaacgtttatcaa
                     c"
                     /listShort="S317, yhcJ"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        909014
                     /Source="Nicolas_upshifts"
                     /id="U711"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.386613386613387"
                     /psig="0.997002997002997"
                     /xcortree=1871
                     /SigmaFactorBS="attccttcattttgggaagataagtaataggAATTGACAacc
                     ttattggatatGAGTAAGGTAAAAGTTAATcaatattacaaatgacaacgtttatcaa
                     c"
                     /listShort="S317, yhcJ"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     S_feature       909015..909125
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_984790_984900"
                     /HighExp="Diami, dia15, dia5, H2O2, Salt, C90, Paraq,
                     UNK1, T-4.40H, nit"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.997"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S317"
     CDS             909126..909956
                     /gene="yhcJ"
                     /locus_tag="BSU_09110"
                     /old_locus_tag="BSU09110"
                     /function="7: Transport and binding proteins"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; Product type lp: lipoprotein"
                     /codon_start=1
                     /transl_table=11
                     /product="putative ABC transporter (binding lipoprotein)"
                     /protein_id="NP_388792.2"
                     /db_xref="EnsemblGenomes-Gn:BSU09110"
                     /db_xref="EnsemblGenomes-Tr:CAB12739"
                     /db_xref="GOA:P54594"
                     /db_xref="InterPro:IPR004872"
                     /db_xref="SubtiList:BG11588"
                     /db_xref="UniProtKB/Swiss-Prot:P54594"
                     /translation="MKKWLICSFVLVLLVSFTACSPSAEHESIKIGIAESDGAIWNYI
                     AQKAEEAGLDIQLIPFSDYAESDIALANKEIDANAFQTISYFQSFTEKYKLNLAPLGT
                     TYITPMGIYSKRYERIRDISRGAVVSVPDKAFDFGRALTVLQEAGLLTLKNGFNGTGS
                     VDMIKDNPRHLKLKAVRQQDAVSGADVFVMKPSEAKKAGLNPKKHTLKSGGLMSEEEM
                     NLIVVRAEDQDREALQTILELYQADDTAAFIEKEYQGDLVPAFLPLKRLSDWKNEFEH
                     *"
                     /label="yhcJ CDS"
     gene            909126..909956
                     /gene="yhcJ"
                     /locus_tag="BSU_09110"
                     /old_locus_tag="BSU09110"
                     /label="yhcJ gene"
     downshifts      909915
                     /Source="Nicolas_upshifts"
                     /id="D470"
                     /incds=0
                     /nref=38
                     /ntot=203
                     /MaxReadThrough="2.83059"
                     /MaxDrop="3.90173"
                     /score="-4.94928928"
                     /energy="-7.3"
                     /TU="NA"
                     /idTUdmin="U711"
                     /TUdmin="-3"
                     /isTUend="TRUE"
                     /label="downshifts"
     CDS             complement(909959..911038)
                     /gene="dgcK"
                     /locus_tag="BSU_09120"
                     /old_locus_tag="BSU09120"
                     /EC_number="2.7.7.65"
                     /function="16.3: Control"
                     /function="16.1: Circulate"
                     /function="16.8: Protect"
                     /experiment="publication(s) with functional evidences,
                     PMID:23893111"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 23893111; Product type e:
                     enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="diguanylate cyclase"
                     /protein_id="NP_388793.1"
                     /db_xref="EnsemblGenomes-Gn:BSU09120"
                     /db_xref="EnsemblGenomes-Tr:CAB12740"
                     /db_xref="GOA:P54595"
                     /db_xref="InterPro:IPR000160"
                     /db_xref="InterPro:IPR011620"
                     /db_xref="InterPro:IPR029787"
                     /db_xref="SubtiList:BG11589"
                     /db_xref="UniProtKB/Swiss-Prot:P54595"
                     /translation="MLKELFVNLTILITFNYLFTHLFKERLVHKKDSISFQAVKGLAC
                     GLLGVILMVFGFTYQHSIIDLRNIPIMIAALYGGWVSTATALAMITAGRLLITMNTSA
                     LYSVIIICIAAIPSLIVSRRKKVQLKHAFYLLIITNSLISFSFYFLIDLHSYELHLYF
                     WIISIAGGMLSLYIIDHETNAHLLFKQYKFQAHFDFLTGVYNRRKFEETTKALYQQAA
                     DTPHFQFALIYMDIDHFKTINDQYGHHEGDQVLKELGLRLKQTIRNTDPAARIGGEEF
                     AVLLPNCSLDKAARIAERIRSTVSDAPIVLTNGDELSVTISLGAAHYPNNTEQPGSLP
                     ILADQMLYKAKETGRNRVCFSEKKE*"
                     /label="dgcK CDS"
     gene            complement(909959..911038)
                     /gene="dgcK"
                     /locus_tag="BSU_09120"
                     /old_locus_tag="BSU09120"
                     /label="dgcK gene"
     promotor_-10    complement(911048..911067)
                     /Source="Nicolas_upshift_promotors"
                     /id="U712"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.988011988011988"
                     /psig="0.999000999001"
                     /xcortree=2608
                     /SigmaFactorBS="tatcaattcaagtaaaaaaaccttatataatgccttttttgt
                     TCTTTtctttcccttccatcTTTAGTACCTTATATAAGGGtgataatatttgctgaaa
                     g"
                     /listShort="yhcK, S316"
                     /listLong="S315, cspB"
                     /label="promotor_-10"
     upshifts        complement(911069)
                     /Source="Nicolas_upshifts"
                     /id="U712"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.988011988011988"
                     /psig="0.999000999001"
                     /xcortree=2608
                     /SigmaFactorBS="tatcaattcaagtaaaaaaaccttatataatgccttttttgt
                     TCTTTtctttcccttccatcTTTAGTACCTTATATAAGGGtgataatatttgctgaaa
                     g"
                     /listShort="yhcK, S316"
                     /listLong="S315, cspB"
                     /label="upshifts"
     promotor_-35    complement(911083..911087)
                     /Source="Nicolas_upshift_promotors"
                     /id="U712"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.988011988011988"
                     /psig="0.999000999001"
                     /xcortree=2608
                     /SigmaFactorBS="tatcaattcaagtaaaaaaaccttatataatgccttttttgt
                     TCTTTtctttcccttccatcTTTAGTACCTTATATAAGGGtgataatatttgctgaaa
                     g"
                     /listShort="yhcK, S316"
                     /listLong="S315, cspB"
                     /label="promotor_-35"
     promotor_-35    911145..911152
                     /Source="Nicolas_upshift_promotors"
                     /id="U713"
                     /multdbtbs="SigA"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.651348651348651"
                     /psig=1
                     /xcortree=1745
                     /SigmaFactorBS="tttttacttgaattgataagttaaaataattcgCACTTGACc
                     catcggaattagTGTAATATAGTAAATGAGAAaatttgaagggagagtttacctgctt
                     t"
                     /listShort="tcyP"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    911166..911185
                     /Source="Nicolas_upshift_promotors"
                     /id="U713"
                     /multdbtbs="SigA"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.651348651348651"
                     /psig=1
                     /xcortree=1745
                     /SigmaFactorBS="tttttacttgaattgataagttaaaataattcgCACTTGACc
                     catcggaattagTGTAATATAGTAAATGAGAAaatttgaagggagagtttacctgctt
                     t"
                     /listShort="tcyP"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        911172
                     /Source="Nicolas_upshifts"
                     /id="U713"
                     /multdbtbs="SigA"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.651348651348651"
                     /psig=1
                     /xcortree=1745
                     /SigmaFactorBS="tttttacttgaattgataagttaaaataattcgCACTTGACc
                     catcggaattagTGTAATATAGTAAATGAGAAaatttgaagggagagtttacctgctt
                     t"
                     /listShort="tcyP"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             911211..912602
                     /gene="tcyP"
                     /locus_tag="BSU_09130"
                     /old_locus_tag="BSU09130"
                     /function="16.1: Circulate"
                     /experiment="publication(s) with functional evidences,
                     PMID:12193636, 15262924, 15849754, 16513748, 16850406,
                     19508281"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 12193636, 15262924,
                     15849754, 16513748, 16850406, 19508281; Product type t :
                     transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="(sodium)-cystine symporter"
                     /protein_id="NP_388794.1"
                     /db_xref="EnsemblGenomes-Gn:BSU09130"
                     /db_xref="EnsemblGenomes-Tr:CAB12741"
                     /db_xref="GOA:P54596"
                     /db_xref="InterPro:IPR001991"
                     /db_xref="InterPro:IPR036458"
                     /db_xref="SubtiList:BG11590"
                     /db_xref="UniProtKB/Swiss-Prot:P54596"
                     /translation="METLLVVLHVFILFLLILGLFVMQKKHVSFSKRVFTALGLGIVF
                     GFALQLIYGPTSNIVIQTADWFNIAGGGYVKLLQMVVMPLVFISILGAFTKLKLTKNL
                     GKISGLIIGILVATTAVAAAVGIASALSFDLQAIQVDQGSTELSRGQELQQKSEDMTA
                     KTLPQQIVELLPGNPFLDFTGARPTSTIAVVIFAAFLGVAFLGVKHKQPEQAETFKKL
                     VDAVYAIVMRVVTLILRLTPYGVLAIMTKTIATSDLDSILKLGMFVIASYAALITMFI
                     IHLLLLTFSGLNPVIYLKKAVPVLVFAFTSRSSAGALPLNIKTQRSMGVPEGIANFAG
                     SFGLSIGQNGCAGIYPAMLAMMIAPTVGQNPFDPVFIITVIAVVAISSFGVAGVGGGA
                     TFAALLVLSSLNMPVALAGLLISIEPLIDMGRTALNVSGSMTSGLITSKVTKEIDQGA
                     FHDQSRVIEAEEA*"
                     /label="tcyP CDS"
     gene            911211..912602
                     /gene="tcyP"
                     /locus_tag="BSU_09130"
                     /old_locus_tag="BSU09130"
                     /label="tcyP gene"
     S_feature       complement(912238..912641)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_988013_988416_c"
                     /HighExp="S8, S6, Etha, S5, S7, S4, ferm, nit, Salt, S3"
                     /AntisenseName="tcyP"
                     /AntisenseCor="-0.40132140065468203"
                     /AntisenseRegPval="-11.1"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigB"
                     /TUshortPSig="0.96"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S318"
     downshifts      912581
                     /Source="Nicolas_upshifts"
                     /id="D471"
                     /incds=0
                     /nref=58
                     /ntot=164
                     /MaxReadThrough="2.37899"
                     /MaxDrop="5.34563"
                     /score="19.9118074"
                     /energy="-12.8"
                     /TU="NA"
                     /idTUdmin="U713"
                     /TUdmin="-21"
                     /isTUend="TRUE"
                     /label="downshifts"
     CDS             complement(912642..913097)
                     /gene="yhcM"
                     /locus_tag="BSU_09140"
                     /old_locus_tag="BSU09140"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms; PubMedId: 21625606"
                     /codon_start=1
                     /transl_table=11
                     /product="expressed protein of unknown function"
                     /protein_id="NP_388795.1"
                     /db_xref="EnsemblGenomes-Gn:BSU09140"
                     /db_xref="EnsemblGenomes-Tr:CAB12742"
                     /db_xref="SubtiList:BG11591"
                     /db_xref="UniProtKB/Swiss-Prot:P54597"
                     /translation="MLFNQRRGISPAALIIGSTMLITALSPQIRQRISGFITGQMNRR
                     NSENNTFDASNVGNMVKQAFSGSSGSSGDNQDRSQHQSQRQNGRQHQHAGQQQPQHQH
                     TQSQTRQTETAAKKRQPHYAEPIHFEQNAMNVMDDNTMMEMLEDLEPGR*"
                     /label="yhcM CDS"
     gene            complement(912642..913097)
                     /gene="yhcM"
                     /locus_tag="BSU_09140"
                     /old_locus_tag="BSU09140"
                     /label="yhcM gene"
     promotor_-10    complement(913112..913130)
                     /Source="Nicolas_upshift_promotors"
                     /id="U714"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp="0.96003996003996"
                     /psig="0.96003996003996"
                     /xcortree=733
                     /SigmaFactorBS="tttaattatgcatgcaaatctggaggaaatgctttcccggga
                     aatataaCGGTTAAtttgtctaacgaggGGGAAAATATGAATACACTgcaaaggaggg
                     a"
                     /listShort="yhcM, S318"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(913140)
                     /Source="Nicolas_upshifts"
                     /id="U714"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp="0.96003996003996"
                     /psig="0.96003996003996"
                     /xcortree=733
                     /SigmaFactorBS="tttaattatgcatgcaaatctggaggaaatgctttcccggga
                     aatataaCGGTTAAtttgtctaacgaggGGGAAAATATGAATACACTgcaaaggaggg
                     a"
                     /listShort="yhcM, S318"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(913145..913151)
                     /Source="Nicolas_upshift_promotors"
                     /id="U714"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp="0.96003996003996"
                     /psig="0.96003996003996"
                     /xcortree=733
                     /SigmaFactorBS="tttaattatgcatgcaaatctggaggaaatgctttcccggga
                     aatataaCGGTTAAtttgtctaacgaggGGGAAAATATGAATACACTgcaaaggaggg
                     a"
                     /listShort="yhcM, S318"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-35    913189..913195
                     /Source="Nicolas_upshift_promotors"
                     /id="U715"
                     /multdbtbs="SigF,SigG"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp=1
                     /psig=1
                     /xcortree=835
                     /SigmaFactorBS="tatatttcccgggaaagcatttcctccagatttgcaTGCATA
                     AttaaagccagttaGAAAAACCTATAagtaaagtgataaaggaggaattcacatgttt
                     g"
                     /listShort="yhcN"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    913209..913220
                     /Source="Nicolas_upshift_promotors"
                     /id="U715"
                     /multdbtbs="SigF,SigG"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp=1
                     /psig=1
                     /xcortree=835
                     /SigmaFactorBS="tatatttcccgggaaagcatttcctccagatttgcaTGCATA
                     AttaaagccagttaGAAAAACCTATAagtaaagtgataaaggaggaattcacatgttt
                     g"
                     /listShort="yhcN"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        913213
                     /Source="Nicolas_upshifts"
                     /id="U715"
                     /multdbtbs="SigF,SigG"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp=1
                     /psig=1
                     /xcortree=835
                     /SigmaFactorBS="tatatttcccgggaaagcatttcctccagatttgcaTGCATA
                     AttaaagccagttaGAAAAACCTATAagtaaagtgataaaggaggaattcacatgttt
                     g"
                     /listShort="yhcN"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             913247..913816
                     /gene="yhcN"
                     /locus_tag="BSU_09150"
                     /old_locus_tag="BSU09150"
                     /function="16.5: Explore"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 9611260, 28333204;
                     Product type lp: lipoprotein"
                     /codon_start=1
                     /transl_table=11
                     /product="putative germination lipoprotein"
                     /protein_id="NP_388796.2"
                     /db_xref="EnsemblGenomes-Gn:BSU09150"
                     /db_xref="EnsemblGenomes-Tr:CAB12743"
                     /db_xref="GOA:P54598"
                     /db_xref="InterPro:IPR014247"
                     /db_xref="InterPro:IPR019076"
                     /db_xref="SubtiList:BG11592"
                     /db_xref="UniProtKB/Swiss-Prot:P54598"
                     /translation="MFGKKQVLASVLLIPLLMTGCGVADQGEGRRDNNDVRNVNYRNP
                     ANDDMRNVNNRDNVDNNVNDNVNNNRVNDDNNNDRKLEVADEAADKVTDLKEVKHADI
                     IVAGNQAYVAVVLTNGNKGAVENNLKKKIAKKVRSTDKNIDNVYVSANPDFVERMQGY
                     GKRIQNGDPIAGLFDEFTQTVQRVFPNAE*"
                     /label="yhcN CDS"
     gene            913247..913816
                     /gene="yhcN"
                     /locus_tag="BSU_09150"
                     /old_locus_tag="BSU09150"
                     /label="yhcN gene"
     promotor_-35    913443..913449
                     /Source="Nicolas_upshift_promotors"
                     /id="U716"
                     /multdbtbs="-"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp="0.634365634365634"
                     /psig="0.634365634365634"
                     /xcortree=783
                     /SigmaFactorBS="gtaaacaatcgggataacgttgacaacaatgttaatgataat
                     gTCAATAAcaatcgtgtaaatGACGATAATAACaacgaccgaaaacttgaggttgctg
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     upshifts        913460
                     /Source="Nicolas_upshifts"
                     /id="U716"
                     /multdbtbs="-"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp="0.634365634365634"
                     /psig="0.634365634365634"
                     /xcortree=783
                     /SigmaFactorBS="gtaaacaatcgggataacgttgacaacaatgttaatgataat
                     gTCAATAAcaatcgtgtaaatGACGATAATAACaacgaccgaaaacttgaggttgctg
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-10    913463..913474
                     /Source="Nicolas_upshift_promotors"
                     /id="U716"
                     /multdbtbs="-"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp="0.634365634365634"
                     /psig="0.634365634365634"
                     /xcortree=783
                     /SigmaFactorBS="gtaaacaatcgggataacgttgacaacaatgttaatgataat
                     gTCAATAAcaatcgtgtaaatGACGATAATAACaacgaccgaaaacttgaggttgctg
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     downshifts      913791
                     /Source="Nicolas_upshifts"
                     /id="D472"
                     /incds=0
                     /nref=26
                     /ntot=183
                     /MaxReadThrough="1.84697"
                     /MaxDrop="7.80159"
                     /score="33.0647397"
                     /energy="-12.9"
                     /TU="NA"
                     /idTUdmin="U715"
                     /TUdmin="-21"
                     /isTUend="TRUE"
                     /label="downshifts"
     promotor_-35    913859..913868
                     /Source="Nicolas_upshift_promotors"
                     /id="U717"
                     /multdbtbs="SigE,SigK"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp=1
                     /psig=1
                     /xcortree=1355
                     /SigmaFactorBS="caatttgtgcggctttttctttgcgttAATGACACACtgcga
                     actcaggcTGCATAGAGTAAAAATAAAAaggtacaagacggaccggctcagggaggga
                     g"
                     /listShort="yhcO"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    913882..913901
                     /Source="Nicolas_upshift_promotors"
                     /id="U717"
                     /multdbtbs="SigE,SigK"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp=1
                     /psig=1
                     /xcortree=1355
                     /SigmaFactorBS="caatttgtgcggctttttctttgcgttAATGACACACtgcga
                     actcaggcTGCATAGAGTAAAAATAAAAaggtacaagacggaccggctcagggaggga
                     g"
                     /listShort="yhcO"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        913892
                     /Source="Nicolas_upshifts"
                     /id="U717"
                     /multdbtbs="SigE,SigK"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp=1
                     /psig=1
                     /xcortree=1355
                     /SigmaFactorBS="caatttgtgcggctttttctttgcgttAATGACACACtgcga
                     actcaggcTGCATAGAGTAAAAATAAAAaggtacaagacggaccggctcagggaggga
                     g"
                     /listShort="yhcO"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             913937..914905
                     /gene="yhcO"
                     /locus_tag="BSU_09165"
                     /old_locus_tag="BSU09165"
                     /function="18: Unknown function"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms"
                     /codon_start=1
                     /transl_table=11
                     /product="putative exported protein (sporulation
                     germination island)"
                     /protein_id="NP_388797.2"
                     /db_xref="EnsemblGenomes-Gn:BSU09165"
                     /db_xref="EnsemblGenomes-Tr:CAB12744"
                     /db_xref="SubtiList:BG11593"
                     /db_xref="UniProtKB/Swiss-Prot:P54599"
                     /translation="MRDGIGKRAASALFLCGVLVMLAVSSAIVSSAMYILSFPGQASG
                     ITKEQVTKHMKKESFKQADIYYTSKEKSLLPLTKETLEYAVSINQIMIGYSNQKPIDI
                     IFFPNEKQMEAYSGLLDVVGFYSEREQLIGLLPEEKKKLLEGDEVAVYLYQRLLIHEY
                     SHHAFHQKLKELETDPDEFPLWFHEGLSEWIANYELLIDPITFSVVPFDRLQTDRDWQ
                     EARAEYDTDVYLQSFYMIDELTDKYGKDIISEMIKETAKKGDFEKGFKSATKESLDQF
                     EKDFKKKFEKNSAALDSIYPMPLLLVKSLLTHSALCRRHLSLGRGE*"
                     /label="yhcO CDS"
     gene            913937..914905
                     /gene="yhcO"
                     /locus_tag="BSU_09165"
                     /old_locus_tag="BSU09165"
                     /label="yhcO gene"
     downshifts      914781
                     /Source="Nicolas_upshifts"
                     /id="D473"
                     /incds=1
                     /nref=28
                     /ntot=62
                     /MaxReadThrough="1.51621"
                     /MaxDrop="5.75619"
                     /score="6.21571271"
                     /energy="-16.1"
                     /TU="NA"
                     /idTUdmin="U717"
                     /TUdmin="-1"
                     /isTUend="TRUE"
                     /label="downshifts"
     CDS             complement(914837..915490)
                     /gene="yhcQ"
                     /locus_tag="BSU_09180"
                     /old_locus_tag="BSU09180"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; Product type s: structure"
                     /codon_start=1
                     /transl_table=11
                     /product="putative spore coat protein"
                     /protein_id="NP_388799.1"
                     /db_xref="EnsemblGenomes-Gn:BSU09180"
                     /db_xref="EnsemblGenomes-Tr:CAB12746"
                     /db_xref="GOA:P54601"
                     /db_xref="InterPro:IPR012347"
                     /db_xref="InterPro:IPR012851"
                     /db_xref="SubtiList:BG11595"
                     /db_xref="UniProtKB/Swiss-Prot:P54601"
                     /translation="MDQFNQQQQSQMNKGIPGKPHKNHGGHEMFDMHEVLSGTLTVLD
                     QFMMLRQFCKDQELLNILDRQHQFITSQYNITAECFKTGSEPSQKTATYMMKEDNQTV
                     YGMQPSQPKKPVQSMNDIDDSIISRQMLCAIKAQASMLTMASLEMTNPAVRRVLSAQI
                     QEYVEMAFEIFLYQNKHGYYQVPQLDAQDMEQLRNSFAPAQGQMPPTQGGMGQQGLH*
                     "
                     /label="yhcQ CDS"
     gene            complement(914837..915490)
                     /gene="yhcQ"
                     /locus_tag="BSU_09180"
                     /old_locus_tag="BSU09180"
                     /label="yhcQ gene"
     downshifts      complement(914854)
                     /Source="Nicolas_upshifts"
                     /id="D474"
                     /incds=0
                     /nref=15
                     /ntot=57
                     /MaxReadThrough="4.13099"
                     /MaxDrop="4.95733"
                     /score="8.67086892"
                     /energy="-12.9"
                     /TU="U718"
                     /idTUdmin="U718"
                     /TUdmin="-546"
                     /isTUend="FALSE"
                     /label="downshifts"
     promotor_-10    complement(915521..915532)
                     /Source="Nicolas_upshift_promotors"
                     /id="U718"
                     /multdbtbs="SigG"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp=1
                     /psig=1
                     /xcortree=828
                     /SigmaFactorBS="acagacagcatataattcctttcaggcttcTGCATAAtacac
                     ggcagactgACACAAAATACAgctgatctgaaaaaaaaggaggaattcggtttggatc
                     a"
                     /listShort="yhcQ"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(915523)
                     /Source="Nicolas_upshifts"
                     /id="U718"
                     /multdbtbs="SigG"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp=1
                     /psig=1
                     /xcortree=828
                     /SigmaFactorBS="acagacagcatataattcctttcaggcttcTGCATAAtacac
                     ggcagactgACACAAAATACAgctgatctgaaaaaaaaggaggaattcggtttggatc
                     a"
                     /listShort="yhcQ"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(915547..915553)
                     /Source="Nicolas_upshift_promotors"
                     /id="U718"
                     /multdbtbs="SigG"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp=1
                     /psig=1
                     /xcortree=828
                     /SigmaFactorBS="acagacagcatataattcctttcaggcttcTGCATAAtacac
                     ggcagactgACACAAAATACAgctgatctgaaaaaaaaggaggaattcggtttggatc
                     a"
                     /listShort="yhcQ"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-35    915562..915570
                     /Source="Nicolas_upshift_promotors"
                     /id="U719"
                     /multdbtbs="-"
                     /comp="M1"
                     /sig="SigH"
                     /pcomp=1
                     /psig=1
                     /xcortree=543
                     /SigmaFactorBS="tctgccgtgtattatgcagaagcctgAAAGGAATTatatgct
                     gtcTGTCGAAATGATAAGCAGAcaaaatcgttgtcattatgtgtataagggaggaaat
                     a"
                     /listShort="yhcR, yhcS"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             915573..919226
                     /gene="mncR"
                     /locus_tag="BSU_09190"
                     /old_locus_tag="BSU09190"
                     /EC_number="3.1.-.-"
                     /function="16.11: Scavenge (Catabolism)"
                     /function="16.6: Maintain"
                     /experiment="publication(s) with functional evidences,
                     PMID:15292138, 21800427, 22020651"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 15292138, 21800427,
                     22020651; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="non specific extracellular Ca2+-dependent
                     endonuclease cleaving RNA and DNA"
                     /protein_id="NP_388800.1"
                     /db_xref="EnsemblGenomes-Gn:BSU09190"
                     /db_xref="EnsemblGenomes-Tr:CAB12747"
                     /db_xref="GOA:P54602"
                     /db_xref="InterPro:IPR004843"
                     /db_xref="InterPro:IPR006146"
                     /db_xref="InterPro:IPR006179"
                     /db_xref="InterPro:IPR008334"
                     /db_xref="InterPro:IPR012340"
                     /db_xref="InterPro:IPR016071"
                     /db_xref="InterPro:IPR019948"
                     /db_xref="InterPro:IPR029052"
                     /db_xref="InterPro:IPR035437"
                     /db_xref="InterPro:IPR035451"
                     /db_xref="InterPro:IPR036907"
                     /db_xref="SubtiList:BG11596"
                     /db_xref="UniProtKB/Swiss-Prot:P54602"
                     /translation="MLSVEMISRQNRCHYVYKGGNMMRRILHIVLITALMFLNVMYTF
                     EAVKAAEPQQPISIEKAIQQKEGQALVEGYAVGQAVSPQHYKLTSPFSNDYNVALADR
                     KNKTSPEHILPVQIPSAFRSQFGLQTNPLLLGKKITVQGKLENYFNTTGLKNVQSMNV
                     TDDTKTPPAEQQVTINEARGRLNEEVTIKGIITADQNAIGGGKLSTFLQDETGGINIY
                     SPSPEQFPELKEGMDVTVTGKITSYQGLKEIVPNSSGIKINQSNQSLPAPKHLTINEL
                     INGSLGDQYEGRLVKLTAFVSSIPSSPAGGGYNVTMIDDDHHAMTLRVMNETGVINEL
                     DEGKWYEFTGVLSRYQTFQLLPRKSADLKLLEEQPAPPSAEGEYEGIVDRVVDGDTIH
                     LKSPVLGTTKIRFVNVDAPETYHTPKNDADENQLRFGKKASDYLKTVLSPGDKITVKV
                     GSEAKDSYGRLLGQVITESGSNVNLELVKNGYAPTYFIWPVDNEEDYQQFQAAVAAAK
                     KDQKGIWNENDPLMEMPFEFRAREQGKGLTRYVGDSSNKTYVQPADWKKIAVENRIFF
                     ASASEAESAGYKKRQTAPQEHVPLRILSMNDLHGKIDQQYELDLDGNGTVDGTFGRMD
                     YAAAYLKEKKAEKKNSLIVHAGDMIGGSSPVSSLLQDEPTVELMEDIGFDVGTVGNHE
                     FDEGTDELLRILNGGDHPKGTSGYDGQNFPLVCANCKMKSTGEPFLPAYDIINVEGVP
                     VAFIGVVTQSAAGMVMPEGIKNIEFTDEATAVNKAAEELKKKGVKAIAVLAHMSAEQN
                     GNAITGESADLANKTDSEIDVIFAAHNHQVVNGEVNGKLIVQAFEYGKAIGVVDVEID
                     KTTKDIVKKSAEIVYVDQSKIEPDVSASAILKKYETIAEPIISEVVGEAAVDMEGGYS
                     NDGDTPLGNLIADGMRAAMKTDFALMNGGGIREALKKGPITWGDLYNIQPFGNVLTKL
                     EIKGKDLREIINAQISPVFGPDYSISGFTYTWDKETGKAVDMKMADGTEIQPDATYTL
                     TVNNFMATATGAKYQPIGLLGKNPVTGPEDLEATVEYVKSFDEPIAYTKEGRIKLAEA
                     SDIEDPVTEDPITEEPGDDPGTEDPIKEDPRPGEDLPDIKETPGTAPVHQLPPSAISR
                     FNEIPINNTKTADTANSISTLPLQTETAESGSDHQLPDTSAGYYNFMVIGAAVTLSGT
                     YLYVRRKRSASRT*"
                     /label="mncR CDS"
     gene            915573..919226
                     /gene="mncR"
                     /locus_tag="BSU_09190"
                     /old_locus_tag="BSU09190"
                     /label="mncR gene"
     promotor_-10    915581..915599
                     /Source="Nicolas_upshift_promotors"
                     /id="U719"
                     /multdbtbs="-"
                     /comp="M1"
                     /sig="SigH"
                     /pcomp=1
                     /psig=1
                     /xcortree=543
                     /SigmaFactorBS="tctgccgtgtattatgcagaagcctgAAAGGAATTatatgct
                     gtcTGTCGAAATGATAAGCAGAcaaaatcgttgtcattatgtgtataagggaggaaat
                     a"
                     /listShort="yhcR, yhcS"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        915596
                     /Source="Nicolas_upshifts"
                     /id="U719"
                     /multdbtbs="-"
                     /comp="M1"
                     /sig="SigH"
                     /pcomp=1
                     /psig=1
                     /xcortree=543
                     /SigmaFactorBS="tctgccgtgtattatgcagaagcctgAAAGGAATTatatgct
                     gtcTGTCGAAATGATAAGCAGAcaaaatcgttgtcattatgtgtataagggaggaaat
                     a"
                     /listShort="yhcR, yhcS"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             919223..919819
                     /gene="srtA"
                     /locus_tag="BSU_09200"
                     /old_locus_tag="BSU09200"
                     /EC_number="3.4.22.70"
                     /function="16.2: Construct biomass (Anabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:12823805, 21800427, 22020651, 25038633"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 12823805, 21800427,
                     22020651, 25038633; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="sortase A"
                     /protein_id="NP_388801.1"
                     /db_xref="EnsemblGenomes-Gn:BSU09200"
                     /db_xref="EnsemblGenomes-Tr:CAB12748"
                     /db_xref="GOA:P54603"
                     /db_xref="InterPro:IPR005754"
                     /db_xref="InterPro:IPR023365"
                     /db_xref="SubtiList:BG11597"
                     /db_xref="UniProtKB/Swiss-Prot:P54603"
                     /translation="MKKVIPLFIIAAGLVIAGYGGFKLIDTNTKTEQTLKEAKLAAKK
                     PQEASGTKNSTDQAKNKASFKPETGQASGILEIPKINAELPIVEGTDADDLEKGVGHY
                     KDSYYPDENGQIVLSGHRDTVFRRTGELEKGDQLRLLLSYGEFTYEIVKTKIVDKDDT
                     SIITLQHEKEELILTTCYPFSYVGNAPKRYIIYGKRVT*"
                     /label="srtA CDS"
     gene            919223..919819
                     /gene="srtA"
                     /locus_tag="BSU_09200"
                     /old_locus_tag="BSU09200"
                     /label="srtA gene"
     downshifts      919798
                     /Source="Nicolas_upshifts"
                     /id="D475"
                     /incds=0
                     /nref=142
                     /ntot=248
                     /MaxReadThrough="0.9984"
                     /MaxDrop="5.92245"
                     /score="-4.06268332"
                     /energy="-8.8"
                     /TU="NA"
                     /idTUdmin="U719"
                     /TUdmin=0
                     /isTUend="TRUE"
                     /label="downshifts"
     CDS             complement(919849..920757)
                     /gene="yhcT"
                     /locus_tag="BSU_09210"
                     /old_locus_tag="BSU09210"
                     /EC_number="5.4.99.-"
                     /function="16.2: Construct biomass (Anabolism)"
                     /function="16.8: Protect"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 9814761, 15044829;
                     Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative RNA pseudouridine synthase"
                     /protein_id="NP_388802.2"
                     /db_xref="EnsemblGenomes-Gn:BSU09210"
                     /db_xref="EnsemblGenomes-Tr:CAB12749"
                     /db_xref="GOA:P54604"
                     /db_xref="InterPro:IPR002942"
                     /db_xref="InterPro:IPR006145"
                     /db_xref="InterPro:IPR006224"
                     /db_xref="InterPro:IPR006225"
                     /db_xref="InterPro:IPR020103"
                     /db_xref="InterPro:IPR036986"
                     /db_xref="SubtiList:BG11598"
                     /db_xref="UniProtKB/Swiss-Prot:P54604"
                     /translation="MNQKGRGLEILINEKQDGQWLFSVLKTALKASKPVIQDWMSHQQ
                     IKVNHESVLNNMIVKKGDRVFIDLQESEASSVIPEYGELDILFEDNHMLIINKPAGIA
                     THPNEDGQTGTLANLIAYHYQINGETCKVRHVHRLDQDTSGAIVFAKHRLAHAILDQQ
                     LEKKTLKRTYTAIAEGKLRTKKGTINSPIGRDRSHPTRRRVSPGGQTAVTHFKVMASN
                     AKERLSLVELELETGRTHQIRVHLASLGHPLTGDSLYGGGSKLLNRQALHANKVQAVH
                     PITDELIVAEAPFPADMKNLCRTYFS*"
                     /label="yhcT CDS"
     gene            complement(919849..920757)
                     /gene="yhcT"
                     /locus_tag="BSU_09210"
                     /old_locus_tag="BSU09210"
                     /label="yhcT gene"
     promotor_-35    920813..920821
                     /Source="Nicolas_upshift_promotors"
                     /id="U721"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.57042957042957"
                     /psig="0.999000999001"
                     /xcortree=2026
                     /SigmaFactorBS="tttcgaagcggaaggctgctgtttctcataggaaacacttaC
                     CTTAGCTTtcgcgtttttttcTGTGCTATTCTTGAGTAAGActtaggatattcgatgg
                     c"
                     /listShort="yhcU"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    complement(920814..920825)
                     /Source="Nicolas_upshift_promotors"
                     /id="U720"
                     /multdbtbs="-"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp=1
                     /psig=1
                     /xcortree=803
                     /SigmaFactorBS="cctttcttgccatcgaatatcctaagtcttactcaAGAATAG
                     cacagaaaaaaacGCGAAAGCTAAGgtaagtgtttcctatgagaaacagcagccttcc
                     g"
                     /listShort="yhcT"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(920820)
                     /Source="Nicolas_upshifts"
                     /id="U720"
                     /multdbtbs="-"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp=1
                     /psig=1
                     /xcortree=803
                     /SigmaFactorBS="cctttcttgccatcgaatatcctaagtcttactcaAGAATAG
                     cacagaaaaaaacGCGAAAGCTAAGgtaagtgtttcctatgagaaacagcagccttcc
                     g"
                     /listShort="yhcT"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     S_feature       complement(920822..921308)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_996597_997083_c"
                     /HighExp="S8, dia15, Diami, H2O2, G180, G150, dia5, Paraq,
                     Oxctl, S7"
                     /AntisenseName="yhcU"
                     /AntisenseCor="0.69394173601478304"
                     /AntisenseRegPval="-39.200000000000003"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.958"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S319"
     upshifts        920832
                     /Source="Nicolas_upshifts"
                     /id="U721"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.57042957042957"
                     /psig="0.999000999001"
                     /xcortree=2026
                     /SigmaFactorBS="tttcgaagcggaaggctgctgtttctcataggaaacacttaC
                     CTTAGCTTtcgcgtttttttcTGTGCTATTCTTGAGTAAGActtaggatattcgatgg
                     c"
                     /listShort="yhcU"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-10    920835..920854
                     /Source="Nicolas_upshift_promotors"
                     /id="U721"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.57042957042957"
                     /psig="0.999000999001"
                     /xcortree=2026
                     /SigmaFactorBS="tttcgaagcggaaggctgctgtttctcataggaaacacttaC
                     CTTAGCTTtcgcgtttttttcTGTGCTATTCTTGAGTAAGActtaggatattcgatgg
                     c"
                     /listShort="yhcU"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     promotor_-35    complement(920839..920845)
                     /Source="Nicolas_upshift_promotors"
                     /id="U720"
                     /multdbtbs="-"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp=1
                     /psig=1
                     /xcortree=803
                     /SigmaFactorBS="cctttcttgccatcgaatatcctaagtcttactcaAGAATAG
                     cacagaaaaaaacGCGAAAGCTAAGgtaagtgtttcctatgagaaacagcagccttcc
                     g"
                     /listShort="yhcT"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             920868..921263
                     /gene="yhcU"
                     /locus_tag="BSU_09220"
                     /old_locus_tag="BSU09220"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved protein of unknown function"
                     /protein_id="NP_388803.2"
                     /db_xref="EnsemblGenomes-Gn:BSU09220"
                     /db_xref="EnsemblGenomes-Tr:CAB12750"
                     /db_xref="InterPro:IPR020355"
                     /db_xref="SubtiList:BG11599"
                     /db_xref="UniProtKB/Swiss-Prot:P54605"
                     /translation="MARKVIDVRIVNAATAEQESFIKELSMELIHDVFPLYFSELDIQ
                     RFKKKGVLSLNNHYYQGTLKEAFQIMACLQMIHIILTKPSPHSDLSDQAIFEKNSKML
                     NDFGIYFPFAFSDFQKKTNKAFFGQRRLI*"
                     /label="yhcU CDS"
     gene            920868..921263
                     /gene="yhcU"
                     /locus_tag="BSU_09220"
                     /old_locus_tag="BSU09220"
                     /label="yhcU gene"
     misc_feature    complement(921294..921313)
                     /Source="Nicolas_upshift_promotors"
                     /id="U722"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.709290709290709"
                     /psig="0.958041958041958"
                     /xcortree=1819
                     /SigmaFactorBS="cagacacgagccgtttaaaaagggagttagaggaaaggtttt
                     atgatatgatttcTCTGATACAAAAAGAGCTTTtctaaaaatagaaaagcccttgccg
                     c"
                     /listShort="S319, yhcT"
                     /GFF_Attribute="listLong"
                     /label="promotor_single_box"
                     /note="Geneious type: promotor_single_box"
     upshifts        complement(921308)
                     /Source="Nicolas_upshifts"
                     /id="U722"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.709290709290709"
                     /psig="0.958041958041958"
                     /xcortree=1819
                     /SigmaFactorBS="cagacacgagccgtttaaaaagggagttagaggaaaggtttt
                     atgatatgatttcTCTGATACAAAAAGAGCTTTtctaaaaatagaaaagcccttgccg
                     c"
                     /listShort="S319, yhcT"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    921348..921354
                     /Source="Nicolas_upshift_promotors"
                     /id="U723"
                     /multdbtbs="SigG"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp="0.99000999000999"
                     /psig="0.99000999000999"
                     /xcortree=842
                     /SigmaFactorBS="tttgtatcagagaaatcatatcataaaacctttcctctaact
                     cccTTTTTAAacggctcgtgtctGAACATACTAATgattgaaaggggtgctgacaatg
                     a"
                     /listShort="yhcV"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     upshifts        921363
                     /Source="Nicolas_upshifts"
                     /id="U723"
                     /multdbtbs="SigG"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp="0.99000999000999"
                     /psig="0.99000999000999"
                     /xcortree=842
                     /SigmaFactorBS="tttgtatcagagaaatcatatcataaaacctttcctctaact
                     cccTTTTTAAacggctcgtgtctGAACATACTAATgattgaaaggggtgctgacaatg
                     a"
                     /listShort="yhcV"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-10    921368..921379
                     /Source="Nicolas_upshift_promotors"
                     /id="U723"
                     /multdbtbs="SigG"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp="0.99000999000999"
                     /psig="0.99000999000999"
                     /xcortree=842
                     /SigmaFactorBS="tttgtatcagagaaatcatatcataaaacctttcctctaact
                     cccTTTTTAAacggctcgtgtctGAACATACTAATgattgaaaggggtgctgacaatg
                     a"
                     /listShort="yhcV"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     promotor_-10    complement(921378..921392)
                     /Source="Nicolas_upshift_promotors"
                     /id="U724"
                     /multdbtbs="-"
                     /comp="M15"
                     /sig="Sig-"
                     /pcomp="0.99000999000999"
                     /psig="0.002997002997003"
                     /xcortree=708
                     /SigmaFactorBS="ttcggagaaacggttgccacctgcgttgtcattgtatcttta
                     actgaaCTCATtgtcagcACCCCTTTCAATCATtagtatgttcagacacgagccgttt
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(921392)
                     /Source="Nicolas_upshifts"
                     /id="U724"
                     /multdbtbs="-"
                     /comp="M15"
                     /sig="Sig-"
                     /pcomp="0.99000999000999"
                     /psig="0.002997002997003"
                     /xcortree=708
                     /SigmaFactorBS="ttcggagaaacggttgccacctgcgttgtcattgtatcttta
                     actgaaCTCATtgtcagcACCCCTTTCAATCATtagtatgttcagacacgagccgttt
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(921400..921404)
                     /Source="Nicolas_upshift_promotors"
                     /id="U724"
                     /multdbtbs="-"
                     /comp="M15"
                     /sig="Sig-"
                     /pcomp="0.99000999000999"
                     /psig="0.002997002997003"
                     /xcortree=708
                     /SigmaFactorBS="ttcggagaaacggttgccacctgcgttgtcattgtatcttta
                     actgaaCTCATtgtcagcACCCCTTTCAATCATtagtatgttcagacacgagccgttt
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             921400..921822
                     /gene="yhcV"
                     /locus_tag="BSU_09230"
                     /old_locus_tag="BSU09230"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 17322312; Product type
                     e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative CBS containing enzyme (sporulation-/
                     germination-related)"
                     /protein_id="NP_388804.1"
                     /db_xref="EnsemblGenomes-Gn:BSU09230"
                     /db_xref="EnsemblGenomes-Tr:CAB12751"
                     /db_xref="InterPro:IPR000644"
                     /db_xref="SubtiList:BG11600"
                     /db_xref="UniProtKB/Swiss-Prot:P54606"
                     /translation="MSSVKDTMTTQVATVSPNQTIQEAASLMKQHNVGAIPVVEQGVL
                     KGMLTDRDIALRTTAQGRDGQTPVSEVMSTELVSGNPNMSLEDASQLMAQHQIRRLPI
                     VDQNNLVGIVALGDLAVNQMSNESAGSALTNISHQNIH*"
                     /label="yhcV CDS"
     gene            921400..921822
                     /gene="yhcV"
                     /locus_tag="BSU_09230"
                     /old_locus_tag="BSU09230"
                     /label="yhcV gene"
     promotor_no_box complement(921726..921826)
                     /Source="Nicolas_upshift_promotors"
                     /id="U725"
                     /multdbtbs="-"
                     /comp="M13"
                     /sig="Sig-"
                     /pcomp="0.3996003996004"
                     /psig="0.014985014985015"
                     /xcortree=1493
                     /SigmaFactorBS="cttattaatgaatgttttggtgagaaatgtttgtcagcgctg
                     atcccgcagactcgttcgacatctgattgactgccaggtctccaagcgcaacgatccc
                     g"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_no_box"
     upshifts        complement(921766)
                     /Source="Nicolas_upshifts"
                     /id="U725"
                     /multdbtbs="-"
                     /comp="M13"
                     /sig="Sig-"
                     /pcomp="0.3996003996004"
                     /psig="0.014985014985015"
                     /xcortree=1493
                     /SigmaFactorBS="cttattaatgaatgttttggtgagaaatgtttgtcagcgctg
                     atcccgcagactcgttcgacatctgattgactgccaggtctccaagcgcaacgatccc
                     g"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     downshifts      921800
                     /Source="Nicolas_upshifts"
                     /id="D476"
                     /incds=0
                     /nref=50
                     /ntot=61
                     /MaxReadThrough="2.62549"
                     /MaxDrop="7.03747"
                     /score="-2.59023198"
                     /energy="-12.1"
                     /TU="NA"
                     /idTUdmin="U723"
                     /TUdmin=0
                     /isTUend="TRUE"
                     /label="downshifts"
     downshifts      complement(921832)
                     /Source="Nicolas_upshifts"
                     /id="D477"
                     /incds=0
                     /nref=2
                     /ntot=10
                     /MaxReadThrough="0.0992700000000006"
                     /MaxDrop="3.96142"
                     /score="-9.32793172"
                     /energy="-9.1"
                     /TU="NA"
                     /idTUdmin="U724"
                     /TUdmin="-506"
                     /isTUend="FALSE"
                     /label="downshifts"
     promotor_-35    921872..921879
                     /Source="Nicolas_upshift_promotors"
                     /id="U726"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.983016983016983"
                     /psig=1
                     /xcortree=1997
                     /SigmaFactorBS="gtgcaggctctttcttcacataaaaccttacTTTTTGAAagc
                     agacttgtttCGGGGTATAGTGAGTGTATAcatatgtctcaattcgtactaaaggagt
                     t"
                     /listShort="yhcW, yhcX, yhzG"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    921893..921912
                     /Source="Nicolas_upshift_promotors"
                     /id="U726"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.983016983016983"
                     /psig=1
                     /xcortree=1997
                     /SigmaFactorBS="gtgcaggctctttcttcacataaaaccttacTTTTTGAAagc
                     agacttgtttCGGGGTATAGTGAGTGTATAcatatgtctcaattcgtactaaaggagt
                     t"
                     /listShort="yhcW, yhcX, yhzG"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        921901
                     /Source="Nicolas_upshifts"
                     /id="U726"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.983016983016983"
                     /psig=1
                     /xcortree=1997
                     /SigmaFactorBS="gtgcaggctctttcttcacataaaaccttacTTTTTGAAagc
                     agacttgtttCGGGGTATAGTGAGTGTATAcatatgtctcaattcgtactaaaggagt
                     t"
                     /listShort="yhcW, yhcX, yhzG"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             921949..922611
                     /gene="glpW"
                     /locus_tag="BSU_09240"
                     /old_locus_tag="BSU09240"
                     /EC_number="3.1.3.18"
                     /EC_number="3.1.3.68"
                     /EC_number="3.1.3.-"
                     /function="16.3: Control"
                     /function="16.11: Scavenge (Catabolism)"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 2a: Function from experimental evidences
                     in other organisms; PubMedId: 16990279, 22353596; Product
                     type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="promiscuous phosphoglycolate phosphatase /
                     glycerol-3-phosphate phosphatase /
                     2-deoxyglucose-6-phosphatase"
                     /protein_id="NP_388805.1"
                     /db_xref="EnsemblGenomes-Gn:BSU09240"
                     /db_xref="EnsemblGenomes-Tr:CAB12752"
                     /db_xref="GOA:P54607"
                     /db_xref="InterPro:IPR006439"
                     /db_xref="InterPro:IPR023214"
                     /db_xref="InterPro:IPR036412"
                     /db_xref="SubtiList:BG11601"
                     /db_xref="UniProtKB/Swiss-Prot:P54607"
                     /translation="MIKALIFDFDGLILDTETHEYEVLQEIFEEHGSVLPLSVWGKVI
                     GTAAGFRPFEYLEEQIGKKLNHEELTQLRRERFAKRMESEKARPGVEAYLNAAKDLGL
                     KIGLASSSDYKWVSGHLKQIGLFDDFEVIQTADDVEEVKPNPELYLLAAKNLGVSPAE
                     CLAFEDSVNGSIAAKRAGMKCVIVPNKVTGTLMFEDYDHRLESMAEMELALLLDHLNS
                     QN*"
                     /label="glpW CDS"
     gene            921949..922611
                     /gene="glpW"
                     /locus_tag="BSU_09240"
                     /old_locus_tag="BSU09240"
                     /label="glpW gene"
     CDS             922627..924168
                     /gene="yhcX"
                     /locus_tag="BSU_09250"
                     /old_locus_tag="BSU09250"
                     /EC_number="3.5.-.-"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 26337367, 26808445,
                     17555270; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative amidohydrolase"
                     /protein_id="NP_388806.2"
                     /db_xref="EnsemblGenomes-Gn:BSU09250"
                     /db_xref="EnsemblGenomes-Tr:CAB12753"
                     /db_xref="GOA:P54608"
                     /db_xref="InterPro:IPR000182"
                     /db_xref="InterPro:IPR001110"
                     /db_xref="InterPro:IPR003010"
                     /db_xref="InterPro:IPR016181"
                     /db_xref="InterPro:IPR036526"
                     /db_xref="SubtiList:BG11602"
                     /db_xref="UniProtKB/Swiss-Prot:P54608"
                     /translation="MSEKLDLTRFEKKMVIRNIEEKDIDKIIDLQKDCFPGMEPWKRE
                     HLISHLEHFPEGQFCAEFEGEIIGSCSSLLINFDEYDDRHTWQDITDDGYITNHNPDG
                     LNMYGIEVMVHPKYRRMKIGHRLYEARKDLARRLNLKSIIIGGRIPNYHKYAEEMTAR
                     EYVEQVTRHQIYDPVLSFQLMNGFTLMRINPNYLPDDTASIKYATLMEWNNVDYLPQQ
                     TKRYYKSAFPVRICVIQYEMKKIYSFEEFANQVEYYVDVASDARSDFAVFPEIFTTQL
                     MSFLEERSPSLAVQRITEYTEDYISLFTDLAVKYNVNIIGGSHFVEEEGKIYNIAYLF
                     RRDGTIEKQYKLHITPNERKWWGISAGDQVRVFDTDCGKIAIQICYDIEFPELARIAA
                     DKGAKIIFTPFCTEDRQGYLRVRYCSQARAVENQIYTVISGTVGNLPQTENMDIQYAQ
                     SGIFAPSDFEFARDGIVGETNPNIEMVVIGDVDLEILRRQRQNGTVRQLKDRRRDIYH
                     IQYKK*"
                     /label="yhcX CDS"
     gene            922627..924168
                     /gene="yhcX"
                     /locus_tag="BSU_09250"
                     /old_locus_tag="BSU09250"
                     /label="yhcX gene"
     downshifts      924151
                     /Source="Nicolas_upshifts"
                     /id="D478"
                     /incds=0
                     /nref=57
                     /ntot=238
                     /MaxReadThrough="4.24486"
                     /MaxDrop="5.06754"
                     /score="24.7413026"
                     /energy="-10.5"
                     /TU="U726"
                     /idTUdmin="U726"
                     /TUdmin="-224"
                     /isTUend="FALSE"
                     /label="downshifts"
     CDS             924252..924443
                     /gene="yhzG"
                     /locus_tag="BSU_09259"
                     /old_locus_tag="BSU09259"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 5: Unknown function"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /db_xref="PSEUDO:CAX52585.1"
                     /translation="MYSGCALWSFCIFAISYIIQKTARLHIAIAMAVQVVSSATFIST
                     MLSIVTLPVLLWKLHPLSS*"
                     /label="yhzG CDS"
     gene            924252..924443
                     /gene="yhzG"
                     /locus_tag="BSU_09259"
                     /old_locus_tag="BSU09259"
                     /pseudo
                     /label="yhzG gene"
     promotor_-35    924474..924481
                     /Source="Nicolas_upshift_promotors"
                     /id="U727"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.923076923076923"
                     /psig=1
                     /xcortree=333
                     /SigmaFactorBS="aggggatgttttattatttacgcggttTATTGACTctgaccc
                     ggtctggCTTTATATTGAAGGCAGGGAaatcatcaccaagacatcacataaagagaag
                     g"
                     /listShort="S320, yhxA, glpP, S321, glpF, glpK"
                     /listLong="S322, glpD, S323, pgcA"
                     /label="promotor_-35"
     promotor_-10    924496..924515
                     /Source="Nicolas_upshift_promotors"
                     /id="U727"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.923076923076923"
                     /psig=1
                     /xcortree=333
                     /SigmaFactorBS="aggggatgttttattatttacgcggttTATTGACTctgaccc
                     ggtctggCTTTATATTGAAGGCAGGGAaatcatcaccaagacatcacataaagagaag
                     g"
                     /listShort="S320, yhxA, glpP, S321, glpF, glpK"
                     /listLong="S322, glpD, S323, pgcA"
                     /label="promotor_-10"
     S_feature       924507..924588
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1000282_1000363"
                     /HighExp="M40t90, M0t90, T0.30H, LBGstat, BC, Lbstat,
                     M9-stat, Lbtran, T1.0H, T1.30H"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig=1
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S320"
     upshifts        924507
                     /Source="Nicolas_upshifts"
                     /id="U727"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.923076923076923"
                     /psig=1
                     /xcortree=333
                     /SigmaFactorBS="aggggatgttttattatttacgcggttTATTGACTctgaccc
                     ggtctggCTTTATATTGAAGGCAGGGAaatcatcaccaagacatcacataaagagaag
                     g"
                     /listShort="S320, yhxA, glpP, S321, glpF, glpK"
                     /listLong="S322, glpD, S323, pgcA"
                     /label="upshifts"
     CDS             924589..925941
                     /gene="yhxA"
                     /locus_tag="BSU_09260"
                     /old_locus_tag="BSU09260"
                     /EC_number="2.6.-.-"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 11082195, 23610425;
                     Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative aminotransferase"
                     /protein_id="NP_388807.2"
                     /db_xref="EnsemblGenomes-Gn:BSU09260"
                     /db_xref="EnsemblGenomes-Tr:CAB12754"
                     /db_xref="GOA:P33189"
                     /db_xref="InterPro:IPR005814"
                     /db_xref="InterPro:IPR015421"
                     /db_xref="InterPro:IPR015422"
                     /db_xref="InterPro:IPR015424"
                     /db_xref="SubtiList:BG10184"
                     /db_xref="UniProtKB/Swiss-Prot:P33189"
                     /translation="MEMMGMENIQQNQGLKQKDEQFVWHAMKGAHQADSLIAQKAEGA
                     WVTDTDGRRYLDAMSGLWCVNIGYGRKELAEAAYEQLKELPYYPLTQSHAPAIQLAEK
                     LNEWLGGDYVIFFSNSGSEANETAFKIARQYHLQNGDHSRYKFISRYRAYHGNTLGAL
                     SATGQAQRKYKYEPLSQGFLHAAPPDIYRNPDDADTLESANEIDRIMTWELSETIAGV
                     IMEPIITGGGILMPPDGYMKKVEDICRRHGALLICDEVICGFGRTGEPFGFMHYGVKP
                     DIITMAKGITSAYLPLSATAVKRDIFEAYQGEAPYDRFRHVNTFGGSPAACALALKNL
                     QIMEDEQLIQRSRDLGAKLLGELQALREHPAVGDVRGKGLLIGIELVKDKLTKEPADA
                     AKVNQVVAACKEKGLIIGKNGDTVAGYNNVIQLAPPFCLTEEDLSFIVKTVKESFQTI
                     *"
                     /label="yhxA CDS"
     gene            924589..925941
                     /gene="yhxA"
                     /locus_tag="BSU_09260"
                     /old_locus_tag="BSU09260"
                     /label="yhxA gene"
     CDS             925969..926547
                     /gene="glpP"
                     /locus_tag="BSU_09270"
                     /old_locus_tag="BSU09270"
                     /function="16.3: Control"
                     /experiment="publication(s) with functional evidences,
                     PMID:11929549, 23610425, 22720735"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 11929549, 23610425,
                     22720735; Product type r: regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="sn-glycerol-3-phosphate responding
                     transcriptionantiterminator"
                     /protein_id="NP_388808.1"
                     /db_xref="EnsemblGenomes-Gn:BSU09270"
                     /db_xref="EnsemblGenomes-Tr:CAB12755"
                     /db_xref="GOA:P30300"
                     /db_xref="InterPro:IPR006699"
                     /db_xref="InterPro:IPR035928"
                     /db_xref="SubtiList:BG10185"
                     /db_xref="UniProtKB/Swiss-Prot:P30300"
                     /translation="MMSFHNQPILPAIRNMKQFDEFLNSSFSYGVILDIHLGQLKGVI
                     KEAQKHGKNMMVHVDLIQGIKHDEYGAEFICQDIKPAGIISTRSNVIAKAKQKKIYAI
                     QRLFLLDTSAMEKSMEFIGKHKPDFIEVLPGIVPSLIQEIKEKTGIPIFAGGFIRTEE
                     DVEQALKAGAVAVTTSNTKLWKKYENFLTESD*"
                     /label="glpP CDS"
     gene            925969..926547
                     /gene="glpP"
                     /locus_tag="BSU_09270"
                     /old_locus_tag="BSU09270"
                     /label="glpP gene"
     promotor_-35    926542..926549
                     /Source="Nicolas_upshift_promotors"
                     /id="U728"
                     /multdbtbs="SigA"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.605394605394605"
                     /psig="0.998001998001998"
                     /xcortree=276
                     /SigmaFactorBS="aaatatgaaaactttttgacggaaagtGATTGACAccgcttt
                     catgcacTGATACAATTGCACTAGGTTaatacattgtgatggagaactcggagaccac
                     a"
                     /listShort="S321, glpF, glpK, S322, glpD, S323, pgcA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    926564..926583
                     /Source="Nicolas_upshift_promotors"
                     /id="U728"
                     /multdbtbs="SigA"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.605394605394605"
                     /psig="0.998001998001998"
                     /xcortree=276
                     /SigmaFactorBS="aaatatgaaaactttttgacggaaagtGATTGACAccgcttt
                     catgcacTGATACAATTGCACTAGGTTaatacattgtgatggagaactcggagaccac
                     a"
                     /listShort="S321, glpF, glpK, S322, glpD, S323, pgcA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        926575
                     /Source="Nicolas_upshifts"
                     /id="U728"
                     /multdbtbs="SigA"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.605394605394605"
                     /psig="0.998001998001998"
                     /xcortree=276
                     /SigmaFactorBS="aaatatgaaaactttttgacggaaagtGATTGACAccgcttt
                     catgcacTGATACAATTGCACTAGGTTaatacattgtgatggagaactcggagaccac
                     a"
                     /listShort="S321, glpF, glpK, S322, glpD, S323, pgcA"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     downshifts      926590
                     /Source="Nicolas_upshifts"
                     /id="D479"
                     /incds=0
                     /nref=3
                     /ntot=39
                     /MaxReadThrough="8.20986"
                     /MaxDrop="2.99328"
                     /score="6.07464219"
                     /energy="-10"
                     /TU="U727,U728"
                     /idTUdmin="U726"
                     /TUdmin=2215
                     /isTUend="FALSE"
                     /label="downshifts"
     S_feature       926635..926725
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1002410_1002500"
                     /HighExp="Diami, T0.30H, G150, Oxctl, Gly, Paraq, dia5,
                     BC, B60, H2O2"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA, SigA"
                     /TUshortPSig="0.998, 1"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S321"
     CDS             926726..927550
                     /gene="glpF"
                     /locus_tag="BSU_09280"
                     /old_locus_tag="BSU09280"
                     /function="16.1: Circulate"
                     /experiment="publication(s) with functional evidences,
                     PMID:11929549, 15849754, 16850406"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 11929549, 15849754,
                     16850406; Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="glycerol permease"
                     /protein_id="NP_388809.1"
                     /db_xref="EnsemblGenomes-Gn:BSU09280"
                     /db_xref="EnsemblGenomes-Tr:CAB12756"
                     /db_xref="GOA:P18156"
                     /db_xref="InterPro:IPR000425"
                     /db_xref="InterPro:IPR022357"
                     /db_xref="InterPro:IPR023271"
                     /db_xref="SubtiList:BG10186"
                     /db_xref="UniProtKB/Swiss-Prot:P18156"
                     /translation="MTAFWGEVIGTMLLIIFGAGVCAGVNLKKSLSFQSGWIVVVFGW
                     GLGVAMAAYAVGGISGAHLNPALTIALAFVGDFPWKEVPVYIAAQMIGAIIGAVIIYL
                     HYLPHWKSTDDPAAKLGVFSTGPSIPHTFANVLSEVIGTFVLVLGILAIGANQFTEGL
                     NPLIVGFLIVAIGISLGGTTGYAINPARDLGPRIAHAFLPIPGKGSSNWKYAWVPVVG
                     PILGGSFGGVFYNAAFKGHITSSFWIVSVILVVVLLGLYVYTKSHSAKTLSNSKYI*"
                     /label="glpF CDS"
     gene            926726..927550
                     /gene="glpF"
                     /locus_tag="BSU_09280"
                     /old_locus_tag="BSU09280"
                     /label="glpF gene"
     CDS             927569..929059
                     /gene="glpK"
                     /locus_tag="BSU_09290"
                     /old_locus_tag="BSU09290"
                     /EC_number="2.7.1.30"
                     /function="16.2: Construct biomass (Anabolism)"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 2a: Function from experimental evidences
                     in other organisms; PubMedId: 9972264, 10920256, 11929549,
                     22720735; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="glycerol kinase (sn-glycerol-3-phosphate
                     generating)"
                     /protein_id="NP_388810.2"
                     /db_xref="EnsemblGenomes-Gn:BSU09290"
                     /db_xref="EnsemblGenomes-Tr:CAB12757"
                     /db_xref="GOA:P18157"
                     /db_xref="InterPro:IPR000577"
                     /db_xref="InterPro:IPR005999"
                     /db_xref="InterPro:IPR018483"
                     /db_xref="InterPro:IPR018484"
                     /db_xref="InterPro:IPR018485"
                     /db_xref="SubtiList:BG10187"
                     /db_xref="UniProtKB/Swiss-Prot:P18157"
                     /translation="METYILSLDQGTTSSRAILFNKEGKIVHSAQKEFTQYFPHPGWV
                     EHNANEIWGSVLAVIASVISESGISASQIAGIGITNQRETTVVWDKDTGSPVYNAIVW
                     QSRQTSGICEELREKGYNDKFREKTGLLIDPYFSGTKVKWILDNVEGAREKAEKGELL
                     FGTIDTWLIWKMSGGKAHVTDYSNASRTLMFNIYDLKWDDELLDILGVPKSMLPEVKP
                     SSHVYAETVDYHFFGKNIPIAGAAGDQQSALFGQACFEEGMGKNTYGTGCFMLMNTGE
                     KAIKSEHGLLTTIAWGIDGKVNYALEGSIFVAGSAIQWLRDGLRMFQDSSLSESYAEK
                     VDSTDGVYVVPAFVGLGTPYWDSDVRGSVFGLTRGTTKEHFIRATLESLAYQTKDVLD
                     AMEADSNISLKTLRVDGGAVKNNFLMQFQGDLLNVPVERPEINETTALGAAYLAGIAV
                     GFWKDRSEIANQWNLDKRFEPELEEEKRNELYKGWQKAVKAAMAFK*"
                     /label="glpK CDS"
     gene            927569..929059
                     /gene="glpK"
                     /locus_tag="BSU_09290"
                     /old_locus_tag="BSU09290"
                     /label="glpK gene"
     promotor_-35    928370..928376
                     /Source="Nicolas_upshift_promotors"
                     /id="U729"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp=1
                     /psig=1
                     /xcortree=149
                     /SigmaFactorBS="gcatggggaaaaacacttacggcacaggaTGTTTCAtgctga
                     tgaataccGGGGAAAAAGCAATTAAGTCcgaacatgggcttttgacaacaatcgcttg
                     g"
                     /listShort="S322, glpD, S323"
                     /listLong="pgcA"
                     /label="promotor_-35"
     promotor_-10    928391..928410
                     /Source="Nicolas_upshift_promotors"
                     /id="U729"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp=1
                     /psig=1
                     /xcortree=149
                     /SigmaFactorBS="gcatggggaaaaacacttacggcacaggaTGTTTCAtgctga
                     tgaataccGGGGAAAAAGCAATTAAGTCcgaacatgggcttttgacaacaatcgcttg
                     g"
                     /listShort="S322, glpD, S323"
                     /listLong="pgcA"
                     /label="promotor_-10"
     upshifts        928401
                     /Source="Nicolas_upshifts"
                     /id="U729"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp=1
                     /psig=1
                     /xcortree=149
                     /SigmaFactorBS="gcatggggaaaaacacttacggcacaggaTGTTTCAtgctga
                     tgaataccGGGGAAAAAGCAATTAAGTCcgaacatgggcttttgacaacaatcgcttg
                     g"
                     /listShort="S322, glpD, S323"
                     /listLong="pgcA"
                     /label="upshifts"
     S_feature       929060..929148
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1004835_1004923"
                     /HighExp="Sw, Etha, Salt, G150, Gly, Diami, T0.30H, B60,
                     BC, Oxctl"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigB, SigA"
                     /TUshortPSig="1, 0.998"
                     /TUlongSig="SigA"
                     /TUlongPSig=1
                     /label="S322"
     downshifts      929105
                     /Source="Nicolas_upshifts"
                     /id="D480"
                     /incds=0
                     /nref=34
                     /ntot=91
                     /MaxReadThrough="7.63856"
                     /MaxDrop="5.2045"
                     /score="21.1943866"
                     /energy="-28.7"
                     /TU="U728,U729"
                     /idTUdmin="U727"
                     /TUdmin=0
                     /isTUend="TRUE"
                     /label="downshifts"
     promotor_no_box 929111..929211
                     /Source="Nicolas_upshift_promotors"
                     /id="U730"
                     /multdbtbs="-"
                     /comp="M21"
                     /sig="Sig-"
                     /pcomp="0.566433566433566"
                     /psig="0.154845154845155"
                     /xcortree=277
                     /SigmaFactorBS="aggagagaccacagcaccaaagtgtaagcatgcactttggct
                     gttgtggtctctttttctatttaccgtgacaacaaggaggaaacgtaatgatgaatca
                     t"
                     /listShort="glpD, S323, pgcA"
                     /GFF_Attribute="listLong"
                     /label="promotor_no_box"
     upshifts        929171
                     /Source="Nicolas_upshifts"
                     /id="U730"
                     /multdbtbs="-"
                     /comp="M21"
                     /sig="Sig-"
                     /pcomp="0.566433566433566"
                     /psig="0.154845154845155"
                     /xcortree=277
                     /SigmaFactorBS="aggagagaccacagcaccaaagtgtaagcatgcactttggct
                     gttgtggtctctttttctatttaccgtgacaacaaggaggaaacgtaatgatgaatca
                     t"
                     /listShort="glpD, S323, pgcA"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             929200..930867
                     /gene="glpD"
                     /locus_tag="BSU_09300"
                     /old_locus_tag="BSU09300"
                     /EC_number="1.1.3.21"
                     /function="16.2: Construct biomass (Anabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:2127799, 8825777, 9595668, 10633102, 18946204"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 2127799, 8825777,
                     9595668, 10633102, 18946204; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="sn-glycerol-3-phosphate oxidase (FAD-dependent)"
                     /protein_id="NP_388811.2"
                     /db_xref="EnsemblGenomes-Gn:BSU09300"
                     /db_xref="EnsemblGenomes-Tr:CAB12758"
                     /db_xref="GOA:P18158"
                     /db_xref="InterPro:IPR000447"
                     /db_xref="InterPro:IPR006076"
                     /db_xref="InterPro:IPR031656"
                     /db_xref="InterPro:IPR036188"
                     /db_xref="SubtiList:BG10188"
                     /db_xref="UniProtKB/Swiss-Prot:P18158"
                     /translation="MMNHQFSSLERDRMLTDMTKKTYDLFIIGGGITGAGTALDAASR
                     GMKVALSEMQDFAAGTSSRSTKLVHGGLRYLKQFEVKMVAEVGKERAIVYENGPHVTT
                     PEWMLLPFHKGGTFGSFTTSIGLRVYDFLAGVKKSERRSMLSAKETLQKEPLVKKDGL
                     KGGGYYVEYRTDDARLTIEVMKEAVKFGAEPVNYSKVKELLYEKGKAVGVLIEDVLTK
                     KEYKVYAKKIVNATGPWVDQLREKDHSKNGKHLQHTKGIHLVFDQSVFPLKQAVYFDT
                     PDGRMVFAIPREGKTYVGTTDTVYKEALEHPRMTTEDRDYVIKSINYMFPELNITAND
                     IESSWAGLRPLIHEEGKDPSEISRKDEIWTSDSGLITIAGGKLTGYRKMAEHIVDLVR
                     DRLKEEGEKDFGPCKTKNMPISGGHVGGSKNLMSFVTAKTKEGIAAGLSEKDAKQLAI
                     RYGSNVDRVFDRVEALKDEAAKRNIPVHILAEAEYSIEEEMTATPADFFVRRTGRLFF
                     DINWVRTYKDAVIDFMSERFQWDEQAKNKHTENLNKLLHDAVVPLEQ*"
                     /label="glpD CDS"
     gene            929200..930867
                     /gene="glpD"
                     /locus_tag="BSU_09300"
                     /old_locus_tag="BSU09300"
                     /label="glpD gene"
     promotor_-35    930629..930634
                     /Source="Nicolas_upshift_promotors"
                     /id="U731"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.995004995004995"
                     /psig="0.995004995004995"
                     /xcortree=1176
                     /SigmaFactorBS="aaagatgaggccgcgaaacgcaacattccggTTCATAttctt
                     gctgaggcaGAATACAGTATAGAAGAAGagatgactgcaacccctgctgacttctttg
                     t"
                     /listShort="S323"
                     /listLong="pgcA"
                     /label="promotor_-35"
     promotor_-10    930649..930667
                     /Source="Nicolas_upshift_promotors"
                     /id="U731"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.995004995004995"
                     /psig="0.995004995004995"
                     /xcortree=1176
                     /SigmaFactorBS="aaagatgaggccgcgaaacgcaacattccggTTCATAttctt
                     gctgaggcaGAATACAGTATAGAAGAAGagatgactgcaacccctgctgacttctttg
                     t"
                     /listShort="S323"
                     /listLong="pgcA"
                     /label="promotor_-10"
     upshifts        930658
                     /Source="Nicolas_upshifts"
                     /id="U731"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.995004995004995"
                     /psig="0.995004995004995"
                     /xcortree=1176
                     /SigmaFactorBS="aaagatgaggccgcgaaacgcaacattccggTTCATAttctt
                     gctgaggcaGAATACAGTATAGAAGAAGagatgactgcaacccctgctgacttctttg
                     t"
                     /listShort="S323"
                     /listLong="pgcA"
                     /label="upshifts"
     promotor_-35    930712..930718
                     /Source="Nicolas_upshift_promotors"
                     /id="U732"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp=1
                     /psig=1
                     /xcortree=255
                     /SigmaFactorBS="actgcaacccctgctgacttctttgtccgcagaacgggaCGT
                     TTATtttttgatatcaattGGGTAAGAACATATAAAGAtgccgttattgattttatga
                     g"
                     /listShort="S323, pgcA, S324, yhcY, yhcZ, yhdA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     upshifts        930733
                     /Source="Nicolas_upshifts"
                     /id="U732"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp=1
                     /psig=1
                     /xcortree=255
                     /SigmaFactorBS="actgcaacccctgctgacttctttgtccgcagaacgggaCGT
                     TTATtttttgatatcaattGGGTAAGAACATATAAAGAtgccgttattgattttatga
                     g"
                     /listShort="S323, pgcA, S324, yhcY, yhcZ, yhdA"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-10    930734..930752
                     /Source="Nicolas_upshift_promotors"
                     /id="U732"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp=1
                     /psig=1
                     /xcortree=255
                     /SigmaFactorBS="actgcaacccctgctgacttctttgtccgcagaacgggaCGT
                     TTATtttttgatatcaattGGGTAAGAACATATAAAGAtgccgttattgattttatga
                     g"
                     /listShort="S323, pgcA, S324, yhcY, yhcZ, yhdA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     downshifts      930835
                     /Source="Nicolas_upshifts"
                     /id="D481"
                     /incds=0
                     /nref=13
                     /ntot=60
                     /MaxReadThrough="6.57605"
                     /MaxDrop="4.31183"
                     /score="11.5542287"
                     /energy="-11.4"
                     /TU="U728,U729,U730,U731,U732"
                     /idTUdmin="U729"
                     /TUdmin="-118"
                     /isTUend="FALSE"
                     /label="downshifts"
     S_feature       930880..930953
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1006655_1006728"
                     /HighExp="G150, Etha, Oxctl, H2O2, Gly, Diami, Paraq,
                     Salt, B36, BT"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigB, SigEF, Sig-, SigB, SigA"
                     /TUshortPSig="1, 0.995, 0.155, 1, 0.998"
                     /TUlongSig="SigA"
                     /TUlongPSig=1
                     /label="S323"
     promotor_-35    930935..930942
                     /Source="Nicolas_upshift_promotors"
                     /id="U733"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.915084915084915"
                     /psig="0.998001998001998"
                     /xcortree=1942
                     /SigmaFactorBS="atttctttttacgtgccgaaagggggagatctcaggttatCA
                     AGTGACagaggcacccgctTCATATAAAATAATGGCATAagctgatacataggaggac
                     g"
                     /listShort="pgcA, S324, yhcY, yhcZ, yhdA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     upshifts        930955
                     /Source="Nicolas_upshifts"
                     /id="U733"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.915084915084915"
                     /psig="0.998001998001998"
                     /xcortree=1942
                     /SigmaFactorBS="atttctttttacgtgccgaaagggggagatctcaggttatCA
                     AGTGACagaggcacccgctTCATATAAAATAATGGCATAagctgatacataggaggac
                     g"
                     /listShort="pgcA, S324, yhcY, yhcZ, yhdA"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-10    930956..930975
                     /Source="Nicolas_upshift_promotors"
                     /id="U733"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.915084915084915"
                     /psig="0.998001998001998"
                     /xcortree=1942
                     /SigmaFactorBS="atttctttttacgtgccgaaagggggagatctcaggttatCA
                     AGTGACagaggcacccgctTCATATAAAATAATGGCATAagctgatacataggaggac
                     g"
                     /listShort="pgcA, S324, yhcY, yhcZ, yhdA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     CDS             930999..932744
                     /gene="pgcA"
                     /locus_tag="BSU_09310"
                     /old_locus_tag="BSU09310"
                     /EC_number="5.4.2.2"
                     /function="16.13: Shape"
                     /function="16.2: Construct biomass (Anabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:15640167, 17662947, 24097947, 26735940, 27684739"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 15640167, 17662947,
                     24097947, 26735940, 27684739; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-phosphoglucomutase"
                     /protein_id="NP_388812.2"
                     /db_xref="EnsemblGenomes-Gn:BSU09310"
                     /db_xref="EnsemblGenomes-Tr:CAB12759"
                     /db_xref="GOA:P18159"
                     /db_xref="InterPro:IPR005841"
                     /db_xref="InterPro:IPR005843"
                     /db_xref="InterPro:IPR005844"
                     /db_xref="InterPro:IPR005845"
                     /db_xref="InterPro:IPR005846"
                     /db_xref="InterPro:IPR016055"
                     /db_xref="InterPro:IPR016066"
                     /db_xref="InterPro:IPR036900"
                     /db_xref="SubtiList:BG10189"
                     /db_xref="UniProtKB/Swiss-Prot:P18159"
                     /translation="MTWRKSYERWKQTEHLDLELKERLIELEGDEQALEDCFYKDLEF
                     GTGGMRGEIGAGTNRMNIYTVRKASAGFAAYISKQGEEAKKRGVVIAYDSRHKSPEFA
                     MEAAKTLATQGIQTYVFDELRPTPELSFAVRQLNAYGGIVVTASHNPPEYNGYKVYGD
                     DGGQLPPKEADIVIEQVNAIENELTITVDEENKLKEKGLIKIIGEDIDKVYTEKLTSI
                     SVHPELSEEVDVKVVFTPLHGTANKPVRRGLEALGYKNVTVVKEQELPDSNFSTVTSP
                     NPEEHAAFEYAIKLGEEQNADILIATDPDADRLGIAVKNDQGKYTVLTGNQTGALLLH
                     YLLSEKKKQGILPDNGVVLKTIVTSEIGRAVASSFGLDTIDTLTGFKFIGEKIKEYEA
                     SGQYTFQFGYEESYGYLIGDFARDKDAIQAALLAVEVCAFYKKQGMSLYEALINLFNE
                     YGFYREGLKSLTLKGKQGAEQIEAILASFRQNPPQKMAGKQVVTAEDYAVSKRTLLTE
                     SKEEAIDLPKSNVLKYFLEDGSWFCLRPSGTEPKVKFYFAVKGSSLEDSEKRLAVLSE
                     DVMKTVDEIVESTAK*"
                     /label="pgcA CDS"
     gene            930999..932744
                     /gene="pgcA"
                     /locus_tag="BSU_09310"
                     /old_locus_tag="BSU09310"
                     /label="pgcA gene"
     downshifts      932733
                     /Source="Nicolas_upshifts"
                     /id="D482"
                     /incds=0
                     /nref=227
                     /ntot=264
                     /MaxReadThrough="4.80136"
                     /MaxDrop="5.89896"
                     /score="26.7163878"
                     /energy="-13"
                     /TU="U732,U733"
                     /idTUdmin="U728"
                     /TUdmin="-6"
                     /isTUend="TRUE"
                     /label="downshifts"
     S_feature       932778..932847
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1008553_1008622"
                     /HighExp="Etha, H2O2, B36, dia15, Paraq, G150, LoTm, S8,
                     Oxctl, Heat"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA, SigB"
                     /TUshortPSig="0.998, 1"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S324"
     misc_feature    932849..932868
                     /Source="Nicolas_upshift_promotors"
                     /id="U734"
                     /multdbtbs="SigA"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.62037962037962"
                     /psig="0.998001998001998"
                     /xcortree=3137
                     /SigmaFactorBS="tttctcatccaaaagtctgaaagaaaatcatcctacaagtga
                     agcaatgaaatacaaaaaACTGGTATAATCTTAAATACaagatcaatgccggagtgag
                     a"
                     /listShort="yhcY, yhcZ, yhdA"
                     /GFF_Attribute="listLong"
                     /label="promotor_single_box"
                     /note="Geneious type: promotor_single_box"
     upshifts        932849
                     /Source="Nicolas_upshifts"
                     /id="U734"
                     /multdbtbs="SigA"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.62037962037962"
                     /psig="0.998001998001998"
                     /xcortree=3137
                     /SigmaFactorBS="tttctcatccaaaagtctgaaagaaaatcatcctacaagtga
                     agcaatgaaatacaaaaaACTGGTATAATCTTAAATACaagatcaatgccggagtgag
                     a"
                     /listShort="yhcY, yhcZ, yhdA"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             932893..934032
                     /gene="yhcY"
                     /locus_tag="BSU_09320"
                     /old_locus_tag="BSU09320"
                     /function="16.3: Control"
                     /function="16.12: Sense"
                     /experiment="publication(s) with functional evidences,
                     PMID:11717295, 16816187, 16267314, 20639339, 21335452"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 11717295, 16816187,
                     16267314, 20639339, 21335452; Product type rc: receptor"
                     /codon_start=1
                     /transl_table=11
                     /product="two-component sensor histidine kinase [YhcZ]"
                     /protein_id="NP_388813.1"
                     /db_xref="EnsemblGenomes-Gn:BSU09320"
                     /db_xref="EnsemblGenomes-Tr:CAB12760"
                     /db_xref="GOA:O07527"
                     /db_xref="InterPro:IPR003018"
                     /db_xref="InterPro:IPR003594"
                     /db_xref="InterPro:IPR011712"
                     /db_xref="InterPro:IPR029016"
                     /db_xref="InterPro:IPR036890"
                     /db_xref="SubtiList:BG13005"
                     /db_xref="UniProtKB/Swiss-Prot:O07527"
                     /translation="MSKTRMEKLKTLKTIAETLNQGHDIKATLDEVLKELLSLTNLQS
                     GWIFLIEEDGSYTLAADAYLPPALSRKEKVLMCEGECYCLTKFNNGGLRKAANIMNCK
                     RIESAENLHCFDTEGITHHATVPLEDGDRRFGLLNVAAAGKTMFDEEELHLLESVAFQ
                     IGTAIQRMRLSEYQQKNALLMERNRLAQELHDSVNQMLFSVSLTAKAAKTLTKDENLQ
                     QMIDFIQNLSQDALAEMKALIWQLRPGGLEKGLAEAIKSYGALIGLKIIFTQKGCPVL
                     TDEQEHMLWRVVQEALNNCKKHAGTDTAYVSLTASLCHAELDIIDHGAGFRYEAHAGL
                     PSLGIKGMKERAEKAGAKFWIESALGTGTKLSIRLPLKSRKGGAV*"
                     /label="yhcY CDS"
     gene            932893..934032
                     /gene="yhcY"
                     /locus_tag="BSU_09320"
                     /old_locus_tag="BSU09320"
                     /label="yhcY gene"
     CDS             934029..934673
                     /gene="yhcZ"
                     /locus_tag="BSU_09330"
                     /old_locus_tag="BSU09330"
                     /function="16.3: Control"
                     /experiment="publication(s) with functional evidences,
                     PMID:11717295, 16816187, 16267314, 20639339, 21335452"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 11717295, 16816187,
                     16267314, 20639339, 21335452; Product type r: regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="two-component response regulator [YhcY]"
                     /protein_id="NP_388814.1"
                     /db_xref="EnsemblGenomes-Gn:BSU09330"
                     /db_xref="EnsemblGenomes-Tr:CAB12761"
                     /db_xref="GOA:O07528"
                     /db_xref="InterPro:IPR000792"
                     /db_xref="InterPro:IPR001789"
                     /db_xref="InterPro:IPR011006"
                     /db_xref="InterPro:IPR016032"
                     /db_xref="InterPro:IPR036388"
                     /db_xref="SubtiList:BG13006"
                     /db_xref="UniProtKB/Swiss-Prot:O07528"
                     /translation="MKIVIADDHHVVRKGLRFFFATQDDIEVVGEAATGLEALRVIEE
                     TKPDLVLMDLSMPEMDGIQAIKKAIQQFPDTNIIVLTSYSDQEHVIPALQAGAKAYQL
                     KDTEPEELVKTRQVHGGEYKLSTAIMPHVLTHMKNQHDPEKEKYYQLTRREKDVLTEI
                     ANGKSNKEIAAALFISEKTVKTHVSNLLAKLEVADRTQAALFAVKYNLNGEISK*"
                     /label="yhcZ CDS"
     gene            934029..934673
                     /gene="yhcZ"
                     /locus_tag="BSU_09330"
                     /old_locus_tag="BSU09330"
                     /label="yhcZ gene"
     CDS             934670..935194
                     /gene="azr"
                     /locus_tag="BSU_09340"
                     /old_locus_tag="BSU09340"
                     /EC_number="1.7.1.-"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 2a: Function from experimental evidences
                     in other organisms; PubMedId: 15184374, 16816187,
                     20639339; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="oxidoreductase, NAD(P)H-FMN and ferric iron
                     reductase (azoreductase)"
                     /protein_id="NP_388815.1"
                     /db_xref="EnsemblGenomes-Gn:BSU09340"
                     /db_xref="EnsemblGenomes-Tr:CAB12762"
                     /db_xref="GOA:O07529"
                     /db_xref="InterPro:IPR005025"
                     /db_xref="InterPro:IPR029039"
                     /db_xref="PDB:1NNI"
                     /db_xref="PDB:2GSW"
                     /db_xref="PDB:3GFQ"
                     /db_xref="PDB:3GFR"
                     /db_xref="PDB:3GFS"
                     /db_xref="SubtiList:BG13007"
                     /db_xref="UniProtKB/Swiss-Prot:O07529"
                     /translation="MNMLVINGTPRKHGRTRIAASYIAALYHTDLIDLSEFVLPVFNG
                     EAEQSELLKVQELKQRVTKADAIVLLSPEYHSGMSGALKNALDFLSSEQFKYKPVALL
                     AVAGGGKGGINALNNMRTVMRGVYANVIPKQLVLDPVHIDVENATVAENIKESIKELV
                     EELSMFAKAGNPGV*"
                     /label="azr CDS"
     gene            934670..935194
                     /gene="azr"
                     /locus_tag="BSU_09340"
                     /old_locus_tag="BSU09340"
                     /label="azr gene"
     downshifts      935159
                     /Source="Nicolas_upshifts"
                     /id="D483"
                     /incds=0
                     /nref=72
                     /ntot=215
                     /MaxReadThrough="2.90096"
                     /MaxDrop="4.78561"
                     /score="27.1269177"
                     /energy="-17.2"
                     /TU="NA"
                     /idTUdmin="U734"
                     /TUdmin=0
                     /isTUend="TRUE"
                     /label="downshifts"
     CDS             complement(935209..935451)
                     /gene="yhdB"
                     /locus_tag="BSU_09350"
                     /old_locus_tag="BSU09350"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved hypothetical protein"
                     /protein_id="NP_388816.1"
                     /db_xref="EnsemblGenomes-Gn:BSU09350"
                     /db_xref="EnsemblGenomes-Tr:CAB12763"
                     /db_xref="InterPro:IPR025431"
                     /db_xref="SubtiList:BG13008"
                     /db_xref="UniProtKB/Swiss-Prot:O07530"
                     /translation="MDYADYDKALYYTHRSQWDNLLILMVRTEDDLLSKRIEHFLHAY
                     HFEQDYAVLEKMLYSLLRYIDHATELTYEDQIALLT*"
                     /label="yhdB CDS"
     gene            complement(935209..935451)
                     /gene="yhdB"
                     /locus_tag="BSU_09350"
                     /old_locus_tag="BSU09350"
                     /label="yhdB gene"
     downshifts      complement(935230)
                     /Source="Nicolas_upshifts"
                     /id="D484"
                     /incds=0
                     /nref=39
                     /ntot=84
                     /MaxReadThrough="-0.0235599999999998"
                     /MaxDrop="7.78706"
                     /score="12.0066876"
                     /energy="-17.2"
                     /TU="NA"
                     /idTUdmin="U735"
                     /TUdmin="-17"
                     /isTUend="TRUE"
                     /label="downshifts"
     promotor_-10    complement(935487..935498)
                     /Source="Nicolas_upshift_promotors"
                     /id="U735"
                     /multdbtbs="-"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp="0.556443556443556"
                     /psig="0.556443556443556"
                     /xcortree=833
                     /SigmaFactorBS="attgctacccctttactgacgcagacggcaagttttgccCCG
                     TCAATaacagaggatgcgGCATAAACTAATcatgaacttctcacccaagaaaggagaa
                     g"
                     /listShort="yhdB"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(935498)
                     /Source="Nicolas_upshifts"
                     /id="U735"
                     /multdbtbs="-"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp="0.556443556443556"
                     /psig="0.556443556443556"
                     /xcortree=833
                     /SigmaFactorBS="attgctacccctttactgacgcagacggcaagttttgccCCG
                     TCAATaacagaggatgcgGCATAAACTAATcatgaacttctcacccaagaaaggagaa
                     g"
                     /listShort="yhdB"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(935512..935519)
                     /Source="Nicolas_upshift_promotors"
                     /id="U735"
                     /multdbtbs="-"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp="0.556443556443556"
                     /psig="0.556443556443556"
                     /xcortree=833
                     /SigmaFactorBS="attgctacccctttactgacgcagacggcaagttttgccCCG
                     TCAATaacagaggatgcgGCATAAACTAATcatgaacttctcacccaagaaaggagaa
                     g"
                     /listShort="yhdB"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-35    935586..935592
                     /Source="Nicolas_upshift_promotors"
                     /id="U736"
                     /multdbtbs="-"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp=1
                     /psig=1
                     /xcortree=929
                     /SigmaFactorBS="aatatgagggagacataaaatcaaaatgccTGAATGAagata
                     tcgcttttGGTAAACCTATGagggaatatattctgggtacaggagactgaaaaaatga
                     a"
                     /listShort="yhdC, S325"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    935606..935617
                     /Source="Nicolas_upshift_promotors"
                     /id="U736"
                     /multdbtbs="-"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp=1
                     /psig=1
                     /xcortree=929
                     /SigmaFactorBS="aatatgagggagacataaaatcaaaatgccTGAATGAagata
                     tcgcttttGGTAAACCTATGagggaatatattctgggtacaggagactgaaaaaatga
                     a"
                     /listShort="yhdC, S325"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        935616
                     /Source="Nicolas_upshifts"
                     /id="U736"
                     /multdbtbs="-"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp=1
                     /psig=1
                     /xcortree=929
                     /SigmaFactorBS="aatatgagggagacataaaatcaaaatgccTGAATGAagata
                     tcgcttttGGTAAACCTATGagggaatatattctgggtacaggagactgaaaaaatga
                     a"
                     /listShort="yhdC, S325"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             935652..935975
                     /gene="yhdC"
                     /locus_tag="BSU_09360"
                     /old_locus_tag="BSU09360"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; Product type f: factor"
                     /codon_start=1
                     /transl_table=11
                     /product="putative exported protein"
                     /protein_id="NP_388817.1"
                     /db_xref="EnsemblGenomes-Gn:BSU09360"
                     /db_xref="EnsemblGenomes-Tr:CAB12764"
                     /db_xref="InterPro:IPR024987"
                     /db_xref="SubtiList:BG13009"
                     /db_xref="UniProtKB/Swiss-Prot:O07531"
                     /translation="MKSLPYTIALLFCGLIIVSMAAKGHSTDTDESVQKWEQLAWSKI
                     QDEYKGASFSDYAYMGRTEVNDQQTKDVFRVTVRQKDDTFSVRAEVYFHPVTNHMISI
                     NVFRL*"
                     /label="yhdC CDS"
     gene            935652..935975
                     /gene="yhdC"
                     /locus_tag="BSU_09360"
                     /old_locus_tag="BSU09360"
                     /label="yhdC gene"
     S_feature       935976..937842
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1011751_1013617"
                     /HighExp="S8, S5, S7, S6, S4, C30, Sw, ferm, S3, BC"
                     /AntisenseName="lytF"
                     /AntisenseCor="-0.65564579825076796"
                     /AntisenseRegPval="-33.700000000000003"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigGF"
                     /TUshortPSig=1
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S325"
     CDS             complement(936017..937483)
                     /gene="lytF"
                     /locus_tag="BSU_09370"
                     /old_locus_tag="BSU09370"
                     /EC_number="3.4.-.-"
                     /function="16.13: Shape"
                     /experiment="publication(s) with functional evidences,
                     PMID:10206711, 14594841, 18761694, 18761696, 23091053,
                     25288647"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 10206711, 14594841,
                     18761694, 18761696, 23091053, 25288647; Product type e :
                     enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="gamma-D-glutamate-meso-diaminopimelate
                     muropeptidase (major autolysin, vegetative)"
                     /protein_id="NP_388818.2"
                     /db_xref="EnsemblGenomes-Gn:BSU09370"
                     /db_xref="EnsemblGenomes-Tr:CAB12776"
                     /db_xref="GOA:O07532"
                     /db_xref="InterPro:IPR000064"
                     /db_xref="InterPro:IPR018392"
                     /db_xref="InterPro:IPR036779"
                     /db_xref="SubtiList:BG13010"
                     /db_xref="UniProtKB/Swiss-Prot:O07532"
                     /translation="MKKKLAAGLTASAIVGTTLVVTPAEAATIKVKSGDSLWKLAQTY
                     NTSVAALTSANHLSTTVLSIGQTLTIPGSKSSTSSSTSSSTTKKSGSSVYTVKSGDSL
                     WLIANEFKMTVQELKKLNGLSSDLIRAGQKLKVSGTVSSSSSSSKKSNSNKSSSSSSK
                     SSSNKSSSSSSSTGTYKVQLGDSLWKIANKVNMSIAELKVLNNLKSDTIYVNQVLKTK
                     SSGSDTSSKDNSSKSNQTSATTKYTVKSGDSLWKIANNYNLTVQQIRNINNLKSDVLY
                     VGQVLKLTGKASSGSSSSSSSSSNASSGTTTTYTVKSGDSLWVIAQKFNVTAQQIREK
                     NNLKTDVLQVGQKLVISGKASSSSSSGSSNTTSSTSAKINTMISAAKAQLGVPYRWGG
                     TTPSGFDCSGFIYYVLNKVTSVSRLTAAGYWNTMKSVSQPAVGDFVFFSTYKAGPSHV
                     GIYLGNGEFINANDSGVVISNMNNSYWKQRYLGAKRYF*"
                     /label="lytF CDS"
     gene            complement(936017..937483)
                     /gene="lytF"
                     /locus_tag="BSU_09370"
                     /old_locus_tag="BSU09370"
                     /label="lytF gene"
     downshifts      complement(936029)
                     /Source="Nicolas_upshifts"
                     /id="D485"
                     /incds=0
                     /nref=121
                     /ntot=216
                     /MaxReadThrough="2.34529"
                     /MaxDrop="4.33563"
                     /score="24.6732339"
                     /energy="-14.2"
                     /TU="NA"
                     /idTUdmin="U737"
                     /TUdmin="-1"
                     /isTUend="TRUE"
                     /label="downshifts"
     downshifts      complement(936116)
                     /Source="Nicolas_upshifts"
                     /id="D486"
                     /incds=1
                     /nref=1
                     /ntot=87
                     /MaxReadThrough="5.73069"
                     /MaxDrop="2.6306"
                     /score="24.6732339"
                     /energy="-14.2"
                     /TU="U737"
                     /idTUdmin="U737"
                     /TUdmin="-88"
                     /isTUend="FALSE"
                     /label="downshifts"
     promotor_-10    complement(937523..937541)
                     /Source="Nicolas_upshift_promotors"
                     /id="U737"
                     /multdbtbs="SigD"
                     /comp="M10"
                     /sig="SigD"
                     /pcomp=1
                     /psig=1
                     /xcortree=2806
                     /SigmaFactorBS="ttgttaagataatttggctatttttataaaaagGCAAAACGa
                     tgagacaaatgtGCCGATATAAAAAAGAAACagcaaatgcaaaatcattgggggaaaa
                     a"
                     /listShort="lytF"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(937535)
                     /Source="Nicolas_upshifts"
                     /id="U737"
                     /multdbtbs="SigD"
                     /comp="M10"
                     /sig="SigD"
                     /pcomp=1
                     /psig=1
                     /xcortree=2806
                     /SigmaFactorBS="ttgttaagataatttggctatttttataaaaagGCAAAACGa
                     tgagacaaatgtGCCGATATAAAAAAGAAACagcaaatgcaaaatcattgggggaaaa
                     a"
                     /listShort="lytF"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(937555..937562)
                     /Source="Nicolas_upshift_promotors"
                     /id="U737"
                     /multdbtbs="SigD"
                     /comp="M10"
                     /sig="SigD"
                     /pcomp=1
                     /psig=1
                     /xcortree=2806
                     /SigmaFactorBS="ttgttaagataatttggctatttttataaaaagGCAAAACGa
                     tgagacaaatgtGCCGATATAAAAAAGAAACagcaaatgcaaaatcattgggggaaaa
                     a"
                     /listShort="lytF"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             complement(937636..938076)
                     /gene="nsrR"
                     /locus_tag="BSU_09380"
                     /old_locus_tag="BSU09380"
                     /function="16.3: Control"
                     /experiment="publication(s) with functional evidences,
                     PMID:16885456, 19006327, 21091510, 26887943, 27778474,
                     28425466, 28439033"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 16885456, 19006327,
                     21091510, 26887943, 27778474, 28425466, 28439033; Product
                     type r: regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="NO-dependent activator of the ResDE regulon
                     (Fe-S NO binding site)"
                     /protein_id="NP_388819.1"
                     /db_xref="EnsemblGenomes-Gn:BSU09380"
                     /db_xref="EnsemblGenomes-Tr:CAB12777"
                     /db_xref="GOA:O07573"
                     /db_xref="InterPro:IPR000944"
                     /db_xref="InterPro:IPR030489"
                     /db_xref="InterPro:IPR036388"
                     /db_xref="InterPro:IPR036390"
                     /db_xref="SubtiList:BG13011"
                     /db_xref="UniProtKB/Swiss-Prot:O07573"
                     /translation="MKLTNYTDYSLRVLIFLAAERPGELSNIKQIAETYSISKNHLMK
                     VIYRLGQLGYVETIRGRGGGIRLGMDPEDINIGEVVRKTEDDFNIVECFDANKNLCVI
                     SPVCGLKHVLNEALLAYLAVLDKYTLRDLVKNKEDIMKLLKMKE*"
                     /label="nsrR CDS"
     gene            complement(937636..938076)
                     /gene="nsrR"
                     /locus_tag="BSU_09380"
                     /old_locus_tag="BSU09380"
                     /label="nsrR gene"
     downshifts      complement(937666)
                     /Source="Nicolas_upshifts"
                     /id="D487"
                     /incds=0
                     /nref=205
                     /ntot=265
                     /MaxReadThrough="3.11158"
                     /MaxDrop="6.87147"
                     /score="5.96186156"
                     /energy="-7.8"
                     /TU="U739"
                     /idTUdmin="U740"
                     /TUdmin="-10"
                     /isTUend="TRUE"
                     /label="downshifts"
     promotor_-35    938064..938070
                     /Source="Nicolas_upshift_promotors"
                     /id="U738"
                     /multdbtbs="-"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp="0.904095904095904"
                     /psig="0.904095904095904"
                     /xcortree=408
                     /SigmaFactorBS="cagaaaaatcaacactcttaatgaataatctgtataatTGGT
                     TAActtcataataagaCCTCAGAATAAGacattttctatatcttatcataatcgattg
                     a"
                     /listShort="S326"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    938084..938095
                     /Source="Nicolas_upshift_promotors"
                     /id="U738"
                     /multdbtbs="-"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp="0.904095904095904"
                     /psig="0.904095904095904"
                     /xcortree=408
                     /SigmaFactorBS="cagaaaaatcaacactcttaatgaataatctgtataatTGGT
                     TAActtcataataagaCCTCAGAATAAGacattttctatatcttatcataatcgattg
                     a"
                     /listShort="S326"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     S_feature       938086..938196
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1013861_1013971"
                     /HighExp="S8, S7, S4, Sw, S5, S6, BC, B60, nit, Pyr"
                     /AntisenseName="ygxB"
                     /AntisenseCor="-0.211236686077168"
                     /AntisenseRegPval="-3.3"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigGF"
                     /TUshortPSig="0.904"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S326"
     upshifts        938086
                     /Source="Nicolas_upshifts"
                     /id="U738"
                     /multdbtbs="-"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp="0.904095904095904"
                     /psig="0.904095904095904"
                     /xcortree=408
                     /SigmaFactorBS="cagaaaaatcaacactcttaatgaataatctgtataatTGGT
                     TAActtcataataagaCCTCAGAATAAGacattttctatatcttatcataatcgattg
                     a"
                     /listShort="S326"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-10    complement(938098..938117)
                     /Source="Nicolas_upshift_promotors"
                     /id="U739"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.93906093906094"
                     /psig=1
                     /xcortree=3120
                     /SigmaFactorBS="catgcacccagctgggtgcatgttttttaattcctttttTTT
                     CATTtttcaatcgatTATGATAAGATATAGAAAATgtcttattctgaggtcttattat
                     g"
                     /listShort="nsrR, lytF"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(938114)
                     /Source="Nicolas_upshifts"
                     /id="U739"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.93906093906094"
                     /psig=1
                     /xcortree=3120
                     /SigmaFactorBS="catgcacccagctgggtgcatgttttttaattcctttttTTT
                     CATTtttcaatcgatTATGATAAGATATAGAAAATgtcttattctgaggtcttattat
                     g"
                     /listShort="nsrR, lytF"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(938129..938135)
                     /Source="Nicolas_upshift_promotors"
                     /id="U739"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.93906093906094"
                     /psig=1
                     /xcortree=3120
                     /SigmaFactorBS="catgcacccagctgggtgcatgttttttaattcctttttTTT
                     CATTtttcaatcgatTATGATAAGATATAGAAAATgtcttattctgaggtcttattat
                     g"
                     /listShort="nsrR, lytF"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     downshifts      938155
                     /Source="Nicolas_upshifts"
                     /id="D488"
                     /incds=0
                     /nref=10
                     /ntot=68
                     /MaxReadThrough="1.05981"
                     /MaxDrop="6.25571"
                     /score="22.5171081"
                     /energy="-11.6"
                     /TU="NA"
                     /idTUdmin="U738"
                     /TUdmin=3
                     /isTUend="TRUE"
                     /label="downshifts"
     CDS             complement(938183..939841)
                     /gene="ygxB"
                     /locus_tag="BSU_09390"
                     /old_locus_tag="BSU09390"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 15849754, 16850406;
                     Product type m: membrane component"
                     /codon_start=1
                     /transl_table=11
                     /product="putative integral membrane protein"
                     /protein_id="NP_388820.1"
                     /db_xref="EnsemblGenomes-Gn:BSU09390"
                     /db_xref="EnsemblGenomes-Tr:CAB12778"
                     /db_xref="GOA:P37874"
                     /db_xref="InterPro:IPR008910"
                     /db_xref="SubtiList:BG10181"
                     /db_xref="UniProtKB/Swiss-Prot:P37874"
                     /translation="MYEPARQKMIVSLGQEKIPPAHSSVCLLDKWVNTHHTTKKERYQ
                     LNVADVFSSYLSKLPNVIIALLVLLIGWAIAKIIEKAVYKGLSKTKIDDKLFAGKKPS
                     RYSSEKVISKVVYFIALIIVFILFFNILHLTTVASPFVSMLSAIAAAIPSVLKAGLIL
                     LLGWAAASVLSFLVKKIGMKLNTSDKLRKWNLVSEGKDIHQAVNTASQIVFYLVLLVF
                     LPGVLSSLKISGISGPFTNMMESVLAFLPKLFAAALIVLIGWLVARLVRDIITNFLAS
                     IGTERFAARMGLSIYLKDTSLSAVIGTIAYVLIMIPVVISALDQLDVAGISKPAVSML
                     NTILNMLPNIMIAIVLVLAGIWAGKWVKSMVSGLLHRAGFDSVLGKMGMEAGTPAKLS
                     LSQVVGMIAQIIVILLFTAEALQIVRLHFLVEIATGIIAYLPNVLVAVFILGLGLYAG
                     ELVRKVLASMIKGQEFKSLAPIAKYTIIALAFFMALDQLGVAATIVNSAFIIVLSGFA
                     LAFGLSFGLGGKDFASRYLSTFERKMQNTEIEKNRKNQNPPNDM*"
                     /label="ygxB CDS"
     gene            complement(938183..939841)
                     /gene="ygxB"
                     /locus_tag="BSU_09390"
                     /old_locus_tag="BSU09390"
                     /label="ygxB gene"
     downshifts      complement(938188)
                     /Source="Nicolas_upshifts"
                     /id="D489"
                     /incds=0
                     /nref=6
                     /ntot=40
                     /MaxReadThrough="8.34865"
                     /MaxDrop="5.55332"
                     /score="-5.46969987"
                     /energy="-14.5"
                     /TU="U740"
                     /idTUdmin="U740"
                     /TUdmin="-532"
                     /isTUend="FALSE"
                     /label="downshifts"
     promotor_-10    complement(939732..939750)
                     /Source="Nicolas_upshift_promotors"
                     /id="U740"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp=1
                     /psig=1
                     /xcortree=189
                     /SigmaFactorBS="agtctcactcgggcaagaaaaaattcccccggcacattcatc
                     TGTTTGCttattggataagtGGGTAAACACACACCATACtacgaaaaaggagcgatac
                     c"
                     /listShort="nsrR"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(939752)
                     /Source="Nicolas_upshifts"
                     /id="U740"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp=1
                     /psig=1
                     /xcortree=189
                     /SigmaFactorBS="agtctcactcgggcaagaaaaaattcccccggcacattcatc
                     TGTTTGCttattggataagtGGGTAAACACACACCATACtacgaaaaaggagcgatac
                     c"
                     /listShort="nsrR"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(939764..939770)
                     /Source="Nicolas_upshift_promotors"
                     /id="U740"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp=1
                     /psig=1
                     /xcortree=189
                     /SigmaFactorBS="agtctcactcgggcaagaaaaaattcccccggcacattcatc
                     TGTTTGCttattggataagtGGGTAAACACACACCATACtacgaaaaaggagcgatac
                     c"
                     /listShort="nsrR"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-35    939813..939818
                     /Source="Nicolas_upshift_promotors"
                     /id="U741"
                     /multdbtbs="SigE"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.999000999001"
                     /psig="0.999000999001"
                     /xcortree=1163
                     /SigmaFactorBS="gaattttttcttgcccgagtgagactATCATCttttgtctgg
                     cgggcTCATACATTATAGATAAGTccaagtaggggggattcggttgaacgcggaggag
                     a"
                     /listShort="spoVR"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    939834..939852
                     /Source="Nicolas_upshift_promotors"
                     /id="U741"
                     /multdbtbs="SigE"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.999000999001"
                     /psig="0.999000999001"
                     /xcortree=1163
                     /SigmaFactorBS="gaattttttcttgcccgagtgagactATCATCttttgtctgg
                     cgggcTCATACATTATAGATAAGTccaagtaggggggattcggttgaacgcggaggag
                     a"
                     /listShort="spoVR"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        939847
                     /Source="Nicolas_upshifts"
                     /id="U741"
                     /multdbtbs="SigE"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.999000999001"
                     /psig="0.999000999001"
                     /xcortree=1163
                     /SigmaFactorBS="gaattttttcttgcccgagtgagactATCATCttttgtctgg
                     cgggcTCATACATTATAGATAAGTccaagtaggggggattcggttgaacgcggaggag
                     a"
                     /listShort="spoVR"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             939872..941278
                     /gene="spoVR"
                     /locus_tag="BSU_09400"
                     /old_locus_tag="BSU09400"
                     /function="16.13: Shape"
                     /experiment="publication(s) with functional evidences,
                     PMID:8144469, 14680823"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 8144469, 14680823;
                     Product type ph: phenotype"
                     /codon_start=1
                     /transl_table=11
                     /product="involved in spore cortex synthesis (stage V
                     sporulation, conserved in non sporulating bacteria"
                     /protein_id="NP_388821.1"
                     /db_xref="EnsemblGenomes-Gn:BSU09400"
                     /db_xref="EnsemblGenomes-Tr:CAB12779"
                     /db_xref="GOA:P37875"
                     /db_xref="InterPro:IPR007390"
                     /db_xref="SubtiList:BG10182"
                     /db_xref="UniProtKB/Swiss-Prot:P37875"
                     /translation="MNAEEKKGLQRAIEEITEIAKGFGLDFYPMRYEICPAEIIYTFG
                     AYGMPTRFSHWSFGKQFHKMKLHYDLGLSKIYELVINSDPCYAFLLDSNSLIQNKLIV
                     AHVLAHCDFFKNNCRFQNTKRDMVESMAATAERIKHYEQVHGIKEVESFLDAILSIQE
                     HIDPSLVRPKLQWSVDDEEEEIEEAATPYDDLWSLDEKKPKKQVKKSKKPFPPRPEKD
                     ILLFIEEHSRELEPWQRDILTMMREEMLYFWPQLETKIMNEGWASYWHQRIIRELDLT
                     SDEAIEFAKLNAGVVQPSKTGINPYYLGLKIFEDIEKRYNNPTEEMKKMGVQPDSGRE
                     KMFEVREIESDISFIRNYLTKELVMREDLYLFQKQGRDYKIIDKQWKSVRDQLVSMRV
                     NGGFPYLTVNDGDYMKNNELYIKHWYEGIELDLKYLEKVLPYLFQLWGRSVHIESVLE
                     DKEVMFSYDGKGVHRRYL*"
                     /label="spoVR CDS"
     gene            939872..941278
                     /gene="spoVR"
                     /locus_tag="BSU_09400"
                     /old_locus_tag="BSU09400"
                     /label="spoVR gene"
     downshifts      941258
                     /Source="Nicolas_upshifts"
                     /id="D490"
                     /incds=0
                     /nref=43
                     /ntot=84
                     /MaxReadThrough="1.30719"
                     /MaxDrop="6.74388"
                     /score="26.4488835"
                     /energy="-11.5"
                     /TU="NA"
                     /idTUdmin="U741"
                     /TUdmin=0
                     /isTUend="TRUE"
                     /label="downshifts"
     CDS             complement(941308..942693)
                     /gene="phoA"
                     /locus_tag="BSU_09410"
                     /old_locus_tag="BSU09410"
                     /EC_number="3.1.3.1"
                     /function="16.11: Scavenge (Catabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:8830275, 10913081, 12897025, 16491025"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 8830275, 10913081,
                     12897025, 16491025; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="alkaline phosphatase A"
                     /protein_id="NP_388822.2"
                     /db_xref="EnsemblGenomes-Gn:BSU09410"
                     /db_xref="EnsemblGenomes-Tr:CAB12780"
                     /db_xref="GOA:P19406"
                     /db_xref="InterPro:IPR001952"
                     /db_xref="InterPro:IPR017849"
                     /db_xref="InterPro:IPR017850"
                     /db_xref="InterPro:IPR018299"
                     /db_xref="SubtiList:BG10183"
                     /db_xref="UniProtKB/Swiss-Prot:P19406"
                     /translation="MKKMSLFQNMKSKLLPIAAVSVLTAGIFAGAELQQTEKASAKKQ
                     DKAEIRNVIVMIGDGMGTPYIRAYRSMKNNGDTPNNPKLTEFDRNLTGMMMTHPDDPD
                     YNITDSAAAGTALATGVKTYNNAIGVDKNGKKVKSVLEEAKQQGKSTGLVATSEINHA
                     TPAAYGAHNESRKNMDQIANSYMDDKIKGKHKIDVLLGGGKSYFNRKDRNLTKEFKQA
                     GYSYVTTKQALKKNKDQQVLGLFADGGLAKALDRDSKTPSLKDMTVSAIDRLNQNKKG
                     FFLMVEGSQIDWAAHDNDTVGAMSEVKDFEQAYKAAIEFAKKDKHTLVIATADHTTGG
                     FTIGANGEKNWHAEPILSAKKTPEFMAKKISEGKPVKDVLARYANLKVTSEEIKSVEA
                     AAQADKSKGASKAIIKIFNTRSNSGWTSTDHTGEEVPVYAYGPGKEKFRGLINNTDQA
                     NIIFKILKTGK*"
                     /label="phoA CDS"
     gene            complement(941308..942693)
                     /gene="phoA"
                     /locus_tag="BSU_09410"
                     /old_locus_tag="BSU09410"
                     /label="phoA gene"
     downshifts      complement(941334)
                     /Source="Nicolas_upshifts"
                     /id="D491"
                     /incds=0
                     /nref=51
                     /ntot=178
                     /MaxReadThrough="1.90638"
                     /MaxDrop="5.795"
                     /score="22.2126775"
                     /energy="-13.2"
                     /TU="NA"
                     /idTUdmin="U742"
                     /TUdmin=0
                     /isTUend="TRUE"
                     /label="downshifts"
     upshifts        complement(942720)
                     /Source="Nicolas_upshifts"
                     /id="U742"
                     /multdbtbs="SigA"
                     /comp="M6"
                     /sig="Sig-"
                     /pcomp="0.94105894105894"
                     /psig="0.035964035964036"
                     /xcortree=8
                     /SigmaFactorBS="acaaggctttacttattgtttacatgatcaacagccgcaTTT
                     AACAAAGTTtccctaacatgataaacggaatacattaaaggaggcatgaaaaaaatga
                     g"
                     /listShort="phoA"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     S_feature       complement(942722..944253)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1018497_1020028_c"
                     /HighExp="Etha, Salt, B60, Heat, M9-stat, T5.0H, T0.30H,
                     T4.0H, T3.30H, T2.30H"
                     /AntisenseName="lytE"
                     /AntisenseCor="-0.65081062481616203"
                     /AntisenseRegPval="-33.1"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigWXY, SigA"
                     /TUshortPSig="0.966, 0.992"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S327"
     misc_feature    complement(942730..942741)
                     /Source="Nicolas_upshift_promotors"
                     /id="U742"
                     /multdbtbs="SigA"
                     /comp="M6"
                     /sig="Sig-"
                     /pcomp="0.94105894105894"
                     /psig="0.035964035964036"
                     /xcortree=8
                     /SigmaFactorBS="acaaggctttacttattgtttacatgatcaacagccgcaTTT
                     AACAAAGTTtccctaacatgataaacggaatacattaaaggaggcatgaaaaaaatga
                     g"
                     /listShort="phoA"
                     /GFF_Attribute="listLong"
                     /label="promotor_single_box"
                     /note="Geneious type: promotor_single_box"
     promotor_-35    942849..942856
                     /Source="Nicolas_upshift_promotors"
                     /id="U743"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.564435564435564"
                     /psig="0.999000999001"
                     /xcortree=3050
                     /SigmaFactorBS="ttatttgatgtaaagcattcatttttcagaaaaaTCTTTACC
                     tctctgtctttgCATGATATGTTTGTTTAAATaaaaaaactgcggataaccacagctc
                     t"
                     /listShort="S328, lytE"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    942869..942888
                     /Source="Nicolas_upshift_promotors"
                     /id="U743"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.564435564435564"
                     /psig="0.999000999001"
                     /xcortree=3050
                     /SigmaFactorBS="ttatttgatgtaaagcattcatttttcagaaaaaTCTTTACC
                     tctctgtctttgCATGATATGTTTGTTTAAATaaaaaaactgcggataaccacagctc
                     t"
                     /listShort="S328, lytE"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     S_feature       942875..943162
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1018650_1018937"
                     /HighExp="T-5.40H, Cold, LoTm, T-4.40H, UNK1, T5.0H,
                     GM-0.1, T3.30H, S1, T4.0H"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.999"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S328"
     upshifts        942875
                     /Source="Nicolas_upshifts"
                     /id="U743"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.564435564435564"
                     /psig="0.999000999001"
                     /xcortree=3050
                     /SigmaFactorBS="ttatttgatgtaaagcattcatttttcagaaaaaTCTTTACC
                     tctctgtctttgCATGATATGTTTGTTTAAATaaaaaaactgcggataaccacagctc
                     t"
                     /listShort="S328, lytE"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    943125..943128
                     /Source="Nicolas_upshift_promotors"
                     /id="U744"
                     /multdbtbs="SigA"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.75924075924076"
                     /psig="0.971028971028971"
                     /xcortree=3027
                     /SigmaFactorBS="atttgtcacatgaagtcaagaCTATttctgatgggaatcTAT
                     CCTTATAATAGAAATCAataagattaatttaaaaaaagagatacatatatatagagtt
                     a"
                     /listShort="lytE"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    943143..943162
                     /Source="Nicolas_upshift_promotors"
                     /id="U744"
                     /multdbtbs="SigA"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.75924075924076"
                     /psig="0.971028971028971"
                     /xcortree=3027
                     /SigmaFactorBS="atttgtcacatgaagtcaagaCTATttctgatgggaatcTAT
                     CCTTATAATAGAAATCAataagattaatttaaaaaaagagatacatatatatagagtt
                     a"
                     /listShort="lytE"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        943164
                     /Source="Nicolas_upshifts"
                     /id="U744"
                     /multdbtbs="SigA"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.75924075924076"
                     /psig="0.971028971028971"
                     /xcortree=3027
                     /SigmaFactorBS="atttgtcacatgaagtcaagaCTATttctgatgggaatcTAT
                     CCTTATAATAGAAATCAataagattaatttaaaaaaagagatacatatatatagagtt
                     a"
                     /listShort="lytE"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             943223..944227
                     /gene="lytE"
                     /locus_tag="BSU_09420"
                     /old_locus_tag="BSU09420"
                     /EC_number="3.4.-.-"
                     /function="16.13: Shape"
                     /experiment="publication(s) with functional evidences,
                     PMID:16855244, 16950129, 9457885, 21541672, 22139507,
                     27002131"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 16855244, 16950129,
                     9457885, 21541672, 22139507, 27002131; Product type e :
                     enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="cell wall dl-endopeptidase;
                     phosphatase-associated protein (major autolysin)"
                     /protein_id="NP_388823.2"
                     /db_xref="EnsemblGenomes-Gn:BSU09420"
                     /db_xref="EnsemblGenomes-Tr:CAB12781"
                     /db_xref="GOA:P54421"
                     /db_xref="InterPro:IPR000064"
                     /db_xref="InterPro:IPR018392"
                     /db_xref="InterPro:IPR036779"
                     /db_xref="SubtiList:BG11406"
                     /db_xref="UniProtKB/Swiss-Prot:P54421"
                     /translation="MKKQIITATTAVVLGSTLFAGAASAQSIKVKKGDTLWDLSRKYD
                     TTISKIKSENHLRSDIIYVGQTLSINGKSTSSKSSSSSSSSSTYKVKSGDSLWKISKK
                     YGMTINELKKLNGLKSDLLRVGQVLKLKGSTSSSSSSSSKVSSSSTSTYKVKSGDSLS
                     KIASKYGTTVSKLKSLNGLKSDVIYVNQVLKVKGTSTSSSKPASSSSSSSSKTSSTSL
                     NVSKLVSDAKALVGTPYKWGGTTTSGFDCSGFIWYVLNKQTSVGRTSTAGYWSSMKSI
                     ASPSVGDFVFFTTYKSGPSHMGIYIGNNSFIHAGSDGVQISSLNNSYWKPRYLGAKRF
                     *"
                     /label="lytE CDS"
     gene            943223..944227
                     /gene="lytE"
                     /locus_tag="BSU_09420"
                     /old_locus_tag="BSU09420"
                     /label="lytE gene"
     downshifts      944089
                     /Source="Nicolas_upshifts"
                     /id="D492"
                     /incds=1
                     /nref=1
                     /ntot=117
                     /MaxReadThrough="6.89938"
                     /MaxDrop="2.1687"
                     /score="26.3320532"
                     /energy="-9.8"
                     /TU="U743,U744"
                     /idTUdmin="U743"
                     /TUdmin="-132"
                     /isTUend="FALSE"
                     /label="downshifts"
     downshifts      944219
                     /Source="Nicolas_upshifts"
                     /id="D493"
                     /incds=0
                     /nref=53
                     /ntot=190
                     /MaxReadThrough="3.64545"
                     /MaxDrop="6.08377"
                     /score="26.3320532"
                     /energy="-9.8"
                     /TU="U744"
                     /idTUdmin="U743"
                     /TUdmin="-2"
                     /isTUend="TRUE"
                     /label="downshifts"
     upshifts        complement(944253)
                     /Source="Nicolas_upshifts"
                     /id="U745"
                     /multdbtbs="-"
                     /comp="M9"
                     /sig="SigWXY"
                     /pcomp="0.966033966033966"
                     /psig="0.966033966033966"
                     /xcortree=1640
                     /SigmaFactorBS="acattttcatttttaggAGCAACCAAAacgcctgtgctCCGT
                     CTAATGAAAAAAacccgttccaatgaacgggttttctctaaaaattagaatcttttcg
                     c"
                     /listShort="S327, phoA"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-10    complement(944260..944275)
                     /Source="Nicolas_upshift_promotors"
                     /id="U745"
                     /multdbtbs="-"
                     /comp="M9"
                     /sig="SigWXY"
                     /pcomp="0.966033966033966"
                     /psig="0.966033966033966"
                     /xcortree=1640
                     /SigmaFactorBS="acattttcatttttaggAGCAACCAAAacgcctgtgctCCGT
                     CTAATGAAAAAAacccgttccaatgaacgggttttctctaaaaattagaatcttttcg
                     c"
                     /listShort="S327, phoA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     downshifts      944265
                     /Source="Nicolas_upshifts"
                     /id="D494"
                     /incds=0
                     /nref=1
                     /ntot=47
                     /MaxReadThrough="2.99"
                     /MaxDrop="3.76174"
                     /score="26.3320532"
                     /energy="-9.8"
                     /TU="U744"
                     /idTUdmin="U743"
                     /TUdmin=44
                     /isTUend="FALSE"
                     /label="downshifts"
     promotor_-35    complement(944287..944296)
                     /Source="Nicolas_upshift_promotors"
                     /id="U745"
                     /multdbtbs="-"
                     /comp="M9"
                     /sig="SigWXY"
                     /pcomp="0.966033966033966"
                     /psig="0.966033966033966"
                     /xcortree=1640
                     /SigmaFactorBS="acattttcatttttaggAGCAACCAAAacgcctgtgctCCGT
                     CTAATGAAAAAAacccgttccaatgaacgggttttctctaaaaattagaatcttttcg
                     c"
                     /listShort="S327, phoA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             complement(944298..945173)
                     /gene="citR"
                     /locus_tag="BSU_09430"
                     /old_locus_tag="BSU09430"
                     /function="16.3: Control"
                     /experiment="publication(s) with functional evidences,
                     PMID:8045899, 10869065"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 8045899, 10869065;
                     Product type r: regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator CitR (LysR family)"
                     /protein_id="NP_388824.2"
                     /db_xref="EnsemblGenomes-Gn:BSU09430"
                     /db_xref="EnsemblGenomes-Tr:CAB12782"
                     /db_xref="GOA:P39127"
                     /db_xref="InterPro:IPR000847"
                     /db_xref="InterPro:IPR005119"
                     /db_xref="InterPro:IPR036388"
                     /db_xref="InterPro:IPR036390"
                     /db_xref="SubtiList:BG10853"
                     /db_xref="UniProtKB/Swiss-Prot:P39127"
                     /translation="MDFKWLHTFVTAAKYENFRKTAETLFLSQPTVTVHIKQLEKEIS
                     CKLFERKGRQIQLTDEGRAYLPYALRLLDDYENSMAELHRVRQGYSQTLQLAVSPLIA
                     DTVLPSVMKRYTAMNTETEMAVTIFESAEIASLIKAGEADIGLSCLKVQSSSLSCHCL
                     YKDPVVLVAPPDKRFIEDNEIDAKEVLEQYLLLTHNHPDYWDDLLRQVRMTFPFVRTM
                     KVTQTHITKRFIKEGLGVSFLPLSTVKRELAEKQMIRIPYQSVQLPYAGAYAIALYEN
                     KKEKKFLDFLSHFHF*"
                     /label="citR CDS"
     gene            complement(944298..945173)
                     /gene="citR"
                     /locus_tag="BSU_09430"
                     /old_locus_tag="BSU09430"
                     /label="citR gene"
     promotor_-35    945226..945227
                     /Source="Nicolas_upshift_promotors"
                     /id="U747"
                     /multdbtbs="SigA"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.424575424575425"
                     /psig="0.995004995004995"
                     /xcortree=3081
                     /SigmaFactorBS="atatttttaattaattccctttaaaatattgaTTatttttta
                     aatattatATTTACTATAATAACAGAAAaggatagggggaatacaaatggtacattac
                     g"
                     /listShort="citA, yhdF"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    complement(945239..945258)
                     /Source="Nicolas_upshift_promotors"
                     /id="U746"
                     /multdbtbs="SigA"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.387612387612388"
                     /psig="0.992007992007992"
                     /xcortree=1894
                     /SigmaFactorBS="tccctttaatccgtaatgtaccatttgTATTCCccctatcct
                     tttctGTTATTATAGTAAATATAATatttaaaaaataatcaatattttaaagggaatt
                     a"
                     /listShort="citR, S327"
                     /listLong="phoA"
                     /label="promotor_-10"
     promotor_-10    945244..945263
                     /Source="Nicolas_upshift_promotors"
                     /id="U747"
                     /multdbtbs="SigA"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.424575424575425"
                     /psig="0.995004995004995"
                     /xcortree=3081
                     /SigmaFactorBS="atatttttaattaattccctttaaaatattgaTTatttttta
                     aatattatATTTACTATAATAACAGAAAaggatagggggaatacaaatggtacattac
                     g"
                     /listShort="citA, yhdF"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(945245)
                     /Source="Nicolas_upshifts"
                     /id="U746"
                     /multdbtbs="SigA"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.387612387612388"
                     /psig="0.992007992007992"
                     /xcortree=1894
                     /SigmaFactorBS="tccctttaatccgtaatgtaccatttgTATTCCccctatcct
                     tttctGTTATTATAGTAAATATAATatttaaaaaataatcaatattttaaagggaatt
                     a"
                     /listShort="citR, S327"
                     /listLong="phoA"
                     /label="upshifts"
     upshifts        945254
                     /Source="Nicolas_upshifts"
                     /id="U747"
                     /multdbtbs="SigA"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.424575424575425"
                     /psig="0.995004995004995"
                     /xcortree=3081
                     /SigmaFactorBS="atatttttaattaattccctttaaaatattgaTTatttttta
                     aatattatATTTACTATAATAACAGAAAaggatagggggaatacaaatggtacattac
                     g"
                     /listShort="citA, yhdF"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(945273..945278)
                     /Source="Nicolas_upshift_promotors"
                     /id="U746"
                     /multdbtbs="SigA"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.387612387612388"
                     /psig="0.992007992007992"
                     /xcortree=1894
                     /SigmaFactorBS="tccctttaatccgtaatgtaccatttgTATTCCccctatcct
                     tttctGTTATTATAGTAAATATAATatttaaaaaataatcaatattttaaagggaatt
                     a"
                     /listShort="citR, S327"
                     /listLong="phoA"
                     /label="promotor_-35"
     CDS             945282..946382
                     /gene="citA"
                     /locus_tag="BSU_09440"
                     /old_locus_tag="BSU09440"
                     /EC_number="2.3.3.16"
                     /function="16.2: Construct biomass (Anabolism)"
                     /function="16.10: Respire"
                     /experiment="publication(s) with functional evidences,
                     PMID:4211224, 8045898, 8045899"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 4211224, 8045898,
                     8045899; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="citrate synthase I"
                     /protein_id="NP_388825.2"
                     /db_xref="EnsemblGenomes-Gn:BSU09440"
                     /db_xref="EnsemblGenomes-Tr:CAB12783"
                     /db_xref="GOA:P39119"
                     /db_xref="InterPro:IPR002020"
                     /db_xref="InterPro:IPR016142"
                     /db_xref="InterPro:IPR016143"
                     /db_xref="InterPro:IPR019810"
                     /db_xref="InterPro:IPR024176"
                     /db_xref="InterPro:IPR036969"
                     /db_xref="PDB:2C6X"
                     /db_xref="SubtiList:BG10854"
                     /db_xref="UniProtKB/Swiss-Prot:P39119"
                     /translation="MVHYGLKGITCVETSISHIDGEKGRLIYRGHHAKDIALNHSFEE
                     AAYLILFGKLPSTEELQVFKDKLAAERNLPEHIERLIQSLPNNMDDMSVLRTVVSALG
                     ENTYTFHPKTEEAIRLIAITPSIIAYRKRWTRGEQAIAPSSQYGHVENYYYMLTGEQP
                     SEAKKKALETYMILATEHGMNASTFSARVTLSTESDLVSAVTAALGTMKGPLHGGAPS
                     AVTKMLEDIGEKEHAEAYLKEKLEKGERLMGFGHRVYKTKDPRAEALRQKAEEVAGND
                     RDLDLALHVEAEAIRLLEIYKPGRKLYTNVEFYAAAVMRAIDFDDELFTPTFSASRMV
                     GWCAHVLEQAENNMIFRPSAQYTGAIPEEVLS*"
                     /label="citA CDS"
     gene            945282..946382
                     /gene="citA"
                     /locus_tag="BSU_09440"
                     /old_locus_tag="BSU09440"
                     /label="citA gene"
     promotor_-35    946393..946399
                     /Source="Nicolas_upshift_promotors"
                     /id="U748"
                     /multdbtbs="SigB"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp="0.994005994005994"
                     /psig="0.994005994005994"
                     /xcortree=256
                     /SigmaFactorBS="attcccgaggaagttctttcataacatattttggCGTTTATt
                     catttctgtcgtgTGGTAACGTTCAGTATCAAccacatgtctaggagtgatgaatgtg
                     a"
                     /listShort="yhdF, S329, ctrA, yhdH"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    946414..946432
                     /Source="Nicolas_upshift_promotors"
                     /id="U748"
                     /multdbtbs="SigB"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp="0.994005994005994"
                     /psig="0.994005994005994"
                     /xcortree=256
                     /SigmaFactorBS="attcccgaggaagttctttcataacatattttggCGTTTATt
                     catttctgtcgtgTGGTAACGTTCAGTATCAAccacatgtctaggagtgatgaatgtg
                     a"
                     /listShort="yhdF, S329, ctrA, yhdH"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        946419
                     /Source="Nicolas_upshifts"
                     /id="U748"
                     /multdbtbs="SigB"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp="0.994005994005994"
                     /psig="0.994005994005994"
                     /xcortree=256
                     /SigmaFactorBS="attcccgaggaagttctttcataacatattttggCGTTTATt
                     catttctgtcgtgTGGTAACGTTCAGTATCAAccacatgtctaggagtgatgaatgtg
                     a"
                     /listShort="yhdF, S329, ctrA, yhdH"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             946456..947325
                     /gene="yhdF"
                     /locus_tag="BSU_09450"
                     /old_locus_tag="BSU09450"
                     /EC_number="1.-.-.-"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 10482513, 18643936;
                     Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative NAD(P)-dependent dehydrogenase"
                     /protein_id="NP_388826.1"
                     /db_xref="EnsemblGenomes-Gn:BSU09450"
                     /db_xref="EnsemblGenomes-Tr:CAB12784"
                     /db_xref="GOA:O07575"
                     /db_xref="InterPro:IPR002347"
                     /db_xref="InterPro:IPR020904"
                     /db_xref="InterPro:IPR036291"
                     /db_xref="SubtiList:BG13012"
                     /db_xref="UniProtKB/Swiss-Prot:O07575"
                     /translation="MNPMDRQTEGQEPQHQDRQPGIESKMNPLPLSEDEDYRGSGKLK
                     GKVAIITGGDSGIGRAAAIAFAKEGADISILYLDEHSDAEETRKRIEKENVRCLLIPG
                     DVGDENHCEQAVQQTVDHFGKLDILVNNAAEQHPQDSILNISTEQLEKTFRTNIFSMF
                     HMTKKALPHLQEGCAIINTTSITAYEGDTALIDYSSTKGAIVSFTRSMAKSLADKGIR
                     VNAVAPGPIWTPLIPATFPEEKVKQHGLDTPMGRPGQPVEHAGAYVLLASDESSYMTG
                     QTIHVNGGRFIST*"
                     /label="yhdF CDS"
     gene            946456..947325
                     /gene="yhdF"
                     /locus_tag="BSU_09450"
                     /old_locus_tag="BSU09450"
                     /label="yhdF gene"
     downshifts      947333
                     /Source="Nicolas_upshifts"
                     /id="D495"
                     /incds=0
                     /nref=27
                     /ntot=130
                     /MaxReadThrough="8.65426"
                     /MaxDrop="6.48064"
                     /score="18.1511963"
                     /energy="-8.2"
                     /TU="U748"
                     /idTUdmin="U747"
                     /TUdmin=9
                     /isTUend="TRUE"
                     /label="downshifts"
     promotor_-35    947410..947413
                     /Source="Nicolas_upshift_promotors"
                     /id="U749"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.597402597402597"
                     /psig="0.998001998001998"
                     /xcortree=2903
                     /SigmaFactorBS="tgaaaaatttcaaaataaaaaatttgtcgatttttctaacaa
                     tttTGTTttcatttttgcaatTTTATATATAATATTGAGTAggagaaaggaatgattc
                     g"
                     /listShort="S329, ctrA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     upshifts        947425
                     /Source="Nicolas_upshifts"
                     /id="U749"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.597402597402597"
                     /psig="0.998001998001998"
                     /xcortree=2903
                     /SigmaFactorBS="tgaaaaatttcaaaataaaaaatttgtcgatttttctaacaa
                     tttTGTTttcatttttgcaatTTTATATATAATATTGAGTAggagaaaggaatgattc
                     g"
                     /listShort="S329, ctrA"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-10    947428..947447
                     /Source="Nicolas_upshift_promotors"
                     /id="U749"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.597402597402597"
                     /psig="0.998001998001998"
                     /xcortree=2903
                     /SigmaFactorBS="tgaaaaatttcaaaataaaaaatttgtcgatttttctaacaa
                     tttTGTTttcatttttgcaatTTTATATATAATATTGAGTAggagaaaggaatgattc
                     g"
                     /listShort="S329, ctrA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     misc_feature    947473..947492
                     /Source="Nicolas_upshift_promotors"
                     /id="U750"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.509490509490509"
                     /psig="0.522477522477522"
                     /xcortree=652
                     /SigmaFactorBS="tttttgcaattttatatataatattgagtaggagaaaggaat
                     gattcgcgaccagTACAAATATAGTAGAAAAAAaagaataatgaccattgttactcat
                     g"
                     /listShort="S329, ctrA"
                     /GFF_Attribute="listLong"
                     /label="promotor_single_box"
                     /note="Geneious type: promotor_single_box"
     S_feature       947478..947574
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1023253_1023349"
                     /HighExp="Etha, T2.30H, T-0.40H, T2.0H, T1.30H, S1,
                     GM-0.2, T3.0H, T-1.40H, M9-stat"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="0.27332800000000002"
                     /TUshortSig="SigA, SigA, SigB"
                     /TUshortPSig="0.522, 0.998, 0.994"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S329"
     upshifts        947478
                     /Source="Nicolas_upshifts"
                     /id="U750"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.509490509490509"
                     /psig="0.522477522477522"
                     /xcortree=652
                     /SigmaFactorBS="tttttgcaattttatatataatattgagtaggagaaaggaat
                     gattcgcgaccagTACAAATATAGTAGAAAAAAaagaataatgaccattgttactcat
                     g"
                     /listShort="S329, ctrA"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             947575..948972
                     /gene="bcaP"
                     /locus_tag="BSU_09460"
                     /old_locus_tag="BSU09460"
                     /function="16.1: Circulate"
                     /experiment="publication(s) with functional evidences,
                     PMID:15849754, 16621821, 16850406, 21097623, 25645558"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 15849754, 16621821,
                     16850406, 21097623, 25645558; Product type t :
                     transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="branched-chain amino acid transporter or
                     methylthioribose-degradation metabolite exporter"
                     /protein_id="NP_388827.1"
                     /db_xref="EnsemblGenomes-Gn:BSU09460"
                     /db_xref="EnsemblGenomes-Tr:CAB12785"
                     /db_xref="GOA:O07576"
                     /db_xref="InterPro:IPR002293"
                     /db_xref="InterPro:IPR004758"
                     /db_xref="SubtiList:BG13013"
                     /db_xref="UniProtKB/Swiss-Prot:O07576"
                     /translation="MKGSVFRKKSIQDLIAATSGEKSLKRELGAFDLTLLGIGAIIGT
                     GIFVLTGTGAVTAGPGLTISFVVAALACLFAALSYAEFASSVPVSGSVYTFTYATLGE
                     LMAFIIGWDLILEYMLAVSAVSVGWSGYFQSFLSGLGIHLPVALTAAPGAVKGTFTLF
                     NLPAFVIVMAITYLLYLGIKESKRVNNIMVILKILVVLLFIAVAAVYVKPHNWQPFMP
                     MGFGGVFSAAALVFFAFIGFDAVSSAAEETKNPAKDLPKGIIFSLLVCTILYVTVSAI
                     MTGVIPFAQFAGVDHPVSLVLQSAGQNWVAGIIDIGAVLGMTTVMLVMLYGQTRVMFA
                     MSRDGLVPGSLSKVHPKHKTPYVATWFFGTMSALLGSLVPLDELAKLVNIGTLSAFVL
                     ISVAVIVLRKKQPDLPRAFKCPGVPVIPGLAILFCLFLILNLGWVTIVRFLVWLLIGL
                     VIYFLYSRKHSKLNQ*"
                     /label="bcaP CDS"
     gene            947575..948972
                     /gene="bcaP"
                     /locus_tag="BSU_09460"
                     /old_locus_tag="BSU09460"
                     /label="bcaP gene"
     downshifts      948952
                     /Source="Nicolas_upshifts"
                     /id="D496"
                     /incds=0
                     /nref=116
                     /ntot=188
                     /MaxReadThrough="3.41176"
                     /MaxDrop="5.29633"
                     /score="5.08283681"
                     /energy="-12.3"
                     /TU="U748,U749"
                     /idTUdmin="U750"
                     /TUdmin=0
                     /isTUend="TRUE"
                     /label="downshifts"
     promotor_-35    949033..949037
                     /Source="Nicolas_upshift_promotors"
                     /id="U751"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.914085914085914"
                     /psig=1
                     /xcortree=2512
                     /SigmaFactorBS="ggccgcctcttttctgttcttggcaaatgaatcTATAGaaat
                     gaagacaaaaaTAAGAGATAATATAGGCTGGaaaggaagtgacgtttattgtctgagc
                     a"
                     /listShort="yhdH"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    949053..949072
                     /Source="Nicolas_upshift_promotors"
                     /id="U751"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.914085914085914"
                     /psig=1
                     /xcortree=2512
                     /SigmaFactorBS="ggccgcctcttttctgttcttggcaaatgaatcTATAGaaat
                     gaagacaaaaaTAAGAGATAATATAGGCTGGaaaggaagtgacgtttattgtctgagc
                     a"
                     /listShort="yhdH"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        949060
                     /Source="Nicolas_upshifts"
                     /id="U751"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.914085914085914"
                     /psig=1
                     /xcortree=2512
                     /SigmaFactorBS="ggccgcctcttttctgttcttggcaaatgaatcTATAGaaat
                     gaagacaaaaaTAAGAGATAATATAGGCTGGaaaggaagtgacgtttattgtctgagc
                     a"
                     /listShort="yhdH"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             949090..950445
                     /gene="yhdH"
                     /locus_tag="BSU_09470"
                     /old_locus_tag="BSU09470"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 15849754, 16850406,
                     17114254; Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="putative sodium-dependent transporter"
                     /protein_id="NP_388828.1"
                     /db_xref="EnsemblGenomes-Gn:BSU09470"
                     /db_xref="EnsemblGenomes-Tr:CAB12786"
                     /db_xref="GOA:O07577"
                     /db_xref="InterPro:IPR000175"
                     /db_xref="SubtiList:BG13014"
                     /db_xref="UniProtKB/Swiss-Prot:O07577"
                     /translation="MSEQKPVQWASKIGFVMAAAGSAIGLGAIWKFPYVAGTNGGGAF
                     FLIFVLFTILLGYPLLVGEFIFGRRNQTNAIDAYKKEAPRSAWFLTGWIGVAACFLVL
                     SFYSVIGGWILLYIVKTASGSLSGLSQAQYGALFASIIQNPVQTLAAQLVFMALTVLV
                     VARGVQKGIERVSAVMMPILFLLFILLVLRSLTLNGAMEGVKFLLVPHFGDLTPESIL
                     FALGQAFFTLTLGVSVMVTYSSYLPKTQNIPRSAASIVLMNIIVTLLAGLAIFPAVFS
                     FGFQPNEGPTLLFTVLPAVFEQLPFGTLFFIGFLVAFLFAALTSAFSMVEIIVATIGK
                     GDEKKRKKLSWTSGLLIFLVGIPCCLSYGVLSDVHLFGKTFFDIADFTVSNVLMPSGA
                     LLISLFIPLKISKSELLAEMRNGSNAGKAFFYTWFYLLRFIVPLAIIIVFLNLIGILS
                     F*"
                     /label="yhdH CDS"
     gene            949090..950445
                     /gene="yhdH"
                     /locus_tag="BSU_09470"
                     /old_locus_tag="BSU09470"
                     /label="yhdH gene"
     downshifts      950426
                     /Source="Nicolas_upshifts"
                     /id="D497"
                     /incds=0
                     /nref=184
                     /ntot=244
                     /MaxReadThrough="1.73756"
                     /MaxDrop="6.09379"
                     /score="40.1809389"
                     /energy="-14.8"
                     /TU="NA"
                     /idTUdmin="U751"
                     /TUdmin=0
                     /isTUend="TRUE"
                     /label="downshifts"
     CDS             complement(950480..951889)
                     /gene="yhdI"
                     /locus_tag="BSU_09480"
                     /old_locus_tag="BSU09480"
                     /function="16.3: Control"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 15223311; Product type
                     r: regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="putative PLP-dependent transcriptional
                     regulator"
                     /protein_id="NP_388829.1"
                     /db_xref="EnsemblGenomes-Gn:BSU09480"
                     /db_xref="EnsemblGenomes-Tr:CAB12787"
                     /db_xref="GOA:O07578"
                     /db_xref="InterPro:IPR000524"
                     /db_xref="InterPro:IPR004839"
                     /db_xref="InterPro:IPR015421"
                     /db_xref="InterPro:IPR015422"
                     /db_xref="InterPro:IPR015424"
                     /db_xref="InterPro:IPR036388"
                     /db_xref="InterPro:IPR036390"
                     /db_xref="SubtiList:BG13015"
                     /db_xref="UniProtKB/Swiss-Prot:O07578"
                     /translation="MDITPFLDKKSKTPLYEQLYTFFKQEISHARITKGTRLPSKRRL
                     SSLLDVSTATIERAYEQLTAEGYVKSKPKIGWFAAEVEPGFPTAPDHFQQSVQPGLHQ
                     KNAPAIDFHQGSVDPTLFPFNAWRKSIVKSLDRYSGSFHTSGDPQGEYELRHMIARFV
                     RLSRGVNCEPGQIIIGAGTTVLLQNLCLSLKPGTKIGFEEPGFHRSRRMFEANHMDVT
                     PICSDAEGVLPDELYRQNPYLMYTTPSHQFPIGTIMTITRRQELLAWAAETNSFIIED
                     DYDGEFRYSGHPIPSLQGLDPNGRVIYLGTFSKSLLPSLRLSFMIVPPELMEPIQNNV
                     QLMKQTVSAHSQLALADFIETGEWQKHINRMRSLYRKKHAVLLEAIRSELGNTVEILG
                     KNSGLHILLRLLFPASEEEAIQAAADHGVTLYPVSPSYIEQTPFTSVLIGYGGLSEED
                     IRLGIQKLKTAWAPLISSY*"
                     /label="yhdI CDS"
     gene            complement(950480..951889)
                     /gene="yhdI"
                     /locus_tag="BSU_09480"
                     /old_locus_tag="BSU09480"
                     /label="yhdI gene"
     promotor_-35    951938..951941
                     /Source="Nicolas_upshift_promotors"
                     /id="U752"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.52047952047952"
                     /psig="0.996003996003996"
                     /xcortree=459
                     /SigmaFactorBS="tcctttgtagctggcatggtcattttttctgatattggctAT
                     TTggcaaatgccatttATTAGCTATGATCATTGTAAcgaaaggaaaggggattgagaa
                     g"
                     /listShort="yhdJ"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    951956..951975
                     /Source="Nicolas_upshift_promotors"
                     /id="U752"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.52047952047952"
                     /psig="0.996003996003996"
                     /xcortree=459
                     /SigmaFactorBS="tcctttgtagctggcatggtcattttttctgatattggctAT
                     TTggcaaatgccatttATTAGCTATGATCATTGTAAcgaaaggaaaggggattgagaa
                     g"
                     /listShort="yhdJ"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        951958
                     /Source="Nicolas_upshifts"
                     /id="U752"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.52047952047952"
                     /psig="0.996003996003996"
                     /xcortree=459
                     /SigmaFactorBS="tcctttgtagctggcatggtcattttttctgatattggctAT
                     TTggcaaatgccatttATTAGCTATGATCATTGTAAcgaaaggaaaggggattgagaa
                     g"
                     /listShort="yhdJ"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-10    complement(951960..951979)
                     /Source="Nicolas_upshift_promotors"
                     /id="U753"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.583416583416583"
                     /psig=1
                     /xcortree=2744
                     /SigmaFactorBS="cttctttcgaggttaattgtttcatatggatcaTCTTCtcaa
                     tcccctttcctTTCGTTACAATGATCATAGCtaataaatggcatttgccaaatagcca
                     a"
                     /listShort="yhdI"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(951972)
                     /Source="Nicolas_upshifts"
                     /id="U753"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.583416583416583"
                     /psig=1
                     /xcortree=2744
                     /SigmaFactorBS="cttctttcgaggttaattgtttcatatggatcaTCTTCtcaa
                     tcccctttcctTTCGTTACAATGATCATAGCtaataaatggcatttgccaaatagcca
                     a"
                     /listShort="yhdI"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(951995..951999)
                     /Source="Nicolas_upshift_promotors"
                     /id="U753"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.583416583416583"
                     /psig=1
                     /xcortree=2744
                     /SigmaFactorBS="cttctttcgaggttaattgtttcatatggatcaTCTTCtcaa
                     tcccctttcctTTCGTTACAATGATCATAGCtaataaatggcatttgccaaatagcca
                     a"
                     /listShort="yhdI"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             951999..952427
                     /gene="yhdJ"
                     /locus_tag="BSU_09490"
                     /old_locus_tag="BSU09490"
                     /function="16.8: Protect"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 12793527; Product type
                     e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative acetyltransferase"
                     /protein_id="NP_388830.1"
                     /db_xref="EnsemblGenomes-Gn:BSU09490"
                     /db_xref="EnsemblGenomes-Tr:CAB12788"
                     /db_xref="GOA:O07579"
                     /db_xref="InterPro:IPR000182"
                     /db_xref="InterPro:IPR016181"
                     /db_xref="SubtiList:BG13016"
                     /db_xref="UniProtKB/Swiss-Prot:O07579"
                     /translation="MIHMKQLTSKEEWAESYPIMSELRTELDIETYLQRLEACVQKES
                     YMLFALYENTAIRALCGALPRVSIHKGEHLWIADLVTTAPCRSKGYGKMLLDYASDWA
                     RKAGLGFVSLSSGLQRKDAHRFYTDKMGFTIESYLFRKPV*"
                     /label="yhdJ CDS"
     gene            951999..952427
                     /gene="yhdJ"
                     /locus_tag="BSU_09490"
                     /old_locus_tag="BSU09490"
                     /label="yhdJ gene"
     downshifts      952406
                     /Source="Nicolas_upshifts"
                     /id="D498"
                     /incds=0
                     /nref=46
                     /ntot=213
                     /MaxReadThrough="1.42962"
                     /MaxDrop="4.77191"
                     /score="24.6412105"
                     /energy="-12.1"
                     /TU="NA"
                     /idTUdmin="U752"
                     /TUdmin=0
                     /isTUend="TRUE"
                     /label="downshifts"
     CDS             complement(952458..952748)
                     /gene="asiMB"
                     /locus_tag="BSU_09500"
                     /old_locus_tag="BSU09500"
                     /experiment="publication(s) with functional evidences,
                     PMID:10216858"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 10216858; Product type r:
                     regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="negative regulator of the activity of sigma-M"
                     /protein_id="NP_388831.1"
                     /db_xref="EnsemblGenomes-Gn:BSU09500"
                     /db_xref="EnsemblGenomes-Tr:CAB12789"
                     /db_xref="GOA:O07580"
                     /db_xref="InterPro:IPR020496"
                     /db_xref="SubtiList:BG13017"
                     /db_xref="UniProtKB/Swiss-Prot:O07580"
                     /translation="MELVRIFKEHNVFGWISVGTAVLSLLLLNLAIISNVTFYSYQML
                     PFAMAAVPFGVVELFIKRGRTGPGLLGVILNLFVIICVYTIVSVDTNLQFGF*"
                     /label="asiMB CDS"
     gene            complement(952458..952748)
                     /gene="asiMB"
                     /locus_tag="BSU_09500"
                     /old_locus_tag="BSU09500"
                     /label="asiMB gene"
     downshifts      complement(952482)
                     /Source="Nicolas_upshifts"
                     /id="D499"
                     /incds=0
                     /nref=44
                     /ntot=229
                     /MaxReadThrough="2.66153"
                     /MaxDrop="4.72865"
                     /score="26.7359231"
                     /energy="-11.1"
                     /TU="NA"
                     /idTUdmin="U754"
                     /TUdmin=0
                     /isTUend="TRUE"
                     /label="downshifts"
     CDS             complement(952736..953812)
                     /gene="asiMA"
                     /locus_tag="BSU_09510"
                     /old_locus_tag="BSU09510"
                     /experiment="publication(s) with functional evidences,
                     PMID:10216858"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 10216858; Product type r:
                     regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="negative regulator of the activity of sigma-M"
                     /protein_id="NP_388832.1"
                     /db_xref="EnsemblGenomes-Gn:BSU09510"
                     /db_xref="EnsemblGenomes-Tr:CAB12790"
                     /db_xref="GOA:O07581"
                     /db_xref="InterPro:IPR025672"
                     /db_xref="InterPro:IPR029101"
                     /db_xref="SubtiList:BG13018"
                     /db_xref="UniProtKB/Swiss-Prot:O07581"
                     /translation="MMNEEFKKRFDQYKNGEMSDQEMTAFEEELEKLEVYQELIDSEL
                     EDDNDWDLSISPEKQKAILAYGKRKSYLRISVLAVISTLMILPLCTLGSYLYYGMGGK
                     HSTGNEFMETAAVTVALTMPNVLVDTSGLKSQVKLFGMNTEFPLQKQIGTKTAAVGNE
                     RVEMFYNKVKAPAVNYYDLEVNKTGHYFTHPSNKSEQTTAKAEKTLSTLPEGTVSEVY
                     LSYDRAYPTKDVYNKFKGYDVSFLWNAIETEKNTNKTASTEPLGYPGKDSKFLAALNT
                     KGKSNGDQFINALKFMSKHEKWAQVISKRKDLNVDNRLDYVEKNGVNVYGSVVTGPTK
                     EIQRMLKNKSVKSANVGEVELWNW*"
                     /label="asiMA CDS"
     gene            complement(952736..953812)
                     /gene="asiMA"
                     /locus_tag="BSU_09510"
                     /old_locus_tag="BSU09510"
                     /label="asiMA gene"
     CDS             complement(953802..954293)
                     /gene="sigM"
                     /locus_tag="BSU_09520"
                     /old_locus_tag="BSU09520"
                     /function="16.3: Control"
                     /experiment="publication(s) with functional evidences,
                     PMID:14651641, 14769884"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 14651641, 14769884;
                     Product type r: regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase ECF (extracytoplasmic
                     function)-type sigma factor (sigma(M))"
                     /protein_id="NP_388833.1"
                     /db_xref="EnsemblGenomes-Gn:BSU09520"
                     /db_xref="EnsemblGenomes-Tr:CAB12791"
                     /db_xref="GOA:O07582"
                     /db_xref="InterPro:IPR000838"
                     /db_xref="InterPro:IPR007627"
                     /db_xref="InterPro:IPR013249"
                     /db_xref="InterPro:IPR013324"
                     /db_xref="InterPro:IPR013325"
                     /db_xref="InterPro:IPR014284"
                     /db_xref="InterPro:IPR014296"
                     /db_xref="InterPro:IPR036388"
                     /db_xref="SubtiList:BG13019"
                     /db_xref="UniProtKB/Swiss-Prot:O07582"
                     /translation="MTIDEIYQMYMNDVYRFLLSMTKDKHLAEDLLQETFMRAYIHIH
                     SYDHSKVKPWLFQVARNAFIDYVRKHKKEVTISDDLIGSLFQNAVQSPAHQVEIKEVL
                     TGYMSELPDNYREALTLYYLKELNYKEASHIMNISEANFKSVLFRARQRLKALYNRGV
                     NDE*"
                     /label="sigM CDS"
     gene            complement(953802..954293)
                     /gene="sigM"
                     /locus_tag="BSU_09520"
                     /old_locus_tag="BSU09520"
                     /label="sigM gene"
     S_feature       complement(954294..954396)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1030069_1030171_c"
                     /HighExp="Cold, LBGstat, H2O2, G180, Paraq, Oxctl, G135,
                     HPh, dia15, G150"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig=1
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S330"
     promotor_-10    complement(954385..954404)
                     /Source="Nicolas_upshift_promotors"
                     /id="U754"
                     /multdbtbs="SigA"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.826173826173826"
                     /psig=1
                     /xcortree=2579
                     /SigmaFactorBS="ccctctggaaaaaatgttaaacctttctccgcactATCTttt
                     gcggccatttTTGGGTACTATATAGTAATGgtgtttgattaggtataaaaaagccgtt
                     t"
                     /listShort="S330, sigM, yhdL, yhdK"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(954396)
                     /Source="Nicolas_upshifts"
                     /id="U754"
                     /multdbtbs="SigA"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.826173826173826"
                     /psig=1
                     /xcortree=2579
                     /SigmaFactorBS="ccctctggaaaaaatgttaaacctttctccgcactATCTttt
                     gcggccatttTTGGGTACTATATAGTAATGgtgtttgattaggtataaaaaagccgtt
                     t"
                     /listShort="S330, sigM, yhdL, yhdK"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(954418..954421)
                     /Source="Nicolas_upshift_promotors"
                     /id="U754"
                     /multdbtbs="SigA"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.826173826173826"
                     /psig=1
                     /xcortree=2579
                     /SigmaFactorBS="ccctctggaaaaaatgttaaacctttctccgcactATCTttt
                     gcggccatttTTGGGTACTATATAGTAATGgtgtttgattaggtataaaaaagccgtt
                     t"
                     /listShort="S330, sigM, yhdL, yhdK"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-35    954434..954440
                     /Source="Nicolas_upshift_promotors"
                     /id="U755"
                     /multdbtbs="SigB"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp=1
                     /psig=1
                     /xcortree=224
                     /SigmaFactorBS="tatatagtacccaaaaatggccgcaaaagatagtgcggagaa
                     aGGTTTAAcattttttccagagGGGAAAAGATAGTGAAAAAgtgaaggagtggcacaa
                     t"
                     /listShort="yhdN, plsC"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     upshifts        954451
                     /Source="Nicolas_upshifts"
                     /id="U755"
                     /multdbtbs="SigB"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp=1
                     /psig=1
                     /xcortree=224
                     /SigmaFactorBS="tatatagtacccaaaaatggccgcaaaagatagtgcggagaa
                     aGGTTTAAcattttttccagagGGGAAAAGATAGTGAAAAAgtgaaggagtggcacaa
                     t"
                     /listShort="yhdN, plsC"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-10    954455..954473
                     /Source="Nicolas_upshift_promotors"
                     /id="U755"
                     /multdbtbs="SigB"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp=1
                     /psig=1
                     /xcortree=224
                     /SigmaFactorBS="tatatagtacccaaaaatggccgcaaaagatagtgcggagaa
                     aGGTTTAAcattttttccagagGGGAAAAGATAGTGAAAAAgtgaaggagtggcacaa
                     t"
                     /listShort="yhdN, plsC"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     downshifts      complement(954484)
                     /Source="Nicolas_upshifts"
                     /id="D500"
                     /incds=0
                     /nref=2
                     /ntot=13
                     /MaxReadThrough="2.13683"
                     /MaxDrop="4.59517"
                     /score="8.96845329"
                     /energy="-10.2"
                     /TU="NA"
                     /idTUdmin="U757"
                     /TUdmin=1804
                     /isTUend="FALSE"
                     /label="downshifts"
     CDS             954490..955485
                     /gene="akrN"
                     /locus_tag="BSU_09530"
                     /old_locus_tag="BSU09530"
                     /EC_number="1.1.1.-"
                     /function="16.11: Scavenge (Catabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:10220166, 15019785, 24330391"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 10220166, 15019785,
                     24330391; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="aldo/keto reductase specific for NADPH;
                     protectsagainst methylglyoxal"
                     /protein_id="NP_388834.1"
                     /db_xref="EnsemblGenomes-Gn:BSU09530"
                     /db_xref="EnsemblGenomes-Tr:CAB12792"
                     /db_xref="GOA:P80874"
                     /db_xref="InterPro:IPR018170"
                     /db_xref="InterPro:IPR020471"
                     /db_xref="InterPro:IPR023210"
                     /db_xref="InterPro:IPR036812"
                     /db_xref="PDB:1PZ1"
                     /db_xref="SubtiList:BG13020"
                     /db_xref="UniProtKB/Swiss-Prot:P80874"
                     /translation="MEYTSIADTGIEASRIGLGTWAIGGTMWGGTDEKTSIETIRAAL
                     DQGITLIDTAPAYGFGQSEEIVGKAIKEYGKRDQVILATKTALDWKNNQLFRHANRAR
                     IVEEVENSLKRLQTDYIDLYQVHWPDPLVPIEETAEVMKELYDAGKIRAIGVSNFSIE
                     QMDTFRAVAPLHTIQPPYNLFEREMEESVLPYAKDNKITTLLYGSLCRGLLTGKMTEE
                     YTFEGDDLRNHDPKFQKPRFKEYLSAVNQLDKLAKTRYGKSVIHLAVRWILDQPGADI
                     ALWGARKPGQLEALSEITGWTLNSEDQKDINTILENTISDPVGPEFMAPPTREEI*"
                     /label="akrN CDS"
     gene            954490..955485
                     /gene="akrN"
                     /locus_tag="BSU_09530"
                     /old_locus_tag="BSU09530"
                     /label="akrN gene"
     downshifts      955464
                     /Source="Nicolas_upshifts"
                     /id="D501"
                     /incds=0
                     /nref=59
                     /ntot=160
                     /MaxReadThrough="6.85446"
                     /MaxDrop="4.90106"
                     /score="10.4379759"
                     /energy="-11.8"
                     /TU="U755"
                     /idTUdmin="U756"
                     /TUdmin="-770"
                     /isTUend="FALSE"
                     /label="downshifts"
     promotor_-35    955547..955550
                     /Source="Nicolas_upshift_promotors"
                     /id="U756"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.537462537462537"
                     /psig=1
                     /xcortree=2186
                     /SigmaFactorBS="ctttttggcgtttaaacgagagaaatcttaaaaattaGTACc
                     aggtaataaaaaaTATTGTTATAATAGATGACAgaaagaatcattgattacgacaaag
                     g"
                     /listShort="plsC"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    955565..955584
                     /Source="Nicolas_upshift_promotors"
                     /id="U756"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.537462537462537"
                     /psig=1
                     /xcortree=2186
                     /SigmaFactorBS="ctttttggcgtttaaacgagagaaatcttaaaaattaGTACc
                     aggtaataaaaaaTATTGTTATAATAGATGACAgaaagaatcattgattacgacaaag
                     g"
                     /listShort="plsC"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        955570
                     /Source="Nicolas_upshifts"
                     /id="U756"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.537462537462537"
                     /psig=1
                     /xcortree=2186
                     /SigmaFactorBS="ctttttggcgtttaaacgagagaaatcttaaaaattaGTACc
                     aggtaataaaaaaTATTGTTATAATAGATGACAgaaagaatcattgattacgacaaag
                     g"
                     /listShort="plsC"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             955620..956219
                     /gene="plsC"
                     /locus_tag="BSU_09540"
                     /old_locus_tag="BSU09540"
                     /EC_number="2.3.1.51"
                     /function="16.13: Shape"
                     /function="16.2: Construct biomass (Anabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:12682299, 1557036, 17557823"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 12682299, 1557036,
                     17557823; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="1-acylglycerol-phosphate (1-acyl-G3P)
                     acyltransferase"
                     /protein_id="NP_388835.1"
                     /db_xref="EnsemblGenomes-Gn:BSU09540"
                     /db_xref="EnsemblGenomes-Tr:CAB12793"
                     /db_xref="GOA:O07584"
                     /db_xref="InterPro:IPR002123"
                     /db_xref="InterPro:IPR004552"
                     /db_xref="SubtiList:BG13021"
                     /db_xref="UniProtKB/Swiss-Prot:O07584"
                     /translation="MYKFCANALKVILSLRGGVKVYNKENLPADSGFVIACTHSGWVD
                     VITLGVGILPYQIHYMAKKELFQNKWIGSFLKKIHAFPVDRENPGPSSIKTPIKLLKE
                     GEIVGIFPSGTRTSEDVPLKRGAVTIAQMGKAPLVPAAYQGPSSGKELFKKGKMKLII
                     GEPLHQADFAHLPSKERLAAMTEALNQRIKELENKLDQL*"
                     /label="plsC CDS"
     gene            955620..956219
                     /gene="plsC"
                     /locus_tag="BSU_09540"
                     /old_locus_tag="BSU09540"
                     /label="plsC gene"
     downshifts      956234
                     /Source="Nicolas_upshifts"
                     /id="D502"
                     /incds=0
                     /nref=189
                     /ntot=245
                     /MaxReadThrough="6.36101"
                     /MaxDrop="7.07164"
                     /score="-7.3088084"
                     /energy="-6.1"
                     /TU="U755"
                     /idTUdmin="U756"
                     /TUdmin=0
                     /isTUend="TRUE"
                     /label="downshifts"
     S_feature       956279..958233
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1032054_1034008"
                     /HighExp="Cold, C30, S8, T-4.40H, Sw, Fru, S0, S7, HPh,
                     G135"
                     /AntisenseName="yhdP"
                     /AntisenseCor="-0.46228251493795502"
                     /AntisenseRegPval="-14.9"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="NA"
                     /TUshortPSig="NA"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S331"
     CDS             complement(956288..957622)
                     /gene="yhdP"
                     /locus_tag="BSU_09550"
                     /old_locus_tag="BSU09550"
                     /function="16.1: Circulate"
                     /function="16.12: Sense"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 10960106, 25182490;
                     Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="putative magnesium efflux pump"
                     /protein_id="NP_388836.1"
                     /db_xref="EnsemblGenomes-Gn:BSU09550"
                     /db_xref="EnsemblGenomes-Tr:CAB12794"
                     /db_xref="GOA:O07585"
                     /db_xref="InterPro:IPR000644"
                     /db_xref="InterPro:IPR002550"
                     /db_xref="InterPro:IPR005170"
                     /db_xref="InterPro:IPR016169"
                     /db_xref="InterPro:IPR036318"
                     /db_xref="SubtiList:BG13022"
                     /db_xref="UniProtKB/Swiss-Prot:O07585"
                     /translation="MDIVNLILVAVLIALTAFFVASEFAIIRIRGSRIDQLIAEGNKA
                     AIAVKKVTTHLDEYLSACQLGITLTSIGLGVLGESTIERLLHPLFVQMNVPGSLSHVI
                     SFIFAYAIITFLHVVVGELAPKTVAIQKAEAVSMLFAKPLIWFYRIAFPFIWLLNNSA
                     RLLTKAFGLETVSENELAHSEEELRIILSESYKSGEINQSEFKYVNKIFEFDDRLAKE
                     IMIPRTEIVSLPHDIKISEMMDIIQIEKYTRYPVEEGDKDNIIGVINIKEVLTACISG
                     EVSVDSTISQFVNPIIHVIESAPIQDLLVKMQKERVHMAILSDEYGGTAGLVTVEDII
                     EEIVGEIRDEFDIDEISEIRKIGEGHYILDGKVLIDQVNDLLGIHLENEEVDTIGGWF
                     LTQKYDVEKDDSIIEEGCEFIINEIDGHHVAYIEVKKLQEEELLETANQQEA*"
                     /label="yhdP CDS"
     gene            complement(956288..957622)
                     /gene="yhdP"
                     /locus_tag="BSU_09550"
                     /old_locus_tag="BSU09550"
                     /label="yhdP gene"
     downshifts      complement(956307)
                     /Source="Nicolas_upshifts"
                     /id="D503"
                     /incds=0
                     /nref=284
                     /ntot=315
                     /MaxReadThrough="1.96991"
                     /MaxDrop="7.22379"
                     /score="11.1466394"
                     /energy="-9.1"
                     /TU="NA"
                     /idTUdmin="U757"
                     /TUdmin="-19"
                     /isTUend="TRUE"
                     /label="downshifts"
     CDS             complement(957683..958114)
                     /gene="cueR"
                     /locus_tag="BSU_09560"
                     /old_locus_tag="BSU09560"
                     /function="16.3: Control"
                     /experiment="publication(s) with functional evidences,
                     PMID:14663075, 18048925"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 14663075, 18048925;
                     Product type r: regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="indirect copper efflux transcriptional
                     regulator"
                     /protein_id="NP_388837.1"
                     /db_xref="EnsemblGenomes-Gn:BSU09560"
                     /db_xref="EnsemblGenomes-Tr:CAB12795"
                     /db_xref="GOA:O07586"
                     /db_xref="InterPro:IPR000551"
                     /db_xref="InterPro:IPR009061"
                     /db_xref="SubtiList:BG13023"
                     /db_xref="UniProtKB/Swiss-Prot:O07586"
                     /translation="MVGRDIDGAETYRISELAALAGVTKRTVDYYTNLGLLTPARSCS
                     NYRYYDENALKRLIFIVDCKKQRLALSDIKDRLENQFPSSAKLDDEIGNLALEIDHMN
                     QNISGILHRFERLKPEDRDKLKSKLPPEKLAVFQSFMLLLS*"
                     /label="cueR CDS"
     gene            complement(957683..958114)
                     /gene="cueR"
                     /locus_tag="BSU_09560"
                     /old_locus_tag="BSU09560"
                     /label="cueR gene"
     promotor_-10    complement(958126..958145)
                     /Source="Nicolas_upshift_promotors"
                     /id="U757"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.410589410589411"
                     /psig="0.965034965034965"
                     /xcortree=2994
                     /SigmaFactorBS="cttccaattccggtctaaaaaaaacaataaACTTGTGcaaga
                     caccgttcaTATATTAAACTATTCTCATAactataacgtgatggttgggagggatata
                     g"
                     /listShort="cueR, yhdP"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(958136)
                     /Source="Nicolas_upshifts"
                     /id="U757"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.410589410589411"
                     /psig="0.965034965034965"
                     /xcortree=2994
                     /SigmaFactorBS="cttccaattccggtctaaaaaaaacaataaACTTGTGcaaga
                     caccgttcaTATATTAAACTATTCTCATAactataacgtgatggttgggagggatata
                     g"
                     /listShort="cueR, yhdP"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(958160..958166)
                     /Source="Nicolas_upshift_promotors"
                     /id="U757"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.410589410589411"
                     /psig="0.965034965034965"
                     /xcortree=2994
                     /SigmaFactorBS="cttccaattccggtctaaaaaaaacaataaACTTGTGcaaga
                     caccgttcaTATATTAAACTATTCTCATAactataacgtgatggttgggagggatata
                     g"
                     /listShort="cueR, yhdP"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_no_box complement(958162..958262)
                     /Source="Nicolas_upshift_promotors"
                     /id="U758"
                     /multdbtbs="-"
                     /comp="M21"
                     /sig="Sig-"
                     /pcomp="0.708291708291708"
                     /psig="0.006993006993007"
                     /xcortree=284
                     /SigmaFactorBS="tccgcatataaaaatttgaaaattctatcttcctatgttact
                     tcaatcagatgatgaattccacaacttccaattccggtctaaaaaaaacaataaactt
                     g"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_no_box"
     promotor_-35    958197..958204
                     /Source="Nicolas_upshift_promotors"
                     /id="U759"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.616383616383616"
                     /psig="0.996003996003996"
                     /xcortree=3066
                     /SigmaFactorBS="ttttttagaccggaattggaagTTGTGGAAttcatcatctga
                     tTGAAGTAACATAGGAAGATAgaattttcaaatttttatatgcggaagggacagatga
                     a"
                     /listShort="yhdR, S332"
                     /listLong="S333, yhdT"
                     /label="promotor_-35"
     upshifts        complement(958202)
                     /Source="Nicolas_upshifts"
                     /id="U758"
                     /multdbtbs="-"
                     /comp="M21"
                     /sig="Sig-"
                     /pcomp="0.708291708291708"
                     /psig="0.006993006993007"
                     /xcortree=284
                     /SigmaFactorBS="tccgcatataaaaatttgaaaattctatcttcctatgttact
                     tcaatcagatgatgaattccacaacttccaattccggtctaaaaaaaacaataaactt
                     g"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-10    958218..958237
                     /Source="Nicolas_upshift_promotors"
                     /id="U759"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.616383616383616"
                     /psig="0.996003996003996"
                     /xcortree=3066
                     /SigmaFactorBS="ttttttagaccggaattggaagTTGTGGAAttcatcatctga
                     tTGAAGTAACATAGGAAGATAgaattttcaaatttttatatgcggaagggacagatga
                     a"
                     /listShort="yhdR, S332"
                     /listLong="S333, yhdT"
                     /label="promotor_-10"
     upshifts        958235
                     /Source="Nicolas_upshifts"
                     /id="U759"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.616383616383616"
                     /psig="0.996003996003996"
                     /xcortree=3066
                     /SigmaFactorBS="ttttttagaccggaattggaagTTGTGGAAttcatcatctga
                     tTGAAGTAACATAGGAAGATAgaattttcaaatttttatatgcggaagggacagatga
                     a"
                     /listShort="yhdR, S332"
                     /listLong="S333, yhdT"
                     /label="upshifts"
     CDS             958271..959452
                     /gene="yhdR"
                     /locus_tag="BSU_09570"
                     /old_locus_tag="BSU09570"
                     /EC_number="2.6.-.-"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 12670965, 15103638;
                     Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative aspartate aminotransferase"
                     /protein_id="NP_388838.1"
                     /db_xref="EnsemblGenomes-Gn:BSU09570"
                     /db_xref="EnsemblGenomes-Tr:CAB12796"
                     /db_xref="GOA:O07587"
                     /db_xref="InterPro:IPR004838"
                     /db_xref="InterPro:IPR004839"
                     /db_xref="InterPro:IPR015421"
                     /db_xref="InterPro:IPR015422"
                     /db_xref="InterPro:IPR015424"
                     /db_xref="SubtiList:BG13024"
                     /db_xref="UniProtKB/Swiss-Prot:O07587"
                     /translation="MKLAGLSREVEENLNKGSWIRKLFDEGARLKKEFGEDQVFDFSL
                     GNPIVEPPEAFKRALIEEAEKGSHGYIQNQGLLAAREKVAQFLGSRFEADFSAERIVM
                     TVGAGGALNVALKSIVNPGEEVIILAPYFAEYKLYIENYGGKAVSCPLTSRFEIDIEA
                     VRQSITPQTKGLILNTPHNPTGTVLSQKNIDDLGALLKEIEEKSGQTIYVLFDEPYSQ
                     LIYDEELANPFQSYHRVILASSFSKDLGIAGERLGYIGLDSRMPDADLLINAFVYCNR
                     TLGFVNAPVMMQRAVARMDDLRVDASAYKERRDLMVDILKEAGFEFEMPKGGFFVFPK
                     SPIEDEVAFCVHAAQKYKLLIVPSSGFGMSGHFRLSFSVPIEQIKNSRDIFISLYKDF
                     A*"
                     /label="yhdR CDS"
     gene            958271..959452
                     /gene="yhdR"
                     /locus_tag="BSU_09570"
                     /old_locus_tag="BSU09570"
                     /label="yhdR gene"
     downshifts      959437
                     /Source="Nicolas_upshifts"
                     /id="D504"
                     /incds=0
                     /nref=12
                     /ntot=180
                     /MaxReadThrough="2.81766"
                     /MaxDrop="3.37889"
                     /score="-5.8634451"
                     /energy="-9.1"
                     /TU="U759"
                     /idTUdmin="U759"
                     /TUdmin="-163"
                     /isTUend="FALSE"
                     /label="downshifts"
     S_feature       959482..959620
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1035257_1035395"
                     /HighExp="Etha, S1, BMM, S2, Cold, MG 45, MG 25, C90,
                     T-5.40H, MG 90"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.996"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S332"
     misc_feature    959616..959635
                     /Source="Nicolas_upshift_promotors"
                     /id="U760"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.771228771228771"
                     /psig="0.999000999001"
                     /xcortree=460
                     /SigmaFactorBS="aaggctttcttcatgataaaagtctaaaaattaaaaatcatt
                     tttggaatgagtTGTGTTACAATAAAATATACaatttataatcaaactttgacttttg
                     g"
                     /listShort="S333, yhdT"
                     /GFF_Attribute="listLong"
                     /label="promotor_single_box"
                     /note="Geneious type: promotor_single_box"
     S_feature       959622..959778
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1035397_1035553"
                     /HighExp="M9-stat, B60, T4.0H, T3.0H, LoTm, S5, T5.0H, S4,
                     T2.30H, T3.30H"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.999"
                     /TUlongSig="SigA"
                     /TUlongPSig="0.996"
                     /label="S333"
     upshifts        959622
                     /Source="Nicolas_upshifts"
                     /id="U760"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.771228771228771"
                     /psig="0.999000999001"
                     /xcortree=460
                     /SigmaFactorBS="aaggctttcttcatgataaaagtctaaaaattaaaaatcatt
                     tttggaatgagtTGTGTTACAATAAAATATACaatttataatcaaactttgacttttg
                     g"
                     /listShort="S333, yhdT"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             959779..961164
                     /gene="yhdT"
                     /locus_tag="BSU_09590"
                     /old_locus_tag="BSU09590"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; Product type m: membrane
                     component"
                     /codon_start=1
                     /transl_table=11
                     /product="putative membrane protein"
                     /protein_id="NP_388840.1"
                     /db_xref="EnsemblGenomes-Gn:BSU09590"
                     /db_xref="EnsemblGenomes-Tr:CAB12798"
                     /db_xref="GOA:O07589"
                     /db_xref="InterPro:IPR000644"
                     /db_xref="InterPro:IPR002550"
                     /db_xref="InterPro:IPR005170"
                     /db_xref="InterPro:IPR016169"
                     /db_xref="InterPro:IPR036318"
                     /db_xref="SubtiList:BG13026"
                     /db_xref="UniProtKB/Swiss-Prot:O07589"
                     /translation="MDDIDSLILIGVLIALTAFFVASEFAIVRVRRSRIDQLITEGNK
                     RAILARRVITDLDEYLSASQLGITLTSIGLGVLGEPAFERLLHPLFEPLGLPDSVSHA
                     VSFAVAYGLITFLHVVVGELAPKTVAIQKAEQLTLLIAGPLRLFYLLLFPFIWILNGS
                     ARLLCGMFGLKPASEHDGSHSEEELRMLLSESLKNGEINPSEYKYVNKIFEFDNRIAK
                     EIMIPRKEMAAVSTEMTMAEMLEVMLKEKYTRWPVTDGDKDSVLGLVNTKHLFSDLLF
                     MTEEERMKMTIHPYVRPVIEVIETIPVHDLLIKMQRERIHMAILSDEYGGTSGLVTTE
                     DILEEIVGEIRDEFDEDEQPLIQKLGDGHYVMDGKVRIDQVNSLLGASIQEDVDTIGG
                     LILKENIDIEAGESIRIGSYTIKVLKMDGRLIKQIDIKEEAGNTTGITAHHKLPLPEP
                     VMLNSATLSEK*"
                     /label="yhdT CDS"
     gene            959779..961164
                     /gene="yhdT"
                     /locus_tag="BSU_09590"
                     /old_locus_tag="BSU09590"
                     /label="yhdT gene"
     downshifts      961054
                     /Source="Nicolas_upshifts"
                     /id="D505"
                     /incds=1
                     /nref=120
                     /ntot=240
                     /MaxReadThrough="5.11037"
                     /MaxDrop="3.79021"
                     /score="19.6985636"
                     /energy="-10.5"
                     /TU="U760"
                     /idTUdmin="U760"
                     /TUdmin="-86"
                     /isTUend="FALSE"
                     /label="downshifts"
     downshifts      961140
                     /Source="Nicolas_upshifts"
                     /id="D506"
                     /incds=0
                     /nref=129
                     /ntot=245
                     /MaxReadThrough="1.68999"
                     /MaxDrop="6.12682"
                     /score="19.6985636"
                     /energy="-10.5"
                     /TU="NA"
                     /idTUdmin="U760"
                     /TUdmin=0
                     /isTUend="TRUE"
                     /label="downshifts"
     CDS             complement(961178..961534)
                     /gene="crcBA"
                     /locus_tag="BSU_09600"
                     /old_locus_tag="BSU09600"
                     /function="16.1: Circulate"
                     /function="16.8: Protect"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 2a: Function from experimental evidences
                     in other organisms; PubMedId: 8844142, 12904550, 15849754,
                     16850406, 17196979, 22194412, 27824896; Product type t:
                     transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="fluoride efflux channel component A"
                     /protein_id="NP_388841.1"
                     /db_xref="EnsemblGenomes-Gn:BSU09600"
                     /db_xref="EnsemblGenomes-Tr:CAB12799"
                     /db_xref="GOA:O07590"
                     /db_xref="InterPro:IPR003691"
                     /db_xref="SubtiList:BG13027"
                     /db_xref="UniProtKB/Swiss-Prot:O07590"
                     /translation="MTLAGIFIGGGLGAMLRFWLGNVITAKTKGLSLPIGILTVNILG
                     ALGLGIFTGLHVANASVSLIIGTGFFGAFTTFSTFSVETIQLLMAKRVKESILYIVLT
                     LCGSLFAFWCGWTITI*"
                     /label="crcBA CDS"
     gene            complement(961178..961534)
                     /gene="crcBA"
                     /locus_tag="BSU_09600"
                     /old_locus_tag="BSU09600"
                     /label="crcBA gene"
     CDS             complement(961531..961926)
                     /gene="crcBB"
                     /locus_tag="BSU_09610"
                     /old_locus_tag="BSU09610"
                     /function="16.1: Circulate"
                     /function="16.4: Excrete"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 2a: Function from experimental evidences
                     in other organisms; PubMedId: 8844142, 12904550, 15849754,
                     16850406, 22194412, 27824896; Product type t :
                     transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="subunit of fluoride efflux transporter"
                     /protein_id="NP_388842.1"
                     /db_xref="EnsemblGenomes-Gn:BSU09610"
                     /db_xref="EnsemblGenomes-Tr:CAB12800"
                     /db_xref="GOA:O07591"
                     /db_xref="InterPro:IPR003691"
                     /db_xref="SubtiList:BG13028"
                     /db_xref="UniProtKB/Swiss-Prot:O07591"
                     /translation="MKIYSAVFIGGALGACLRYGLNLWIHTGQFPAATWLENAAGSLL
                     LGILTGFFMIGAKRPLLSAFLGTGFCGGFTTMSTFSKETVMLLQGQPSLALLYVAASL
                     ISGIIFALIGVFVGRRIAGIQQRKGLQEK*"
                     /label="crcBB CDS"
     gene            complement(961531..961926)
                     /gene="crcBB"
                     /locus_tag="BSU_09610"
                     /old_locus_tag="BSU09610"
                     /label="crcBB gene"
     CDS             complement(961913..962644)
                     /gene="yhdW"
                     /locus_tag="BSU_09620"
                     /old_locus_tag="BSU09620"
                     /EC_number="3.1.4.46"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 8012593; Product type
                     e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative glycerophosphodiester
                     phosphodiesterase"
                     /protein_id="NP_388843.1"
                     /db_xref="EnsemblGenomes-Gn:BSU09620"
                     /db_xref="EnsemblGenomes-Tr:CAB12801"
                     /db_xref="GOA:O07592"
                     /db_xref="InterPro:IPR004129"
                     /db_xref="InterPro:IPR017946"
                     /db_xref="InterPro:IPR030395"
                     /db_xref="SubtiList:BG13029"
                     /db_xref="UniProtKB/Swiss-Prot:O07592"
                     /translation="MYIIAHRGASGYAPENTIAAFDLAVKMNADMIELDVQLTKDRQI
                     VVIHDDRVDRTTNGSGFVKDFTLEELQKLDAGSWYGPAFQGERIPTLEAVLKRYHKKI
                     GLLIELKGHPSQVGIEEEVGQLLGQFSFSINNIVQSFQFRSVQRFRELYPSIPTAVIT
                     RPNFGMLSRNQMKAFRSFANYVNIKHTRLNRLMIGSINKNGLNIFAWTVNNQKTAAKL
                     QAMGVDGIVTDYPDFIIKDGKHENI*"
                     /label="yhdW CDS"
     gene            complement(961913..962644)
                     /gene="yhdW"
                     /locus_tag="BSU_09620"
                     /old_locus_tag="BSU09620"
                     /label="yhdW gene"
     misc_feature    complement(962669..962688)
                     /Source="Nicolas_upshift_promotors"
                     /id="U761"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.683316683316683"
                     /psig="0.986013986013986"
                     /xcortree=3010
                     /SigmaFactorBS="gcccggaccattccgatatggcagaaaaaattcaccagtttg
                     tatcgcggtgcatatatggaTTTGATACAATAACAGAAATgcccatacgaggagctga
                     c"
                     /listShort="yhdW, yhdV, crcBA"
                     /GFF_Attribute="listLong"
                     /label="promotor_single_box"
                     /note="Geneious type: promotor_single_box"
     upshifts        complement(962690)
                     /Source="Nicolas_upshifts"
                     /id="U761"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.683316683316683"
                     /psig="0.986013986013986"
                     /xcortree=3010
                     /SigmaFactorBS="gcccggaccattccgatatggcagaaaaaattcaccagtttg
                     tatcgcggtgcatatatggaTTTGATACAATAACAGAAATgcccatacgaggagctga
                     c"
                     /listShort="yhdW, yhdV, crcBA"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    962737..962745
                     /Source="Nicolas_upshift_promotors"
                     /id="U762"
                     /multdbtbs="-"
                     /comp="M9"
                     /sig="SigWXY"
                     /pcomp="0.563436563436563"
                     /psig="0.563436563436563"
                     /xcortree=896
                     /SigmaFactorBS="atatgcaccgcgatacaaactggtgaattttttctgccatat
                     cGGAATGGTCcgggctgaggaatGCGTATAACTAAAAAAagacactcagcgtatcaga
                     a"
                     /listShort="S334, yhdX"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     upshifts        962754
                     /Source="Nicolas_upshifts"
                     /id="U762"
                     /multdbtbs="-"
                     /comp="M9"
                     /sig="SigWXY"
                     /pcomp="0.563436563436563"
                     /psig="0.563436563436563"
                     /xcortree=896
                     /SigmaFactorBS="atatgcaccgcgatacaaactggtgaattttttctgccatat
                     cGGAATGGTCcgggctgaggaatGCGTATAACTAAAAAAagacactcagcgtatcaga
                     a"
                     /listShort="S334, yhdX"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-10    962759..962774
                     /Source="Nicolas_upshift_promotors"
                     /id="U762"
                     /multdbtbs="-"
                     /comp="M9"
                     /sig="SigWXY"
                     /pcomp="0.563436563436563"
                     /psig="0.563436563436563"
                     /xcortree=896
                     /SigmaFactorBS="atatgcaccgcgatacaaactggtgaattttttctgccatat
                     cGGAATGGTCcgggctgaggaatGCGTATAACTAAAAAAagacactcagcgtatcaga
                     a"
                     /listShort="S334, yhdX"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     S_feature       962768..962841
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1038543_1038616"
                     /HighExp="S5, S4, S6, S7, S8, S3, B60, Pyr, B36, BT"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigWXY"
                     /TUshortPSig="0.563"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S334"
     promotor_-35    962828..962829
                     /Source="Nicolas_upshift_promotors"
                     /id="U763"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.937062937062937"
                     /psig="0.998001998001998"
                     /xcortree=461
                     /SigmaFactorBS="agcgtatcagaacacatttcgtcagaaaattaggtctttcga
                     catGTtcacaacaaaatatgATCCTTTATAATAGCAAAAAaggaggcgagatcatggg
                     a"
                     /listShort="yhdX"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     upshifts        962843
                     /Source="Nicolas_upshifts"
                     /id="U763"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.937062937062937"
                     /psig="0.998001998001998"
                     /xcortree=461
                     /SigmaFactorBS="agcgtatcagaacacatttcgtcagaaaattaggtctttcga
                     catGTtcacaacaaaatatgATCCTTTATAATAGCAAAAAaggaggcgagatcatggg
                     a"
                     /listShort="yhdX"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-10    962845..962864
                     /Source="Nicolas_upshift_promotors"
                     /id="U763"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.937062937062937"
                     /psig="0.998001998001998"
                     /xcortree=461
                     /SigmaFactorBS="agcgtatcagaacacatttcgtcagaaaattaggtctttcga
                     catGTtcacaacaaaatatgATCCTTTATAATAGCAAAAAaggaggcgagatcatggg
                     a"
                     /listShort="yhdX"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     CDS             962878..962985
                     /gene="yhdX"
                     /locus_tag="BSU_09630"
                     /old_locus_tag="BSU09630"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved hypothetical protein"
                     /protein_id="NP_388844.1"
                     /db_xref="EnsemblGenomes-Gn:BSU09630"
                     /db_xref="EnsemblGenomes-Tr:CAB12802"
                     /db_xref="InterPro:IPR035384"
                     /db_xref="SubtiList:BG13030"
                     /db_xref="UniProtKB/Swiss-Prot:O07593"
                     /translation="MGKGRIRVEERIKAETDAEMQKATLLDQTQTKKGK*"
                     /label="yhdX CDS"
     gene            962878..962985
                     /gene="yhdX"
                     /locus_tag="BSU_09630"
                     /old_locus_tag="BSU09630"
                     /label="yhdX gene"
     S_feature       962986..963039
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1038761_1038814"
                     /HighExp="Sw, BC, LPhT, HiOs, S4, HiTm, S5, B36, S7, S6"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="NA"
                     /TUshortPSig="NA"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S335"
     downshifts      963010
                     /Source="Nicolas_upshifts"
                     /id="D507"
                     /incds=0
                     /nref=177
                     /ntot=225
                     /MaxReadThrough="0.97838"
                     /MaxDrop="7.47175"
                     /score="21.9742676"
                     /energy="-14.5"
                     /TU="NA"
                     /idTUdmin="U762"
                     /TUdmin=0
                     /isTUend="TRUE"
                     /label="downshifts"
     misc_feature    963090..963109
                     /Source="Nicolas_upshift_promotors"
                     /id="U764"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.381618381618382"
                     /psig="0.931068931068931"
                     /xcortree=1800
                     /SigmaFactorBS="tttcgccggggttttgtgctgcataagacatttaaatgaaca
                     tccttacgaataTTTTAGTATAATAAACAATTgattgggatagaggggagacagtcat
                     g"
                     /listShort="yhdY, yhdZ"
                     /GFF_Attribute="listLong"
                     /label="promotor_single_box"
                     /note="Geneious type: promotor_single_box"
     upshifts        963096
                     /Source="Nicolas_upshifts"
                     /id="U764"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.381618381618382"
                     /psig="0.931068931068931"
                     /xcortree=1800
                     /SigmaFactorBS="tttcgccggggttttgtgctgcataagacatttaaatgaaca
                     tccttacgaataTTTTAGTATAATAAACAATTgattgggatagaggggagacagtcat
                     g"
                     /listShort="yhdY, yhdZ"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             963134..964249
                     /gene="mscY"
                     /locus_tag="BSU_09640"
                     /old_locus_tag="BSU09640"
                     /function="16.8: Protect"
                     /function="16.12: Sense"
                     /function="16.1: Circulate"
                     /experiment="publication(s) with functional evidences,
                     PMID:12077558, 15849754, 16850406, 17665170, 18310427,
                     19252899"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 12077558, 15849754,
                     16850406, 17665170, 18310427, 19252899; Product type t :
                     transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="small conductance mechano-sensitive channel"
                     /protein_id="NP_388845.1"
                     /db_xref="EnsemblGenomes-Gn:BSU09640"
                     /db_xref="EnsemblGenomes-Tr:CAB12803"
                     /db_xref="GOA:O07594"
                     /db_xref="InterPro:IPR006685"
                     /db_xref="InterPro:IPR006686"
                     /db_xref="InterPro:IPR010920"
                     /db_xref="InterPro:IPR011014"
                     /db_xref="InterPro:IPR011066"
                     /db_xref="SubtiList:BG13031"
                     /db_xref="UniProtKB/Swiss-Prot:O07594"
                     /translation="MPDYLQQYFTLDNIIQIGISLAILLVFLILRKLFTRYFFNLLFN
                     LTNRPKTEIFKQVVLAFDKPARWFFVALGLFLAIRYSPFLDEQMPVISKIYRSLIVAL
                     LCWGLCNLTATSSFIFHKVNQRFELDMDDILAPFLSKLLRFVIIALSVSVIAQEFNYD
                     VNGFVAGLGLGGLAFALAAKDTISNFFGGIIIITEKPFTIGDWVETSTVTGSVEDITF
                     RSTRFRTAQGALVTVPNSTLSMEAITNWTRMTKRQITFSIHVSYATPIENLERSIHSL
                     RTMLLEHEGVDNEIIMVNFDTFADSYYNLFFNFYTKTTVWAENLNIREDINYKIIEIL
                     GAEGVQFAYPGQMVVVKQKHESDQFQVNLNKEEKERA*"
                     /label="mscY CDS"
     gene            963134..964249
                     /gene="mscY"
                     /locus_tag="BSU_09640"
                     /old_locus_tag="BSU09640"
                     /label="mscY gene"
     downshifts      964229
                     /Source="Nicolas_upshifts"
                     /id="D508"
                     /incds=0
                     /nref=5
                     /ntot=141
                     /MaxReadThrough="3.45709"
                     /MaxDrop="3.93891"
                     /score="2.31392404"
                     /energy="-12.3"
                     /TU="U764"
                     /idTUdmin="U764"
                     /TUdmin="-783"
                     /isTUend="FALSE"
                     /label="downshifts"
     misc_feature    964286..964305
                     /Source="Nicolas_upshift_promotors"
                     /id="U765"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.937062937062937"
                     /psig=1
                     /xcortree=3140
                     /SigmaFactorBS="aaagaggaaaaggaacgggcttaaaagagagacttcgtctga
                     cagaggcggagtctttttCATGGTAAAATAAGAGAAAAaggcggtgttgagttggaaa
                     c"
                     /listShort="yhdZ"
                     /GFF_Attribute="listLong"
                     /label="promotor_single_box"
                     /note="Geneious type: promotor_single_box"
     upshifts        964286
                     /Source="Nicolas_upshifts"
                     /id="U765"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.937062937062937"
                     /psig=1
                     /xcortree=3140
                     /SigmaFactorBS="aaagaggaaaaggaacgggcttaaaagagagacttcgtctga
                     cagaggcggagtctttttCATGGTAAAATAAGAGAAAAaggcggtgttgagttggaaa
                     c"
                     /listShort="yhdZ"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             964319..965062
                     /gene="srtN"
                     /locus_tag="BSU_09650"
                     /old_locus_tag="BSU09650"
                     /EC_number="3.5.1.-"
                     /function="16.3: Control"
                     /experiment="publication(s) with functional evidences,
                     PMID:16768447, 19136592, 26708127, 27987242"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 16768447, 19136592,
                     26708127, 27987242; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="sirtuin NAD-dependent deacetylase"
                     /protein_id="NP_388846.1"
                     /db_xref="EnsemblGenomes-Gn:BSU09650"
                     /db_xref="EnsemblGenomes-Tr:CAB12804"
                     /db_xref="GOA:O07595"
                     /db_xref="InterPro:IPR003000"
                     /db_xref="InterPro:IPR026590"
                     /db_xref="InterPro:IPR028628"
                     /db_xref="InterPro:IPR029035"
                     /db_xref="SubtiList:BG13032"
                     /db_xref="UniProtKB/Swiss-Prot:O07595"
                     /translation="METFKSILHEAQRIVVLTGAGMSTESGIPDFRSAGGIWTEDASR
                     MEAMSLDYFLSYPRLFWPKFKELFQMKMSGSFEPNEGHLLLAELEKQGKQVDIFTQNI
                     DGLHKKAGSRHVYELHGSIQTAACPACGARYDLPHLLEREVPECTAAGNNGDICGTVL
                     KTDVVLFGDAVMHFDTLYEKLDQADLLLVIGTSLEVAPARFVPEDASLIPGMKKVIIN
                     LEPTYCDSLFDMVIHQKIGEFARSLGMKK*"
                     /label="srtN CDS"
     gene            964319..965062
                     /gene="srtN"
                     /locus_tag="BSU_09650"
                     /old_locus_tag="BSU09650"
                     /label="srtN gene"
     downshifts      965034
                     /Source="Nicolas_upshifts"
                     /id="D509"
                     /incds=0
                     /nref=3
                     /ntot=82
                     /MaxReadThrough="1.93149"
                     /MaxDrop="2.85561"
                     /score="9.76884826"
                     /energy="-9.2"
                     /TU="NA"
                     /idTUdmin="U765"
                     /TUdmin=0
                     /isTUend="TRUE"
                     /label="downshifts"
     CDS             complement(965086..965934)
                     /gene="yheN"
                     /locus_tag="BSU_09660"
                     /old_locus_tag="BSU09660"
                     /EC_number="3.5.1.-"
                     /function="16.11: Scavenge (Catabolism)"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative polysaccharide deacetylase"
                     /protein_id="NP_388847.1"
                     /db_xref="EnsemblGenomes-Gn:BSU09660"
                     /db_xref="EnsemblGenomes-Tr:CAB12805"
                     /db_xref="GOA:O07596"
                     /db_xref="InterPro:IPR002509"
                     /db_xref="InterPro:IPR011330"
                     /db_xref="SubtiList:BG13046"
                     /db_xref="UniProtKB/Swiss-Prot:O07596"
                     /translation="MRQTRGEASPSAVSLAFKFASLAVLCVLLLLMVILGYSNSSTKA
                     KEVTVTTNGQLRDEKESLKLKNDSPDLLIKHLQTKQNMGDKTVYLTFDDGPSAVTTRL
                     LDVLKSADVKATFFMLSPRMNEFKQAVKRAEKEGHALGLHGVTHNNRLFYQTPTSPLK
                     EMQEARDTLQDITGYKTDLVRTPYGSKPSLTASQIRNLEKDGFVYWDWTIDSMDWKYR
                     NSQYVTAVLQQLENMEHSSSSRPNVILMHDLPATVNALPVLINKLKEKGYSFGVLEDT
                     MVPVHE*"
                     /label="yheN CDS"
     gene            complement(965086..965934)
                     /gene="yheN"
                     /locus_tag="BSU_09660"
                     /old_locus_tag="BSU09660"
                     /label="yheN gene"
     downshifts      complement(965110)
                     /Source="Nicolas_upshifts"
                     /id="D510"
                     /incds=0
                     /nref=126
                     /ntot=242
                     /MaxReadThrough="2.03966"
                     /MaxDrop="4.72968"
                     /score="-7.82934513"
                     /energy="-9.2"
                     /TU="NA"
                     /idTUdmin="U767"
                     /TUdmin=0
                     /isTUend="TRUE"
                     /label="downshifts"
     promotor_-35    965930..965935
                     /Source="Nicolas_upshift_promotors"
                     /id="U766"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.999000999001"
                     /psig="0.999000999001"
                     /xcortree=1125
                     /SigmaFactorBS="cgaaactgcagaaggagaagcctctcctctcgtttgtCGCAT
                     AacaatctctccattgGCATAAAATCTCTACATAAtgctgtacagcaggcagcttatg
                     a"
                     /listShort="S337, S338, dat"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     S_feature       complement(965935..966034)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1041710_1041809_c"
                     /HighExp="Cold, T3.0H, T2.30H, T3.30H, T4.0H, T2.0H, HPh,
                     C30, T1.30H, T5.0H"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig=1
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S336"
     promotor_-10    965951..965969
                     /Source="Nicolas_upshift_promotors"
                     /id="U766"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.999000999001"
                     /psig="0.999000999001"
                     /xcortree=1125
                     /SigmaFactorBS="cgaaactgcagaaggagaagcctctcctctcgtttgtCGCAT
                     AacaatctctccattgGCATAAAATCTCTACATAAtgctgtacagcaggcagcttatg
                     a"
                     /listShort="S337, S338, dat"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        965953
                     /Source="Nicolas_upshifts"
                     /id="U766"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.999000999001"
                     /psig="0.999000999001"
                     /xcortree=1125
                     /SigmaFactorBS="cgaaactgcagaaggagaagcctctcctctcgtttgtCGCAT
                     AacaatctctccattgGCATAAAATCTCTACATAAtgctgtacagcaggcagcttatg
                     a"
                     /listShort="S337, S338, dat"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     S_feature       965958..966153
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1041733_1041928"
                     /HighExp="S5, S4, S6, S3, S7, S8, LoTm, B36, T5.0H, B60"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigEF"
                     /TUshortPSig="0.999"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S337"
     promotor_-10    complement(966023..966042)
                     /Source="Nicolas_upshift_promotors"
                     /id="U767"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.57042957042957"
                     /psig=1
                     /xcortree=2149
                     /SigmaFactorBS="ttttttccttaaaatctgacatttcgacaaattttctATGTg
                     ctttccagttttaTTCCTGTATACTTGACTGGTaatacataggttgtaaacataaggc
                     a"
                     /listShort="S336, yheN"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(966037)
                     /Source="Nicolas_upshifts"
                     /id="U767"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.57042957042957"
                     /psig=1
                     /xcortree=2149
                     /SigmaFactorBS="ttttttccttaaaatctgacatttcgacaaattttctATGTg
                     ctttccagttttaTTCCTGTATACTTGACTGGTaatacataggttgtaaacataaggc
                     a"
                     /listShort="S336, yheN"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(966057..966060)
                     /Source="Nicolas_upshift_promotors"
                     /id="U767"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.57042957042957"
                     /psig=1
                     /xcortree=2149
                     /SigmaFactorBS="ttttttccttaaaatctgacatttcgacaaattttctATGTg
                     ctttccagttttaTTCCTGTATACTTGACTGGTaatacataggttgtaaacataaggc
                     a"
                     /listShort="S336, yheN"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     misc_feature    966152..966171
                     /Source="Nicolas_upshift_promotors"
                     /id="U768"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.99100899100899"
                     /psig=1
                     /xcortree=2940
                     /SigmaFactorBS="aaataaactcctttccgctatagatctcttgatctttctgtt
                     tttcagcttgtccaaTATGGTAGAATTAGTGATAAtgacagcttgaatgacatcaggg
                     a"
                     /listShort="S338, dat"
                     /GFF_Attribute="listLong"
                     /label="promotor_single_box"
                     /note="Geneious type: promotor_single_box"
     S_feature       966155..966218
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1041930_1041993"
                     /HighExp="BC, T2.30H, T3.0H, T3.30H, T4.0H, T5.0H, T2.0H,
                     T1.30H, S4, M9-stat"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA, SigEF"
                     /TUshortPSig="1, 0.999"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S338"
     upshifts        966155
                     /Source="Nicolas_upshifts"
                     /id="U768"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.99100899100899"
                     /psig=1
                     /xcortree=2940
                     /SigmaFactorBS="aaataaactcctttccgctatagatctcttgatctttctgtt
                     tttcagcttgtccaaTATGGTAGAATTAGTGATAAtgacagcttgaatgacatcaggg
                     a"
                     /listShort="S338, dat"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             966219..967067
                     /gene="dat"
                     /locus_tag="BSU_09670"
                     /old_locus_tag="BSU09670"
                     /EC_number="2.6.1.21"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 2a: Function from experimental evidences
                     in other organisms; PubMedId: 9003455, 17005988; Product
                     type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="D-alanine aminotransferase"
                     /protein_id="NP_388848.1"
                     /db_xref="EnsemblGenomes-Gn:BSU09670"
                     /db_xref="EnsemblGenomes-Tr:CAB12806"
                     /db_xref="GOA:O07597"
                     /db_xref="InterPro:IPR001544"
                     /db_xref="InterPro:IPR005784"
                     /db_xref="InterPro:IPR018300"
                     /db_xref="InterPro:IPR036038"
                     /db_xref="SubtiList:BG13045"
                     /db_xref="UniProtKB/Swiss-Prot:O07597"
                     /translation="MKVLVNGRLIGRSEASIDLEDRGYQFGDGIYEVIRVYKGVLFGL
                     REHAERFFRSAAEIGISLPFSIEDLEWDLQKLVQENAVSEGAVYIQTTRGVAPRKHQY
                     EAGLEPQTTAYTFTVKKPEQEQAYGVAAITDEDLRWLRCDIKSLNLLYNVMTKQRAYE
                     AGAFEAILLRDGVVTEGTSSNVYAVINGTVRTHPANRLILNGITRMNILGLIEKNGIK
                     LDETPVSEEELKQAEEIFISSTTAEIIPVVTLDGQSIGSGKPGPVTKQLQAAFQESIQ
                     QAASIS*"
                     /label="dat CDS"
     gene            966219..967067
                     /gene="dat"
                     /locus_tag="BSU_09670"
                     /old_locus_tag="BSU09670"
                     /label="dat gene"
     downshifts      967058
                     /Source="Nicolas_upshifts"
                     /id="D511"
                     /incds=0
                     /nref=232
                     /ntot=261
                     /MaxReadThrough="2.27201"
                     /MaxDrop="6.88888"
                     /score="21.6239924"
                     /energy="-11.5"
                     /TU="U768"
                     /idTUdmin="U766"
                     /TUdmin=0
                     /isTUend="TRUE"
                     /label="downshifts"
     CDS             complement(967110..968471)
                     /gene="nhaC"
                     /locus_tag="BSU_09680"
                     /old_locus_tag="BSU09680"
                     /function="16.1: Circulate"
                     /experiment="publication(s) with functional evidences,
                     PMID:10735849, 11274110, 15849754, 16850406, 17937670"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 10735849, 11274110,
                     15849754, 16850406, 17937670; Product type t :
                     transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="Na+/H+ antiporter"
                     /protein_id="NP_388849.1"
                     /db_xref="EnsemblGenomes-Gn:BSU09680"
                     /db_xref="EnsemblGenomes-Tr:CAB12807"
                     /db_xref="GOA:O07553"
                     /db_xref="InterPro:IPR004770"
                     /db_xref="InterPro:IPR018461"
                     /db_xref="SubtiList:BG13044"
                     /db_xref="UniProtKB/Swiss-Prot:O07553"
                     /translation="MDSQKKLTFPLAVGLFIFMLCIIISCLFLLHVEPHIPLFLSVVM
                     LSAAALWFGFPWKSIEKGIVDGIKNGVQPIIVLALIGILIGAWMYSGAIPTMTVYALS
                     FIEPSHLLLTALFSCMIISTLVGSSLTTVSTIGVALIGVASAAGVPLEWTAGAVICGA
                     CFGDKMSPMSDTTNFAAGIGEIPIFEHIRHMMGTTIPALLITVVLFYFLGSSVSADAA
                     STDNIQQVITGIKDAANVTPWALLSPLLVVLLAMKRVSVIPVLTAGIISSGILTAIFV
                     PYSSLQAFMTALQNGTTFETDNEAAAKIINRGGLQSMMGSVSLIMIAFALGGLMEKIG
                     LISALLEGVMKGIRSKGRLVAATVCSSIGVNLATGEQYLSILIPGQSFKSLYDKRNIQ
                     RKFLTRSLEDGGTLINPLIPWGVSGAFMASALGVPVIDYIPFTFFLYISPMISILIGF
                     VKK*"
                     /label="nhaC CDS"
     gene            complement(967110..968471)
                     /gene="nhaC"
                     /locus_tag="BSU_09680"
                     /old_locus_tag="BSU09680"
                     /label="nhaC gene"
     downshifts      complement(967134)
                     /Source="Nicolas_upshifts"
                     /id="D512"
                     /incds=0
                     /nref=7
                     /ntot=77
                     /MaxReadThrough="0.50034"
                     /MaxDrop="3.60175"
                     /score="1.04025421"
                     /energy="-11.5"
                     /TU="NA"
                     /idTUdmin="U769"
                     /TUdmin=22
                     /isTUend="TRUE"
                     /label="downshifts"
     S_feature       complement(968472..968542)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1044247_1044317_c"
                     /HighExp="B60, G135, Etha, LBGexp, G150, Diami, Paraq,
                     G180, H2O2, Gly"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA, SigB"
                     /TUshortPSig="0.96, 1"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S339"
     misc_feature    complement(968515..968534)
                     /Source="Nicolas_upshift_promotors"
                     /id="U769"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.926073926073926"
                     /psig="0.96003996003996"
                     /xcortree=2470
                     /SigmaFactorBS="agtgagcacgccctgtgctcacttcttttatattcataattg
                     tgaaaaaacatagattttcgttttttTCTGTTATAATGCTTTCGTGcccaaaagcaca
                     a"
                     /listShort="S339, nhaC"
                     /GFF_Attribute="listLong"
                     /label="promotor_single_box"
                     /note="Geneious type: promotor_single_box"
     upshifts        complement(968542)
                     /Source="Nicolas_upshifts"
                     /id="U769"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.926073926073926"
                     /psig="0.96003996003996"
                     /xcortree=2470
                     /SigmaFactorBS="agtgagcacgccctgtgctcacttcttttatattcataattg
                     tgaaaaaacatagattttcgttttttTCTGTTATAATGCTTTCGTGcccaaaagcaca
                     a"
                     /listShort="S339, nhaC"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             complement(968598..969098)
                     /gene="nhaX"
                     /locus_tag="BSU_09690"
                     /old_locus_tag="BSU09690"
                     /function="16.12: Sense"
                     /function="16.8: Protect"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 1c: Function from experimental evidences
                     in the studied genus; PubMedId: 11988534, 16159758,
                     27464829; Product type f: factor"
                     /codon_start=1
                     /transl_table=11
                     /product="stress response protein, UspA family"
                     /protein_id="NP_388850.2"
                     /db_xref="EnsemblGenomes-Gn:BSU09690"
                     /db_xref="EnsemblGenomes-Tr:CAB12808"
                     /db_xref="GOA:O07552"
                     /db_xref="InterPro:IPR006015"
                     /db_xref="InterPro:IPR006016"
                     /db_xref="InterPro:IPR014729"
                     /db_xref="SubtiList:BG13043"
                     /db_xref="UniProtKB/Swiss-Prot:O07552"
                     /translation="MFHADRIIVAFDGSENSKKALLTAIDLAKTVNAAITVAHSHDMK
                     DNQTVIDPPRPAAEASYISGGMTSVPDPLISDVTSPEPMIYEDRTEEVIAEARMMLNE
                     QQADGDIDILEGDPAESIIEHANRISADMIVTGSRDQNRLKKLIFGSVSEKLSAKSDI
                     PVLIVK*"
                     /label="nhaX CDS"
     gene            complement(968598..969098)
                     /gene="nhaX"
                     /locus_tag="BSU_09690"
                     /old_locus_tag="BSU09690"
                     /label="nhaX gene"
     downshifts      complement(968630)
                     /Source="Nicolas_upshifts"
                     /id="D513"
                     /incds=0
                     /nref=10
                     /ntot=63
                     /MaxReadThrough="4.74071"
                     /MaxDrop="5.69273"
                     /score="4.44189378"
                     /energy="-12.2"
                     /TU="U770"
                     /idTUdmin="U770"
                     /TUdmin="-1320"
                     /isTUend="FALSE"
                     /label="downshifts"
     promotor_-10    complement(969120..969138)
                     /Source="Nicolas_upshift_promotors"
                     /id="U770"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp=1
                     /psig=1
                     /xcortree=208
                     /SigmaFactorBS="aaacaaaaccttttattgtcaatcattacttgaataggaaaA
                     GGTTAAttgtgctcaaattcGGGTAGTAGTGTTGTAAGAcgctttgaaagggtgagaa
                     g"
                     /listShort="nhaX, S339, nhaC"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(969140)
                     /Source="Nicolas_upshifts"
                     /id="U770"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp=1
                     /psig=1
                     /xcortree=208
                     /SigmaFactorBS="aaacaaaaccttttattgtcaatcattacttgaataggaaaA
                     GGTTAAttgtgctcaaattcGGGTAGTAGTGTTGTAAGAcgctttgaaagggtgagaa
                     g"
                     /listShort="nhaX, S339, nhaC"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(969153..969159)
                     /Source="Nicolas_upshift_promotors"
                     /id="U770"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp=1
                     /psig=1
                     /xcortree=208
                     /SigmaFactorBS="aaacaaaaccttttattgtcaatcattacttgaataggaaaA
                     GGTTAAttgtgctcaaattcGGGTAGTAGTGTTGTAAGAcgctttgaaagggtgagaa
                     g"
                     /listShort="nhaX, S339, nhaC"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-35    969177..969184
                     /Source="Nicolas_upshift_promotors"
                     /id="U771"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.918081918081918"
                     /psig=1
                     /xcortree=416
                     /SigmaFactorBS="ctacccgaatttgagcacaattaaccttttcctattcaagta
                     atGATTGACAataaaaggttttgtTTATATGATGATAAAAAGATgaaatcagaatgga
                     a"
                     /listShort="S340, yheJ, S341, yheI, yheH"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     S_feature       969192..969261
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1044967_1045036"
                     /HighExp="C90, M9-stat, BC, T1.30H, T3.30H, Sw, T5.0H, GM
                     15, T3.0H, T2.30H"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig=1
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S340"
     upshifts        969193
                     /Source="Nicolas_upshifts"
                     /id="U771"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.918081918081918"
                     /psig=1
                     /xcortree=416
                     /SigmaFactorBS="ctacccgaatttgagcacaattaaccttttcctattcaagta
                     atGATTGACAataaaaggttttgtTTATATGATGATAAAAAGATgaaatcagaatgga
                     a"
                     /listShort="S340, yheJ, S341, yheI, yheH"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-10    969199..969218
                     /Source="Nicolas_upshift_promotors"
                     /id="U771"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.918081918081918"
                     /psig=1
                     /xcortree=416
                     /SigmaFactorBS="ctacccgaatttgagcacaattaaccttttcctattcaagta
                     atGATTGACAataaaaggttttgtTTATATGATGATAAAAAGATgaaatcagaatgga
                     a"
                     /listShort="S340, yheJ, S341, yheI, yheH"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     CDS             969262..969423
                     /gene="bmrB"
                     /locus_tag="BSU_09700"
                     /old_locus_tag="BSU09700"
                     /experiment="publication(s) with functional evidences,
                     PMID:25217586"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 25217586; Product type r:
                     regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="regulator leader peptide"
                     /protein_id="NP_388851.1"
                     /db_xref="EnsemblGenomes-Gn:BSU09700"
                     /db_xref="EnsemblGenomes-Tr:CAB12809"
                     /db_xref="SubtiList:BG13042"
                     /db_xref="UniProtKB/Swiss-Prot:O07551"
                     /translation="MFIKQFHIGAANLLFCFRERFFRSDRALKSAVRNISVKKGMELT
                     LHAFFIYKI*"
                     /label="bmrB CDS"
     gene            969262..969423
                     /gene="bmrB"
                     /locus_tag="BSU_09700"
                     /old_locus_tag="BSU09700"
                     /label="bmrB gene"
     downshifts      969353
                     /Source="Nicolas_upshifts"
                     /id="D514"
                     /incds=1
                     /nref=29
                     /ntot=180
                     /MaxReadThrough="5.31538"
                     /MaxDrop="4.59672"
                     /score="25.6910195"
                     /energy="-14.4"
                     /TU="U771"
                     /idTUdmin="U768"
                     /TUdmin=2273
                     /isTUend="FALSE"
                     /label="downshifts"
     S_feature       969424..969542
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1045199_1045317"
                     /HighExp="LPhT, S7, S6, T-1.10H, Sw, LBGstat, S5, T-0.40H,
                     S8, T-1.40H"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig=1
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S341"
     CDS             969543..971300
                     /gene="bmrC"
                     /locus_tag="BSU_09710"
                     /old_locus_tag="BSU09710"
                     /function="16.1: Circulate"
                     /function="16.3: Control"
                     /experiment="publication(s) with functional evidences,
                     PMID:15855514, 16487324, 19167342, 21602923, 25217586"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 15855514, 16487324,
                     19167342, 21602923, 25217586; Product type t :
                     transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="efflux ABC transporter (ATP-binding protein)"
                     /protein_id="NP_388852.1"
                     /db_xref="EnsemblGenomes-Gn:BSU09710"
                     /db_xref="EnsemblGenomes-Tr:CAB12810"
                     /db_xref="GOA:O07550"
                     /db_xref="InterPro:IPR003439"
                     /db_xref="InterPro:IPR003593"
                     /db_xref="InterPro:IPR011527"
                     /db_xref="InterPro:IPR017871"
                     /db_xref="InterPro:IPR027417"
                     /db_xref="InterPro:IPR036640"
                     /db_xref="SubtiList:BG13041"
                     /db_xref="UniProtKB/Swiss-Prot:O07550"
                     /translation="MFSVLKKLGWFFKAYWLRYTIAIVLLLAVNVIEMFPPKLLGNAI
                     DDMKAGAFTAEGLLFYIGIFFVLTAAVYIMSYFWMHQLFGGANLMEKILRTKLMGHLL
                     TMSPPFYEKNRTGDLMARGTNDLQAVSLTTGFGILTLVDSTMFMMTIFLTMGFLISWK
                     LTFAAIIPLPVMAIAISLYGSKIHERFTEAQNAFGALNDRVLESVSGVRVIRAYVQET
                     NDVRRFNEMTADVYQKNMKVAFIDSLFEPTVKLLVGASYLIGLGYGAFLVFRNELTLG
                     ELVSFNVYLGMMIWPMFAIGELINVMQRGNASLDRVNETLSYETDVTDPKQPADLKEP
                     GDIVFSHVSFTYPSSTSDNLQDISFTVRKGQTVGIAGKTGSGKTTIIKQLLRQYPPGE
                     GSITFSGVPIQQIPLDRLRGWIGYVPQDHLLFSRTVKENILYGKQDATDKEVQQAIAE
                     AHFEKDLHMLPSGLETMVGEKGVALSGGQKQRISIARALMANPEILILDDSLSAVDAK
                     TEAAIIKNIRENRKGKTTFILTHRLSAVEHADLILVMDGGVIAERGTHQELLANNGWY
                     REQYERQQLFTAEEGGAGA*"
                     /label="bmrC CDS"
     gene            969543..971300
                     /gene="bmrC"
                     /locus_tag="BSU_09710"
                     /old_locus_tag="BSU09710"
                     /label="bmrC gene"
     CDS             971297..973318
                     /gene="bmrD"
                     /locus_tag="BSU_09720"
                     /old_locus_tag="BSU09720"
                     /function="16.1: Circulate"
                     /function="16.3: Control"
                     /experiment="publication(s) with functional evidences,
                     PMID:15855514, 16487324, 19167342, 21602923, 25217586"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 15855514, 16487324,
                     19167342, 21602923, 25217586; Product type t :
                     transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="efflux ABC transporter (ATP-binding subunit)"
                     /protein_id="NP_388853.1"
                     /db_xref="EnsemblGenomes-Gn:BSU09720"
                     /db_xref="EnsemblGenomes-Tr:CAB12811"
                     /db_xref="GOA:O07549"
                     /db_xref="InterPro:IPR003439"
                     /db_xref="InterPro:IPR003593"
                     /db_xref="InterPro:IPR011527"
                     /db_xref="InterPro:IPR017871"
                     /db_xref="InterPro:IPR027417"
                     /db_xref="InterPro:IPR036640"
                     /db_xref="SubtiList:BG13040"
                     /db_xref="UniProtKB/Swiss-Prot:O07549"
                     /translation="MKIGKTLWRYALLYRKLLITAVLLLTVAVGAELTGPFIGKKMID
                     DHILGIEKTWYEAAEKDKNAVQFHGVSYVREDRLQEPVSKAKEAHIYQVGMAFYFVDQ
                     AVSFDGNRTVSDGKLTITNGDKSRAYAAEKLTKQELFQFYQPEIKGMVLLICLYGGLL
                     VFSVFFQYGQHYLLQMSANRIIQKMRQDVFSHIQKMPIRYFDNLPAGKVVARITNDTE
                     AIRDLYVTVLSTFVTSGIYMFGIFTALFLLDVKLAFVCLAIVPIIWLWSVIYRRYASY
                     YNQKIRSINSDINAKMNESIQGMTIIQAFRHQKETMREFEELNESHFYFQNRMLNLNS
                     LMSHNLVNVIRNLAFVCLIWHFGGASLNAAGIVSIGVLYAFVDYLNRLFQPITGIVNQ
                     FSKLELARVSAGRVFELLEEKNTEEAGEPAKERALGRVEFRDVSFAYQEGEEVLKHIS
                     FTAQKGETVALVGHTGSGKSSILNLLFRFYDAQKGDVLIDGKSIYNMSRQELRSHMGI
                     VLQDPYLFSGTIGSNVSLDDERMTEEEIKNALRQVGAEPLLKKLPKGINEPVIEKGST
                     LSSGERQLISFARALAFDPAILILDEATAHIDTETEAVIQKALDVVKQGRTTFVIAHR
                     LSTIRNADQILVLDKGEIVERGNHEELMALEGQYYQMYELQKGQKHSIA*"
                     /label="bmrD CDS"
     gene            971297..973318
                     /gene="bmrD"
                     /locus_tag="BSU_09720"
                     /old_locus_tag="BSU09720"
                     /label="bmrD gene"
     downshifts      973306
                     /Source="Nicolas_upshifts"
                     /id="D515"
                     /incds=0
                     /nref=69
                     /ntot=230
                     /MaxReadThrough="0.741399999999999"
                     /MaxDrop="5.11492"
                     /score="9.67206405"
                     /energy="-10.9"
                     /TU="NA"
                     /idTUdmin="U771"
                     /TUdmin=0
                     /isTUend="TRUE"
                     /label="downshifts"
     CDS             complement(973367..973987)
                     /gene="yheG"
                     /locus_tag="BSU_09730"
                     /old_locus_tag="BSU09730"
                     /EC_number="1.-.-.-"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative NADH-flavin oxidoreductase"
                     /protein_id="NP_388854.1"
                     /db_xref="EnsemblGenomes-Gn:BSU09730"
                     /db_xref="EnsemblGenomes-Tr:CAB12812"
                     /db_xref="InterPro:IPR016040"
                     /db_xref="InterPro:IPR036291"
                     /db_xref="SubtiList:BG13039"
                     /db_xref="UniProtKB/Swiss-Prot:O07548"
                     /translation="MKIALLGASGRVGQAFLTQAAADERFDIFALIRSQHADLPLSKD
                     RTVMGNARRLEDVKKIMENAEIVISCLGTDGDDTLSTAMAHILSVMEEQHIKRLITIG
                     TAGILDSRYEPGKYRFETNESKRKQTRAAKEHAKVYEMLKESSLDWTIICPTYLPDGT
                     ATGVYRTERNVLPEGGTSISVGDTADFLYRELVTGEYVGNRVGLAY*"
                     /label="yheG CDS"
     gene            complement(973367..973987)
                     /gene="yheG"
                     /locus_tag="BSU_09730"
                     /old_locus_tag="BSU09730"
                     /label="yheG gene"
     downshifts      complement(973382)
                     /Source="Nicolas_upshifts"
                     /id="D516"
                     /incds=0
                     /nref=19
                     /ntot=169
                     /MaxReadThrough="1.82652"
                     /MaxDrop="3.00293"
                     /score="-0.293143554"
                     /energy="-10.9"
                     /TU="NA"
                     /idTUdmin="U772"
                     /TUdmin=0
                     /isTUend="TRUE"
                     /label="downshifts"
     promotor_no_box 973972..974072
                     /Source="Nicolas_upshift_promotors"
                     /id="U773"
                     /multdbtbs="-"
                     /comp="M15"
                     /sig="Sig-"
                     /pcomp="0.45954045954046"
                     /psig="0.043956043956044"
                     /xcortree=770
                     /SigmaFactorBS="ataaagcgattttcattaaaaaacctcctcgcctttcattat
                     aaaaggatgttctcagtttgaacagcgcgggaaagaatacctgtacaaataaacagaa
                     c"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_no_box"
     promotor_-10    complement(974001..974020)
                     /Source="Nicolas_upshift_promotors"
                     /id="U772"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.844155844155844"
                     /psig="0.955044955044955"
                     /xcortree=2213
                     /SigmaFactorBS="catcgttctgtttatttgtacaggtattctttcccgcgCTGT
                     tcaaactgagaacaTCCTTTTATAATGAAAGGCGaggaggttttttaatgaaaatcgc
                     t"
                     /listShort="yheG"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(974016)
                     /Source="Nicolas_upshifts"
                     /id="U772"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.844155844155844"
                     /psig="0.955044955044955"
                     /xcortree=2213
                     /SigmaFactorBS="catcgttctgtttatttgtacaggtattctttcccgcgCTGT
                     tcaaactgagaacaTCCTTTTATAATGAAAGGCGaggaggttttttaatgaaaatcgc
                     t"
                     /listShort="yheG"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             complement(974026..974151)
                     /gene="yheF"
                     /locus_tag="BSU_09740"
                     /old_locus_tag="BSU09740"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved hypothetical protein"
                     /protein_id="NP_388855.1"
                     /db_xref="EnsemblGenomes-Gn:BSU09740"
                     /db_xref="EnsemblGenomes-Tr:CAB12813"
                     /db_xref="SubtiList:BG13038"
                     /db_xref="UniProtKB/Swiss-Prot:O07547"
                     /translation="MSFITIVNWELVQFVSVSMIHEYVSHRSVYLYRYSFPRCSN*"
                     /label="yheF CDS"
     gene            complement(974026..974151)
                     /gene="yheF"
                     /locus_tag="BSU_09740"
                     /old_locus_tag="BSU09740"
                     /label="yheF gene"
     upshifts        974032
                     /Source="Nicolas_upshifts"
                     /id="U773"
                     /multdbtbs="-"
                     /comp="M15"
                     /sig="Sig-"
                     /pcomp="0.45954045954046"
                     /psig="0.043956043956044"
                     /xcortree=770
                     /SigmaFactorBS="ataaagcgattttcattaaaaaacctcctcgcctttcattat
                     aaaaggatgttctcagtttgaacagcgcgggaaagaatacctgtacaaataaacagaa
                     c"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(974035..974038)
                     /Source="Nicolas_upshift_promotors"
                     /id="U772"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.844155844155844"
                     /psig="0.955044955044955"
                     /xcortree=2213
                     /SigmaFactorBS="catcgttctgtttatttgtacaggtattctttcccgcgCTGT
                     tcaaactgagaacaTCCTTTTATAATGAAAGGCGaggaggttttttaatgaaaatcgc
                     t"
                     /listShort="yheG"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    complement(974165..974184)
                     /Source="Nicolas_upshift_promotors"
                     /id="U774"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp=1
                     /psig=1
                     /xcortree=1332
                     /SigmaFactorBS="agggcgcggtttccgcgctctctttatTTTGTCACCCttttt
                     tcctgctcCACATATCCTAGAAAAAAAGggagggaatcggggtgtcattcatcaccat
                     t"
                     /listShort="yheF"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(974174)
                     /Source="Nicolas_upshifts"
                     /id="U774"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp=1
                     /psig=1
                     /xcortree=1332
                     /SigmaFactorBS="agggcgcggtttccgcgctctctttatTTTGTCACCCttttt
                     tcctgctcCACATATCCTAGAAAAAAAGggagggaatcggggtgtcattcatcaccat
                     t"
                     /listShort="yheF"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(974198..974207)
                     /Source="Nicolas_upshift_promotors"
                     /id="U774"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp=1
                     /psig=1
                     /xcortree=1332
                     /SigmaFactorBS="agggcgcggtttccgcgctctctttatTTTGTCACCCttttt
                     tcctgctcCACATATCCTAGAAAAAAAGggagggaatcggggtgtcattcatcaccat
                     t"
                     /listShort="yheF"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     downshifts      974230
                     /Source="Nicolas_upshifts"
                     /id="D517"
                     /incds=0
                     /nref=6
                     /ntot=22
                     /MaxReadThrough="0.352760000000001"
                     /MaxDrop="4.67633"
                     /score="9.67206405"
                     /energy="-10.9"
                     /TU="NA"
                     /idTUdmin="U773"
                     /TUdmin=88
                     /isTUend="FALSE"
                     /label="downshifts"
     CDS             complement(974256..974459)
                     /gene="sspB"
                     /locus_tag="BSU_09750"
                     /old_locus_tag="BSU09750"
                     /function="16.8: Protect"
                     /experiment="publication(s) with functional evidences,
                     PMID:3009398, 9572981, 16707666, 19659696, 26790838"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 3009398, 9572981,
                     16707666, 19659696, 26790838; Product type cp: cell
                     process"
                     /codon_start=1
                     /transl_table=11
                     /product="small acid-soluble spore protein (beta-type
                     SASP)"
                     /protein_id="NP_388856.1"
                     /db_xref="EnsemblGenomes-Gn:BSU09750"
                     /db_xref="EnsemblGenomes-Tr:CAB12814"
                     /db_xref="GOA:P04832"
                     /db_xref="InterPro:IPR001448"
                     /db_xref="InterPro:IPR018126"
                     /db_xref="SubtiList:BG10787"
                     /db_xref="UniProtKB/Swiss-Prot:P04832"
                     /translation="MANQNSSNDLLVPGAAQAIDQMKLEIASEFGVNLGADTTSRANG
                     SVGGEITKRLVSFAQQQMGGRVQ*"
                     /label="sspB CDS"
     gene            complement(974256..974459)
                     /gene="sspB"
                     /locus_tag="BSU_09750"
                     /old_locus_tag="BSU09750"
                     /label="sspB gene"
     downshifts      complement(974261)
                     /Source="Nicolas_upshifts"
                     /id="D518"
                     /incds=0
                     /nref=72
                     /ntot=93
                     /MaxReadThrough="1.27819"
                     /MaxDrop="8.55895"
                     /score="22.2113888"
                     /energy="-16"
                     /TU="NA"
                     /idTUdmin="U776"
                     /TUdmin=1
                     /isTUend="TRUE"
                     /label="downshifts"
     S_feature       complement(974460..974570)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1050235_1050345_c"
                     /HighExp="S8, S5, S7, S6, S4, G/S, Pyr, ferm, BT, nit"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigGF"
                     /TUshortPSig="0.996"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S342"
     promotor_no_box 974500..974600
                     /Source="Nicolas_upshift_promotors"
                     /id="U775"
                     /multdbtbs="-"
                     /comp="M15"
                     /sig="Sig-"
                     /pcomp="0.665334665334665"
                     /psig="0.090909090909091"
                     /xcortree=696
                     /SigmaFactorBS="ggagttgcaccaatctgtgaacccttctcgggtgtcactgcc
                     gcctcggcgtaacccaatgctttgccggcttgttactacgtattatgttaaaatggcc
                     g"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_no_box"
     upshifts        974560
                     /Source="Nicolas_upshifts"
                     /id="U775"
                     /multdbtbs="-"
                     /comp="M15"
                     /sig="Sig-"
                     /pcomp="0.665334665334665"
                     /psig="0.090909090909091"
                     /xcortree=696
                     /SigmaFactorBS="ggagttgcaccaatctgtgaacccttctcgggtgtcactgcc
                     gcctcggcgtaacccaatgctttgccggcttgttactacgtattatgttaaaatggcc
                     g"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     upshifts        complement(974576)
                     /Source="Nicolas_upshifts"
                     /id="U776"
                     /multdbtbs="SigG"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp="0.996003996003996"
                     /psig="0.996003996003996"
                     /xcortree=836
                     /SigmaFactorBS="ctcaagatttaccacacaattctcCGCATGAttttccggcca
                     tttTAACATAATACGtagtaacaagccggcaaagcattgggttacgccgaggcggcag
                     t"
                     /listShort="S342, sspB"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-10    complement(974580..974591)
                     /Source="Nicolas_upshift_promotors"
                     /id="U776"
                     /multdbtbs="SigG"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp="0.996003996003996"
                     /psig="0.996003996003996"
                     /xcortree=836
                     /SigmaFactorBS="ctcaagatttaccacacaattctcCGCATGAttttccggcca
                     tttTAACATAATACGtagtaacaagccggcaaagcattgggttacgccgaggcggcag
                     t"
                     /listShort="S342, sspB"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     promotor_-35    complement(974606..974612)
                     /Source="Nicolas_upshift_promotors"
                     /id="U776"
                     /multdbtbs="SigG"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp="0.996003996003996"
                     /psig="0.996003996003996"
                     /xcortree=836
                     /SigmaFactorBS="ctcaagatttaccacacaattctcCGCATGAttttccggcca
                     tttTAACATAATACGtagtaacaagccggcaaagcattgggttacgccgaggcggcag
                     t"
                     /listShort="S342, sspB"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             complement(974668..974886)
                     /gene="yheE"
                     /locus_tag="BSU_09760"
                     /old_locus_tag="BSU09760"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved hypothetical protein (sporulation /
                     germination island)"
                     /protein_id="NP_388857.1"
                     /db_xref="EnsemblGenomes-Gn:BSU09760"
                     /db_xref="EnsemblGenomes-Tr:CAB12815"
                     /db_xref="InterPro:IPR017263"
                     /db_xref="SubtiList:BG13037"
                     /db_xref="UniProtKB/Swiss-Prot:O07546"
                     /translation="MAVMISHFSWKPLFPKEKLPGWKISFYYKGTHYEGIYHKSGEIE
                     WGDLFPARADEPALTNEIHELMLFHIYD*"
                     /label="yheE CDS"
     gene            complement(974668..974886)
                     /gene="yheE"
                     /locus_tag="BSU_09760"
                     /old_locus_tag="BSU09760"
                     /label="yheE gene"
     downshifts      complement(974702)
                     /Source="Nicolas_upshifts"
                     /id="D519"
                     /incds=0
                     /nref=5
                     /ntot=83
                     /MaxReadThrough="0.43384"
                     /MaxDrop="3.42951"
                     /score="37.4339943"
                     /energy="-11.8"
                     /TU="NA"
                     /idTUdmin="U777"
                     /TUdmin=110
                     /isTUend="FALSE"
                     /label="downshifts"
     promotor_-10    complement(974927..974946)
                     /Source="Nicolas_upshift_promotors"
                     /id="U777"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.609390609390609"
                     /psig="0.996003996003996"
                     /xcortree=419
                     /SigmaFactorBS="ctttatccaaagctgggacaaactgcatatttaggccTCTTC
                     AATgatgttctgaaacAATGATACAATGAACATAAGccgtttttatttaggtcaattg
                     a"
                     /listShort="yheE"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(974944)
                     /Source="Nicolas_upshifts"
                     /id="U777"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.609390609390609"
                     /psig="0.996003996003996"
                     /xcortree=419
                     /SigmaFactorBS="ctttatccaaagctgggacaaactgcatatttaggccTCTTC
                     AATgatgttctgaaacAATGATACAATGAACATAAGccgtttttatttaggtcaattg
                     a"
                     /listShort="yheE"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(974960..974967)
                     /Source="Nicolas_upshift_promotors"
                     /id="U777"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.609390609390609"
                     /psig="0.996003996003996"
                     /xcortree=419
                     /SigmaFactorBS="ctttatccaaagctgggacaaactgcatatttaggccTCTTC
                     AATgatgttctgaaacAATGATACAATGAACATAAGccgtttttatttaggtcaattg
                     a"
                     /listShort="yheE"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             complement(975036..976397)
                     /gene="spaD"
                     /locus_tag="BSU_09770"
                     /old_locus_tag="BSU09770"
                     /function="16.5: Explore"
                     /function="16.8: Protect"
                     /function="16.1: Circulate"
                     /experiment="publication(s) with functional evidences,
                     PMID:15231775, 25035995"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 15231775, 25035995;
                     Product type cp: cell process"
                     /codon_start=1
                     /transl_table=11
                     /product="spore coat associated protein"
                     /protein_id="NP_388858.2"
                     /db_xref="EnsemblGenomes-Gn:BSU09770"
                     /db_xref="EnsemblGenomes-Tr:CAB12816"
                     /db_xref="GOA:O07545"
                     /db_xref="InterPro:IPR013815"
                     /db_xref="InterPro:IPR026838"
                     /db_xref="SubtiList:BG13036"
                     /db_xref="UniProtKB/Swiss-Prot:O07545"
                     /translation="MNPKRFLIGIDKTSENTLFLPSSLKQDGLLHAAFGTKVVRCHVA
                     YRRHLEQTVLLSENLFHELLLPHRSRADILIHDHTVHIGPLVGIFTAGFTVSLERPFK
                     DRSLFFSKLVTLHEQAGGYCFVFGAHQINWEEGTIEGLLYRENGWEKKIVPLPNVVYD
                     RLPNRKIEDSLLLQHTKKRLIDEYQIPWFNKTFFNKWNVHQLLEKDPRTAPFLPRSEL
                     TPSVELIDELCGAYKKVYIKPANGALGTGIYQLTRTDGGLTVKHTNDAKTFTSIDYSD
                     AASFLAEFQKHHNPSDFLIQQGVDLIEFQGKPADFRVHTNKNRKGKWTVTAIAVKISG
                     KNSITTHLSNGGTVKTLAEVYDDPAERVEVIKKLSAAALTASHVLHDHIEGFIGEIGF
                     DFGIDQNGKVWMFEANSRPGRSIFSHPNLHHVDSLTKRRSFEYASYLSEKAITSPEAL
                     WPS*"
                     /label="spaD CDS"
     gene            complement(975036..976397)
                     /gene="spaD"
                     /locus_tag="BSU_09770"
                     /old_locus_tag="BSU09770"
                     /label="spaD gene"
     downshifts      complement(975054)
                     /Source="Nicolas_upshifts"
                     /id="D520"
                     /incds=0
                     /nref=3
                     /ntot=26
                     /MaxReadThrough="2.33323"
                     /MaxDrop="3.7968"
                     /score="37.4339943"
                     /energy="-11.8"
                     /TU="NA"
                     /idTUdmin="U779"
                     /TUdmin=0
                     /isTUend="TRUE"
                     /label="downshifts"
     downshifts      complement(975098)
                     /Source="Nicolas_upshifts"
                     /id="D521"
                     /incds=1
                     /nref=2
                     /ntot=45
                     /MaxReadThrough="5.29177"
                     /MaxDrop="3.36501"
                     /score="37.4339943"
                     /energy="-11.8"
                     /TU="U779"
                     /idTUdmin="U779"
                     /TUdmin="-44"
                     /isTUend="FALSE"
                     /label="downshifts"
     CDS             complement(976387..977478)
                     /gene="spaC"
                     /locus_tag="BSU_09780"
                     /old_locus_tag="BSU09780"
                     /function="16.8: Protect"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 2b: Function from indirect experimental
                     evidences (e.g. phenotypes); PubMedId: 15231775, 25035995;
                     Product type f: factor"
                     /codon_start=1
                     /transl_table=11
                     /product="spore coat associated protein, subunit C"
                     /protein_id="NP_388859.1"
                     /db_xref="EnsemblGenomes-Gn:BSU09780"
                     /db_xref="EnsemblGenomes-Tr:CAB12817"
                     /db_xref="GOA:O07544"
                     /db_xref="InterPro:IPR013815"
                     /db_xref="InterPro:IPR026838"
                     /db_xref="SubtiList:BG13035"
                     /db_xref="UniProtKB/Swiss-Prot:O07544"
                     /translation="MITLGFMSLSRQHEADYSAELAKRAPEFGIRFIRFTPFDISPDT
                     LRVKASVYHSASSTWNETEMAIPDYIYDRCFYGKDSHSQKAKPIVEWLKKYPKTEFIG
                     RGLPDKWTVLHDLQQHSVINPYIPETIKVSRYEQIHSFLSKEKACILKPAFGAGGRGV
                     ILLKLGKKNITATYHIGKDKQTKTFSNQTSFKTWCKKVLQHQYLLQPYLNIQDKEQYP
                     CDIRLFMEKNEAGEWNTVGKAVRRGYKHGLLANLSGGSDALTFDSWFEDIPKKQQVVL
                     LDDVFSITQSVPYYLDERYGPLFELGLDICLAKDGRIWILDINSKPGRKSILRVSPEQ
                     KEQLYTCPLKRCQYLFSEQSQKGVLPRES*"
                     /label="spaC CDS"
     gene            complement(976387..977478)
                     /gene="spaC"
                     /locus_tag="BSU_09780"
                     /old_locus_tag="BSU09780"
                     /label="spaC gene"
     promotor_-10    complement(976802..976816)
                     /Source="Nicolas_upshift_promotors"
                     /id="U778"
                     /multdbtbs="-"
                     /comp="M9"
                     /sig="SigWXY"
                     /pcomp="0.63936063936064"
                     /psig="0.63936063936064"
                     /xcortree=613
                     /SigmaFactorBS="aatatttgcttcagccttacttaaacattcaagataAGGAAC
                     AATacccttgtgatatTCGTCTGTTTATGGAaaaaaacgaagcaggtgaatggaatac
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(976814)
                     /Source="Nicolas_upshifts"
                     /id="U778"
                     /multdbtbs="-"
                     /comp="M9"
                     /sig="SigWXY"
                     /pcomp="0.63936063936064"
                     /psig="0.63936063936064"
                     /xcortree=613
                     /SigmaFactorBS="aatatttgcttcagccttacttaaacattcaagataAGGAAC
                     AATacccttgtgatatTCGTCTGTTTATGGAaaaaaacgaagcaggtgaatggaatac
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(976830..976838)
                     /Source="Nicolas_upshift_promotors"
                     /id="U778"
                     /multdbtbs="-"
                     /comp="M9"
                     /sig="SigWXY"
                     /pcomp="0.63936063936064"
                     /psig="0.63936063936064"
                     /xcortree=613
                     /SigmaFactorBS="aatatttgcttcagccttacttaaacattcaagataAGGAAC
                     AATacccttgtgatatTCGTCTGTTTATGGAaaaaaacgaagcaggtgaatggaatac
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     S_feature       complement(977479..977584)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1053254_1053359_c"
                     /HighExp="S4, B36, S5, S6, S7, S8, B60, S3, T5.0H, BT"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigEF"
                     /TUshortPSig=1
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S343"
     promotor_-10    complement(977568..977586)
                     /Source="Nicolas_upshift_promotors"
                     /id="U779"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp=1
                     /psig=1
                     /xcortree=1099
                     /SigmaFactorBS="ggagacaaattcctgttcttagaaaatcagcttgttcttttG
                     GAATAgggcaaggtggagaaTCGTATTCTGTAAAGTAGAataccgtcagctgcgttcg
                     t"
                     /listShort="S343, yheC, yheD"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(977588)
                     /Source="Nicolas_upshifts"
                     /id="U779"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp=1
                     /psig=1
                     /xcortree=1099
                     /SigmaFactorBS="ggagacaaattcctgttcttagaaaatcagcttgttcttttG
                     GAATAgggcaaggtggagaaTCGTATTCTGTAAAGTAGAataccgtcagctgcgttcg
                     t"
                     /listShort="S343, yheC, yheD"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(977602..977607)
                     /Source="Nicolas_upshift_promotors"
                     /id="U779"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp=1
                     /psig=1
                     /xcortree=1099
                     /SigmaFactorBS="ggagacaaattcctgttcttagaaaatcagcttgttcttttG
                     GAATAgggcaaggtggagaaTCGTATTCTGTAAAGTAGAataccgtcagctgcgttcg
                     t"
                     /listShort="S343, yheC, yheD"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-35    977650..977657
                     /Source="Nicolas_upshift_promotors"
                     /id="U780"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.983016983016983"
                     /psig=1
                     /xcortree=2000
                     /SigmaFactorBS="ttttctaagaacaggaatttgtctcctCGTTTGCTaagtgat
                     tgcatgaGCCTCTATAATACGTATAGGtacataatctatatgaaaaaagctgaagcac
                     a"
                     /listShort="yheB, S344, yheA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    977672..977691
                     /Source="Nicolas_upshift_promotors"
                     /id="U780"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.983016983016983"
                     /psig=1
                     /xcortree=2000
                     /SigmaFactorBS="ttttctaagaacaggaatttgtctcctCGTTTGCTaagtgat
                     tgcatgaGCCTCTATAATACGTATAGGtacataatctatatgaaaaaagctgaagcac
                     a"
                     /listShort="yheB, S344, yheA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        977683
                     /Source="Nicolas_upshifts"
                     /id="U780"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.983016983016983"
                     /psig=1
                     /xcortree=2000
                     /SigmaFactorBS="ttttctaagaacaggaatttgtctcctCGTTTGCTaagtgat
                     tgcatgaGCCTCTATAATACGTATAGGtacataatctatatgaaaaaagctgaagcac
                     a"
                     /listShort="yheB, S344, yheA"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             977745..978878
                     /gene="yheB"
                     /locus_tag="BSU_09790"
                     /old_locus_tag="BSU09790"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms; PubMedId: 16684363"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved hypothetical protein"
                     /protein_id="NP_388860.1"
                     /db_xref="EnsemblGenomes-Gn:BSU09790"
                     /db_xref="EnsemblGenomes-Tr:CAB12818"
                     /db_xref="GOA:O07543"
                     /db_xref="InterPro:IPR007383"
                     /db_xref="InterPro:IPR016991"
                     /db_xref="SubtiList:BG13034"
                     /db_xref="UniProtKB/Swiss-Prot:O07543"
                     /translation="MGIAGTFIFMIVIGAAIGAVTNHLAIQMLFRPYKAYYLFGKRVP
                     FTPGLIPRRRDELAKQMGLMVVNHLLTPEGIKKRLVSDAAKTQALRVGEQLIQKLSLS
                     EVTVKEALEKAGMKRPEKAADAWISSWTDDKLHELFRQYGDQSLKELVPIEVQEKLEE
                     KIPMISGYILSRSVRYFESDEGKIRLGNMIDDFLKERGMLGSMVQLFLGNSSLADRVL
                     PELLKFLRNEETNKLLSDLLKNEWGKLREYTFNEADEKWNAKALIFSLKRRVLQAFST
                     APFFNNTIGTLTVRYESELTQQMLPALLDKLLEGISSNLESVLKRLRLEEIVKEQVDQ
                     FPVERLEEMVLSISKKEFKMITYLGGLLGGIIGAIQALFVILF*"
                     /label="yheB CDS"
     gene            977745..978878
                     /gene="yheB"
                     /locus_tag="BSU_09790"
                     /old_locus_tag="BSU09790"
                     /label="yheB gene"
     S_feature       978879..978970
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1054654_1054745"
                     /HighExp="S4, S5, S6, BT, S3, S7, dia15, B36, G/S, LoTm"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig=1
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S344"
     CDS             978971..979324
                     /gene="yheA"
                     /locus_tag="BSU_09800"
                     /old_locus_tag="BSU09800"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms; PubMedId: 19429628, 22720735"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved hypothetical protein"
                     /protein_id="NP_388861.1"
                     /db_xref="EnsemblGenomes-Gn:BSU09800"
                     /db_xref="EnsemblGenomes-Tr:CAB12819"
                     /db_xref="InterPro:IPR010368"
                     /db_xref="InterPro:IPR023378"
                     /db_xref="PDB:2OEE"
                     /db_xref="SubtiList:BG13033"
                     /db_xref="UniProtKB/Swiss-Prot:O07542"
                     /translation="MAVNFYDVAYDLENALRGSEEFTRLKNLYDEVNADESAKRMFEN
                     FRDVQLRLQQKQMAGEEITQEEVTQAQKTVALVQQHEKISQLMEAEQRMSMLIGELNK
                     IIMKPLEELYGSVEG*"
                     /label="yheA CDS"
     gene            978971..979324
                     /gene="yheA"
                     /locus_tag="BSU_09800"
                     /old_locus_tag="BSU09800"
                     /label="yheA gene"
     downshifts      979312
                     /Source="Nicolas_upshifts"
                     /id="D522"
                     /incds=0
                     /nref=159
                     /ntot=259
                     /MaxReadThrough="1.55668"
                     /MaxDrop="5.9901"
                     /score="24.5275597"
                     /energy="-12.3"
                     /TU="NA"
                     /idTUdmin="U780"
                     /TUdmin=0
                     /isTUend="TRUE"
                     /label="downshifts"
     CDS             complement(979368..980441)
                     /gene="yhaZ"
                     /locus_tag="BSU_09810"
                     /old_locus_tag="BSU09810"
                     /function="16.6: Maintain"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms; PubMedId: 16267290, 22933559"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved hypothetical protein"
                     /protein_id="NP_388862.1"
                     /db_xref="EnsemblGenomes-Gn:BSU09810"
                     /db_xref="EnsemblGenomes-Tr:CAB12820"
                     /db_xref="GOA:O07541"
                     /db_xref="InterPro:IPR011989"
                     /db_xref="InterPro:IPR014825"
                     /db_xref="InterPro:IPR016024"
                     /db_xref="InterPro:IPR021133"
                     /db_xref="SubtiList:BG13002"
                     /db_xref="UniProtKB/Swiss-Prot:O07541"
                     /translation="MADLKEIYNEELISQLIHHVRSSYPDFNKNRFLDTLRLEDWPEL
                     TLKERMRRVTVSLYETLPKQYVEALTILRDTAPHFKGLSGILFPDYVEQYGLAHWEES
                     IKALESFTQYSTSEFAVRPFLLLDQEKMIAQLLAWSEHKNEHVRRLASEGSRPRLPWG
                     KSIPALKSDPSPVLPILEKLMQDESLYVRKSVANNLNDISKTHPHLLRKVADQWYGTH
                     PHTDWIIKHAYRTLLKKGDKQALALFGYENADSIQLHDLTCQPKRIVIGESLEFSFYI
                     HSDRDQKVRIEYAIDFVKARGQRHQKVFKITETNIRKNETKSYTRIQSFKDLTTRKHY
                     KGIHTLSVIINGEVKDSLDFQVC*"
                     /label="yhaZ CDS"
     gene            complement(979368..980441)
                     /gene="yhaZ"
                     /locus_tag="BSU_09810"
                     /old_locus_tag="BSU09810"
                     /label="yhaZ gene"
     downshifts      complement(979475)
                     /Source="Nicolas_upshifts"
                     /id="D523"
                     /incds=1
                     /nref=16
                     /ntot=173
                     /MaxReadThrough="3.78071"
                     /MaxDrop="3.586"
                     /score="4.43596345"
                     /energy="-12.3"
                     /TU="U781"
                     /idTUdmin="U781"
                     /TUdmin="-109"
                     /isTUend="FALSE"
                     /label="downshifts"
     promotor_-10    complement(980463..980482)
                     /Source="Nicolas_upshift_promotors"
                     /id="U781"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.93006993006993"
                     /psig=1
                     /xcortree=2090
                     /SigmaFactorBS="ggtaggatcagttgttaatttttaggactataCACTTGATcc
                     agaacgtacatTCCCATACAATATAAATAATaaacgaaaaagcggtgtttatatggct
                     g"
                     /listShort="yhaZ"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(980475)
                     /Source="Nicolas_upshifts"
                     /id="U781"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.93006993006993"
                     /psig=1
                     /xcortree=2090
                     /SigmaFactorBS="ggtaggatcagttgttaatttttaggactataCACTTGATcc
                     agaacgtacatTCCCATACAATATAAATAATaaacgaaaaagcggtgtttatatggct
                     g"
                     /listShort="yhaZ"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(980496..980503)
                     /Source="Nicolas_upshift_promotors"
                     /id="U781"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.93006993006993"
                     /psig=1
                     /xcortree=2090
                     /SigmaFactorBS="ggtaggatcagttgttaatttttaggactataCACTTGATcc
                     agaacgtacatTCCCATACAATATAAATAATaaacgaaaaagcggtgtttatatggct
                     g"
                     /listShort="yhaZ"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-35    980578..980585
                     /Source="Nicolas_upshift_promotors"
                     /id="U782"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.882117882117882"
                     /psig=1
                     /xcortree=344
                     /SigmaFactorBS="ggatatacaaaagttggttactttttttagttaaaaaaacCC
                     TTGTCAtcggaaaggaaaacTGAGATAATAACATTGAAAGcgcctacacttacctatt
                     t"
                     /listShort="S345, S346, yhaX"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     upshifts        980598
                     /Source="Nicolas_upshifts"
                     /id="U782"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.882117882117882"
                     /psig=1
                     /xcortree=344
                     /SigmaFactorBS="ggatatacaaaagttggttactttttttagttaaaaaaacCC
                     TTGTCAtcggaaaggaaaacTGAGATAATAACATTGAAAGcgcctacacttacctatt
                     t"
                     /listShort="S345, S346, yhaX"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-10    980600..980619
                     /Source="Nicolas_upshift_promotors"
                     /id="U782"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.882117882117882"
                     /psig=1
                     /xcortree=344
                     /SigmaFactorBS="ggatatacaaaagttggttactttttttagttaaaaaaacCC
                     TTGTCAtcggaaaggaaaacTGAGATAATAACATTGAAAGcgcctacacttacctatt
                     t"
                     /listShort="S345, S346, yhaX"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     S_feature       980609..980762
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1056384_1056537"
                     /HighExp="M9-stat, BC, T0.30H, T1.30H, Lbstat, T1.0H,
                     T3.30H, T2.0H, T3.0H, M40t90"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig=1
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S345"
     downshifts      980719
                     /Source="Nicolas_upshifts"
                     /id="D524"
                     /incds=0
                     /nref=1
                     /ntot=37
                     /MaxReadThrough="7.40404"
                     /MaxDrop="2.6506"
                     /score="-6.05745557"
                     /energy="-4.8"
                     /TU="U782"
                     /idTUdmin="U782"
                     /TUdmin="-1056"
                     /isTUend="FALSE"
                     /label="downshifts"
     S_feature       980764..980847
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1056539_1056622"
                     /HighExp="M9-stat, B60, T2.0H, T1.30H, T0.30H, T2.30H,
                     T3.0H, T1.0H, Lbtran, BC"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig=1
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S346"
     downshifts      980804
                     /Source="Nicolas_upshifts"
                     /id="D525"
                     /incds=0
                     /nref=70
                     /ntot=231
                     /MaxReadThrough="4.88371"
                     /MaxDrop="4.4099"
                     /score="-6.05745557"
                     /energy="-4.8"
                     /TU="U782"
                     /idTUdmin="U782"
                     /TUdmin="-971"
                     /isTUend="FALSE"
                     /label="downshifts"
     promotor_-35    980860..980865
                     /Source="Nicolas_upshift_promotors"
                     /id="U783"
                     /multdbtbs="SigE"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp=1
                     /psig=1
                     /xcortree=1164
                     /SigmaFactorBS="gccaggctttttttgctttaagaaaaggttGTTCTAaacaca
                     gagacagggTCATATCCTATACACAAGTacagtcatcaaggagggggacatctctgtg
                     t"
                     /listShort="yhaX, hemZ"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    980881..980899
                     /Source="Nicolas_upshift_promotors"
                     /id="U783"
                     /multdbtbs="SigE"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp=1
                     /psig=1
                     /xcortree=1164
                     /SigmaFactorBS="gccaggctttttttgctttaagaaaaggttGTTCTAaacaca
                     gagacagggTCATATCCTATACACAAGTacagtcatcaaggagggggacatctctgtg
                     t"
                     /listShort="yhaX, hemZ"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        980890
                     /Source="Nicolas_upshifts"
                     /id="U783"
                     /multdbtbs="SigE"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp=1
                     /psig=1
                     /xcortree=1164
                     /SigmaFactorBS="gccaggctttttttgctttaagaaaaggttGTTCTAaacaca
                     gagacagggTCATATCCTATACACAAGTacagtcatcaaggagggggacatctctgtg
                     t"
                     /listShort="yhaX, hemZ"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             980927..981793
                     /gene="yhaX"
                     /locus_tag="BSU_09830"
                     /old_locus_tag="BSU09830"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 11988534; Product type
                     e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative hydrolase"
                     /protein_id="NP_388864.2"
                     /db_xref="EnsemblGenomes-Gn:BSU09830"
                     /db_xref="EnsemblGenomes-Tr:CAB12822"
                     /db_xref="GOA:O07539"
                     /db_xref="InterPro:IPR000150"
                     /db_xref="InterPro:IPR006379"
                     /db_xref="InterPro:IPR036412"
                     /db_xref="PDB:3DNP"
                     /db_xref="SubtiList:BG13000"
                     /db_xref="UniProtKB/Swiss-Prot:O07539"
                     /translation="MSKQLLALNIDGALLRSNGKIHQATKDAIEYVKKKGIYVTLVTN
                     RHFRSAQKIAKSLKLDAKLITHSGAYIAEKIDAPFFEKRISDDHTFNIVQVLESYQCN
                     IRLLHEKYSIGNKKKVNSNLLGKALIHPSDPIFYPVQFVESLSDLLMDEPVSAPVIEV
                     YTEHDIQHDITETITKAFPAVDVIRVNDEKLNIVPKGVSKEAGLALVASELGLSMDDV
                     VAIGHQYDDLPMIELAGLGVAMGNAVPEIKRKADWVTRSNDEQGVAYMMKEYFRMQQR
                     KGFLDKFHMKRV*"
                     /label="yhaX CDS"
     gene            980927..981793
                     /gene="yhaX"
                     /locus_tag="BSU_09830"
                     /old_locus_tag="BSU09830"
                     /label="yhaX gene"
     downshifts      981775
                     /Source="Nicolas_upshifts"
                     /id="D526"
                     /incds=0
                     /nref=22
                     /ntot=67
                     /MaxReadThrough="3.99904"
                     /MaxDrop="4.7771"
                     /score="15.7706912"
                     /energy="-16.6"
                     /TU="U783"
                     /idTUdmin="U782"
                     /TUdmin=0
                     /isTUend="TRUE"
                     /label="downshifts"
     promotor_-35    981838..981841
                     /Source="Nicolas_upshift_promotors"
                     /id="U784"
                     /multdbtbs="SigA"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.786213786213786"
                     /psig=1
                     /xcortree=1455
                     /SigmaFactorBS="cgcgccctgacaggtgcggcggcttttttgccggATTGattt
                     tagcagtttaTTTCTGTACACTAAAGAAAGttttgaatctgataaattaggtgatgaa
                     g"
                     /listShort="hemZ"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    981856..981875
                     /Source="Nicolas_upshift_promotors"
                     /id="U784"
                     /multdbtbs="SigA"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.786213786213786"
                     /psig=1
                     /xcortree=1455
                     /SigmaFactorBS="cgcgccctgacaggtgcggcggcttttttgccggATTGattt
                     tagcagtttaTTTCTGTACACTAAAGAAAGttttgaatctgataaattaggtgatgaa
                     g"
                     /listShort="hemZ"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        981864
                     /Source="Nicolas_upshifts"
                     /id="U784"
                     /multdbtbs="SigA"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.786213786213786"
                     /psig=1
                     /xcortree=1455
                     /SigmaFactorBS="cgcgccctgacaggtgcggcggcttttttgccggATTGattt
                     tagcagtttaTTTCTGTACACTAAAGAAAGttttgaatctgataaattaggtgatgaa
                     g"
                     /listShort="hemZ"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             981905..983410
                     /gene="hemZ"
                     /locus_tag="BSU_09840"
                     /old_locus_tag="BSU09840"
                     /EC_number="1.3.99.-"
                     /function="16.2: Construct biomass (Anabolism)"
                     /function="16.10: Respire"
                     /experiment="publication(s) with functional evidences,
                     PMID:10498703, 21255303"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 10498703, 21255303;
                     Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="coproporphyrinogen III oxidase"
                     /protein_id="NP_388865.1"
                     /db_xref="EnsemblGenomes-Gn:BSU09840"
                     /db_xref="EnsemblGenomes-Tr:CAB12823"
                     /db_xref="GOA:Q796V8"
                     /db_xref="InterPro:IPR006638"
                     /db_xref="InterPro:IPR007197"
                     /db_xref="InterPro:IPR013785"
                     /db_xref="InterPro:IPR023995"
                     /db_xref="InterPro:IPR034505"
                     /db_xref="SubtiList:BG12999"
                     /db_xref="UniProtKB/Swiss-Prot:Q796V8"
                     /translation="MQIKIEGIHDDRLHRPLQNIANLFYEECELAYGGEEPADFVISL
                     ALSQTDEHVTVSGEVKGTGIKEQHTKFFSPDMTEKEAFKQVKNTISYVYLNLLQAHTG
                     ITQKWGILTGIRPTKLLHKKLQSGMSKEQAHAELKKDYLIHDEKIMLMQEIVDRQLAA
                     VPDLYRVKDEVSIYIGIPFCPTKCAYCTFPAYAIQGQAGRVGSFLWGLHYEMQKIGEW
                     LKEHDVKVTTIYFGGGTPTSITAEEMDLLYEEMVRSFPDVKNIREITVEAGRPDTITE
                     EKLAVLNKYDIDRISINPQSYENETLKAIGRHHTVEETIEKYHLSRQHGMNNINMDLI
                     IGLPGEGVKEFRHSLSETEKLMPESLTVHTLSFKRASEMTRNKHKYKVAGREEVSQMM
                     EDAVAWTKEHGYVPYYLYRQKNILGNLENVGYSLPGQESIYNIMIMEEVQTIIGIGCG
                     AASKFIDRDTGKITHFANPKDPKSYNERFEHYTDEKIKYLEQIFEKTTKQH*"
                     /label="hemZ CDS"
     gene            981905..983410
                     /gene="hemZ"
                     /locus_tag="BSU_09840"
                     /old_locus_tag="BSU09840"
                     /label="hemZ gene"
     downshifts      983380
                     /Source="Nicolas_upshifts"
                     /id="D527"
                     /incds=0
                     /nref=113
                     /ntot=234
                     /MaxReadThrough="0.523269999999999"
                     /MaxDrop="5.05369"
                     /score="38.1573779"
                     /energy="-14.4"
                     /TU="NA"
                     /idTUdmin="U783"
                     /TUdmin="-1"
                     /isTUend="TRUE"
                     /label="downshifts"
     CDS             complement(983428..984645)
                     /gene="khtU"
                     /locus_tag="BSU_09850"
                     /old_locus_tag="BSU09850"
                     /function="16.1: Circulate"
                     /experiment="publication(s) with functional evidences,
                     PMID:7934942, 14987767, 15849754, 15919996, 16850406,
                     24330391"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 7934942, 14987767,
                     15849754, 15919996, 16850406, 24330391; Product type t :
                     transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="proton/potassium antiporter; methylglyoxal
                     resistance"
                     /protein_id="NP_388866.2"
                     /db_xref="EnsemblGenomes-Gn:BSU09850"
                     /db_xref="EnsemblGenomes-Tr:CAB12825"
                     /db_xref="GOA:O07536"
                     /db_xref="InterPro:IPR006153"
                     /db_xref="SubtiList:BG12997"
                     /db_xref="UniProtKB/Swiss-Prot:O07536"
                     /translation="MDHLVFEVGTALVLVAIASVIANKIKFSIIPFLIVLGMLVGPHA
                     PKMGIIDLTFIQSSEIIEFFGRMGVLFLLFYLGLEFSVGKLIKSGKSIAVGGTIYILI
                     NFSLGLLYGFITGFSFLEVLILAGVITISSSAIVAKVLVDLKRTANPETELILGIIMF
                     EDIFLAVYLSVVSGLILGDATSVGSALLSILIAFGYMLLFFIAARKLPPLLNKLLDIR
                     SNEVFIIVIFAALFFIAGFSETIHVAEAIGALLLGLVFSETEHSDRIEHLVVPFRDFF
                     GAMFFFSFGLSIDPFSLGEAVWLALGAVILTILGNFIAGMVAGRRAGLSHKASSNIGL
                     TIVSRGEFSIIVANLGIAGGLSATLKPFAALYVLILAILGPLVTKESKRIYRLLNKVF
                     KWKPEVQPAKKQG*"
                     /label="khtU CDS"
     gene            complement(983428..984645)
                     /gene="khtU"
                     /locus_tag="BSU_09850"
                     /old_locus_tag="BSU09850"
                     /label="khtU gene"
     downshifts      complement(983434)
                     /Source="Nicolas_upshifts"
                     /id="D528"
                     /incds=0
                     /nref=154
                     /ntot=249
                     /MaxReadThrough="1.74386"
                     /MaxDrop="6.8685"
                     /score="8.64654688"
                     /energy="-14.4"
                     /TU="NA"
                     /idTUdmin="U785"
                     /TUdmin=1
                     /isTUend="TRUE"
                     /label="downshifts"
     CDS             complement(984652..985149)
                     /gene="khtT"
                     /locus_tag="BSU_09860"
                     /old_locus_tag="BSU09860"
                     /function="16.1: Circulate"
                     /experiment="publication(s) with functional evidences,
                     PMID:14987767, 17679694"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 14987767, 17679694;
                     Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="K+/H+ antiporter for K+ efflux"
                     /protein_id="NP_388867.1"
                     /db_xref="EnsemblGenomes-Gn:BSU09860"
                     /db_xref="EnsemblGenomes-Tr:CAB12826"
                     /db_xref="GOA:O07535"
                     /db_xref="InterPro:IPR006037"
                     /db_xref="InterPro:IPR026278"
                     /db_xref="InterPro:IPR036721"
                     /db_xref="SubtiList:BG12996"
                     /db_xref="UniProtKB/Swiss-Prot:O07535"
                     /translation="MNIKENDLPGIGKKFEIETRSHEKMTIIIHDDGRREIYRFNDRD
                     PDELLSNISLDDSEARQIAAILGGMVYKPQALESIEMAFSDLIIEWFKVEKGAKSIGR
                     TLGELDVRQNYDVTVIAIIKHNQEKLLNPGADSIIEENDTLVLSGERKHLKKLIHDFL
                     SGEGV*"
                     /label="khtT CDS"
     gene            complement(984652..985149)
                     /gene="khtT"
                     /locus_tag="BSU_09860"
                     /old_locus_tag="BSU09860"
                     /label="khtT gene"
     CDS             complement(985213..985551)
                     /gene="khtS"
                     /locus_tag="BSU_09870"
                     /old_locus_tag="BSU09870"
                     /function="16.1: Circulate"
                     /experiment="publication(s) with functional evidences,
                     PMID:14987767, 17679694"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 14987767, 17679694;
                     Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="K+/H+ antiporter for K+ efflux"
                     /protein_id="NP_388868.1"
                     /db_xref="EnsemblGenomes-Gn:BSU09870"
                     /db_xref="EnsemblGenomes-Tr:CAB12827"
                     /db_xref="GOA:O07534"
                     /db_xref="SubtiList:BG12995"
                     /db_xref="UniProtKB/Swiss-Prot:O07534"
                     /translation="MRREERNMDKLLISFLLSLFMVYFPPSDVVLPSQFEASTDSYVP
                     MSSYPQETQSAKTPSPGSMHPAELIKEYSPLAQSVRQLSVKPLDEPLINRLEKALAVP
                     VKYQSNYLRI*"
                     /label="khtS CDS"
     gene            complement(985213..985551)
                     /gene="khtS"
                     /locus_tag="BSU_09870"
                     /old_locus_tag="BSU09870"
                     /label="khtS gene"
     promotor_-10    complement(985563..985582)
                     /Source="Nicolas_upshift_promotors"
                     /id="U785"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.95004995004995"
                     /psig="0.97902097902098"
                     /xcortree=628
                     /SigmaFactorBS="acctttttatttttcaaggtcaatagatactgaaaaatgcat
                     atTGTTTGAAtggaaacataaagTTTTATATAGTGAAAAAGAAgggatatcttgatga
                     g"
                     /listShort="khtS, khtT, yhaU"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(985587)
                     /Source="Nicolas_upshifts"
                     /id="U785"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.95004995004995"
                     /psig="0.97902097902098"
                     /xcortree=628
                     /SigmaFactorBS="acctttttatttttcaaggtcaatagatactgaaaaatgcat
                     atTGTTTGAAtggaaacataaagTTTTATATAGTGAAAAAGAAgggatatcttgatga
                     g"
                     /listShort="khtS, khtT, yhaU"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(985596..985603)
                     /Source="Nicolas_upshift_promotors"
                     /id="U785"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.95004995004995"
                     /psig="0.97902097902098"
                     /xcortree=628
                     /SigmaFactorBS="acctttttatttttcaaggtcaatagatactgaaaaatgcat
                     atTGTTTGAAtggaaacataaagTTTTATATAGTGAAAAAGAAgggatatcttgatga
                     g"
                     /listShort="khtS, khtT, yhaU"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-35    985623..985630
                     /Source="Nicolas_upshift_promotors"
                     /id="U786"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.825174825174825"
                     /psig="0.971028971028971"
                     /xcortree=364
                     /SigmaFactorBS="attcaaacaatatgcatttttcagtatcTATTGACCttgaaa
                     aataaaaaGGTTTATTTGGGGATGGCGGggaatgtataggagaaagaaaaaagtaagc
                     g"
                     /listShort="yhaR"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    985645..985664
                     /Source="Nicolas_upshift_promotors"
                     /id="U786"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.825174825174825"
                     /psig="0.971028971028971"
                     /xcortree=364
                     /SigmaFactorBS="attcaaacaatatgcatttttcagtatcTATTGACCttgaaa
                     aataaaaaGGTTTATTTGGGGATGGCGGggaatgtataggagaaagaaaaaagtaagc
                     g"
                     /listShort="yhaR"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        985655
                     /Source="Nicolas_upshifts"
                     /id="U786"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.825174825174825"
                     /psig="0.971028971028971"
                     /xcortree=364
                     /SigmaFactorBS="attcaaacaatatgcatttttcagtatcTATTGACCttgaaa
                     aataaaaaGGTTTATTTGGGGATGGCGGggaatgtataggagaaagaaaaaagtaagc
                     g"
                     /listShort="yhaR"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             985716..986483
                     /gene="yhaR"
                     /locus_tag="BSU_09880"
                     /old_locus_tag="BSU09880"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 22961985; Product type
                     e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative dehydratase / isomerase"
                     /protein_id="NP_388869.3"
                     /db_xref="EnsemblGenomes-Gn:BSU09880"
                     /db_xref="EnsemblGenomes-Tr:CAB12828"
                     /db_xref="GOA:O07533"
                     /db_xref="InterPro:IPR001753"
                     /db_xref="InterPro:IPR014748"
                     /db_xref="InterPro:IPR029045"
                     /db_xref="SubtiList:BG12994"
                     /db_xref="UniProtKB/Swiss-Prot:O07533"
                     /translation="MEFVQYACNGAVAEIILNRPDAHHALNEQMLSELKEAVEMAAAS
                     EALIVLLRGSGKGFSAGGDIRMMTSEHDPDQFKRLMDTIEAVTLNLYQMKKVTIAAIH
                     GAAAGLGLSLALCADIVLAEKNAVLAMNFIGIGLVPDGGGHYLLKKRIGEAKAKKLIW
                     SGKKLSASEAADMGLLDGTFAGDPAEGARPIIETLLASPLLAMIETKGIFQSLQIEEL
                     KKVLSLERSAQERMRRTKDHQEGIRAFLEKREPKFQA*"
                     /label="yhaR CDS"
     gene            985716..986483
                     /gene="yhaR"
                     /locus_tag="BSU_09880"
                     /old_locus_tag="BSU09880"
                     /label="yhaR gene"
     downshifts      986484
                     /Source="Nicolas_upshifts"
                     /id="D529"
                     /incds=0
                     /nref=2
                     /ntot=99
                     /MaxReadThrough="1.78111"
                     /MaxDrop="4.66019"
                     /score="-8.79921781"
                     /energy="-7.5"
                     /TU="NA"
                     /idTUdmin="U786"
                     /TUdmin=0
                     /isTUend="TRUE"
                     /label="downshifts"
     CDS             complement(986504..986689)
                     /gene="yhzD"
                     /locus_tag="BSU_09889"
                     /old_locus_tag="BSU09889"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved hypothetical protein"
                     /protein_id="YP_003097698.1"
                     /db_xref="EnsemblGenomes-Gn:BSU09889"
                     /db_xref="EnsemblGenomes-Tr:CAX52586"
                     /db_xref="InterPro:IPR025544"
                     /db_xref="UniProtKB/Swiss-Prot:C0H3Y1"
                     /translation="MADYFLTVFDPSGNTLVNEQFEAEHEEAAKTHGEALLKEKELHS
                     HTHRLVNAAGKLILFHR*"
                     /label="yhzD CDS"
     gene            complement(986504..986689)
                     /gene="yhzD"
                     /locus_tag="BSU_09889"
                     /old_locus_tag="BSU09889"
                     /label="yhzD gene"
     promotor_-10    complement(986725..986743)
                     /Source="Nicolas_upshift_promotors"
                     /id="U787"
                     /multdbtbs="-"
                     /comp="M1"
                     /sig="SigH"
                     /pcomp="0.637362637362637"
                     /psig="0.637362637362637"
                     /xcortree=957
                     /SigmaFactorBS="acccattatatactaattttggataaagcataatAAAGGATT
                     TtgatttccttTTTAGAATATAAATGAAGAaagactgataaaccttaaaatggaggag
                     a"
                     /listShort="yhzD"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(986736)
                     /Source="Nicolas_upshifts"
                     /id="U787"
                     /multdbtbs="-"
                     /comp="M1"
                     /sig="SigH"
                     /pcomp="0.637362637362637"
                     /psig="0.637362637362637"
                     /xcortree=957
                     /SigmaFactorBS="acccattatatactaattttggataaagcataatAAAGGATT
                     TtgatttccttTTTAGAATATAAATGAAGAaagactgataaaccttaaaatggaggag
                     a"
                     /listShort="yhzD"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(986754..986762)
                     /Source="Nicolas_upshift_promotors"
                     /id="U787"
                     /multdbtbs="-"
                     /comp="M1"
                     /sig="SigH"
                     /pcomp="0.637362637362637"
                     /psig="0.637362637362637"
                     /xcortree=957
                     /SigmaFactorBS="acccattatatactaattttggataaagcataatAAAGGATT
                     TtgatttccttTTTAGAATATAAATGAAGAaagactgataaaccttaaaatggaggag
                     a"
                     /listShort="yhzD"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-35    986763..986766
                     /Source="Nicolas_upshift_promotors"
                     /id="U788"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.797202797202797"
                     /psig="0.974025974025974"
                     /xcortree=2418
                     /SigmaFactorBS="tttatattctaaaaaggaaatcaaaatcctttATTAtgcttt
                     atccaaaaTTAGTATATAATGGGTCAGGgaaggaggagattcagtgcttacaattgat
                     c"
                     /listShort="natA, natB"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    986781..986800
                     /Source="Nicolas_upshift_promotors"
                     /id="U788"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.797202797202797"
                     /psig="0.974025974025974"
                     /xcortree=2418
                     /SigmaFactorBS="tttatattctaaaaaggaaatcaaaatcctttATTAtgcttt
                     atccaaaaTTAGTATATAATGGGTCAGGgaaggaggagattcagtgcttacaattgat
                     c"
                     /listShort="natA, natB"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        986791
                     /Source="Nicolas_upshifts"
                     /id="U788"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.797202797202797"
                     /psig="0.974025974025974"
                     /xcortree=2418
                     /SigmaFactorBS="tttatattctaaaaaggaaatcaaaatcctttATTAtgcttt
                     atccaaaaTTAGTATATAATGGGTCAGGgaaggaggagattcagtgcttacaattgat
                     c"
                     /listShort="natA, natB"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             986816..987712
                     /gene="yhaQ"
                     /locus_tag="BSU_09890"
                     /old_locus_tag="BSU09890"
                     /function="16.1: Circulate"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 2a: Function from experimental evidences
                     in other organisms; PubMedId: 9106203, 10356997, 12374817;
                     Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="Na+-dependent efflux ABC transporter
                     (ATP-binding protein)"
                     /protein_id="NP_388870.2"
                     /db_xref="EnsemblGenomes-Gn:BSU09890"
                     /db_xref="EnsemblGenomes-Tr:CAB12829"
                     /db_xref="GOA:C0SPB4"
                     /db_xref="InterPro:IPR003439"
                     /db_xref="InterPro:IPR003593"
                     /db_xref="InterPro:IPR017871"
                     /db_xref="InterPro:IPR025302"
                     /db_xref="InterPro:IPR027417"
                     /db_xref="SubtiList:BG12993"
                     /db_xref="UniProtKB/Swiss-Prot:C0SPB4"
                     /translation="MLTIDHVTKTFGDYKAVDGLDLDIPEQQMFGLLGANGAGKTTTF
                     RMILGLLSITEGSISWKGRPVNYHISNKIGYLPEERGLYPKMKVRDQLVYLARLKGME
                     KREAVKELGTWLERFNITDYENKKVEELSKGNQQKIQFISAVLHKPELLILDEPFSGL
                     DPVNVELLKEAVISLKNSGVSILFSSHRMEHVEELCENLCILQKGKPVVQGKLKEIKR
                     SFGKKNVTIHSDDDLRFLQSHEGILQWKETADGVKLQIANEDISQEIFAMLQGKGFIR
                     KFELEEPSLHDIFIEKVGAVYE*"
                     /label="yhaQ CDS"
     gene            986816..987712
                     /gene="yhaQ"
                     /locus_tag="BSU_09890"
                     /old_locus_tag="BSU09890"
                     /label="yhaQ gene"
     CDS             987705..988964
                     /gene="yhaP"
                     /locus_tag="BSU_09900"
                     /old_locus_tag="BSU09900"
                     /function="16.1: Circulate"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 2a: Function from experimental evidences
                     in other organisms; PubMedId: 9106203, 10356997, 15849754,
                     16850406; Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="Na+-dependent exporter (ABC permease)"
                     /protein_id="NP_388871.2"
                     /db_xref="EnsemblGenomes-Gn:BSU09900"
                     /db_xref="EnsemblGenomes-Tr:CAB12830"
                     /db_xref="GOA:O07523"
                     /db_xref="SubtiList:BG12992"
                     /db_xref="UniProtKB/Swiss-Prot:O07523"
                     /translation="MNKFWIMLSHTYKNKIMAKSFIISTVITVLLVLVVTNLESIISL
                     FQGDDAKEKIAVVDETNELYPVFSKQLKAVDTDGDLDVKLSKQSEDEVTKQVKDESLD
                     GMLIIKRDEKGTISGTYKALTISDESTYQTLQQALTQTKTAVGTAELGVSQETISSLY
                     APVTVGQKALKEGAKSEEELGQTVGLVYIMLFVIYFSVIMYASMIAMEVATEKSSRVM
                     EILISSMPPIQQMFAKLLGIGLVGITQLAIIIGAGSLSLKLNQKSETASSVGGFLNLT
                     DVSATTVIYAVIFFLLGYFLYATLAAFLGSVVSRIEDVQQTITPMTLLVVAGFMIAMF
                     GLNAPDAGFITVTSFIPFFTPMIMFLRVGMLDIPFWQAAVGIGITLLTIVILAVIGAR
                     IYKGGVLIYGNSSAFKAIKQALRLAKN*"
                     /label="yhaP CDS"
     gene            987705..988964
                     /gene="yhaP"
                     /locus_tag="BSU_09900"
                     /old_locus_tag="BSU09900"
                     /label="yhaP gene"
     downshifts      988948
                     /Source="Nicolas_upshifts"
                     /id="D530"
                     /incds=0
                     /nref=19
                     /ntot=187
                     /MaxReadThrough="2.50232"
                     /MaxDrop="3.26822"
                     /score="8.93460501"
                     /energy="-12.8"
                     /TU="NA"
                     /idTUdmin="U788"
                     /TUdmin=0
                     /isTUend="TRUE"
                     /label="downshifts"
     promotor_-35    989012..989019
                     /Source="Nicolas_upshift_promotors"
                     /id="U789"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.682317682317682"
                     /psig="0.998001998001998"
                     /xcortree=2088
                     /SigmaFactorBS="cctggggattctcaggctgtttctttattgacagaaCGTGCA
                     TTcgcaagaattcGGTGCTAAAATAAGGGTACTtcatcctggaaaggagcagaatgtt
                     g"
                     /listShort="yhaO, yhaN, yhaM"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    989031..989050
                     /Source="Nicolas_upshift_promotors"
                     /id="U789"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.682317682317682"
                     /psig="0.998001998001998"
                     /xcortree=2088
                     /SigmaFactorBS="cctggggattctcaggctgtttctttattgacagaaCGTGCA
                     TTcgcaagaattcGGTGCTAAAATAAGGGTACTtcatcctggaaaggagcagaatgtt
                     g"
                     /listShort="yhaO, yhaN, yhaM"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        989036
                     /Source="Nicolas_upshifts"
                     /id="U789"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.682317682317682"
                     /psig="0.998001998001998"
                     /xcortree=2088
                     /SigmaFactorBS="cctggggattctcaggctgtttctttattgacagaaCGTGCA
                     TTcgcaagaattcGGTGCTAAAATAAGGGTACTtcatcctggaaaggagcagaatgtt
                     g"
                     /listShort="yhaO, yhaN, yhaM"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             989071..990297
                     /gene="yhaO"
                     /locus_tag="BSU_09910"
                     /old_locus_tag="BSU09910"
                     /function="16.11: Scavenge (Catabolism)"
                     /function="16.6: Maintain"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 16267290; Product type
                     e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative DNA repair exonuclease"
                     /protein_id="NP_388872.1"
                     /db_xref="EnsemblGenomes-Gn:BSU09910"
                     /db_xref="EnsemblGenomes-Tr:CAB12831"
                     /db_xref="GOA:O07522"
                     /db_xref="InterPro:IPR004843"
                     /db_xref="InterPro:IPR014576"
                     /db_xref="InterPro:IPR029052"
                     /db_xref="SubtiList:BG12991"
                     /db_xref="UniProtKB/Swiss-Prot:O07522"
                     /translation="MLTDLTFIHAADLHLDSPFYGISHLPEPIFARIKESTFASVRHM
                     IDAAVREHVDFILLAGDLFDEANRSLKAQLFLKKQFERLRECGISVYVIFGNHDHLGG
                     EWTPIEWPENVHIFSSAVPEEKSFFKEGRRIASIYGFSYQARALMENQAARYRRSTDA
                     PFHIGMLHGTLSGSEGHDPYCPFTHDDLVKSGMDYWALGHIHKRQVLSAEHPAVIYPG
                     NTQARHIKETGDKGYYLVHVTNGDISYEFQRAHDVLWEKAAVDVTEAKNMTALFQMVE
                     DTFSKLRKKGSPVCVRLVLQGTAPEWLLEAPKGTLDEFLEALQEQEAEEERFVWPLRL
                     DDETENEANLTNLDPFFGGLFEDIDRSDLSDVLEGLERHPVYRRHADRFSQEEVKEIK
                     EQAQIILKRQLKVLDT*"
                     /label="yhaO CDS"
     gene            989071..990297
                     /gene="yhaO"
                     /locus_tag="BSU_09910"
                     /old_locus_tag="BSU09910"
                     /label="yhaO gene"
     downshifts      complement(989772)
                     /Source="Nicolas_upshifts"
                     /id="D531"
                     /incds=1
                     /nref=1
                     /ntot=20
                     /MaxReadThrough="0.0165100000000002"
                     /MaxDrop="3.62411"
                     /score="-5.83060322"
                     /energy="-15.2"
                     /TU="NA"
                     /idTUdmin="U787"
                     /TUdmin="-3300"
                     /isTUend="FALSE"
                     /label="downshifts"
     CDS             990302..993193
                     /gene="sbcE"
                     /locus_tag="BSU_09920"
                     /old_locus_tag="BSU09920"
                     /function="16.6: Maintain"
                     /experiment="publication(s) with functional evidences,
                     PMID:16267290, 19906728, 21517913"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 16267290, 19906728,
                     21517913; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="ATPase involved in DNA double strand break
                     repair and recombination"
                     /protein_id="NP_388873.1"
                     /db_xref="EnsemblGenomes-Gn:BSU09920"
                     /db_xref="EnsemblGenomes-Tr:CAB12832"
                     /db_xref="GOA:O08455"
                     /db_xref="InterPro:IPR027417"
                     /db_xref="SubtiList:BG12990"
                     /db_xref="UniProtKB/Swiss-Prot:O08455"
                     /translation="MTALRIISLHIYQYGKFSNRTFDFSASPVQVIYGLNEAGKTTMM
                     SFIESMLFGFPKTKKYEPKTGGVYGGVLEAEHPEYGVLKIERTKGTAEKLSVYTEKGE
                     VKQGDVLKQLFQGTDRSLYKAIYSFDVFGLQEIHAFNRDKIGEFLLFSSLFGAEAVSK
                     LDSRLTKESERLYKPNGRNPQLNQELETLKQLAVKLKQAEAEEAGYHQLLEEKRTLEA
                     RLAAAETELKETAGHIRMIEGAIERKPLLNEKATLEQVIAEFPEHAGQFPADGLHQLE
                     KYESHLHPKSAQLEALRVKMAELDKQRQKLIPDKELLAKETLIQELSAAFHMYQSWGE
                     QLAAIQAQLRQTSAQTAAGLEQLNKTDENELLNMNTSYDYEWQLQQAVQQYVQARDRK
                     RQLDETFELARQELEDAEKAVRAASSAILENSQRKDKEAALRAYDETQGQHQEQAKLR
                     EQLTFFERQQAKQKKTVIAAGMLFIVLFSLLQQWIPAISFGAALIVYWLVSGKSSSRN
                     SRETRQPMTDISPAEAEMLREALWEDDRNKQHLLTQRAALQQKEAAYERVIQQFEQWE
                     AEMAPSFTQVERFMNELGFKEDPSFLLDAYSLMKDVKKEVKKKHELTIEAGRLKKHRR
                     TFEERVSMLLPVNQSQDISISDALHTLRKNIEREKEIEKQKKEIETDIHYTKEQMLEL
                     EQEIQYFHAQIEQLFAAAAAKDRDAFFAIAAISRQLKDTENKLHHVNAQLQGGYPEEL
                     ELADSNTLSELKDKQFVENERKERLTEEIEQLRSQIALLSVKQEQLEASGMVSDLKLQ
                     TEMQKERVKETAKKWASIQMVKQVIRNKLERHKKIELPRLLETAGEFFRPLTDGNYQT
                     IYFSETDDSIMVMHRDGTVYHAEELSQGTCEQLYTAIRFALAVTRQGESKLPFQLDDS
                     FVHFDQERLKRVLHVLYDLSEGGRQILYFTCHEHVKDAFHSSQIIHLVS*"
                     /label="sbcE CDS"
     gene            990302..993193
                     /gene="sbcE"
                     /locus_tag="BSU_09920"
                     /old_locus_tag="BSU09920"
                     /label="sbcE gene"
     promotor_-35    991583..991588
                     /Source="Nicolas_upshift_promotors"
                     /id="U790"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.983016983016983"
                     /psig="0.983016983016983"
                     /xcortree=796
                     /SigmaFactorBS="tcgtccgcgattcttgaaaacagccaaagaaaaGATAAAgaa
                     gcagctcttagaGCATATGATGAAACACAGGggcagcaccaagagcaagcgaagctca
                     g"
                     /listShort="yhaM"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    991604..991622
                     /Source="Nicolas_upshift_promotors"
                     /id="U790"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.983016983016983"
                     /psig="0.983016983016983"
                     /xcortree=796
                     /SigmaFactorBS="tcgtccgcgattcttgaaaacagccaaagaaaaGATAAAgaa
                     gcagctcttagaGCATATGATGAAACACAGGggcagcaccaagagcaagcgaagctca
                     g"
                     /listShort="yhaM"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        991610
                     /Source="Nicolas_upshifts"
                     /id="U790"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.983016983016983"
                     /psig="0.983016983016983"
                     /xcortree=796
                     /SigmaFactorBS="tcgtccgcgattcttgaaaacagccaaagaaaaGATAAAgaa
                     gcagctcttagaGCATATGATGAAACACAGGggcagcaccaagagcaagcgaagctca
                     g"
                     /listShort="yhaM"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    993201..993206
                     /Source="Nicolas_upshift_promotors"
                     /id="U791"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.420579420579421"
                     /psig="0.998001998001998"
                     /xcortree=2174
                     /SigmaFactorBS="atccatttggtgtcataaaagaggtTCTATAgctgaaaatcg
                     gtaTGTGATATACTGGTATTATGtaagatacggagggagctttaatagaatggctaaa
                     g"
                     /listShort="yhaM"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    993221..993240
                     /Source="Nicolas_upshift_promotors"
                     /id="U791"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.420579420579421"
                     /psig="0.998001998001998"
                     /xcortree=2174
                     /SigmaFactorBS="atccatttggtgtcataaaagaggtTCTATAgctgaaaatcg
                     gtaTGTGATATACTGGTATTATGtaagatacggagggagctttaatagaatggctaaa
                     g"
                     /listShort="yhaM"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        993236
                     /Source="Nicolas_upshifts"
                     /id="U791"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.420579420579421"
                     /psig="0.998001998001998"
                     /xcortree=2174
                     /SigmaFactorBS="atccatttggtgtcataaaagaggtTCTATAgctgaaaatcg
                     gtaTGTGATATACTGGTATTATGtaagatacggagggagctttaatagaatggctaaa
                     g"
                     /listShort="yhaM"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             993267..994211
                     /gene="yhaM"
                     /locus_tag="BSU_09930"
                     /old_locus_tag="BSU09930"
                     /EC_number="3.1.-.-"
                     /function="16.6: Maintain"
                     /experiment="publication(s) with functional evidences,
                     PMID:12399495, 15805522, 15983136, 16267290, 19553197,
                     19880604"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 12399495, 15805522,
                     15983136, 16267290, 19553197, 19880604; Product type e :
                     enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="3'-5' exonuclease"
                     /protein_id="NP_388874.1"
                     /db_xref="EnsemblGenomes-Gn:BSU09930"
                     /db_xref="EnsemblGenomes-Tr:CAB12833"
                     /db_xref="GOA:O07521"
                     /db_xref="InterPro:IPR003607"
                     /db_xref="InterPro:IPR006674"
                     /db_xref="InterPro:IPR012340"
                     /db_xref="InterPro:IPR020873"
                     /db_xref="SubtiList:BG12989"
                     /db_xref="UniProtKB/Swiss-Prot:O07521"
                     /translation="MAKGIMLHEVGEQVDQYLLIKSSTKGIASNGKPFLTLMLQDQSG
                     DIEAKLWDAKQSDEVTYAPQTIVKVVGDVHHYRGRTQLKLRNIRPVSEQENVNIDDFL
                     ETAPIPKNEMMDTITQYIFEMKNPNIQRITRFLVKKHEAEFMDYPAATKNHHEFVSGL
                     AYHVVSMLNLAKAIADLYPSLDRDLLYAGVILHDLGKVKELSGPVSTSYTVEGNLLGH
                     ISIMVTELSKAAEELQIDSEEVLILQHLILSHHGKAEWGSPKPPMVKEAEILHYIDNL
                     DAKMNMMDRALERVKPGEYTERVFALENRSFYKPTFHK*"
                     /label="yhaM CDS"
     gene            993267..994211
                     /gene="yhaM"
                     /locus_tag="BSU_09930"
                     /old_locus_tag="BSU09930"
                     /label="yhaM gene"
     downshifts      994189
                     /Source="Nicolas_upshifts"
                     /id="D532"
                     /incds=0
                     /nref=183
                     /ntot=261
                     /MaxReadThrough="3.02818"
                     /MaxDrop="5.88173"
                     /score="6.06919899"
                     /energy="-15.8"
                     /TU="NA"
                     /idTUdmin="U789"
                     /TUdmin=5
                     /isTUend="TRUE"
                     /label="downshifts"
     promotor_-35    994270..994275
                     /Source="Nicolas_upshift_promotors"
                     /id="U792"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.999000999001"
                     /psig="0.999000999001"
                     /xcortree=1159
                     /SigmaFactorBS="atattcagctcagtcctttttgatgcgtctttcccgCACATA
                     actcgtctcattcccGCATATGGTTAAGAATAAAgaatctatgcaaagggggaggagc
                     c"
                     /listShort="yhaL"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    994291..994309
                     /Source="Nicolas_upshift_promotors"
                     /id="U792"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.999000999001"
                     /psig="0.999000999001"
                     /xcortree=1159
                     /SigmaFactorBS="atattcagctcagtcctttttgatgcgtctttcccgCACATA
                     actcgtctcattcccGCATATGGTTAAGAATAAAgaatctatgcaaagggggaggagc
                     c"
                     /listShort="yhaL"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        994294
                     /Source="Nicolas_upshifts"
                     /id="U792"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.999000999001"
                     /psig="0.999000999001"
                     /xcortree=1159
                     /SigmaFactorBS="atattcagctcagtcctttttgatgcgtctttcccgCACATA
                     actcgtctcattcccGCATATGGTTAAGAATAAAgaatctatgcaaagggggaggagc
                     c"
                     /listShort="yhaL"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             994336..994548
                     /gene="yhaL"
                     /locus_tag="BSU_09940"
                     /old_locus_tag="BSU09940"
                     /function="16.8: Protect"
                     /function="16.5: Explore"
                     /experiment="publication(s) with functional evidences,
                     PMID:14523133"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 14523133; Product type
                     ph: phenotype"
                     /codon_start=1
                     /transl_table=11
                     /product="sporulation factor"
                     /protein_id="NP_388875.1"
                     /db_xref="EnsemblGenomes-Gn:BSU09940"
                     /db_xref="EnsemblGenomes-Tr:CAB12834"
                     /db_xref="GOA:O07520"
                     /db_xref="InterPro:IPR025428"
                     /db_xref="SubtiList:BG12988"
                     /db_xref="UniProtKB/Swiss-Prot:O07520"
                     /translation="MLFFPWWVYLCIVGIIFSAYKLVAAAKEEEKVDQAFIEKEGQIY
                     MERMEKERERRSSQQHEEENQNHSIA*"
                     /label="yhaL CDS"
     gene            994336..994548
                     /gene="yhaL"
                     /locus_tag="BSU_09940"
                     /old_locus_tag="BSU09940"
                     /label="yhaL gene"
     downshifts      994541
                     /Source="Nicolas_upshifts"
                     /id="D533"
                     /incds=0
                     /nref=8
                     /ntot=158
                     /MaxReadThrough="2.03283"
                     /MaxDrop="6.60832"
                     /score="62.1892984"
                     /energy="-22"
                     /TU="NA"
                     /idTUdmin="U792"
                     /TUdmin=5
                     /isTUend="TRUE"
                     /label="downshifts"
     downshifts      complement(994579)
                     /Source="Nicolas_upshifts"
                     /id="D534"
                     /incds=0
                     /nref=97
                     /ntot=260
                     /MaxReadThrough="0.90997"
                     /MaxDrop="9.00938"
                     /score="52.3375501"
                     /energy="-22"
                     /TU="NA"
                     /idTUdmin="U793"
                     /TUdmin=11
                     /isTUend="TRUE"
                     /label="downshifts"
     CDS             complement(994589..995467)
                     /gene="prsA"
                     /locus_tag="BSU_09950"
                     /old_locus_tag="BSU09950"
                     /function="16.6: Maintain"
                     /experiment="publication(s) with functional evidences,
                     PMID:12634326, 12682299, 14976191, 16516208, 25525259,
                     26711778"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 12634326, 12682299,
                     14976191, 16516208, 25525259, 26711778; Product type lp :
                     lipoprotein"
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone lipoprotein"
                     /protein_id="NP_388876.1"
                     /db_xref="EnsemblGenomes-Gn:BSU09950"
                     /db_xref="EnsemblGenomes-Tr:CAB12835"
                     /db_xref="GOA:P24327"
                     /db_xref="InterPro:IPR000297"
                     /db_xref="InterPro:IPR008880"
                     /db_xref="InterPro:IPR023058"
                     /db_xref="InterPro:IPR023059"
                     /db_xref="InterPro:IPR027304"
                     /db_xref="PDB:1ZK6"
                     /db_xref="PDB:4WO7"
                     /db_xref="SubtiList:BG10464"
                     /db_xref="UniProtKB/Swiss-Prot:P24327"
                     /translation="MKKIAIAAITATSILALSACSSGDKEVIAKTDAGDVTKGELYTN
                     MKKTAGASVLTQLVQEKVLDKKYKVSDKEIDNKLKEYKTQLGDQYTALEKQYGKDYLK
                     EQVKYELLTQKAAKDNIKVTDADIKEYWEGLKGKIRASHILVADKKTAEEVEKKLKKG
                     EKFEDLAKEYSTDSSASKGGDLGWFAKEGQMDETFSKAAFKLKTGEVSDPVKTQYGYH
                     IIKKTEERGKYDDMKKELKSEVLEQKLNDNAAVQEAVQKVMKKADIEVKDKDLKDTFN
                     TSSTSNSTSSSSSNSK*"
                     /label="prsA CDS"
     gene            complement(994589..995467)
                     /gene="prsA"
                     /locus_tag="BSU_09950"
                     /old_locus_tag="BSU09950"
                     /label="prsA gene"
     downshifts      complement(994777)
                     /Source="Nicolas_upshifts"
                     /id="D535"
                     /incds=1
                     /nref=10
                     /ntot=127
                     /MaxReadThrough="7.54458"
                     /MaxDrop="3.5906"
                     /score="52.3375501"
                     /energy="-22"
                     /TU="U793"
                     /idTUdmin="U793"
                     /TUdmin="-187"
                     /isTUend="FALSE"
                     /label="downshifts"
     promotor_-10    complement(995505..995524)
                     /Source="Nicolas_upshift_promotors"
                     /id="U793"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.565434565434565"
                     /psig="0.996003996003996"
                     /xcortree=1995
                     /SigmaFactorBS="gtcatcagcaaaagtttgactagacgaatgccctttatttaa
                     aaTCTTTTTAcagaaagccacaaTATGTTATGATACGCATAGGtaatttaatttggaa
                     t"
                     /listShort="prsA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(995529)
                     /Source="Nicolas_upshifts"
                     /id="U793"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.565434565434565"
                     /psig="0.996003996003996"
                     /xcortree=1995
                     /SigmaFactorBS="gtcatcagcaaaagtttgactagacgaatgccctttatttaa
                     aaTCTTTTTAcagaaagccacaaTATGTTATGATACGCATAGGtaatttaatttggaa
                     t"
                     /listShort="prsA"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(995538..995545)
                     /Source="Nicolas_upshift_promotors"
                     /id="U793"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.565434565434565"
                     /psig="0.996003996003996"
                     /xcortree=1995
                     /SigmaFactorBS="gtcatcagcaaaagtttgactagacgaatgccctttatttaa
                     aaTCTTTTTAcagaaagccacaaTATGTTATGATACGCATAGGtaatttaatttggaa
                     t"
                     /listShort="prsA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-35    995565..995574
                     /Source="Nicolas_upshift_promotors"
                     /id="U794"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp="0.995004995004995"
                     /psig="0.995004995004995"
                     /xcortree=1349
                     /SigmaFactorBS="tgtggctttctgtaaaaagattttaaataaagggcattcGTC
                     TAGTCAAacttttgctgatGACATACTTATATATTGATCaagaaaaggaggtatgtaa
                     c"
                     /listShort="yhzE, S347, S349"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     upshifts        995586
                     /Source="Nicolas_upshifts"
                     /id="U794"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp="0.995004995004995"
                     /psig="0.995004995004995"
                     /xcortree=1349
                     /SigmaFactorBS="tgtggctttctgtaaaaagattttaaataaagggcattcGTC
                     TAGTCAAacttttgctgatGACATACTTATATATTGATCaagaaaaggaggtatgtaa
                     c"
                     /listShort="yhzE, S347, S349"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-10    995587..995606
                     /Source="Nicolas_upshift_promotors"
                     /id="U794"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp="0.995004995004995"
                     /psig="0.995004995004995"
                     /xcortree=1349
                     /SigmaFactorBS="tgtggctttctgtaaaaagattttaaataaagggcattcGTC
                     TAGTCAAacttttgctgatGACATACTTATATATTGATCaagaaaaggaggtatgtaa
                     c"
                     /listShort="yhzE, S347, S349"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     promotor_-10    complement(995623..995637)
                     /Source="Nicolas_upshift_promotors"
                     /id="U795"
                     /multdbtbs="-"
                     /comp="M15"
                     /sig="Sig-"
                     /pcomp=1
                     /psig=0
                     /xcortree=700
                     /SigmaFactorBS="taagcaaaatgaacagtactacgagcaacgcgaaTCCGTtag
                     agtatCCTCCGCTCATGTTAcatacctccttttcttgatcaatatataagtatgtcat
                     c"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(995624)
                     /Source="Nicolas_upshifts"
                     /id="U795"
                     /multdbtbs="-"
                     /comp="M15"
                     /sig="Sig-"
                     /pcomp=1
                     /psig=0
                     /xcortree=700
                     /SigmaFactorBS="taagcaaaatgaacagtactacgagcaacgcgaaTCCGTtag
                     agtatCCTCCGCTCATGTTAcatacctccttttcttgatcaatatataagtatgtcat
                     c"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             995627..995713
                     /gene="sscA"
                     /locus_tag="BSU_09958"
                     /old_locus_tag="BSU09958"
                     /function="15.7: Sporulation and germination"
                     /experiment="publication(s) with functional evidences,
                     PMID:20156992, 21670523"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 20156992, 21670523;
                     Product type ph: phenotype"
                     /codon_start=1
                     /transl_table=11
                     /product="spore assembly and germination protein"
                     /protein_id="YP_003097699.1"
                     /db_xref="EnsemblGenomes-Gn:BSU09958"
                     /db_xref="EnsemblGenomes-Tr:CAX52587"
                     /db_xref="GOA:C0H3Y2"
                     /db_xref="InterPro:IPR010070"
                     /db_xref="UniProtKB/Swiss-Prot:C0H3Y2"
                     /translation="MSGGYSNGFALLVVLFILLIIVGAAYIY*"
                     /label="sscA CDS"
     gene            995627..995713
                     /gene="sscA"
                     /locus_tag="BSU_09958"
                     /old_locus_tag="BSU09958"
                     /label="sscA gene"
     promotor_-35    complement(995646..995650)
                     /Source="Nicolas_upshift_promotors"
                     /id="U795"
                     /multdbtbs="-"
                     /comp="M15"
                     /sig="Sig-"
                     /pcomp=1
                     /psig=0
                     /xcortree=700
                     /SigmaFactorBS="taagcaaaatgaacagtactacgagcaacgcgaaTCCGTtag
                     agtatCCTCCGCTCATGTTAcatacctccttttcttgatcaatatataagtatgtcat
                     c"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     S_feature       995714..995965
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1071489_1071740"
                     /HighExp="S8, S7, S6, BT, G/S, B36, Pyr, S5, B60, Glucon"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba=1
                     /TUshortSig="SigK"
                     /TUshortPSig="0.995"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S347"
     CDS             995838..995924
                     /gene="sscB"
                     /locus_tag="BSU_09959"
                     /old_locus_tag="BSU09959"
                     /function="15.7: Sporulation and germination"
                     /experiment="publication(s) with functional evidences,
                     PMID:21670523"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 21670523; Product type f:
                     factor"
                     /codon_start=1
                     /transl_table=11
                     /product="spore and germination protein"
                     /protein_id="YP_009513948.1"
                     /db_xref="EnsemblGenomes-Gn:BSU09959"
                     /db_xref="EnsemblGenomes-Tr:CCQ48595"
                     /db_xref="GOA:L8EBJ6"
                     /db_xref="InterPro:IPR010070"
                     /db_xref="UniProtKB/TrEMBL:L8EBJ6"
                     /translation="MGEVFAGGFALLVVLFILLIIIGASWLY*"
                     /label="sscB CDS"
     gene            995838..995924
                     /gene="sscB"
                     /locus_tag="BSU_09959"
                     /old_locus_tag="BSU09959"
                     /label="sscB gene"
     downshifts      995922
                     /Source="Nicolas_upshifts"
                     /id="D536"
                     /incds=0
                     /nref=28
                     /ntot=50
                     /MaxReadThrough="4.67734"
                     /MaxDrop="4.7906"
                     /score="14.3797211"
                     /energy="-17.6"
                     /TU="U794"
                     /idTUdmin="U794"
                     /TUdmin="-506"
                     /isTUend="FALSE"
                     /label="downshifts"
     S_feature       complement(995934..996196)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1071709_1071971_c"
                     /HighExp="LBGtran, LBGstat, LPhT, LBGexp, HPh, dia15,
                     T0.30H, dia0, G180, Lbexp"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA, SigA"
                     /TUshortPSig="0.999, 0.995"
                     /TUlongSig="SigA"
                     /TUlongPSig="0.989"
                     /label="S348"
     S_feature       995967..996450
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1071742_1072225"
                     /HighExp="S8, S6, S7, BT, C30, S5, Pyr, Glucon, G/S, C90"
                     /AntisenseName="yhaJ"
                     /AntisenseCor="-0.22462434208606599"
                     /AntisenseRegPval="-3.7"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigK"
                     /TUshortPSig="0.995"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S349"
     downshifts      complement(995977)
                     /Source="Nicolas_upshifts"
                     /id="D537"
                     /incds=0
                     /nref=153
                     /ntot=265
                     /MaxReadThrough="1.32339"
                     /MaxDrop="6.55635"
                     /score="34.7913848"
                     /energy="-17.6"
                     /TU="NA"
                     /idTUdmin="U796"
                     /TUdmin="-1"
                     /isTUend="TRUE"
                     /label="downshifts"
     promotor_-10    complement(996189..996208)
                     /Source="Nicolas_upshift_promotors"
                     /id="U796"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.58041958041958"
                     /psig="0.999000999001"
                     /xcortree=2759
                     /SigmaFactorBS="gtgctggtggcgatttttcaatttgcattCTATCTtttttaa
                     taaataTTTGGTAATGTAATATGGGAcagttcagagagagggggaatctcccatcatt
                     t"
                     /listShort="S348"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(996196)
                     /Source="Nicolas_upshifts"
                     /id="U796"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.58041958041958"
                     /psig="0.999000999001"
                     /xcortree=2759
                     /SigmaFactorBS="gtgctggtggcgatttttcaatttgcattCTATCTtttttaa
                     taaataTTTGGTAATGTAATATGGGAcagttcagagagagggggaatctcccatcatt
                     t"
                     /listShort="S348"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     S_feature       complement(996198..996266)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1071973_1072041_c"
                     /HighExp="Paraq, G180, C30, LBGexp, Oxctl, G135, Lbexp,
                     Heat, G150, BMM"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="0.29568499999999998"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.995"
                     /TUlongSig="SigA"
                     /TUlongPSig="0.989"
                     /label="S350"
     promotor_-35    complement(996222..996227)
                     /Source="Nicolas_upshift_promotors"
                     /id="U796"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.58041958041958"
                     /psig="0.999000999001"
                     /xcortree=2759
                     /SigmaFactorBS="gtgctggtggcgatttttcaatttgcattCTATCTtttttaa
                     taaataTTTGGTAATGTAATATGGGAcagttcagagagagggggaatctcccatcatt
                     t"
                     /listShort="S348"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             complement(996267..996785)
                     /gene="yhaJ"
                     /locus_tag="BSU_09965"
                     /old_locus_tag="BSU09965"
                     /function="16.5: Explore"
                     /function="16.8: Protect"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 16845009, 21670523,
                     25651892; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative membrane enzyme"
                     /protein_id="NP_388878.2"
                     /db_xref="EnsemblGenomes-Gn:BSU09965"
                     /db_xref="EnsemblGenomes-Tr:CAB12837"
                     /db_xref="GOA:O07518"
                     /db_xref="InterPro:IPR021683"
                     /db_xref="SubtiList:BG12986"
                     /db_xref="UniProtKB/Swiss-Prot:O07518"
                     /translation="MNCWKTINLMKDYGAVRIILTAVCFMILVFISTFLAFELLRPGT
                     SLSDEYVSLFGGLLVVILFVHKVIHVLPIICKKRKIEKKFYILRMRTWKRIPKTTMLI
                     SLVSPFLLITPVLFYAALAFPNHAHYFCMISGIHAGYCLPDFLLALKLIKAPKTAFID
                     QEADGLDILVEK*"
                     /label="yhaJ CDS"
     gene            complement(996267..996785)
                     /gene="yhaJ"
                     /locus_tag="BSU_09965"
                     /old_locus_tag="BSU09965"
                     /label="yhaJ gene"
     promotor_-35    996572..996580
                     /Source="Nicolas_upshift_promotors"
                     /id="U797"
                     /multdbtbs="-"
                     /comp="M1"
                     /sig="SigH"
                     /pcomp="0.999000999001"
                     /psig="0.999000999001"
                     /xcortree=540
                     /SigmaFactorBS="ctatttttctttttttgcagatgattgGCAGGACATggatga
                     ctttaTGTACAAATAAAATAACGAcgagcaaaccgccgaataaagatacatattcatc
                     g"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    996592..996610
                     /Source="Nicolas_upshift_promotors"
                     /id="U797"
                     /multdbtbs="-"
                     /comp="M1"
                     /sig="SigH"
                     /pcomp="0.999000999001"
                     /psig="0.999000999001"
                     /xcortree=540
                     /SigmaFactorBS="ctatttttctttttttgcagatgattgGCAGGACATggatga
                     ctttaTGTACAAATAAAATAACGAcgagcaaaccgccgaataaagatacatattcatc
                     g"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        996605
                     /Source="Nicolas_upshifts"
                     /id="U797"
                     /multdbtbs="-"
                     /comp="M1"
                     /sig="SigH"
                     /pcomp="0.999000999001"
                     /psig="0.999000999001"
                     /xcortree=540
                     /SigmaFactorBS="ctatttttctttttttgcagatgattgGCAGGACATggatga
                     ctttaTGTACAAATAAAATAACGAcgagcaaaccgccgaataaagatacatattcatc
                     g"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-10    complement(996816..996835)
                     /Source="Nicolas_upshift_promotors"
                     /id="U798"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.44955044955045"
                     /psig="0.995004995004995"
                     /xcortree=2615
                     /SigmaFactorBS="aaaaatacctgccggatgatattttttcttaaaaaagCATTG
                     ATtttttctcttgggagGAGTAAATTATTTTGAGATTctattcaagatgtatggaagg
                     a"
                     /listShort="yhaJ, S350, S348"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(996834)
                     /Source="Nicolas_upshifts"
                     /id="U798"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.44955044955045"
                     /psig="0.995004995004995"
                     /xcortree=2615
                     /SigmaFactorBS="aaaaatacctgccggatgatattttttcttaaaaaagCATTG
                     ATtttttctcttgggagGAGTAAATTATTTTGAGATTctattcaagatgtatggaagg
                     a"
                     /listShort="yhaJ, S350, S348"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(996851..996857)
                     /Source="Nicolas_upshift_promotors"
                     /id="U798"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.44955044955045"
                     /psig="0.995004995004995"
                     /xcortree=2615
                     /SigmaFactorBS="aaaaatacctgccggatgatattttttcttaaaaaagCATTG
                     ATtttttctcttgggagGAGTAAATTATTTTGAGATTctattcaagatgtatggaagg
                     a"
                     /listShort="yhaJ, S350, S348"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-35    996934..996937
                     /Source="Nicolas_upshift_promotors"
                     /id="U799"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.671328671328671"
                     /psig="0.999000999001"
                     /xcortree=2221
                     /SigmaFactorBS="gaaacaagcaaacaaactgcgaaatatggggttagaaCTTTc
                     ttctcagtgaattATCAGCTAAAATAAGATTAAagatagaaagaagtggtgtggatgg
                     a"
                     /listShort="yhaI, S352"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    996952..996971
                     /Source="Nicolas_upshift_promotors"
                     /id="U799"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.671328671328671"
                     /psig="0.999000999001"
                     /xcortree=2221
                     /SigmaFactorBS="gaaacaagcaaacaaactgcgaaatatggggttagaaCTTTc
                     ttctcagtgaattATCAGCTAAAATAAGATTAAagatagaaagaagtggtgtggatgg
                     a"
                     /listShort="yhaI, S352"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        996957
                     /Source="Nicolas_upshifts"
                     /id="U799"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.671328671328671"
                     /psig="0.999000999001"
                     /xcortree=2221
                     /SigmaFactorBS="gaaacaagcaaacaaactgcgaaatatggggttagaaCTTTc
                     ttctcagtgaattATCAGCTAAAATAAGATTAAagatagaaagaagtggtgtggatgg
                     a"
                     /listShort="yhaI, S352"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             996993..997334
                     /gene="yhaI"
                     /locus_tag="BSU_09980"
                     /old_locus_tag="BSU09980"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved protein of unknown function"
                     /protein_id="NP_388879.1"
                     /db_xref="EnsemblGenomes-Gn:BSU09980"
                     /db_xref="EnsemblGenomes-Tr:CAB12838"
                     /db_xref="InterPro:IPR015058"
                     /db_xref="InterPro:IPR035945"
                     /db_xref="PDB:1SED"
                     /db_xref="SubtiList:BG12985"
                     /db_xref="UniProtKB/Swiss-Prot:O07517"
                     /translation="MDSMDHRIERLEYYIQLLVKTVDMDRYPFYALLIDKGLSKEEGE
                     AVMRICDELSEELATQKAQGFVTFDKLLALFAGQLNEKLDVHETIFALYEQGLYQELM
                     EVFIDIMKHFD*"
                     /label="yhaI CDS"
     gene            996993..997334
                     /gene="yhaI"
                     /locus_tag="BSU_09980"
                     /old_locus_tag="BSU09980"
                     /label="yhaI gene"
     S_feature       complement(997188..997330)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1072963_1073105_c"
                     /HighExp="BC, S1, Sw, S2, S3, S8, S5, S4, S6, S7"
                     /AntisenseName="yhaI"
                     /AntisenseCor="5.4889858269512502E-2"
                     /AntisenseRegPval="-0.4"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.989"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S351"
     downshifts      complement(997231)
                     /Source="Nicolas_upshifts"
                     /id="D538"
                     /incds=1
                     /nref=39
                     /ntot=209
                     /MaxReadThrough="2.89899"
                     /MaxDrop="4.77791"
                     /score="-6.0983333"
                     /energy="-12.3"
                     /TU="U801"
                     /idTUdmin="U801"
                     /TUdmin="-374"
                     /isTUend="FALSE"
                     /label="downshifts"
     CDS             complement(997331..997942)
                     /gene="scoC"
                     /locus_tag="BSU_09990"
                     /old_locus_tag="BSU09990"
                     /function="16.3: Control"
                     /experiment="publication(s) with functional evidences,
                     PMID:14629015, 15126467, 16321961, 16923912, 19801406,
                     20382764, 23660663, 25966844, 26473603, 26728191,
                     22720735"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 14629015, 15126467,
                     16321961, 16923912, 19801406, 20382764, 23660663,
                     25966844, 26473603, 26728191, 22720735; Product type r :
                     regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator of extracellular
                     protease production, sporulation and bacilysin production
                     (MarR family)"
                     /protein_id="NP_388880.1"
                     /db_xref="EnsemblGenomes-Gn:BSU09990"
                     /db_xref="EnsemblGenomes-Tr:CAB12839"
                     /db_xref="GOA:P11065"
                     /db_xref="InterPro:IPR000835"
                     /db_xref="InterPro:IPR023187"
                     /db_xref="InterPro:IPR023488"
                     /db_xref="InterPro:IPR036388"
                     /db_xref="InterPro:IPR036390"
                     /db_xref="PDB:2FXA"
                     /db_xref="SubtiList:BG10659"
                     /db_xref="UniProtKB/Swiss-Prot:P11065"
                     /translation="MNRVEPPYDVKEALVFTQKMAQLSKALWKSIEKDWQQWLKPYDL
                     NINEHHILWIAYQLNGASISEIAKFGVMHVSTAFNFSKKLEERGYLRFSKRLNDKRNT
                     YVQLTEEGTEVFWSLLEEFDPTRNAVFKGSQPLYHLFGKFPEVAEMMCMIRHIYGDDF
                     MEIFETSLTNIDNDFESVNGKLKKKAKDSAADEPAEELEPVNS*"
                     /label="scoC CDS"
     gene            complement(997331..997942)
                     /gene="scoC"
                     /locus_tag="BSU_09990"
                     /old_locus_tag="BSU09990"
                     /label="scoC gene"
     S_feature       997335..998100
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1073110_1073875"
                     /HighExp="Lbstat, Etha, T0.30H, Gly, M0t90, M40t90,
                     M40t45, M0t45, H2O2, dia15"
                     /AntisenseName="scoC"
                     /AntisenseCor="-0.46322626361720198"
                     /AntisenseRegPval="-15"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.999"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S352"
     downshifts      complement(997407)
                     /Source="Nicolas_upshifts"
                     /id="D539"
                     /incds=1
                     /nref=1
                     /ntot=81
                     /MaxReadThrough="5.81117"
                     /MaxDrop="2.1632"
                     /score="-6.0983333"
                     /energy="-12.3"
                     /TU="U801"
                     /idTUdmin="U801"
                     /TUdmin="-550"
                     /isTUend="FALSE"
                     /label="downshifts"
     promotor_-35    997938..997942
                     /Source="Nicolas_upshift_promotors"
                     /id="U800"
                     /multdbtbs="-"
                     /comp="M15"
                     /sig="Sig-"
                     /pcomp="0.632367632367632"
                     /psig="0.177822177822178"
                     /xcortree=3100
                     /SigmaFactorBS="agagcttctttcacatcatagggcggttccactcgaTTCATt
                     acgtcaCCTGCTTCTCTTTTtctttttctctattatgccaataaaataaagattaata
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    997950..997963
                     /Source="Nicolas_upshift_promotors"
                     /id="U800"
                     /multdbtbs="-"
                     /comp="M15"
                     /sig="Sig-"
                     /pcomp="0.632367632367632"
                     /psig="0.177822177822178"
                     /xcortree=3100
                     /SigmaFactorBS="agagcttctttcacatcatagggcggttccactcgaTTCATt
                     acgtcaCCTGCTTCTCTTTTtctttttctctattatgccaataaaataaagattaata
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        997962
                     /Source="Nicolas_upshifts"
                     /id="U800"
                     /multdbtbs="-"
                     /comp="M15"
                     /sig="Sig-"
                     /pcomp="0.632367632367632"
                     /psig="0.177822177822178"
                     /xcortree=3100
                     /SigmaFactorBS="agagcttctttcacatcatagggcggttccactcgaTTCATt
                     acgtcaCCTGCTTCTCTTTTtctttttctctattatgccaataaaataaagattaata
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-10    complement(997967..997986)
                     /Source="Nicolas_upshift_promotors"
                     /id="U801"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.656343656343656"
                     /psig="0.98901098901099"
                     /xcortree=2944
                     /SigmaFactorBS="cgtcgcaatggtttgtgaatttattaaaaaattcttacattt
                     tcatCTTTattaatctttatttTATTGGCATAATAGAGAAAAagaaaaagagaagcag
                     g"
                     /listShort="scoC, S351"
                     /listLong="yhaJ, S350, S348"
                     /label="promotor_-10"
     upshifts        complement(997990)
                     /Source="Nicolas_upshifts"
                     /id="U801"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.656343656343656"
                     /psig="0.98901098901099"
                     /xcortree=2944
                     /SigmaFactorBS="cgtcgcaatggtttgtgaatttattaaaaaattcttacattt
                     tcatCTTTattaatctttatttTATTGGCATAATAGAGAAAAagaaaaagagaagcag
                     g"
                     /listShort="scoC, S351"
                     /listLong="yhaJ, S350, S348"
                     /label="upshifts"
     promotor_-35    complement(998001..998004)
                     /Source="Nicolas_upshift_promotors"
                     /id="U801"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.656343656343656"
                     /psig="0.98901098901099"
                     /xcortree=2944
                     /SigmaFactorBS="cgtcgcaatggtttgtgaatttattaaaaaattcttacattt
                     tcatCTTTattaatctttatttTATTGGCATAATAGAGAAAAagaaaaagagaagcag
                     g"
                     /listShort="scoC, S351"
                     /listLong="yhaJ, S350, S348"
                     /label="promotor_-35"
     downshifts      998057
                     /Source="Nicolas_upshifts"
                     /id="D540"
                     /incds=0
                     /nref=1
                     /ntot=124
                     /MaxReadThrough="3.007"
                     /MaxDrop="2.86547"
                     /score="17.8486533"
                     /energy="-7.1"
                     /TU="U799,U800"
                     /idTUdmin="U799"
                     /TUdmin="-22"
                     /isTUend="TRUE"
                     /label="downshifts"
     CDS             complement(998120..998476)
                     /gene="yhaH"
                     /locus_tag="BSU_10000"
                     /old_locus_tag="BSU10000"
                     /function="16.8: Protect"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 11429463; Product type
                     m: membrane component"
                     /codon_start=1
                     /transl_table=11
                     /product="putative membrane protein; acid tolerance
                     protein"
                     /protein_id="NP_388881.1"
                     /db_xref="EnsemblGenomes-Gn:BSU10000"
                     /db_xref="EnsemblGenomes-Tr:CAB12840"
                     /db_xref="GOA:O07516"
                     /db_xref="InterPro:IPR024623"
                     /db_xref="InterPro:IPR036191"
                     /db_xref="SubtiList:BG12984"
                     /db_xref="UniProtKB/Swiss-Prot:O07516"
                     /translation="MASGRSLLTGLFVGGIIGGAAVLLTAPSSGKQLREKMKTNYDSF
                     EETIKRLKSDGLALKDQLIKAAKESTDVIKDVGGELQTSIKKWQEEIKPHQQDLQKEI
                     ADIEEKIRQLEKTLQN*"
                     /label="yhaH CDS"
     gene            complement(998120..998476)
                     /gene="yhaH"
                     /locus_tag="BSU_10000"
                     /old_locus_tag="BSU10000"
                     /label="yhaH gene"
     downshifts      complement(998124)
                     /Source="Nicolas_upshifts"
                     /id="D541"
                     /incds=0
                     /nref=254
                     /ntot=287
                     /MaxReadThrough="1.65317"
                     /MaxDrop="7.37381"
                     /score="10.8990112"
                     /energy="-7.9"
                     /TU="NA"
                     /idTUdmin="U804"
                     /TUdmin=9
                     /isTUend="TRUE"
                     /label="downshifts"
     promotor_-35    998553..998558
                     /Source="Nicolas_upshift_promotors"
                     /id="U803"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.998001998001998"
                     /psig="0.998001998001998"
                     /xcortree=1168
                     /SigmaFactorBS="ttcagcatttttcatttttgttgaaagcctgaacttctaTAC
                     ATAgcttgctttattttaGCATATTTTTTAAGTGAAAaggagggagaaggttgtctgt
                     c"
                     /listShort="yhzF, S354"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     misc_feature    complement(998559..998578)
                     /Source="Nicolas_upshift_promotors"
                     /id="U802"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.998001998001998"
                     /psig=1
                     /xcortree=1914
                     /SigmaFactorBS="aggataatacaatcaaaaagacagacaaccttctccctcctt
                     ttcacttaaaaaaTATGCTAAAATAAAGCAAGCtatgtatagaagttcaggctttcaa
                     c"
                     /listShort="yhaH"
                     /GFF_Attribute="listLong"
                     /label="promotor_single_box"
                     /note="Geneious type: promotor_single_box"
     upshifts        complement(998573)
                     /Source="Nicolas_upshifts"
                     /id="U802"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.998001998001998"
                     /psig=1
                     /xcortree=1914
                     /SigmaFactorBS="aggataatacaatcaaaaagacagacaaccttctccctcctt
                     ttcacttaaaaaaTATGCTAAAATAAAGCAAGCtatgtatagaagttcaggctttcaa
                     c"
                     /listShort="yhaH"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-10    998574..998592
                     /Source="Nicolas_upshift_promotors"
                     /id="U803"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.998001998001998"
                     /psig="0.998001998001998"
                     /xcortree=1168
                     /SigmaFactorBS="ttcagcatttttcatttttgttgaaagcctgaacttctaTAC
                     ATAgcttgctttattttaGCATATTTTTTAAGTGAAAaggagggagaaggttgtctgt
                     c"
                     /listShort="yhzF, S354"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        998574
                     /Source="Nicolas_upshifts"
                     /id="U803"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.998001998001998"
                     /psig="0.998001998001998"
                     /xcortree=1168
                     /SigmaFactorBS="ttcagcatttttcatttttgttgaaagcctgaacttctaTAC
                     ATAgcttgctttattttaGCATATTTTTTAAGTGAAAaggagggagaaggttgtctgt
                     c"
                     /listShort="yhzF, S354"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     S_feature       complement(998575..998838)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1074350_1074613_c"
                     /HighExp="Etha, Salt, HiTm, Heat, Diami, Sw, Gly, S1, MG
                     10, MG 60"
                     /AntisenseName="yhzF"
                     /AntisenseCor="-0.69425315975357205"
                     /AntisenseRegPval="-39.299999999999997"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA, SigA, SigA"
                     /TUshortPSig="0.969, 0.962, 1"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S353"
     CDS             998606..998797
                     /gene="yhzF"
                     /locus_tag="BSU_10009"
                     /old_locus_tag="BSU10009"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms"
                     /codon_start=1
                     /transl_table=11
                     /product="membrane protein of unknown function"
                     /protein_id="YP_003097700.1"
                     /db_xref="EnsemblGenomes-Gn:BSU10009"
                     /db_xref="EnsemblGenomes-Tr:CAX52588"
                     /db_xref="GOA:C0H3Y3"
                     /db_xref="UniProtKB/Swiss-Prot:C0H3Y3"
                     /translation="MSVFLIVLSCITLAFASGAVYYIKLLSQAASYPPKRVIRQKALV
                     CSTGTAFTLCLIFFTKLLA*"
                     /label="yhzF CDS"
     gene            998606..998797
                     /gene="yhzF"
                     /locus_tag="BSU_10009"
                     /old_locus_tag="BSU10009"
                     /label="yhzF gene"
     S_feature       998798..1000233
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1074573_1076008"
                     /HighExp="S3, S8, S4, S6, S7, T5.0H, C30, S5, T4.0H,
                     T3.30H"
                     /AntisenseName="trpP"
                     /AntisenseCor="-0.20038256384636899"
                     /AntisenseRegPval="-3"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigEF"
                     /TUshortPSig="0.998"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S354"
     CDS             complement(998871..999389)
                     /gene="trpP"
                     /locus_tag="BSU_10010"
                     /old_locus_tag="BSU10010"
                     /function="16.1: Circulate"
                     /experiment="publication(s) with functional evidences,
                     PMID:10735881, 14702295, 15849754, 16850406, 16879415,
                     17114263"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 10735881, 14702295,
                     15849754, 16850406, 16879415, 17114263; Product type t :
                     transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="tryptophan transporter or sensor"
                     /protein_id="NP_388882.2"
                     /db_xref="EnsemblGenomes-Gn:BSU10010"
                     /db_xref="EnsemblGenomes-Tr:CAB12841"
                     /db_xref="GOA:O07515"
                     /db_xref="InterPro:IPR031360"
                     /db_xref="SubtiList:BG12983"
                     /db_xref="UniProtKB/Swiss-Prot:O07515"
                     /translation="MKTKELVIMALFAAIGAALHSIIPPFLGGMKPDMMLIMMFMGIL
                     LFPRVQNVLVIGIVTGIISALTTAFPAGQIPNIIDKPVSAFLFFSLFLLFRKSRKTGA
                     AAVLTVIGTILSGIVFLSSALLIVGLPGGFAALFAAVVLPAAVLNTISMIIIYPIVQT
                     ILRRSSFMEAAK*"
                     /label="trpP CDS"
     gene            complement(998871..999389)
                     /gene="trpP"
                     /locus_tag="BSU_10010"
                     /old_locus_tag="BSU10010"
                     /label="trpP gene"
     downshifts      complement(998883)
                     /Source="Nicolas_upshifts"
                     /id="D542"
                     /incds=0
                     /nref=105
                     /ntot=253
                     /MaxReadThrough="6.00956"
                     /MaxDrop="4.62812"
                     /score="24.5949542"
                     /energy="-12.8"
                     /TU="U804,U805,U806"
                     /idTUdmin="U804"
                     /TUdmin="-750"
                     /isTUend="FALSE"
                     /label="downshifts"
     S_feature       complement(999390..999477)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1075165_1075252_c"
                     /HighExp="C90, B60, S1, GM 15, MG 45, MG-0.2, Etha,
                     Lbtran, MG 25, MG t5"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA, SigA, SigA"
                     /TUshortPSig="0.969, 0.962, 1"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S355"
     promotor_-10    complement(999469..999488)
                     /Source="Nicolas_upshift_promotors"
                     /id="U804"
                     /multdbtbs="SigA"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.541458541458541"
                     /psig="0.969030969030969"
                     /xcortree=591
                     /SigmaFactorBS="aaattccagcaggaaaatgagtaaaaagTCTGGCTAtgcaaa
                     ccgtccgTTTGGTATACTGTTTGCATAacacattctgtaaagccttcgcaataaatga
                     t"
                     /listShort="S355, trpP, S353, yhaH"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(999477)
                     /Source="Nicolas_upshifts"
                     /id="U804"
                     /multdbtbs="SigA"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.541458541458541"
                     /psig="0.969030969030969"
                     /xcortree=591
                     /SigmaFactorBS="aaattccagcaggaaaatgagtaaaaagTCTGGCTAtgcaaa
                     ccgtccgTTTGGTATACTGTTTGCATAacacattctgtaaagccttcgcaataaatga
                     t"
                     /listShort="S355, trpP, S353, yhaH"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(999502..999509)
                     /Source="Nicolas_upshift_promotors"
                     /id="U804"
                     /multdbtbs="SigA"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.541458541458541"
                     /psig="0.969030969030969"
                     /xcortree=591
                     /SigmaFactorBS="aaattccagcaggaaaatgagtaaaaagTCTGGCTAtgcaaa
                     ccgtccgTTTGGTATACTGTTTGCATAacacattctgtaaagccttcgcaataaatga
                     t"
                     /listShort="S355, trpP, S353, yhaH"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             complement(999514..1000593)
                     /gene="serC"
                     /locus_tag="BSU_10020"
                     /old_locus_tag="BSU10020"
                     /EC_number="2.6.1.52"
                     /function="16.2: Construct biomass (Anabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:4337849, 16233211"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 4337849, 16233211;
                     Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoserine aminotransferase"
                     /protein_id="NP_388883.1"
                     /db_xref="EnsemblGenomes-Gn:BSU10020"
                     /db_xref="EnsemblGenomes-Tr:CAB12842"
                     /db_xref="GOA:P80862"
                     /db_xref="InterPro:IPR000192"
                     /db_xref="InterPro:IPR015421"
                     /db_xref="InterPro:IPR015422"
                     /db_xref="InterPro:IPR015424"
                     /db_xref="InterPro:IPR020578"
                     /db_xref="InterPro:IPR022278"
                     /db_xref="SubtiList:BG12673"
                     /db_xref="UniProtKB/Swiss-Prot:P80862"
                     /translation="MERTTNFNAGPAALPLEVLQKAQKEFIDFNESGMSVMELSHRSK
                     EYEAVHQKAKSLLIELMGIPEDYDILFLQGGASLQFSMLPMNFLTPEKTAHFVMTGAW
                     SEKALAETKLFGNTSITATSETDNYSYIPEVDLTDVKDGAYLHITSNNTIFGTQWQEF
                     PNSPIPLVADMSSDILSRKIDVSKFDVIYGGAQKNLGPSGVTVVIMKKSWLQNENANV
                     PKILKYSTHVKADSLYNTPPTFAIYMLSLVLEWLKENGGVEAVEQRNEQKAQVLYSCI
                     DESNGFYKGHARKDSRSRMNVTFTLRDDELTKTFVQKAKDAKMIGLGGHRSVGGCRAS
                     IYNAVSLEDCEKLAAFMKKFQQENE*"
                     /label="serC CDS"
     gene            complement(999514..1000593)
                     /gene="serC"
                     /locus_tag="BSU_10020"
                     /old_locus_tag="BSU10020"
                     /label="serC gene"
     misc_feature    complement(1000632..1000651)
                     /Source="Nicolas_upshift_promotors"
                     /id="U805"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.772227772227772"
                     /psig="0.962037962037962"
                     /xcortree=3059
                     /SigmaFactorBS="atccgtcaatttcttttgataattctaattttttatcaaaaa
                     actgaattttTGTGATAGGATAATTGTATTattttatacattaacgtggaaaacaggg
                     a"
                     /listShort="serC, S355, trpP, S353, yhaH"
                     /GFF_Attribute="listLong"
                     /label="promotor_single_box"
                     /note="Geneious type: promotor_single_box"
     upshifts        complement(1000643)
                     /Source="Nicolas_upshifts"
                     /id="U805"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.772227772227772"
                     /psig="0.962037962037962"
                     /xcortree=3059
                     /SigmaFactorBS="atccgtcaatttcttttgataattctaattttttatcaaaaa
                     actgaattttTGTGATAGGATAATTGTATTattttatacattaacgtggaaaacaggg
                     a"
                     /listShort="serC, S355, trpP, S353, yhaH"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     S_feature       complement(1000645..1000726)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1076420_1076501_c"
                     /HighExp="Etha, dia15, H2O2, LBGtran, G135, G180, dia5,
                     G150, Lbexp, M0t45"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig=1
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S356"
     CDS             complement(1000740..1001177)
                     /gene="hinT"
                     /locus_tag="BSU_10030"
                     /old_locus_tag="BSU10030"
                     /EC_number="3.6.1.29"
                     /EC_number="3.6.1.-"
                     /function="16.3: Control"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 2a: Function from experimental evidences
                     in other organisms; PubMedId: 9579061, 15703176, 16934294,
                     17217311, 26181368, 28516732; Product type e : enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="promiscuous Hit-family phosphohydrolase,
                     adenosine phosphoramidase"
                     /protein_id="NP_388884.1"
                     /db_xref="EnsemblGenomes-Gn:BSU10030"
                     /db_xref="EnsemblGenomes-Tr:CAB12843"
                     /db_xref="GOA:O07513"
                     /db_xref="InterPro:IPR001310"
                     /db_xref="InterPro:IPR011146"
                     /db_xref="InterPro:IPR019808"
                     /db_xref="InterPro:IPR036265"
                     /db_xref="PDB:1Y23"
                     /db_xref="SubtiList:BG12607"
                     /db_xref="UniProtKB/Swiss-Prot:O07513"
                     /translation="MHCAENCIFCKIIAGDIPSAKVYEDEHVLAFLDISQVTKGHTLV
                     IPKTHIENVYEFTDELAKQYFHAVPKIARAIRDEFEPIGLNTLNNNGEKAGQSVFHYH
                     MHIIPRYGKGDGFGAVWKTHADDYKPEDLQNISSSIAKRLASS*"
                     /label="hinT CDS"
     gene            complement(1000740..1001177)
                     /gene="hinT"
                     /locus_tag="BSU_10030"
                     /old_locus_tag="BSU10030"
                     /label="hinT gene"
     downshifts      complement(1000771)
                     /Source="Nicolas_upshifts"
                     /id="D543"
                     /incds=0
                     /nref=187
                     /ntot=248
                     /MaxReadThrough="4.31506"
                     /MaxDrop="5.61862"
                     /score="-0.366845751"
                     /energy="-8.6"
                     /TU="U806"
                     /idTUdmin="U807"
                     /TUdmin=4
                     /isTUend="TRUE"
                     /label="downshifts"
     promotor_-10    complement(1001210..1001229)
                     /Source="Nicolas_upshift_promotors"
                     /id="U806"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.576423576423576"
                     /psig=1
                     /xcortree=2360
                     /SigmaFactorBS="tctgcattcagggtgaacgctcgccgttcatcctGTTTTCTA
                     ttttctgcatttcTGTGGTACGATGAATGTATAcatactaaacaatttcataaggagg
                     a"
                     /listShort="hinT, S356, serC, S355, trpP, S353, yhaH"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(1001224)
                     /Source="Nicolas_upshifts"
                     /id="U806"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.576423576423576"
                     /psig=1
                     /xcortree=2360
                     /SigmaFactorBS="tctgcattcagggtgaacgctcgccgttcatcctGTTTTCTA
                     ttttctgcatttcTGTGGTACGATGAATGTATAcatactaaacaatttcataaggagg
                     a"
                     /listShort="hinT, S356, serC, S355, trpP, S353, yhaH"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     downshifts      1001227
                     /Source="Nicolas_upshifts"
                     /id="D544"
                     /incds=0
                     /nref=1
                     /ntot=3
                     /MaxReadThrough="2.3752"
                     /MaxDrop="3.02008"
                     /score="-3.56654132"
                     /energy="-13.3"
                     /TU="NA"
                     /idTUdmin="U803"
                     /TUdmin=1034
                     /isTUend="FALSE"
                     /label="downshifts"
     promotor_-35    complement(1001243..1001250)
                     /Source="Nicolas_upshift_promotors"
                     /id="U806"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.576423576423576"
                     /psig=1
                     /xcortree=2360
                     /SigmaFactorBS="tctgcattcagggtgaacgctcgccgttcatcctGTTTTCTA
                     ttttctgcatttcTGTGGTACGATGAATGTATAcatactaaacaatttcataaggagg
                     a"
                     /listShort="hinT, S356, serC, S355, trpP, S353, yhaH"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     S_feature       complement(1001249..1001545)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1077024_1077320_c"
                     /HighExp="S7, S8, S6, S5, BT, ferm, nit, G/S, S4, Pyr"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigGF"
                     /TUshortPSig=1
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S357"
     downshifts      complement(1001292)
                     /Source="Nicolas_upshifts"
                     /id="D545"
                     /incds=0
                     /nref=40
                     /ntot=72
                     /MaxReadThrough="3.07347"
                     /MaxDrop="7.69075"
                     /score="9.88617558"
                     /energy="-14.2"
                     /TU="U807"
                     /idTUdmin="U807"
                     /TUdmin="-517"
                     /isTUend="FALSE"
                     /label="downshifts"
     promotor_-10    complement(1001543..1001554)
                     /Source="Nicolas_upshift_promotors"
                     /id="U807"
                     /multdbtbs="-"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp=1
                     /psig=1
                     /xcortree=832
                     /SigmaFactorBS="aaacaattcccttttaacaaatgatgaatttgctGTCATAAa
                     gagacagggttctGGACATCATAAAagttgtagaggaaaagcatatcaactgaaaaat
                     g"
                     /listShort="S357, hinT"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(1001549)
                     /Source="Nicolas_upshifts"
                     /id="U807"
                     /multdbtbs="-"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp=1
                     /psig=1
                     /xcortree=832
                     /SigmaFactorBS="aaacaattcccttttaacaaatgatgaatttgctGTCATAAa
                     gagacagggttctGGACATCATAAAagttgtagaggaaaagcatatcaactgaaaaat
                     g"
                     /listShort="S357, hinT"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(1001569..1001575)
                     /Source="Nicolas_upshift_promotors"
                     /id="U807"
                     /multdbtbs="-"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp=1
                     /psig=1
                     /xcortree=832
                     /SigmaFactorBS="aaacaattcccttttaacaaatgatgaatttgctGTCATAAa
                     gagacagggttctGGACATCATAAAagttgtagaggaaaagcatatcaactgaaaaat
                     g"
                     /listShort="S357, hinT"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-35    1001605..1001612
                     /Source="Nicolas_upshift_promotors"
                     /id="U808"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.553446553446553"
                     /psig=1
                     /xcortree=1921
                     /SigmaFactorBS="cagcaaattcatcatttgttaaaagggaatTGTTTCAAatca
                     ggccttgttTTTGGTACTATGAAGAAAAAcactataaggggagaaactatgtctctgc
                     t"
                     /listShort="ecsA, ecsB, ecsC"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    1001626..1001645
                     /Source="Nicolas_upshift_promotors"
                     /id="U808"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.553446553446553"
                     /psig=1
                     /xcortree=1921
                     /SigmaFactorBS="cagcaaattcatcatttgttaaaagggaatTGTTTCAAatca
                     ggccttgttTTTGGTACTATGAAGAAAAAcactataaggggagaaactatgtctctgc
                     t"
                     /listShort="ecsA, ecsB, ecsC"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        1001635
                     /Source="Nicolas_upshifts"
                     /id="U808"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.553446553446553"
                     /psig=1
                     /xcortree=1921
                     /SigmaFactorBS="cagcaaattcatcatttgttaaaagggaatTGTTTCAAatca
                     ggccttgttTTTGGTACTATGAAGAAAAAcactataaggggagaaactatgtctctgc
                     t"
                     /listShort="ecsA, ecsB, ecsC"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             1001665..1002408
                     /gene="ecsA"
                     /locus_tag="BSU_10040"
                     /old_locus_tag="BSU10040"
                     /function="16.1: Circulate"
                     /experiment="publication(s) with functional evidences,
                     PMID:8581172, 10027970, 11807061, 18599827, 26735940"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 8581172, 10027970,
                     11807061, 18599827, 26735940; Product type t :
                     transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter (ATP-binding protein)"
                     /protein_id="NP_388885.1"
                     /db_xref="EnsemblGenomes-Gn:BSU10040"
                     /db_xref="EnsemblGenomes-Tr:CAB12844"
                     /db_xref="GOA:P55339"
                     /db_xref="InterPro:IPR003439"
                     /db_xref="InterPro:IPR003593"
                     /db_xref="InterPro:IPR027417"
                     /db_xref="SubtiList:BG11516"
                     /db_xref="UniProtKB/Swiss-Prot:P55339"
                     /translation="MSLLSVKDLTGGYTRNPVLKNVSFTLEPNQIVGLIGLNGAGKST
                     TIRHIIGLMDPHKGSIELNGKTFAEDPEGYRSQFTYIPETPVLYEELTLMEHLELTAM
                     AYGLSKETMEKRLPPLLKEFRMEKRLKWFPAHFSKGMKQKVMIMCAFLAEPALYIIDE
                     PFLGLDPLAINALLERMNEAKKGGASVLMSTHILATAERYCDSFIILHNGEVRARGTL
                     SELREQFGMKDAALDDLYLELTKEDAGHE*"
                     /label="ecsA CDS"
     gene            1001665..1002408
                     /gene="ecsA"
                     /locus_tag="BSU_10040"
                     /old_locus_tag="BSU10040"
                     /label="ecsA gene"
     CDS             1002401..1003627
                     /gene="ecsB"
                     /locus_tag="BSU_10050"
                     /old_locus_tag="BSU10050"
                     /function="16.1: Circulate"
                     /experiment="publication(s) with functional evidences,
                     PMID:8581172, 10027970, 15175311, 15849754, 16850406,
                     18599827, 21665535, 26735940"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 8581172, 10027970,
                     15175311, 15849754, 16850406, 18599827, 21665535,
                     26735940; Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter (permease subunit)"
                     /protein_id="NP_388886.1"
                     /db_xref="EnsemblGenomes-Gn:BSU10050"
                     /db_xref="EnsemblGenomes-Tr:CAB12845"
                     /db_xref="GOA:P55340"
                     /db_xref="InterPro:IPR010288"
                     /db_xref="SubtiList:BG11517"
                     /db_xref="UniProtKB/Swiss-Prot:P55340"
                     /translation="MNNMLDIWQSRLQEHIKETRTYMKYMLNDHLVIVLIFFLAGAAS
                     WYSKWIRDIPAHFPSFWVMAVLFSLVLTSSYVRTLLKEADLVFLLPLEAKMEPYLKQA
                     FVYSYVSQLFPLIALSIVAMPLYFAVTPGASLVSYAAVFVQLLLLKAWNQVMEWRTTF
                     QNDRSMKRMDVIIRFAANTLVLYFVFQSVYMYALLVYVIMAVLYLYMSSAAKRKTFKW
                     ESHIESELRRKQRFYRIANLFTDVPHLRKQAKRRAYLDFLLRLVPFEQRKTFAYMFTR
                     AFLRSSDYLGILVRLTIVFALIIMYVSASPLIAAVLTVFAIFITGIQLLPLFGHFDHL
                     ALQELYPVQKETKLKSYFSLLKTALSIQALLMSVASAYAAGLTGFLYALIGSAVLIFV
                     VLPAYMTTRLKKHGKL*"
                     /label="ecsB CDS"
     gene            1002401..1003627
                     /gene="ecsB"
                     /locus_tag="BSU_10050"
                     /old_locus_tag="BSU10050"
                     /label="ecsB gene"
     promotor_-10    complement(1002960..1002978)
                     /Source="Nicolas_upshift_promotors"
                     /id="U809"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.999000999001"
                     /psig="0.999000999001"
                     /xcortree=1033
                     /SigmaFactorBS="tttgctgcggaagacatatacagataaagaacagccATAATG
                     acatagacgagaagcGCATACATATAAACAGATTggaaaacaaaataaagaacgagtg
                     t"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(1002975)
                     /Source="Nicolas_upshifts"
                     /id="U809"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.999000999001"
                     /psig="0.999000999001"
                     /xcortree=1033
                     /SigmaFactorBS="tttgctgcggaagacatatacagataaagaacagccATAATG
                     acatagacgagaagcGCATACATATAAACAGATTggaaaacaaaataaagaacgagtg
                     t"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(1002994..1002999)
                     /Source="Nicolas_upshift_promotors"
                     /id="U809"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.999000999001"
                     /psig="0.999000999001"
                     /xcortree=1033
                     /SigmaFactorBS="tttgctgcggaagacatatacagataaagaacagccATAATG
                     acatagacgagaagcGCATACATATAAACAGATTggaaaacaaaataaagaacgagtg
                     t"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             1003647..1004357
                     /gene="ecsC"
                     /locus_tag="BSU_10060"
                     /old_locus_tag="BSU10060"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 8581172, 10027970;
                     Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative hydrolase"
                     /protein_id="NP_388887.1"
                     /db_xref="EnsemblGenomes-Gn:BSU10060"
                     /db_xref="EnsemblGenomes-Tr:CAB12846"
                     /db_xref="InterPro:IPR024787"
                     /db_xref="SubtiList:BG11518"
                     /db_xref="UniProtKB/Swiss-Prot:P55341"
                     /translation="MTDNQLLMQEALEWKMHFLRKDSMFERFSKRVQTKVNERIPEKI
                     HTVVTESVKKMVEATMAGSNIITYKKDTSALSLSEKNELAKKTIVSYQKVAAAEGVGT
                     GAGGIFLSIADFPLLLSIKMKCLFTLSSIYGFDVKDAQERIFLLLVFQLAFSSDDGRK
                     SLFSVIENWETEKKSIDWRVFQQEYRDYIDVVKLFQLLPGVGAAVGGIANYKLLAQLG
                     ETARHVFHLRILKETAGE*"
                     /label="ecsC CDS"
     gene            1003647..1004357
                     /gene="ecsC"
                     /locus_tag="BSU_10060"
                     /old_locus_tag="BSU10060"
                     /label="ecsC gene"
     downshifts      1004321
                     /Source="Nicolas_upshifts"
                     /id="D546"
                     /incds=0
                     /nref=78
                     /ntot=231
                     /MaxReadThrough="1.36097"
                     /MaxDrop="4.78417"
                     /score="28.5337351"
                     /energy="-14.6"
                     /TU="NA"
                     /idTUdmin="U808"
                     /TUdmin="-8"
                     /isTUend="TRUE"
                     /label="downshifts"
     CDS             complement(1004375..1005565)
                     /gene="sndC"
                     /locus_tag="BSU_10070"
                     /old_locus_tag="BSU10070"
                     /EC_number="3.5.1.-"
                     /experiment="publication(s) with functional evidences,
                     PMID:23944997"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 23944997; Product type e:
                     enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetyl amino acid acetylase, promiscuous
                     activity"
                     /protein_id="NP_388888.2"
                     /db_xref="EnsemblGenomes-Gn:BSU10070"
                     /db_xref="EnsemblGenomes-Tr:CAB12847"
                     /db_xref="GOA:O07598"
                     /db_xref="InterPro:IPR002933"
                     /db_xref="InterPro:IPR011650"
                     /db_xref="InterPro:IPR017439"
                     /db_xref="InterPro:IPR036264"
                     /db_xref="SubtiList:BG12982"
                     /db_xref="UniProtKB/Swiss-Prot:O07598"
                     /translation="MSISTLQKEINKQLDGCFEEMVEIRRHFHMYPELSFQEEKTAAF
                     IASYYESLGVPIRTNVGGRGVLANIEGSEPGPTVALRADFDALPIQDEKDVPYASKVP
                     GVMHACGHDGHTAALLAVAKVLHQNRHELKGTFVMIHQHAEEYYPGGAKPMIDDGCLE
                     NTDVIFGTHLWATEPLGTILCRPGAVMAAADRFTIKVFGKGGHGAHPHDTKDAVLIGS
                     QIVSSLQHIVSRKVNPIQSAVISTGSFIADNPFNVIADQAVLIGTARSFDENVRDILE
                     KEIEAVVKGICSMHGASYEYTYEQGYPAVVNHPAETNHLVSTAKNTEGVQQVIDGEPQ
                     MGGEDFAYYLQNVKGTFFFTGAAPEQPERVYSHHHPKFDINEKAMLTAAKVLAGAAIT
                     YHQL*"
                     /label="sndC CDS"
     gene            complement(1004375..1005565)
                     /gene="sndC"
                     /locus_tag="BSU_10070"
                     /old_locus_tag="BSU10070"
                     /label="sndC gene"
     downshifts      complement(1004385)
                     /Source="Nicolas_upshifts"
                     /id="D547"
                     /incds=0
                     /nref=11
                     /ntot=162
                     /MaxReadThrough="3.12546"
                     /MaxDrop="4.15559"
                     /score="-4.78420642"
                     /energy="-14.6"
                     /TU="U810"
                     /idTUdmin="U811"
                     /TUdmin="-2"
                     /isTUend="TRUE"
                     /label="downshifts"
     downshifts      complement(1004450)
                     /Source="Nicolas_upshifts"
                     /id="D548"
                     /incds=1
                     /nref=25
                     /ntot=206
                     /MaxReadThrough="4.92378"
                     /MaxDrop="3.21645"
                     /score="-4.78420642"
                     /energy="-14.6"
                     /TU="U810,U811"
                     /idTUdmin="U811"
                     /TUdmin="-67"
                     /isTUend="FALSE"
                     /label="downshifts"
     promotor_-10    complement(1005589..1005608)
                     /Source="Nicolas_upshift_promotors"
                     /id="U810"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.498501498501498"
                     /psig=1
                     /xcortree=2900
                     /SigmaFactorBS="gtgacaaccctcgcagctgtgatgatgctttaaaacagcatg
                     aGTTGAAatattcagactttTTCTATACAATCATGGAAAAgcatagaaaagggggaag
                     c"
                     /listShort="yhaA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(1005610)
                     /Source="Nicolas_upshifts"
                     /id="U810"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.498501498501498"
                     /psig=1
                     /xcortree=2900
                     /SigmaFactorBS="gtgacaaccctcgcagctgtgatgatgctttaaaacagcatg
                     aGTTGAAatattcagactttTTCTATACAATCATGGAAAAgcatagaaaagggggaag
                     c"
                     /listShort="yhaA"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(1005622..1005627)
                     /Source="Nicolas_upshift_promotors"
                     /id="U810"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.498501498501498"
                     /psig=1
                     /xcortree=2900
                     /SigmaFactorBS="gtgacaaccctcgcagctgtgatgatgctttaaaacagcatg
                     aGTTGAAatattcagactttTTCTATACAATCATGGAAAAgcatagaaaagggggaag
                     c"
                     /listShort="yhaA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             complement(1005638..1007029)
                     /gene="yhfA"
                     /locus_tag="BSU_10080"
                     /old_locus_tag="BSU10080"
                     /function="16.1: Circulate"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 15849754, 16850406,
                     12107147; Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="putative transporter"
                     /protein_id="NP_388889.1"
                     /db_xref="EnsemblGenomes-Gn:BSU10080"
                     /db_xref="EnsemblGenomes-Tr:CAB12848"
                     /db_xref="GOA:O07599"
                     /db_xref="SubtiList:BG13047"
                     /db_xref="UniProtKB/Swiss-Prot:O07599"
                     /translation="MMEVGILPVHVLYVFFIGAIILFMLLRKDTTFISLFGIFIISLW
                     ASHSLSASVSSLFHSFIYAAGELLPTIFIICFIVSMSDLLTKTGINEAMISPFASLVR
                     GPVTAYWLIGGLMFAISLFFWPSPGVALIGAVLLPAAARAGLTPLAAAMAMNLFGHGF
                     ALSGDFVIQAAPKLTADAAGIPVGDVVSASIPLVLIMGVTTTTAAFIMIQRERKKQEH
                     PTSFSPVLSGEQDNSLYLPKRLRSILAFLIPLAFLADIACMLLFNLQGNDATALIGGS
                     AICILFTVHFFVYKHKGLEKITGYFIDGFKFGFKVFGPVIPIAAFFYLGDSGYESILG
                     TSLPKGSHGIVNDLGIALSHMMPMSKELAATALTAAGAITGLDGSGFSGISLAGSIAK
                     LFSSALHADPAILTALGQISAIWVGGGTLVPWALIPAAAICKVDPFELARKNFIPVAI
                     GLLVTTLAAVMML*"
                     /label="yhfA CDS"
     gene            complement(1005638..1007029)
                     /gene="yhfA"
                     /locus_tag="BSU_10080"
                     /old_locus_tag="BSU10080"
                     /label="yhfA gene"
     promotor_-10    complement(1007040..1007059)
                     /Source="Nicolas_upshift_promotors"
                     /id="U811"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp=1
                     /psig=1
                     /xcortree=1283
                     /SigmaFactorBS="ttccatcataaccctcccctctgtCCCGGCACCTtccgcccg
                     cctaTGAATAATCTGTAAGCGGAAggagtgatcgatgatggaagtcgggattttgcct
                     g"
                     /listShort="yhfA, yhaA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(1007045)
                     /Source="Nicolas_upshifts"
                     /id="U811"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp=1
                     /psig=1
                     /xcortree=1283
                     /SigmaFactorBS="ttccatcataaccctcccctctgtCCCGGCACCTtccgcccg
                     cctaTGAATAATCTGTAAGCGGAAggagtgatcgatgatggaagtcgggattttgcct
                     g"
                     /listShort="yhfA, yhaA"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(1007072..1007081)
                     /Source="Nicolas_upshift_promotors"
                     /id="U811"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp=1
                     /psig=1
                     /xcortree=1283
                     /SigmaFactorBS="ttccatcataaccctcccctctgtCCCGGCACCTtccgcccg
                     cctaTGAATAATCTGTAAGCGGAAggagtgatcgatgatggaagtcgggattttgcct
                     g"
                     /listShort="yhfA, yhaA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             complement(1007095..1007409)
                     /gene="yhgB"
                     /locus_tag="BSU_10090"
                     /old_locus_tag="BSU10090"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 5: Unknown function"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="NP_388890.1"
                     /db_xref="EnsemblGenomes-Gn:BSU10090"
                     /db_xref="EnsemblGenomes-Tr:CAB12849"
                     /db_xref="SubtiList:BG10426"
                     /db_xref="UniProtKB/Swiss-Prot:P38048"
                     /translation="MKHTCPVCGFKDWLNRHMIMKAIILMKSARAAVFSSDLMSTRCS
                     TRITHIEPSESIIAYRKNWLAEGCVIFSPECFPKHLQKANRGLRHHLIEQLKQINVHL
                     PS*"
                     /label="yhgB CDS"
     gene            complement(1007095..1007409)
                     /gene="yhgB"
                     /locus_tag="BSU_10090"
                     /old_locus_tag="BSU10090"
                     /label="yhgB gene"
     CDS             complement(1007454..1007954)
                     /gene="hmoB"
                     /locus_tag="BSU_10100"
                     /old_locus_tag="BSU10100"
                     /EC_number="1.14.99.48"
                     /function="16.11: Scavenge (Catabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:21873409, 22531134, 24582752"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 21873409, 22531134,
                     24582752; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="heme-degrading monooxygenase"
                     /protein_id="NP_388891.1"
                     /db_xref="EnsemblGenomes-Gn:BSU10100"
                     /db_xref="EnsemblGenomes-Tr:CAB12850"
                     /db_xref="GOA:P38049"
                     /db_xref="InterPro:IPR007138"
                     /db_xref="InterPro:IPR011008"
                     /db_xref="PDB:4OZ5"
                     /db_xref="SubtiList:BG10427"
                     /db_xref="UniProtKB/Swiss-Prot:P38049"
                     /translation="MKVYITYGTADFLKTIVQKHPSENILLMQGQENAILIHETNGDT
                     VFQAPHAYEVIDQVGEIKHPGFAVLNNIAVTQEGRPLFENRFKNRAGKVENEPGFEAI
                     RVLRPLDSDTYVILTLWETESAFQDWQQSGSYKEAHKKRDTSAGIDTTSIFSRPSYVT
                     TYFAVE*"
                     /label="hmoB CDS"
     gene            complement(1007454..1007954)
                     /gene="hmoB"
                     /locus_tag="BSU_10100"
                     /old_locus_tag="BSU10100"
                     /label="hmoB gene"
     downshifts      complement(1007481)
                     /Source="Nicolas_upshifts"
                     /id="D549"
                     /incds=0
                     /nref=145
                     /ntot=254
                     /MaxReadThrough="3.45185"
                     /MaxDrop="5.6374"
                     /score="15.5142908"
                     /energy="-14.8"
                     /TU="U812"
                     /idTUdmin="U812"
                     /TUdmin="-546"
                     /isTUend="FALSE"
                     /label="downshifts"
     promotor_-10    complement(1007967..1007986)
                     /Source="Nicolas_upshift_promotors"
                     /id="U812"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.555444555444555"
                     /psig="0.98101898101898"
                     /xcortree=101
                     /SigmaFactorBS="tatgggaaaaattgtttggaattatgttcgaagcactcgcca
                     atAGaaacttataccattgtTTTGATATACTAGCAAGCAGgaggtggctgatatgaag
                     g"
                     /listShort="yhgC, yhgB, yhfA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     promotor_-35    1007969..1007973
                     /Source="Nicolas_upshift_promotors"
                     /id="U813"
                     /multdbtbs="SigA"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.953046953046953"
                     /psig="0.957042957042957"
                     /xcortree=1837
                     /SigmaFactorBS="tcccatatgtaatataaaccttcatatcagccacctcctGCT
                     TGctagtatatcaaaacAATGGTATAAGTTTCTATTGgcgagtgcttcgaacataatt
                     c"
                     /listShort="pbpF, hemE, hemH, hemY"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     upshifts        complement(1007988)
                     /Source="Nicolas_upshifts"
                     /id="U812"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.555444555444555"
                     /psig="0.98101898101898"
                     /xcortree=101
                     /SigmaFactorBS="tatgggaaaaattgtttggaattatgttcgaagcactcgcca
                     atAGaaacttataccattgtTTTGATATACTAGCAAGCAGgaggtggctgatatgaag
                     g"
                     /listShort="yhgC, yhgB, yhfA"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-10    1007989..1008008
                     /Source="Nicolas_upshift_promotors"
                     /id="U813"
                     /multdbtbs="SigA"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.953046953046953"
                     /psig="0.957042957042957"
                     /xcortree=1837
                     /SigmaFactorBS="tcccatatgtaatataaaccttcatatcagccacctcctGCT
                     TGctagtatatcaaaacAATGGTATAAGTTTCTATTGgcgagtgcttcgaacataatt
                     c"
                     /listShort="pbpF, hemE, hemH, hemY"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        1007990
                     /Source="Nicolas_upshifts"
                     /id="U813"
                     /multdbtbs="SigA"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.953046953046953"
                     /psig="0.957042957042957"
                     /xcortree=1837
                     /SigmaFactorBS="tcccatatgtaatataaaccttcatatcagccacctcctGCT
                     TGctagtatatcaaaacAATGGTATAAGTTTCTATTGgcgagtgcttcgaacataatt
                     c"
                     /listShort="pbpF, hemE, hemH, hemY"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(1008003..1008004)
                     /Source="Nicolas_upshift_promotors"
                     /id="U812"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.555444555444555"
                     /psig="0.98101898101898"
                     /xcortree=101
                     /SigmaFactorBS="tatgggaaaaattgtttggaattatgttcgaagcactcgcca
                     atAGaaacttataccattgtTTTGATATACTAGCAAGCAGgaggtggctgatatgaag
                     g"
                     /listShort="yhgC, yhgB, yhfA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-35    1008021..1008027
                     /Source="Nicolas_upshift_promotors"
                     /id="U814"
                     /multdbtbs="-"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp=1
                     /psig=1
                     /xcortree=871
                     /SigmaFactorBS="acaatggtataagtttctattggcgagtgcttcgAACATAAt
                     tccaaacaattttTCCCATACTACCtttagaaaggcgaggtgagttcatgtttaagat
                     a"
                     /listShort="pbpF, hemE, hemH"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    1008042..1008053
                     /Source="Nicolas_upshift_promotors"
                     /id="U814"
                     /multdbtbs="-"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp=1
                     /psig=1
                     /xcortree=871
                     /SigmaFactorBS="acaatggtataagtttctattggcgagtgcttcgAACATAAt
                     tccaaacaattttTCCCATACTACCtttagaaaggcgaggtgagttcatgtttaagat
                     a"
                     /listShort="pbpF, hemE, hemH"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        1008047
                     /Source="Nicolas_upshifts"
                     /id="U814"
                     /multdbtbs="-"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp=1
                     /psig=1
                     /xcortree=871
                     /SigmaFactorBS="acaatggtataagtttctattggcgagtgcttcgAACATAAt
                     tccaaacaattttTCCCATACTACCtttagaaaggcgaggtgagttcatgtttaagat
                     a"
                     /listShort="pbpF, hemE, hemH"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             1008076..1010220
                     /gene="pbpF"
                     /locus_tag="BSU_10110"
                     /old_locus_tag="BSU10110"
                     /function="16.13: Shape"
                     /function="16.8: Protect"
                     /experiment="publication(s) with functional evidences,
                     PMID:8335642, 11567005, 22720735"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 8335642, 11567005,
                     22720735; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin-binding protein 2C (1F class)
                     required for spore germination"
                     /protein_id="NP_388892.2"
                     /db_xref="EnsemblGenomes-Gn:BSU10110"
                     /db_xref="EnsemblGenomes-Tr:CAB12851"
                     /db_xref="GOA:P38050"
                     /db_xref="InterPro:IPR001264"
                     /db_xref="InterPro:IPR001460"
                     /db_xref="InterPro:IPR012338"
                     /db_xref="InterPro:IPR023346"
                     /db_xref="InterPro:IPR036950"
                     /db_xref="SubtiList:BG10428"
                     /db_xref="UniProtKB/Swiss-Prot:P38050"
                     /translation="MFKIKKKKLFIPIIILVLTAFLALIGYISIIFLGHYVIDEKKLI
                     LHASSKIVDQNGDEVASLYTENREPVSINEIPKQVREAFIAVEDKRFYEHHGIDAKSV
                     GRAVYRDILAGGKVEGGSTITQQLAKNIFLTHDKTFLRKTKEVIIAINLERDYSKDKL
                     LEMYLNQLYFGHGVYGIQAASHYYFNKEVKDLTVSEGAVLAAIPKAPSTYSPILHPDK
                     NKERRDTILGMMNDQGYISAKEAVTAQGRTLGLHVKKQSETPWFDSYIDLVIKEAEDK
                     YSISGEQLLQGGYTIKVPLDSKLQKTAYQVMKEGSYYPGTDQNAEGSAVFINNKTGGV
                     EAAIGGRDYTSKGYNRVTAVRQPGSTFKPLAVYGPAMQEKKFKPYSLLKDELQSYGDY
                     TPKNYDSRYEGEVTMSDAITYSKNAPAVWTLNEIGVETGKSYLKANGIDIPDEGLALA
                     LGGLEKGVSPLQLAGAFHTFAANGTYTEPFFISSIIDEDGETIADHKEEGKRVFSKQT
                     SWNMTRMLQQVVKKGTATSGTYHGDLAGKTGSTSYTGVSGATKDAWFAGYTPKITGAV
                     WMGYDKTDQNHYLKAGSSYPTRLFKDILTQAGETGHVFTKPKNVKELESPIELKPVKT
                     LTADYTFKAAGLFTIELKWDAQEDDRAVYRIYVNKDGEETLLDSVEGKGSYEIPYANL
                     FSGASYKIVPYNTQTKREGEGTDYVQPKLFSS*"
                     /label="pbpF CDS"
     gene            1008076..1010220
                     /gene="pbpF"
                     /locus_tag="BSU_10110"
                     /old_locus_tag="BSU10110"
                     /label="pbpF gene"
     promotor_-10    complement(1008120..1008131)
                     /Source="Nicolas_upshift_promotors"
                     /id="U815"
                     /multdbtbs="-"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp="0.595404595404595"
                     /psig="0.595404595404595"
                     /xcortree=1190
                     /SigmaFactorBS="ataatggccgagaaaaataattgaaatatatcCTATTAAagc
                     gagaaaagcaGTTAACACTAAAataatgataggtataaaaagtttctttttctttatc
                     t"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(1008123)
                     /Source="Nicolas_upshifts"
                     /id="U815"
                     /multdbtbs="-"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp="0.595404595404595"
                     /psig="0.595404595404595"
                     /xcortree=1190
                     /SigmaFactorBS="ataatggccgagaaaaataattgaaatatatcCTATTAAagc
                     gagaaaagcaGTTAACACTAAAataatgataggtataaaaagtttctttttctttatc
                     t"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(1008145..1008151)
                     /Source="Nicolas_upshift_promotors"
                     /id="U815"
                     /multdbtbs="-"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp="0.595404595404595"
                     /psig="0.595404595404595"
                     /xcortree=1190
                     /SigmaFactorBS="ataatggccgagaaaaataattgaaatatatcCTATTAAagc
                     gagaaaagcaGTTAACACTAAAataatgataggtataaaaagtttctttttctttatc
                     t"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-35    1010257..1010263
                     /Source="Nicolas_upshift_promotors"
                     /id="U816"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.377622377622378"
                     /psig="0.998001998001998"
                     /xcortree=1606
                     /SigmaFactorBS="tcggcgattttttgaactttgagctacattTCTATACcattt
                     gcctaaaaCAAGGTATAGTGTAATAAGTcaagaaatacgaacgtatggttgccgtatg
                     a"
                     /listShort="hemE, hemH, hemY"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    1010277..1010296
                     /Source="Nicolas_upshift_promotors"
                     /id="U816"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.377622377622378"
                     /psig="0.998001998001998"
                     /xcortree=1606
                     /SigmaFactorBS="tcggcgattttttgaactttgagctacattTCTATACcattt
                     gcctaaaaCAAGGTATAGTGTAATAAGTcaagaaatacgaacgtatggttgccgtatg
                     a"
                     /listShort="hemE, hemH, hemY"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        1010287
                     /Source="Nicolas_upshifts"
                     /id="U816"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.377622377622378"
                     /psig="0.998001998001998"
                     /xcortree=1606
                     /SigmaFactorBS="tcggcgattttttgaactttgagctacattTCTATACcattt
                     gcctaaaaCAAGGTATAGTGTAATAAGTcaagaaatacgaacgtatggttgccgtatg
                     a"
                     /listShort="hemE, hemH, hemY"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             1010342..1011403
                     /gene="hemE"
                     /locus_tag="BSU_10120"
                     /old_locus_tag="BSU10120"
                     /EC_number="4.1.1.37"
                     /function="16.2: Construct biomass (Anabolism)"
                     /function="16.10: Respire"
                     /experiment="publication(s) with functional evidences,
                     PMID:10217486, 17122346"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 10217486, 17122346;
                     Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="uroporphyrinogen III decarboxylase"
                     /protein_id="NP_388893.1"
                     /db_xref="EnsemblGenomes-Gn:BSU10120"
                     /db_xref="EnsemblGenomes-Tr:CAB12852"
                     /db_xref="GOA:P32395"
                     /db_xref="InterPro:IPR000257"
                     /db_xref="InterPro:IPR006361"
                     /db_xref="PDB:2INF"
                     /db_xref="SubtiList:BG10429"
                     /db_xref="UniProtKB/Swiss-Prot:P32395"
                     /translation="MSKRETFNETFLKAARGEKADHTPVWYMRQAGRSQPEYRKLKEK
                     YGLFEITHQPELCAYVTRLPVEQYGVDAAILYKDIMTPLPSIGVDVEIKNGIGPVIDQ
                     PIRSLADIEKLGQIDPEQDVPYVLETIKLLVNEQLNVPLIGFSGAPFTLASYMIEGGP
                     SKNYNKTKAFMYSMPDAWNLLMSKLADMIIVYVKAQIEAGAKAIQIFDSWVGALNQAD
                     YRTYIKPVMNRIFSELAKENVPLIMFGVGASHLAGDWHDLPLDVVGLDWRLGIDEARS
                     KGITKTVQGNLDPSILLAPWEVIEQKTKEILDQGMESDGFIFNLGHGVFPDVSPEVLK
                     KLTAFVHEYSQNKKMGQYS*"
                     /label="hemE CDS"
     gene            1010342..1011403
                     /gene="hemE"
                     /locus_tag="BSU_10120"
                     /old_locus_tag="BSU10120"
                     /label="hemE gene"
     CDS             1011475..1012407
                     /gene="hemH"
                     /locus_tag="BSU_10130"
                     /old_locus_tag="BSU10130"
                     /EC_number="4.99.1.1"
                     /function="16.2: Construct biomass (Anabolism)"
                     /function="16.10: Respire"
                     /experiment="publication(s) with functional evidences,
                     PMID:8119288, 12686546, 12761666, 16140324, 16453119,
                     17198378, 20543190, 21052751"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 8119288, 12686546,
                     12761666, 16140324, 16453119, 17198378, 20543190,
                     21052751; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="ferrochelatase"
                     /protein_id="NP_388894.1"
                     /db_xref="EnsemblGenomes-Gn:BSU10130"
                     /db_xref="EnsemblGenomes-Tr:CAB12853"
                     /db_xref="GOA:P32396"
                     /db_xref="InterPro:IPR001015"
                     /db_xref="InterPro:IPR019772"
                     /db_xref="InterPro:IPR033644"
                     /db_xref="InterPro:IPR033659"
                     /db_xref="PDB:1AK1"
                     /db_xref="PDB:1C1H"
                     /db_xref="PDB:1C9E"
                     /db_xref="PDB:1DOZ"
                     /db_xref="PDB:1FJI"
                     /db_xref="PDB:1LD3"
                     /db_xref="PDB:1N0I"
                     /db_xref="PDB:2AC2"
                     /db_xref="PDB:2AC4"
                     /db_xref="PDB:2H1V"
                     /db_xref="PDB:2H1W"
                     /db_xref="PDB:2HK6"
                     /db_xref="PDB:2Q2N"
                     /db_xref="PDB:2Q2O"
                     /db_xref="PDB:2Q3J"
                     /db_xref="PDB:3GOQ"
                     /db_xref="PDB:3M4Z"
                     /db_xref="SubtiList:BG10430"
                     /db_xref="UniProtKB/Swiss-Prot:P32396"
                     /translation="MSRKKMGLLVMAYGTPYKEEDIERYYTHIRRGRKPEPEMLQDLK
                     DRYEAIGGISPLAQITEQQAHNLEQHLNEIQDEITFKAYIGLKHIEPFIEDAVAEMHK
                     DGITEAVSIVLAPHFSTFSVQSYNKRAKEEAEKLGGLTITSVESWYDEPKFVTYWVDR
                     VKETYASMPEDERENAMLIVSAHSLPEKIKEFGDPYPDQLHESAKLIAEGAGVSEYAV
                     GWQSEGNTPDPWLGPDVQDLTRDLFEQKGYQAFVYVPVGFVADHLEVLYDNDYECKVV
                     TDDIGASYYRPEMPNAKPEFIDALATVVLKKLGR*"
                     /label="hemH CDS"
     gene            1011475..1012407
                     /gene="hemH"
                     /locus_tag="BSU_10130"
                     /old_locus_tag="BSU10130"
                     /label="hemH gene"
     CDS             1012422..1013834
                     /gene="hemY"
                     /locus_tag="BSU_10140"
                     /old_locus_tag="BSU10140"
                     /EC_number="1.3.3.4"
                     /function="16.10: Respire"
                     /function="16.2: Construct biomass (Anabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:9217019, 9784236, 10498703, 20543190"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 9217019, 9784236,
                     10498703, 20543190; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="promiscuous protoporphyrinogen IX and
                     coproporphyrinogen III oxidase"
                     /protein_id="NP_388895.1"
                     /db_xref="EnsemblGenomes-Gn:BSU10140"
                     /db_xref="EnsemblGenomes-Tr:CAB12854"
                     /db_xref="GOA:P32397"
                     /db_xref="InterPro:IPR002937"
                     /db_xref="InterPro:IPR004572"
                     /db_xref="InterPro:IPR036188"
                     /db_xref="PDB:3I6D"
                     /db_xref="SubtiList:BG10431"
                     /db_xref="UniProtKB/Swiss-Prot:P32397"
                     /translation="MSDGKKHVVIIGGGITGLAAAFYMEKEIKEKNLPLELTLVEASP
                     RVGGKIQTVKKDGYIIERGPDSFLERKKSAPQLVKDLGLEHLLVNNATGQSYVLVNRT
                     LHPMPKGAVMGIPTKIAPFVSTGLFSLSGKARAAMDFILPASKTKDDQSLGEFFRRRV
                     GDEVVENLIEPLLSGIYAGDIDKLSLMSTFPQFYQTEQKHRSLILGMKKTRPQGSGQQ
                     LTAKKQGQFQTLSTGLQTLVEEIEKQLKLTKVYKGTKVTKLSHSGSCYSLELDNGVTL
                     DADSVIVTAPHKAAAGMLSELPAISHLKNMHSTSVANVALGFPEGSVQMEHEGTGFVI
                     SRNSDFAITACTWTNKKWPHAAPEGKTLLRAYVGKAGDESIVDLSDNDIINIVLEDLK
                     KVMNINGEPEMTCVTRWHESMPQYHVGHKQRIKELREALASAYPGVYMTGASFEGVGI
                     PDCIDQGKAAVSDALTYLFS*"
                     /label="hemY CDS"
     gene            1012422..1013834
                     /gene="hemY"
                     /locus_tag="BSU_10140"
                     /old_locus_tag="BSU10140"
                     /label="hemY gene"
     downshifts      1012425
                     /Source="Nicolas_upshifts"
                     /id="D550"
                     /incds=0
                     /nref=1
                     /ntot=19
                     /MaxReadThrough="7.68191"
                     /MaxDrop="2.667"
                     /score="28.7532434"
                     /energy="-11.6"
                     /TU="U813,U816"
                     /idTUdmin="U814"
                     /TUdmin=0
                     /isTUend="TRUE"
                     /label="downshifts"
     downshifts      1013811
                     /Source="Nicolas_upshifts"
                     /id="D551"
                     /incds=0
                     /nref=195
                     /ntot=254
                     /MaxReadThrough="2.9859"
                     /MaxDrop="6.7703"
                     /score="28.7532434"
                     /energy="-11.6"
                     /TU="NA"
                     /idTUdmin="U813"
                     /TUdmin=0
                     /isTUend="TRUE"
                     /label="downshifts"
     promotor_-35    1013895..1013902
                     /Source="Nicolas_upshift_promotors"
                     /id="U817"
                     /multdbtbs="-"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp="0.825174825174825"
                     /psig=1
                     /xcortree=2648
                     /SigmaFactorBS="tttgatgtgcaatggcaatattgtgtaaaaaatgATTGAATT
                     gaacagcaggttaTGATACATTTGCATATGTACttaatgactaaaatgttcaaacggt
                     c"
                     /listShort="yhgD, S358, yhgE"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    1013916..1013935
                     /Source="Nicolas_upshift_promotors"
                     /id="U817"
                     /multdbtbs="-"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp="0.825174825174825"
                     /psig=1
                     /xcortree=2648
                     /SigmaFactorBS="tttgatgtgcaatggcaatattgtgtaaaaaatgATTGAATT
                     gaacagcaggttaTGATACATTTGCATATGTACttaatgactaaaatgttcaaacggt
                     c"
                     /listShort="yhgD, S358, yhgE"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        1013921
                     /Source="Nicolas_upshifts"
                     /id="U817"
                     /multdbtbs="-"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp="0.825174825174825"
                     /psig=1
                     /xcortree=2648
                     /SigmaFactorBS="tttgatgtgcaatggcaatattgtgtaaaaaatgATTGAATT
                     gaacagcaggttaTGATACATTTGCATATGTACttaatgactaaaatgttcaaacggt
                     c"
                     /listShort="yhgD, S358, yhgE"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             1013980..1014555
                     /gene="yhgD"
                     /locus_tag="BSU_10150"
                     /old_locus_tag="BSU10150"
                     /function="16.3: Control"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 1c: Function from experimental evidences
                     in the studied genus; PubMedId: 15944459, 23695570;
                     Product type r: regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator of unknown target"
                     /protein_id="NP_388896.1"
                     /db_xref="EnsemblGenomes-Gn:BSU10150"
                     /db_xref="EnsemblGenomes-Tr:CAB12855"
                     /db_xref="GOA:P32398"
                     /db_xref="InterPro:IPR001647"
                     /db_xref="InterPro:IPR009057"
                     /db_xref="InterPro:IPR023772"
                     /db_xref="InterPro:IPR036271"
                     /db_xref="SubtiList:BG10432"
                     /db_xref="UniProtKB/Swiss-Prot:P32398"
                     /translation="MSIDRKKLILEAATKSFTQFGYKATTMDLVAKLANVGKGTIYTF
                     FKNKEELFDEIFTTLLKEMKQKADEAMEPSLPFHENVHRALFAILEFRKTHQLTIKIF
                     QENAEIGTMAVQEVIQKMERSILSYIKSKIEDGIKSGAIKPCDPELTAFVMLKLYIAL
                     IFDWEKQHPPLDKETIAGLLELYVVKGLSAN*"
                     /label="yhgD CDS"
     gene            1013980..1014555
                     /gene="yhgD"
                     /locus_tag="BSU_10150"
                     /old_locus_tag="BSU10150"
                     /label="yhgD gene"
     promotor_-35    1014299..1014302
                     /Source="Nicolas_upshift_promotors"
                     /id="U818"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp="0.731268731268731"
                     /psig="0.731268731268731"
                     /xcortree=140
                     /SigmaFactorBS="aaacacatcagctgacgattaaaattttccaagagaatgccg
                     AGATtggtacaatggcagttCAGGAAGTGATCCAGAAAATggagcgatccatcctgtc
                     t"
                     /listShort="S358, yhgE"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     upshifts        1014317
                     /Source="Nicolas_upshifts"
                     /id="U818"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp="0.731268731268731"
                     /psig="0.731268731268731"
                     /xcortree=140
                     /SigmaFactorBS="aaacacatcagctgacgattaaaattttccaagagaatgccg
                     AGATtggtacaatggcagttCAGGAAGTGATCCAGAAAATggagcgatccatcctgtc
                     t"
                     /listShort="S358, yhgE"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-10    1014319..1014338
                     /Source="Nicolas_upshift_promotors"
                     /id="U818"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp="0.731268731268731"
                     /psig="0.731268731268731"
                     /xcortree=140
                     /SigmaFactorBS="aaacacatcagctgacgattaaaattttccaagagaatgccg
                     AGATtggtacaatggcagttCAGGAAGTGATCCAGAAAATggagcgatccatcctgtc
                     t"
                     /listShort="S358, yhgE"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     S_feature       1014556..1014625
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1090331_1090400"
                     /HighExp="G135, G150, G180, BI, Salt, Etha, Cold, Heat,
                     Oxctl, LBGexp"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigB, SigA"
                     /TUshortPSig="0.731, 1"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S358"
     CDS             1014626..1016953
                     /gene="yhgE"
                     /locus_tag="BSU_10160"
                     /old_locus_tag="BSU10160"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 15576783; Product type
                     f: factor"
                     /codon_start=1
                     /transl_table=11
                     /product="putative methyl-accepting protein"
                     /protein_id="NP_388897.1"
                     /db_xref="EnsemblGenomes-Gn:BSU10160"
                     /db_xref="EnsemblGenomes-Tr:CAB12856"
                     /db_xref="GOA:P32399"
                     /db_xref="InterPro:IPR017500"
                     /db_xref="InterPro:IPR017501"
                     /db_xref="InterPro:IPR020846"
                     /db_xref="InterPro:IPR023908"
                     /db_xref="SubtiList:BG10433"
                     /db_xref="UniProtKB/Swiss-Prot:P32399"
                     /translation="MNTIRSQWKDIVTSKKLLIPIIAILFVPLIYSGVFLKAYWDPYG
                     TVDQLPVVVVNQDKGATYEGEKLQIGDDLVKELKDNNNFDWHFSNDLDQSLKDLLNQK
                     YYLVVEIPEDFSKNASTVLDKNPKKLDLKYHTNAGSNYVGATIGEKAIDKLKASVSKE
                     VTEQYTKVIFDNFKDIAKGLSDASSGAKKIDDGTKDAKNGSAQLKENLAKLKESTATI
                     SDKTAQLADGAAQVTSGIQSLDSSLGKFQDSSNQIYDKSSQLAAGSGELTSKMNELLA
                     GLQNVQKGTPNLTNGLDQLNSKVQEGSEKAAKAEKIINALDLTKLETAVNNLEKSETA
                     MKEFKKQLTDFENSLKNRDQAFKNVINSSDFLTAEQKSQLINSVEKKLPQVDAPDFDQ
                     ILSQLPTADQLPDIATIKSSLEDVKAQVAQVKAMPEATSKLYNGAKTIQDAIDRLTEG
                     ADKIYNGSQKLTDGQTKLTAGIGEYNKQFAKAKAGSEQLVTGSSQVSGGLFKLLDGSK
                     QVQSGSSKLADGSASLDTGLGKLLDGTGELSSKLKDAADQTGDIDADDQTYGMFADPV
                     KTKDDAIHSVPNYGTGLTPYILSMGLYVGGIMLTVVFPLKEASGRPRNGFEWFFSKFN
                     VMMLVGIIQSLIVATVLLLGIGLEVESTWRFYVFTIITSLAFLAIIQFLATTMGNPGR
                     FIAVIILVLQLGASGGTFPLELLPNFYQVIHGALPMTYSINGFRAVISNGDFGYMWQM
                     AGVLIGIALVMIALSITYFTMLSRKEETSEEQPAS*"
                     /label="yhgE CDS"
     gene            1014626..1016953
                     /gene="yhgE"
                     /locus_tag="BSU_10160"
                     /old_locus_tag="BSU10160"
                     /label="yhgE gene"
     downshifts      1016935
                     /Source="Nicolas_upshifts"
                     /id="D552"
                     /incds=0
                     /nref=65
                     /ntot=211
                     /MaxReadThrough="0.57274"
                     /MaxDrop="5.58483"
                     /score="-4.79013797"
                     /energy="-7.3"
                     /TU="NA"
                     /idTUdmin="U817"
                     /TUdmin=0
                     /isTUend="TRUE"
                     /label="downshifts"
     CDS             complement(1016995..1017972)
                     /gene="fabHB"
                     /locus_tag="BSU_10170"
                     /old_locus_tag="BSU10170"
                     /EC_number="2.3.1.180"
                     /EC_number="2.3.1.38"
                     /function="16.8: Protect"
                     /function="16.2: Construct biomass (Anabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:10629181, 21383089, 21542858"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 10629181, 21383089,
                     21542858; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="beta-ketoacyl-acyl carrier protein synthase III
                     2"
                     /protein_id="NP_388898.1"
                     /db_xref="EnsemblGenomes-Gn:BSU10170"
                     /db_xref="EnsemblGenomes-Tr:CAB12857"
                     /db_xref="GOA:O07600"
                     /db_xref="InterPro:IPR004655"
                     /db_xref="InterPro:IPR013747"
                     /db_xref="InterPro:IPR013751"
                     /db_xref="InterPro:IPR016039"
                     /db_xref="SubtiList:BG13048"
                     /db_xref="UniProtKB/Swiss-Prot:O07600"
                     /translation="MSKAKITAIGTYAPSRRLTNADLEKIVDTSDEWIVQRTGMRERR
                     IADEHQFTSDLCIEAVKNLKSRYKGTLDDVDMILVATTTSDYAFPSTACRVQEYFGWE
                     STGALDINATCAGLTYGLHLANGLITSGLHQKILVIAGETLSKVTDYTDRTTCVLFGD
                     AAGALLVERDEETPGFLASVQGTSGNGGDILYRAGLRNEINGVQLVGSGKMVQNGREV
                     YKWAARTVPGEFERLLHKAGLSSDDLDWFVPHSANLRMIESICEKTPFPIEKTLTSVE
                     HYGNTSSVSIVLALDLAVKAGKLKKDQIVLLFGFGGGLTYTGLLIKWGM*"
                     /label="fabHB CDS"
     gene            complement(1016995..1017972)
                     /gene="fabHB"
                     /locus_tag="BSU_10170"
                     /old_locus_tag="BSU10170"
                     /label="fabHB gene"
     downshifts      complement(1017008)
                     /Source="Nicolas_upshifts"
                     /id="D553"
                     /incds=0
                     /nref=21
                     /ntot=217
                     /MaxReadThrough="1.99012"
                     /MaxDrop="7.90433"
                     /score="-9.17544275"
                     /energy="-7.3"
                     /TU="NA"
                     /idTUdmin="U819"
                     /TUdmin="-19"
                     /isTUend="TRUE"
                     /label="downshifts"
     promotor_-10    complement(1017986..1018005)
                     /Source="Nicolas_upshift_promotors"
                     /id="U819"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.466533466533467"
                     /psig="0.999000999001"
                     /xcortree=2184
                     /SigmaFactorBS="atctacacttctctttttttgtaaaaaaaccttctttttAGT
                     ACCAgatactaatatctAGTGTTATAATCTGACCATAaggagtgattcatatgtcaaa
                     a"
                     /listShort="fabHB"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(1018004)
                     /Source="Nicolas_upshifts"
                     /id="U819"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.466533466533467"
                     /psig="0.999000999001"
                     /xcortree=2184
                     /SigmaFactorBS="atctacacttctctttttttgtaaaaaaaccttctttttAGT
                     ACCAgatactaatatctAGTGTTATAATCTGACCATAaggagtgattcatatgtcaaa
                     a"
                     /listShort="fabHB"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(1018019..1018025)
                     /Source="Nicolas_upshift_promotors"
                     /id="U819"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.466533466533467"
                     /psig="0.999000999001"
                     /xcortree=2184
                     /SigmaFactorBS="atctacacttctctttttttgtaaaaaaaccttctttttAGT
                     ACCAgatactaatatctAGTGTTATAATCTGACCATAaggagtgattcatatgtcaaa
                     a"
                     /listShort="fabHB"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-35    1018031..1018039
                     /Source="Nicolas_upshift_promotors"
                     /id="U820"
                     /multdbtbs="-"
                     /comp="M1"
                     /sig="SigH"
                     /pcomp="0.999000999001"
                     /psig="0.999000999001"
                     /xcortree=3194
                     /SigmaFactorBS="tataacactagatattagtatctggtactaaaaaGAAGGTTT
                     TtttacaaaaaAAGAGAAGTGTAGATAGGAatctatgaaaaagaaaaaggaggctgaa
                     a"
                     /listShort="yhfC, S360, yhfE, yhfF"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    1018050..1018068
                     /Source="Nicolas_upshift_promotors"
                     /id="U820"
                     /multdbtbs="-"
                     /comp="M1"
                     /sig="SigH"
                     /pcomp="0.999000999001"
                     /psig="0.999000999001"
                     /xcortree=3194
                     /SigmaFactorBS="tataacactagatattagtatctggtactaaaaaGAAGGTTT
                     TtttacaaaaaAAGAGAAGTGTAGATAGGAatctatgaaaaagaaaaaggaggctgaa
                     a"
                     /listShort="yhfC, S360, yhfE, yhfF"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        1018057
                     /Source="Nicolas_upshifts"
                     /id="U820"
                     /multdbtbs="-"
                     /comp="M1"
                     /sig="SigH"
                     /pcomp="0.999000999001"
                     /psig="0.999000999001"
                     /xcortree=3194
                     /SigmaFactorBS="tataacactagatattagtatctggtactaaaaaGAAGGTTT
                     TtttacaaaaaAAGAGAAGTGTAGATAGGAatctatgaaaaagaaaaaggaggctgaa
                     a"
                     /listShort="yhfC, S360, yhfE, yhfF"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             1018099..1018875
                     /gene="yhfC"
                     /locus_tag="BSU_10180"
                     /old_locus_tag="BSU10180"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 15849754, 16850406;
                     Product type m: membrane component"
                     /codon_start=1
                     /transl_table=11
                     /product="putative integral membrane protein"
                     /protein_id="NP_388899.1"
                     /db_xref="EnsemblGenomes-Gn:BSU10180"
                     /db_xref="EnsemblGenomes-Tr:CAB12858"
                     /db_xref="GOA:O07601"
                     /db_xref="InterPro:IPR011397"
                     /db_xref="SubtiList:BG13049"
                     /db_xref="UniProtKB/Swiss-Prot:O07601"
                     /translation="MVSQEAVVFLALSGAIAFLLPIGLIVWFKRKYGASLKVFFIGAL
                     TFFVFAQLLEGGVHVYVLQVNEMTKEAMQHPLWYGIYGCLMAGIFEECGRYLMMRFFM
                     KRHHTWADGLAFGAGHGGLEAILITGLSSISLIVYAFAINSGTFEQLLVNGDVKQALL
                     PIQEQLLHTPSYEWMLGGIERISAIAVQIGLSLLVLYAVKNRRPLFLLYSILLHALFN
                     VPAVLYQRGIIEHAAAVEIIVALIAALSVYWIVKAKRVFQ*"
                     /label="yhfC CDS"
     gene            1018099..1018875
                     /gene="yhfC"
                     /locus_tag="BSU_10180"
                     /old_locus_tag="BSU10180"
                     /label="yhfC gene"
     S_feature       complement(1018591..1019212)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1094366_1094987_c"
                     /HighExp="B36, BT, B60, Pyr, S8, G/S, G135, Mal, M/G,
                     Glucon"
                     /AntisenseName="yhfC"
                     /AntisenseCor="-0.12937903461570099"
                     /AntisenseRegPval="-1.5"
                     /CDS_PredictionProba="0.51248700000000003"
                     /TUshortSig="SigK"
                     /TUshortPSig="0.999"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S359"
     S_feature       1018876..1019247
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1094651_1095022"
                     /HighExp="Lbstat, S2, M0t90, M40t90, HiOs, SMMPr, T-2.40H,
                     Etha, Lbtran, Cold"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="0.48518699999999998"
                     /TUshortSig="SigH"
                     /TUshortPSig="0.999"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S360"
     promotor_-10    complement(1019190..1019209)
                     /Source="Nicolas_upshift_promotors"
                     /id="U821"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp="0.999000999001"
                     /psig="0.999000999001"
                     /xcortree=1428
                     /SigmaFactorBS="tattttctacttaaaatatactcttttcccgagggacccGTC
                     CAATCTTttcctatcaatctCTCATATGCTGTAGAGAGCAtgggaagaggagggattt
                     c"
                     /listShort="S359"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(1019211)
                     /Source="Nicolas_upshifts"
                     /id="U821"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp="0.999000999001"
                     /psig="0.999000999001"
                     /xcortree=1428
                     /SigmaFactorBS="tattttctacttaaaatatactcttttcccgagggacccGTC
                     CAATCTTttcctatcaatctCTCATATGCTGTAGAGAGCAtgggaagaggagggattt
                     c"
                     /listShort="S359"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(1019223..1019232)
                     /Source="Nicolas_upshift_promotors"
                     /id="U821"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp="0.999000999001"
                     /psig="0.999000999001"
                     /xcortree=1428
                     /SigmaFactorBS="tattttctacttaaaatatactcttttcccgagggacccGTC
                     CAATCTTttcctatcaatctCTCATATGCTGTAGAGAGCAtgggaagaggagggattt
                     c"
                     /listShort="S359"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-35    1019225..1019232
                     /Source="Nicolas_upshift_promotors"
                     /id="U822"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.78921078921079"
                     /psig="0.96003996003996"
                     /xcortree=2233
                     /SigmaFactorBS="atgctctctacagcatatgagagattgataggaaaaGATTGG
                     ACgggtccctcgggaaAAGAGTATATTTTAAGTAGAaaataaaaggaggaatgcccta
                     t"
                     /listShort="yhfE, yhfF"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    1019247..1019266
                     /Source="Nicolas_upshift_promotors"
                     /id="U822"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.78921078921079"
                     /psig="0.96003996003996"
                     /xcortree=2233
                     /SigmaFactorBS="atgctctctacagcatatgagagattgataggaaaaGATTGG
                     ACgggtccctcgggaaAAGAGTATATTTTAAGTAGAaaataaaaggaggaatgcccta
                     t"
                     /listShort="yhfE, yhfF"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        1019249
                     /Source="Nicolas_upshifts"
                     /id="U822"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.78921078921079"
                     /psig="0.96003996003996"
                     /xcortree=2233
                     /SigmaFactorBS="atgctctctacagcatatgagagattgataggaaaaGATTGG
                     ACgggtccctcgggaaAAGAGTATATTTTAAGTAGAaaataaaaggaggaatgcccta
                     t"
                     /listShort="yhfE, yhfF"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             1019288..1020328
                     /gene="yhfE"
                     /locus_tag="BSU_10200"
                     /old_locus_tag="BSU10200"
                     /EC_number="3.4.11.-"
                     /function="16.11: Scavenge (Catabolism)"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 15713475, 15743956;
                     Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative aminopeptidase"
                     /protein_id="NP_388901.1"
                     /db_xref="EnsemblGenomes-Gn:BSU10200"
                     /db_xref="EnsemblGenomes-Tr:CAB12860"
                     /db_xref="GOA:O07603"
                     /db_xref="InterPro:IPR008007"
                     /db_xref="InterPro:IPR023367"
                     /db_xref="SubtiList:BG13051"
                     /db_xref="UniProtKB/Swiss-Prot:O07603"
                     /translation="MTSVRKTMELIKELVSIPSPTGNTYEVINYIESLLKEWKVETVR
                     NHKGGLIATLPGRDTSRHRMLTAHVDTLGAMVKEIKADGRLKIDLIGGFRYNSIEGEY
                     CQIETASGKMYTGTILMHQTSVHVYKDAGKAERNQENMEIRLDEPVHCRKDTEELGIG
                     VGDFVSFDPRVEITSSGFIKSRHLDDKASVALLLRLIHEIQTEDIELPYTTHFLISNN
                     EEIGYGGNSNIPPETVEYLAVDMGAIGDGQATDEYSVSICVKDASGPYHYQLRKHLVQ
                     LAEKHHIDYKLDIYPYYGSDASAAIKSGHDIVHGLIGPGIDASHAFERTHKSSLRHTA
                     KLLYYYVQSPMV*"
                     /label="yhfE CDS"
     gene            1019288..1020328
                     /gene="yhfE"
                     /locus_tag="BSU_10200"
                     /old_locus_tag="BSU10200"
                     /label="yhfE gene"
     CDS             1020341..1020748
                     /gene="yhfF"
                     /locus_tag="BSU_10210"
                     /old_locus_tag="BSU10210"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 11157739, 14517985;
                     Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative RNA-binding PUA-containing enzyme"
                     /protein_id="NP_388902.1"
                     /db_xref="EnsemblGenomes-Gn:BSU10210"
                     /db_xref="EnsemblGenomes-Tr:CAB12861"
                     /db_xref="InterPro:IPR007374"
                     /db_xref="InterPro:IPR009326"
                     /db_xref="InterPro:IPR015947"
                     /db_xref="SubtiList:BG13052"
                     /db_xref="UniProtKB/Swiss-Prot:O07604"
                     /translation="MKIYKLKSTFGWEGDDGLGEQLIQQILAGEKSATCAPKSLYSKD
                     ELRDVYQTAGQLVTVYDKHDNPRCNIKVTDVFETTFGAPDMRLVKGEGNGDRIEEFQE
                     DHRMAWAELIKSGELELNEDTVLITELFVLVKD*"
                     /label="yhfF CDS"
     gene            1020341..1020748
                     /gene="yhfF"
                     /locus_tag="BSU_10210"
                     /old_locus_tag="BSU10210"
                     /label="yhfF gene"
     downshifts      1020719
                     /Source="Nicolas_upshifts"
                     /id="D554"
                     /incds=0
                     /nref=24
                     /ntot=228
                     /MaxReadThrough="0.87656"
                     /MaxDrop="5.21108"
                     /score="22.0862441"
                     /energy="-20.3"
                     /TU="U822"
                     /idTUdmin="U822"
                     /TUdmin="-23"
                     /isTUend="FALSE"
                     /label="downshifts"
     CDS             complement(1020785..1022074)
                     /gene="gltT"
                     /locus_tag="BSU_10220"
                     /old_locus_tag="BSU10220"
                     /function="16.1: Circulate"
                     /experiment="publication(s) with functional evidences,
                     PMID:8634258, 10588697, 11148213, 15849754, 16850406,
                     17673229, 25344233"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 8634258, 10588697,
                     11148213, 15849754, 16850406, 17673229, 25344233; Product
                     type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="proton/sodium-glutamate (aspartate) symport
                     permease"
                     /protein_id="NP_388903.1"
                     /db_xref="EnsemblGenomes-Gn:BSU10220"
                     /db_xref="EnsemblGenomes-Tr:CAB12862"
                     /db_xref="GOA:O07605"
                     /db_xref="InterPro:IPR001991"
                     /db_xref="InterPro:IPR018107"
                     /db_xref="InterPro:IPR033380"
                     /db_xref="InterPro:IPR036458"
                     /db_xref="SubtiList:BG12595"
                     /db_xref="UniProtKB/Swiss-Prot:O07605"
                     /translation="MKRIKFGLATQIFVGLILGVIVGVIWYGNPALPTYLQPIGDLFL
                     RLIKMIVIPIVVSSLIIGVAGAGNGKQVGKLGFRTILYFEIITTFAIILGLALANIFH
                     PGTGVNIHEAQKSDISQYVETEKEQSNKSVAETFLHIVPTNFFQSLVEGDLLAIICFT
                     VLFALGISAIGERGKPVLAFFEGVSHAMFHVVNLVMKVAPFGVFALIGVTVSKFGLGS
                     LISLGKLVGLVYVALAFFLIVIFGIVAKIAGISIFKFLAYMKDEILLAFSTSSSETVL
                     PRIMEKMEKIGCPKGIVSFVIPIGYTFNLDGSVLYQSIAALFLAQVYGIDLTIWHQIT
                     LVLVLMVTSKGMAAVPGTSFVVLLATLGTIGVPAEGLAFIAGVDRIMDMARTVVNLTG
                     NALAAVVMSKWEGMFNPAKAETVMSQSKTEQNATISG*"
                     /label="gltT CDS"
     gene            complement(1020785..1022074)
                     /gene="gltT"
                     /locus_tag="BSU_10220"
                     /old_locus_tag="BSU10220"
                     /label="gltT gene"
     downshifts      complement(1020815)
                     /Source="Nicolas_upshifts"
                     /id="D555"
                     /incds=0
                     /nref=226
                     /ntot=280
                     /MaxReadThrough="2.99263"
                     /MaxDrop="7.79183"
                     /score="48.7726082"
                     /energy="-21.9"
                     /TU="U823"
                     /idTUdmin="U824"
                     /TUdmin=3
                     /isTUend="TRUE"
                     /label="downshifts"
     S_feature       complement(1022075..1022175)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1097850_1097950_c"
                     /HighExp="C90, LoTm, LBGexp, Cold, UNK1, BC, dia5, Lbexp,
                     S1, T3.0H"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA, SigA"
                     /TUshortPSig="1, 1"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S361"
     promotor_-10    complement(1022174..1022193)
                     /Source="Nicolas_upshift_promotors"
                     /id="U823"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.556443556443556"
                     /psig=1
                     /xcortree=2240
                     /SigmaFactorBS="tctggtgattatcataatgtcATTGAATattctttattttcg
                     AAATATAATTTACTATAGACgaattgatttcttatctattataatttgatctaatagt
                     g"
                     /listShort="S361, gltT"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(1022175)
                     /Source="Nicolas_upshifts"
                     /id="U823"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.556443556443556"
                     /psig=1
                     /xcortree=2240
                     /SigmaFactorBS="tctggtgattatcataatgtcATTGAATattctttattttcg
                     AAATATAATTTACTATAGACgaattgatttcttatctattataatttgatctaatagt
                     g"
                     /listShort="S361, gltT"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     S_feature       complement(1022177..1022313)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1097952_1098088_c"
                     /HighExp="M9-stat, T3.30H, T3.0H, T4.0H, T2.30H, T5.0H,
                     Cold, T2.0H, S0, B60"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig=1
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S362"
     promotor_-35    complement(1022208..1022214)
                     /Source="Nicolas_upshift_promotors"
                     /id="U823"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.556443556443556"
                     /psig=1
                     /xcortree=2240
                     /SigmaFactorBS="tctggtgattatcataatgtcATTGAATattctttattttcg
                     AAATATAATTTACTATAGACgaattgatttcttatctattataatttgatctaatagt
                     g"
                     /listShort="S361, gltT"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             complement(1022345..1022485)
                     /gene="yhfH"
                     /locus_tag="BSU_10230"
                     /old_locus_tag="BSU10230"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved protein of unknown function"
                     /protein_id="NP_388904.1"
                     /db_xref="EnsemblGenomes-Gn:BSU10230"
                     /db_xref="EnsemblGenomes-Tr:CAB12863"
                     /db_xref="InterPro:IPR025432"
                     /db_xref="SubtiList:BG13053"
                     /db_xref="UniProtKB/Swiss-Prot:O07606"
                     /translation="MVMLGKITEFFRNLPSKKCAECGKKIEEQHECYGNICNDCIKVN
                     DL*"
                     /label="yhfH CDS"
     gene            complement(1022345..1022485)
                     /gene="yhfH"
                     /locus_tag="BSU_10230"
                     /old_locus_tag="BSU10230"
                     /label="yhfH gene"
     downshifts      complement(1022358)
                     /Source="Nicolas_upshifts"
                     /id="D556"
                     /incds=0
                     /nref=3
                     /ntot=16
                     /MaxReadThrough="5.70702"
                     /MaxDrop="4.73949"
                     /score="28.7665297"
                     /energy="-13.6"
                     /TU="U824"
                     /idTUdmin="U824"
                     /TUdmin="-1540"
                     /isTUend="FALSE"
                     /label="downshifts"
     promotor_-10    complement(1022504..1022523)
                     /Source="Nicolas_upshift_promotors"
                     /id="U824"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.454545454545455"
                     /psig=1
                     /xcortree=433
                     /SigmaFactorBS="tcttgaaaaaagcatgttttaaacattgtatcaaaacagtTA
                     TTGATTtttgtaatctgtTATATTACAATGAAATCACTacaaaggggaaagagggatt
                     g"
                     /listShort="yhfH, S362, S361, gltT"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(1022523)
                     /Source="Nicolas_upshifts"
                     /id="U824"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.454545454545455"
                     /psig=1
                     /xcortree=433
                     /SigmaFactorBS="tcttgaaaaaagcatgttttaaacattgtatcaaaacagtTA
                     TTGATTtttgtaatctgtTATATTACAATGAAATCACTacaaaggggaaagagggatt
                     g"
                     /listShort="yhfH, S362, S361, gltT"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(1022536..1022543)
                     /Source="Nicolas_upshift_promotors"
                     /id="U824"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.454545454545455"
                     /psig=1
                     /xcortree=433
                     /SigmaFactorBS="tcttgaaaaaagcatgttttaaacattgtatcaaaacagtTA
                     TTGATTtttgtaatctgtTATATTACAATGAAATCACTacaaaggggaaagagggatt
                     g"
                     /listShort="yhfH, S362, S361, gltT"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-35    1022567..1022573
                     /Source="Nicolas_upshift_promotors"
                     /id="U825"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.621378621378621"
                     /psig="0.99100899100899"
                     /xcortree=1999
                     /SigmaFactorBS="tacaaaaatcaataactgttttgatacaatgtttaaaACATG
                     CTtttttcaagaaaaATGGGTATATTGAAGGAGGAccaatttttttgaaaagatagga
                     g"
                     /listShort="yhfI, yhfJ, yhfK"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    1022587..1022606
                     /Source="Nicolas_upshift_promotors"
                     /id="U825"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.621378621378621"
                     /psig="0.99100899100899"
                     /xcortree=1999
                     /SigmaFactorBS="tacaaaaatcaataactgttttgatacaatgtttaaaACATG
                     CTtttttcaagaaaaATGGGTATATTGAAGGAGGAccaatttttttgaaaagatagga
                     g"
                     /listShort="yhfI, yhfJ, yhfK"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        1022590
                     /Source="Nicolas_upshifts"
                     /id="U825"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.621378621378621"
                     /psig="0.99100899100899"
                     /xcortree=1999
                     /SigmaFactorBS="tacaaaaatcaataactgttttgatacaatgtttaaaACATG
                     CTtttttcaagaaaaATGGGTATATTGAAGGAGGAccaatttttttgaaaagatagga
                     g"
                     /listShort="yhfI, yhfJ, yhfK"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             1022637..1023371
                     /gene="yhfI"
                     /locus_tag="BSU_10240"
                     /old_locus_tag="BSU10240"
                     /function="16.8: Protect"
                     /function="16.6: Maintain"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative metal-dependent hydrolase"
                     /protein_id="NP_388905.1"
                     /db_xref="EnsemblGenomes-Gn:BSU10240"
                     /db_xref="EnsemblGenomes-Tr:CAB12864"
                     /db_xref="GOA:O07607"
                     /db_xref="InterPro:IPR001279"
                     /db_xref="InterPro:IPR036866"
                     /db_xref="SubtiList:BG13054"
                     /db_xref="UniProtKB/Swiss-Prot:O07607"
                     /translation="MKVTVIGCYGGFPAANEATSGYLFQSGDYSLLVDCGSAVLSKLF
                     GYVPAEKLDAVVLSHYHHDHIADIGPLQFAKQVGSFLGKGEHTLPIYGHDADIEQFQK
                     LTYKTHTKGIAYQPDQPLTAGPFTITFLKTIHPVTCYAMRITDGSHTVVYTADSSYQD
                     SFIPFSKDADLLISECNFYADQDGTSAGHMNSLEAGRIAKEAGAGELLLTHLPHFGVH
                     DNLRKEAKTVFNGEVNIAKSGFVWEG*"
                     /label="yhfI CDS"
     gene            1022637..1023371
                     /gene="yhfI"
                     /locus_tag="BSU_10240"
                     /old_locus_tag="BSU10240"
                     /label="yhfI gene"
     CDS             1023384..1024379
                     /gene="lplJ"
                     /locus_tag="BSU_10250"
                     /old_locus_tag="BSU10250"
                     /EC_number="6.3.1.20"
                     /experiment="publication(s) with functional evidences,
                     PMID:21338420, 21338421"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 21338420, 21338421;
                     Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="lipoate-protein ligase"
                     /protein_id="NP_388906.1"
                     /db_xref="EnsemblGenomes-Gn:BSU10250"
                     /db_xref="EnsemblGenomes-Tr:CAB12865"
                     /db_xref="GOA:O07608"
                     /db_xref="InterPro:IPR004143"
                     /db_xref="InterPro:IPR004562"
                     /db_xref="InterPro:IPR019491"
                     /db_xref="SubtiList:BG13055"
                     /db_xref="UniProtKB/Swiss-Prot:O07608"
                     /translation="MLFIDNQNINDPRINLAIEEYCVKHLDPEQQYLLFYVNQPSIII
                     GKNQNTIEEINTKYVEENGIIVVRRLSGGGAVYHDLGNLNFSFITKDDGDSFHNFKKF
                     TEPVIQALHQLGVEAELSGRNDIVVDGRKISGNAQFATKGRIFSHGTLMFDSAIDHVV
                     SALKVKKDKIESKGIKSIRSRVANISEFLDDKMTTEEFRSHLLRHIFNTNDVGNVPEY
                     KLTEKDWETIHQISKERYQNWDWNYGRSPKFNLNHSKRYPVGSIDLHLEVKKGKIEDC
                     KIFGDFFGVGDVSEIENLLVGKQYERSVIADVLEGVNLKHYFGNITKEDFLDLIY*"
                     /label="lplJ CDS"
     gene            1023384..1024379
                     /gene="lplJ"
                     /locus_tag="BSU_10250"
                     /old_locus_tag="BSU10250"
                     /label="lplJ gene"
     CDS             1024444..1025088
                     /gene="yhfK"
                     /locus_tag="BSU_10260"
                     /old_locus_tag="BSU10260"
                     /function="16.8: Protect"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 11790741; Product type
                     e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative NAD-binding epimerase / hydratase"
                     /protein_id="NP_388907.1"
                     /db_xref="EnsemblGenomes-Gn:BSU10260"
                     /db_xref="EnsemblGenomes-Tr:CAB12866"
                     /db_xref="GOA:O07609"
                     /db_xref="InterPro:IPR016040"
                     /db_xref="InterPro:IPR036291"
                     /db_xref="SubtiList:BG13056"
                     /db_xref="UniProtKB/Swiss-Prot:O07609"
                     /translation="MKVFLIGANGQIGQRLVSLFQDNPDHSIRAMVRKEEQKASLEAA
                     GAEAVLANLEGSPEEIAAAAKGCDAIIFTAGSGGSTGYDKTLLVDLDGAAKAIEAAAI
                     AGIKRFIMVSALQAHNRENWNEALKPYYVAKHYADKILEASGLTYTIIRPGGLRNEPG
                     TGTVSAAKDLERGFISRDDVAKTVIASLDEKNTENRAFDLTEGDTPIAEALKKL*"
                     /label="yhfK CDS"
     gene            1024444..1025088
                     /gene="yhfK"
                     /locus_tag="BSU_10260"
                     /old_locus_tag="BSU10260"
                     /label="yhfK gene"
     downshifts      1025076
                     /Source="Nicolas_upshifts"
                     /id="D557"
                     /incds=0
                     /nref=239
                     /ntot=258
                     /MaxReadThrough="0.56809"
                     /MaxDrop="6.84076"
                     /score="18.2092404"
                     /energy="-10"
                     /TU="NA"
                     /idTUdmin="U825"
                     /TUdmin=0
                     /isTUend="TRUE"
                     /label="downshifts"
     promotor_-35    1025116..1025119
                     /Source="Nicolas_upshift_promotors"
                     /id="U826"
                     /multdbtbs="SigA"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.619380619380619"
                     /psig=1
                     /xcortree=374
                     /SigmaFactorBS="aactatgacagtactgacactcagggctttttgctCTTGagt
                     gtttttttctgTTTCTCTATAATGGAGAAGAaagcttggcttcaataatgaatgacta
                     t"
                     /listShort="lcfB"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    1025134..1025153
                     /Source="Nicolas_upshift_promotors"
                     /id="U826"
                     /multdbtbs="SigA"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.619380619380619"
                     /psig=1
                     /xcortree=374
                     /SigmaFactorBS="aactatgacagtactgacactcagggctttttgctCTTGagt
                     gtttttttctgTTTCTCTATAATGGAGAAGAaagcttggcttcaataatgaatgacta
                     t"
                     /listShort="lcfB"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        1025141
                     /Source="Nicolas_upshifts"
                     /id="U826"
                     /multdbtbs="SigA"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.619380619380619"
                     /psig=1
                     /xcortree=374
                     /SigmaFactorBS="aactatgacagtactgacactcagggctttttgctCTTGagt
                     gtttttttctgTTTCTCTATAATGGAGAAGAaagcttggcttcaataatgaatgacta
                     t"
                     /listShort="lcfB"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             1025205..1026746
                     /gene="lcfB"
                     /locus_tag="BSU_10270"
                     /old_locus_tag="BSU10270"
                     /EC_number="6.2.1.3"
                     /function="16.11: Scavenge (Catabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:17189250, 21398533"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 17189250, 21398533;
                     Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="long-chain fatty-acid-CoA ligase (degradative)"
                     /protein_id="NP_388908.2"
                     /db_xref="EnsemblGenomes-Gn:BSU10270"
                     /db_xref="EnsemblGenomes-Tr:CAB12867"
                     /db_xref="GOA:O07610"
                     /db_xref="InterPro:IPR000873"
                     /db_xref="InterPro:IPR020459"
                     /db_xref="InterPro:IPR020845"
                     /db_xref="InterPro:IPR025110"
                     /db_xref="SubtiList:BG13057"
                     /db_xref="UniProtKB/Swiss-Prot:O07610"
                     /translation="MNLVSKLEETASEKPDSIACRFKDHMMTYQELNEYIQRFADGLQ
                     EAGMEKGDHLALLLGNSPDFIIAFFGALKAGIVVVPINPLYTPTEIGYMLTNGDVKAI
                     VGVSQLLPLYESMHESLPKVELVILCQTGEAEPEAADPEVRMKMTTFAKILRPTSAAK
                     QNQEPVPDDTAVILYTSGTTGKPKGAMLTHQNLYSNANDVAGYLGMDERDNVVCALPM
                     FHVFCLTVCMNAPLMSGATVLIEPQFSPASVFKLVKQQQATIFAGVPTMYNYLFQHEN
                     GKKDDFSSIRLCISGGASMPVALLTAFEEKFGVTILEGYGLSEASPVTCFNPFDRGRK
                     PGSIGTSILHVENKVVDPLGRELPAHQVGELIVKGPNVMKGYYKMPMETEHALKDGWL
                     YTGDLARRDEDGYFYIVDRKKDMIIVGGYNVYPREVEEVLYSHPDVKEAVVIGVPDPQ
                     SGEAVKGYVVPKRSGVTEEDIMQHCEKHLAKYKRPAAITFLDDIPKNATGKMLRRALR
                     DILPQ*"
                     /label="lcfB CDS"
     gene            1025205..1026746
                     /gene="lcfB"
                     /locus_tag="BSU_10270"
                     /old_locus_tag="BSU10270"
                     /label="lcfB gene"
     downshifts      1026726
                     /Source="Nicolas_upshifts"
                     /id="D558"
                     /incds=0
                     /nref=5
                     /ntot=108
                     /MaxReadThrough="2.74134"
                     /MaxDrop="3.72638"
                     /score="15.3712924"
                     /energy="-10.4"
                     /TU="NA"
                     /idTUdmin="U826"
                     /TUdmin=0
                     /isTUend="TRUE"
                     /label="downshifts"
     CDS             complement(1026785..1027180)
                     /gene="yhfM"
                     /locus_tag="BSU_10280"
                     /old_locus_tag="BSU10280"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms; Product type m: membrane component"
                     /codon_start=1
                     /transl_table=11
                     /product="putative membrane protein"
                     /protein_id="NP_388909.1"
                     /db_xref="EnsemblGenomes-Gn:BSU10280"
                     /db_xref="EnsemblGenomes-Tr:CAB12868"
                     /db_xref="SubtiList:BG13058"
                     /db_xref="UniProtKB/Swiss-Prot:O07611"
                     /translation="MKKIVAAIVVIGLVFIAFFYLYSRSGDVYQSVDADLITLSSSGQ
                     EDIEIEKRQHVKDMLDIMNQGKQVKTEKTSAPDYEGTIKFHKDRYDSFRLWIDGSQQA
                     VFLKDGTYYKLSKNDTKALLNIIKKEAKD*"
                     /label="yhfM CDS"
     gene            complement(1026785..1027180)
                     /gene="yhfM"
                     /locus_tag="BSU_10280"
                     /old_locus_tag="BSU10280"
                     /label="yhfM gene"
     downshifts      complement(1026802)
                     /Source="Nicolas_upshifts"
                     /id="D559"
                     /incds=0
                     /nref=46
                     /ntot=89
                     /MaxReadThrough="0.75539"
                     /MaxDrop="6.88759"
                     /score="17.4775611"
                     /energy="-10.4"
                     /TU="NA"
                     /idTUdmin="U827"
                     /TUdmin=0
                     /isTUend="TRUE"
                     /label="downshifts"
     promotor_-10    complement(1027200..1027211)
                     /Source="Nicolas_upshift_promotors"
                     /id="U827"
                     /multdbtbs="SigF"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp=1
                     /psig=1
                     /xcortree=1141
                     /SigmaFactorBS="caagctgtgttccgcacttttccacccttttaAGCATGGaaa
                     ccccgatcgctGGGAAAACTAACaatgtttggagtgatgcaaatgaaaaaaatagtgg
                     c"
                     /listShort="yhfM"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(1027204)
                     /Source="Nicolas_upshifts"
                     /id="U827"
                     /multdbtbs="SigF"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp=1
                     /psig=1
                     /xcortree=1141
                     /SigmaFactorBS="caagctgtgttccgcacttttccacccttttaAGCATGGaaa
                     ccccgatcgctGGGAAAACTAACaatgtttggagtgatgcaaatgaaaaaaatagtgg
                     c"
                     /listShort="yhfM"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(1027226..1027232)
                     /Source="Nicolas_upshift_promotors"
                     /id="U827"
                     /multdbtbs="SigF"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp=1
                     /psig=1
                     /xcortree=1141
                     /SigmaFactorBS="caagctgtgttccgcacttttccacccttttaAGCATGGaaa
                     ccccgatcgctGGGAAAACTAACaatgtttggagtgatgcaaatgaaaaaaatagtgg
                     c"
                     /listShort="yhfM"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-35    1027265..1027268
                     /Source="Nicolas_upshift_promotors"
                     /id="U828"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.635364635364635"
                     /psig="0.785214785214785"
                     /xcortree=1404
                     /SigmaFactorBS="atcggggtttccatgcttaaaagggtggaaaagtgcggaaca
                     cagcttgGTTCtaagaatttgaattTATGATTACAATAGAAGTAAcgggttgatgtga
                     g"
                     /listShort="yhfN"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     upshifts        1027276
                     /Source="Nicolas_upshifts"
                     /id="U828"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.635364635364635"
                     /psig="0.785214785214785"
                     /xcortree=1404
                     /SigmaFactorBS="atcggggtttccatgcttaaaagggtggaaaagtgcggaaca
                     cagcttgGTTCtaagaatttgaattTATGATTACAATAGAAGTAAcgggttgatgtga
                     g"
                     /listShort="yhfN"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-10    1027283..1027302
                     /Source="Nicolas_upshift_promotors"
                     /id="U828"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.635364635364635"
                     /psig="0.785214785214785"
                     /xcortree=1404
                     /SigmaFactorBS="atcggggtttccatgcttaaaagggtggaaaagtgcggaaca
                     cagcttgGTTCtaagaatttgaattTATGATTACAATAGAAGTAAcgggttgatgtga
                     g"
                     /listShort="yhfN"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     CDS             1027329..1028609
                     /gene="yhfN"
                     /locus_tag="BSU_10290"
                     /old_locus_tag="BSU10290"
                     /EC_number="3.4.24.84"
                     /function="16.6: Maintain"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 9015299; Product type
                     e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative membrane metalloprotease"
                     /protein_id="NP_388910.1"
                     /db_xref="EnsemblGenomes-Gn:BSU10290"
                     /db_xref="EnsemblGenomes-Tr:CAB12869"
                     /db_xref="GOA:P40769"
                     /db_xref="InterPro:IPR001915"
                     /db_xref="InterPro:IPR027057"
                     /db_xref="InterPro:IPR032456"
                     /db_xref="SubtiList:BG11029"
                     /db_xref="UniProtKB/Swiss-Prot:P40769"
                     /translation="MRKWIAAAGLAYVLYGLFFYWYFFLSGDSAIPEAVKGTQADPAS
                     FMKPSELAVAEQYSNVKNFLFFIGVPLDWFLFFVLLVSGVSKKIKKWIEAAVPFRFLQ
                     TVGFVFVLSLITTLVTLPLDWIGYQVSLDYNISTQTTASWAKDQVISFWISFPIFTLC
                     VLVFYWLIKRHEKKWWLYAWLLTVPFSLFLFFIQPVIIDPLYNDFYPLKNKELESKIL
                     ELADEANIPADHVYEVNMSEKTNALNAYVTGIGANKRIVLWDTTLNKLDDSEILFIMG
                     HEMGHYVMKHVYIGLAGYLLVSLAGFYVIDKLYKRTVRLTRSMFHLEGRHDLAALPLL
                     LLLFSVLSFAVTPFSNAVSRYQENKADQYGIELTENREAAVKTFQDLAVTGLSQVDPP
                     VLVKIFRGSHPSIMERIQHAEKEENAPEHQDADK*"
                     /label="yhfN CDS"
     gene            1027329..1028609
                     /gene="yhfN"
                     /locus_tag="BSU_10290"
                     /old_locus_tag="BSU10290"
                     /label="yhfN gene"
     promotor_-10    complement(1027756..1027775)
                     /Source="Nicolas_upshift_promotors"
                     /id="U829"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.574425574425574"
                     /psig="0.974025974025974"
                     /xcortree=1821
                     /SigmaFactorBS="tcagccaataaaaaacgagaacgcaaagcgtaaaGATTGGaa
                     agctgatccaaaaGCTGATAACCTGATCCTTAGcccagctggccgttgtctgtgtgga
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(1027770)
                     /Source="Nicolas_upshifts"
                     /id="U829"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.574425574425574"
                     /psig="0.974025974025974"
                     /xcortree=1821
                     /SigmaFactorBS="tcagccaataaaaaacgagaacgcaaagcgtaaaGATTGGaa
                     agctgatccaaaaGCTGATAACCTGATCCTTAGcccagctggccgttgtctgtgtgga
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(1027791..1027796)
                     /Source="Nicolas_upshift_promotors"
                     /id="U829"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.574425574425574"
                     /psig="0.974025974025974"
                     /xcortree=1821
                     /SigmaFactorBS="tcagccaataaaaaacgagaacgcaaagcgtaaaGATTGGaa
                     agctgatccaaaaGCTGATAACCTGATCCTTAGcccagctggccgttgtctgtgtgga
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     downshifts      1028596
                     /Source="Nicolas_upshifts"
                     /id="D560"
                     /incds=0
                     /nref=2
                     /ntot=57
                     /MaxReadThrough="3.82026"
                     /MaxDrop="3.6342"
                     /score="6.45541384"
                     /energy="-12.7"
                     /TU="U828"
                     /idTUdmin="U828"
                     /TUdmin="-132"
                     /isTUend="FALSE"
                     /label="downshifts"
     downshifts      complement(1028646)
                     /Source="Nicolas_upshifts"
                     /id="D561"
                     /incds=0
                     /nref=129
                     /ntot=219
                     /MaxReadThrough="-0.11848"
                     /MaxDrop="9.02627"
                     /score="-6.76069514"
                     /energy="-7.8"
                     /TU="NA"
                     /idTUdmin="U830"
                     /TUdmin=4
                     /isTUend="TRUE"
                     /label="downshifts"
     CDS             complement(1028648..1029793)
                     /gene="aprE"
                     /locus_tag="BSU_10300"
                     /old_locus_tag="BSU10300"
                     /EC_number="3.4.21.62"
                     /function="16.11: Scavenge (Catabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:3108260, 9811547, 12950930, 14688235, 15205417,
                     17666034, 19710937, 26728191"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 3108260, 9811547,
                     12950930, 14688235, 15205417, 17666034, 19710937,
                     26728191; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="serine alkaline protease (Ca(2+)-dependent
                     subtilisin E)"
                     /protein_id="NP_388911.2"
                     /db_xref="EnsemblGenomes-Gn:BSU10300"
                     /db_xref="EnsemblGenomes-Tr:CAB12870"
                     /db_xref="GOA:P04189"
                     /db_xref="InterPro:IPR000209"
                     /db_xref="InterPro:IPR009020"
                     /db_xref="InterPro:IPR010259"
                     /db_xref="InterPro:IPR015500"
                     /db_xref="InterPro:IPR022398"
                     /db_xref="InterPro:IPR023827"
                     /db_xref="InterPro:IPR023828"
                     /db_xref="InterPro:IPR034202"
                     /db_xref="InterPro:IPR036852"
                     /db_xref="InterPro:IPR037045"
                     /db_xref="PDB:1SCJ"
                     /db_xref="PDB:3WHI"
                     /db_xref="SubtiList:BG10190"
                     /db_xref="UniProtKB/Swiss-Prot:P04189"
                     /translation="MRSKKLWISLLFALTLIFTMAFSNMSAQAAGKSSTEKKYIVGFK
                     QTMSAMSSAKKKDVISEKGGKVQKQFKYVNAAAATLDEKAVKELKKDPSVAYVEEDHI
                     AHEYAQSVPYGISQIKAPALHSQGYTGSNVKVAVIDSGIDSSHPDLNVRGGASFVPSE
                     TNPYQDGSSHGTHVAGTIAALNNSIGVLGVAPSASLYAVKVLDSTGSGQYSWIINGIE
                     WAISNNMDVINMSLGGPTGSTALKTVVDKAVSSGIVVAAAAGNEGSSGSTSTVGYPAK
                     YPSTIAVGAVNSSNQRASFSSAGSELDVMAPGVSIQSTLPGGTYGAYNGTSMATPHVA
                     GAAALILSKHPTWTNAQVRDRLESTATYLGNSFYYGKGLINVQAAAQ*"
                     /label="aprE CDS"
     gene            complement(1028648..1029793)
                     /gene="aprE"
                     /locus_tag="BSU_10300"
                     /old_locus_tag="BSU10300"
                     /label="aprE gene"
     S_feature       complement(1029794..1029860)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1105569_1105635_c"
                     /HighExp="BC, T5.0H, LoTm, Sw, T4.0H, T3.30H, S1, T3.0H,
                     S2, M9-stat"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.996"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S363"
     promotor_-10    complement(1029849..1029868)
                     /Source="Nicolas_upshift_promotors"
                     /id="U830"
                     /multdbtbs="SigA"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.524475524475524"
                     /psig="0.996003996003996"
                     /xcortree=468
                     /SigmaFactorBS="atacctaaatagagataaaatcatctcaaaaaaatgggTCTA
                     CtaaaatattattccaTCTATTACAATAAATTCACAgaatagtcttttaagtaagtct
                     a"
                     /listShort="S363, aprE"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(1029866)
                     /Source="Nicolas_upshifts"
                     /id="U830"
                     /multdbtbs="SigA"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.524475524475524"
                     /psig="0.996003996003996"
                     /xcortree=468
                     /SigmaFactorBS="atacctaaatagagataaaatcatctcaaaaaaatgggTCTA
                     CtaaaatattattccaTCTATTACAATAAATTCACAgaatagtcttttaagtaagtct
                     a"
                     /listShort="S363, aprE"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(1029884..1029888)
                     /Source="Nicolas_upshift_promotors"
                     /id="U830"
                     /multdbtbs="SigA"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.524475524475524"
                     /psig="0.996003996003996"
                     /xcortree=468
                     /SigmaFactorBS="atacctaaatagagataaaatcatctcaaaaaaatgggTCTA
                     CtaaaatattattccaTCTATTACAATAAATTCACAgaatagtcttttaagtaagtct
                     a"
                     /listShort="S363, aprE"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-35    1030173..1030180
                     /Source="Nicolas_upshift_promotors"
                     /id="U831"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.854145854145854"
                     /psig="0.983016983016983"
                     /xcortree=2175
                     /SigmaFactorBS="ttcaaagcatgatgataaaagtattctgaaaaataaACTTTA
                     CAgaaaagggatagaaTGAAAAAATTATTGAGAGGGaggaagaaataagatgaacatt
                     c"
                     /listShort="yhfO, yhfP, S364"
                     /listLong="yhfQ"
                     /label="promotor_-35"
     promotor_-10    1030195..1030214
                     /Source="Nicolas_upshift_promotors"
                     /id="U831"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.854145854145854"
                     /psig="0.983016983016983"
                     /xcortree=2175
                     /SigmaFactorBS="ttcaaagcatgatgataaaagtattctgaaaaataaACTTTA
                     CAgaaaagggatagaaTGAAAAAATTATTGAGAGGGaggaagaaataagatgaacatt
                     c"
                     /listShort="yhfO, yhfP, S364"
                     /listLong="yhfQ"
                     /label="promotor_-10"
     upshifts        1030197
                     /Source="Nicolas_upshifts"
                     /id="U831"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.854145854145854"
                     /psig="0.983016983016983"
                     /xcortree=2175
                     /SigmaFactorBS="ttcaaagcatgatgataaaagtattctgaaaaataaACTTTA
                     CAgaaaagggatagaaTGAAAAAATTATTGAGAGGGaggaagaaataagatgaacatt
                     c"
                     /listShort="yhfO, yhfP, S364"
                     /listLong="yhfQ"
                     /label="upshifts"
     CDS             1030228..1030677
                     /gene="yhfO"
                     /locus_tag="BSU_10310"
                     /old_locus_tag="BSU10310"
                     /EC_number="2.3.1.-"
                     /function="16.6: Maintain"
                     /function="16.8: Protect"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 11717295; Product type
                     e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative N-acetyltransferase"
                     /protein_id="NP_388912.1"
                     /db_xref="EnsemblGenomes-Gn:BSU10310"
                     /db_xref="EnsemblGenomes-Tr:CAB12871"
                     /db_xref="GOA:O07614"
                     /db_xref="InterPro:IPR000182"
                     /db_xref="InterPro:IPR016181"
                     /db_xref="SubtiList:BG13059"
                     /db_xref="UniProtKB/Swiss-Prot:O07614"
                     /translation="MNIRQAKTSDAAAIAPLFNQYREFYRQASDLQGAEAFLKARLEN
                     HESVILIAEENGEFIGFTQLYPTFSSVSMKRIYILNDLFVVPHARTKGAGGRLLSAAK
                     DYAGQNGAKCLTLQTEHHNRKARSLYEQNGYEEDTGFVHYCLNVPAK*"
                     /label="yhfO CDS"
     gene            1030228..1030677
                     /gene="yhfO"
                     /locus_tag="BSU_10310"
                     /old_locus_tag="BSU10310"
                     /label="yhfO gene"
     promotor_-35    1030693..1030700
                     /Source="Nicolas_upshift_promotors"
                     /id="U832"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.95004995004995"
                     /psig=1
                     /xcortree=2061
                     /SigmaFactorBS="tgtgccggcgaagtgaaaatggcggcttgatGATTTGGTttt
                     ttgaacgttctTCGGTTACGATATAAATGAAaaggagtgtgccgaatgtcaacgttat
                     t"
                     /listShort="yhfP, S364, yhfQ"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    1030715..1030734
                     /Source="Nicolas_upshift_promotors"
                     /id="U832"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.95004995004995"
                     /psig=1
                     /xcortree=2061
                     /SigmaFactorBS="tgtgccggcgaagtgaaaatggcggcttgatGATTTGGTttt
                     ttgaacgttctTCGGTTACGATATAAATGAAaaggagtgtgccgaatgtcaacgttat
                     t"
                     /listShort="yhfP, S364, yhfQ"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        1030722
                     /Source="Nicolas_upshifts"
                     /id="U832"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.95004995004995"
                     /psig=1
                     /xcortree=2061
                     /SigmaFactorBS="tgtgccggcgaagtgaaaatggcggcttgatGATTTGGTttt
                     ttgaacgttctTCGGTTACGATATAAATGAAaaggagtgtgccgaatgtcaacgttat
                     t"
                     /listShort="yhfP, S364, yhfQ"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             1030749..1031741
                     /gene="yhfP"
                     /locus_tag="BSU_10320"
                     /old_locus_tag="BSU10320"
                     /EC_number="1.-.-.-"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 9643546, 12057962;
                     Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative oxidoreductase"
                     /protein_id="NP_388913.1"
                     /db_xref="EnsemblGenomes-Gn:BSU10320"
                     /db_xref="EnsemblGenomes-Tr:CAB12872"
                     /db_xref="GOA:O07615"
                     /db_xref="InterPro:IPR011032"
                     /db_xref="InterPro:IPR013149"
                     /db_xref="InterPro:IPR013154"
                     /db_xref="InterPro:IPR014188"
                     /db_xref="InterPro:IPR020843"
                     /db_xref="InterPro:IPR036291"
                     /db_xref="PDB:1TT7"
                     /db_xref="PDB:1Y9E"
                     /db_xref="SubtiList:BG13060"
                     /db_xref="UniProtKB/Swiss-Prot:O07615"
                     /translation="MSTLFQALQAEKNADDVSVHVKTISTEDLPKDGVLIKVAYSGIN
                     YKDGLAGKAGGNIVREYPLILGIDAAGTVVSSNDPRFAEGDEVIATSYELGVSRDGGL
                     SEYASVPGDWLVPLPQNLSLKEAMVYGTAGFTAALSVHRLEQNGLSPEKGSVLVTGAT
                     GGVGGIAVSMLNKRGYDVVASTGNREAADYLKQLGASEVISREDVYDGTLKALSKQQW
                     QGAVDPVGGKQLASLLSKIQYGGSVAVSGLTGGGEVPATVYPFILRGVSLLGIDSVYC
                     PMDVRAAVWERMSSDLKPDQLLTIVDREVSLEETPGALKDILQNRIQGRVIVKL*"
                     /label="yhfP CDS"
     gene            1030749..1031741
                     /gene="yhfP"
                     /locus_tag="BSU_10320"
                     /old_locus_tag="BSU10320"
                     /label="yhfP gene"
     downshifts      1031742
                     /Source="Nicolas_upshifts"
                     /id="D562"
                     /incds=0
                     /nref=1
                     /ntot=37
                     /MaxReadThrough="4.4421"
                     /MaxDrop="2.9095"
                     /score="14.183693"
                     /energy="-15.3"
                     /TU="U831,U832"
                     /idTUdmin="U831"
                     /TUdmin="-154"
                     /isTUend="FALSE"
                     /label="downshifts"
     S_feature       1031787..1031897
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1107562_1107672"
                     /HighExp="Etha, dia15, LoTm, Salt, H2O2, LBGexp, Diami,
                     Paraq, dia5, Lbexp"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA, SigA"
                     /TUshortPSig="1, 0.983"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S364"
     promotor_-35    1031875..1031882
                     /Source="Nicolas_upshift_promotors"
                     /id="U833"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.76023976023976"
                     /psig=1
                     /xcortree=2107
                     /SigmaFactorBS="gtaagccgaactttctcttctcattttaaaaataatTGGTGA
                     TAatgattctcattccgTGTTATACTACTCTTGGACAtcttaaccatagaaactacca
                     a"
                     /listShort="yhfQ"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    1031898..1031917
                     /Source="Nicolas_upshift_promotors"
                     /id="U833"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.76023976023976"
                     /psig=1
                     /xcortree=2107
                     /SigmaFactorBS="gtaagccgaactttctcttctcattttaaaaataatTGGTGA
                     TAatgattctcattccgTGTTATACTACTCTTGGACAtcttaaccatagaaactacca
                     a"
                     /listShort="yhfQ"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        1031899
                     /Source="Nicolas_upshifts"
                     /id="U833"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.76023976023976"
                     /psig=1
                     /xcortree=2107
                     /SigmaFactorBS="gtaagccgaactttctcttctcattttaaaaataatTGGTGA
                     TAatgattctcattccgTGTTATACTACTCTTGGACAtcttaaccatagaaactacca
                     a"
                     /listShort="yhfQ"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             1031958..1032929
                     /gene="yhfQ"
                     /locus_tag="BSU_10330"
                     /old_locus_tag="BSU10330"
                     /function="16.1: Circulate"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 2a: Function from experimental evidences
                     in other organisms; PubMedId: 12354229, 16672620,
                     20147287; Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="iron(III) siderophore-binding lipoprotein"
                     /protein_id="NP_388914.2"
                     /db_xref="EnsemblGenomes-Gn:BSU10330"
                     /db_xref="EnsemblGenomes-Tr:CAB12873"
                     /db_xref="GOA:C0SP94"
                     /db_xref="InterPro:IPR002491"
                     /db_xref="SubtiList:BG13061"
                     /db_xref="UniProtKB/Swiss-Prot:C0SP94"
                     /translation="MKKTLIILTVLLLSVLTAACSSSSGNQNSKEHKVAVTHDLGKTN
                     VPEHPKRVVVLELGFIDTLLDLGITPVGVADDNKAKQLINKDVLKKIDGYTSVGTRSQ
                     PSMEKIASLKPDLIIADTTRHKKVYDQLKKIAPTIALNNLNADYQDTIDASLTIAKAV
                     GKEKEMEKKLTAHEEKLSETKQKISANSQSVLLIGNTNDTIMARDENFFTSRLLTQVG
                     YRYAISTSGNSDSSNGGDSVNMKMTLEQLLKTDPDVIILMTGKTDDLDADGKRPIEKN
                     VLWKKLKAVKNGHVYHVDRAVWSLRRSVDGANAILDELQKEMPAAKK*"
                     /label="yhfQ CDS"
     gene            1031958..1032929
                     /gene="yhfQ"
                     /locus_tag="BSU_10330"
                     /old_locus_tag="BSU10330"
                     /label="yhfQ gene"
     downshifts      1032908
                     /Source="Nicolas_upshifts"
                     /id="D563"
                     /incds=0
                     /nref=172
                     /ntot=251
                     /MaxReadThrough="2.22013"
                     /MaxDrop="5.6726"
                     /score="27.9181244"
                     /energy="-10.9"
                     /TU="NA"
                     /idTUdmin="U833"
                     /TUdmin=0
                     /isTUend="TRUE"
                     /label="downshifts"
     CDS             complement(1032961..1033542)
                     /gene="phoE"
                     /locus_tag="BSU_10340"
                     /old_locus_tag="BSU10340"
                     /EC_number="3.1.3.-"
                     /function="16.11: Scavenge (Catabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:10869096, 11827481, 12870714, 17693564"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 10869096, 11827481,
                     12870714, 17693564; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="promiscuous phosphatase; putative
                     (phosphoglycerate) mutase"
                     /protein_id="NP_388915.1"
                     /db_xref="EnsemblGenomes-Gn:BSU10340"
                     /db_xref="EnsemblGenomes-Tr:CAB12874"
                     /db_xref="GOA:O07617"
                     /db_xref="InterPro:IPR001345"
                     /db_xref="InterPro:IPR013078"
                     /db_xref="InterPro:IPR029033"
                     /db_xref="SubtiList:BG13062"
                     /db_xref="UniProtKB/Swiss-Prot:O07617"
                     /translation="MTAVCLVRHGETDWNLQQKCQGKTDIPLNATGERQARETGEYVK
                     DFSWDIIVTSPLKRAKRTAEIINEYLHLPIVEMDDFKERDYGDAEGMPLEERTKRYPD
                     NIYPNMETLEELTDRLMGGLAKVNQAYPNKKVLIVAHGAAIHALLTEISGGDPELQST
                     RLVNACLSNIEFAEEKWRIKDYNINSHLSGFIK*"
                     /label="phoE CDS"
     gene            complement(1032961..1033542)
                     /gene="phoE"
                     /locus_tag="BSU_10340"
                     /old_locus_tag="BSU10340"
                     /label="phoE gene"
     downshifts      complement(1032984)
                     /Source="Nicolas_upshifts"
                     /id="D564"
                     /incds=0
                     /nref=218
                     /ntot=256
                     /MaxReadThrough="1.23197"
                     /MaxDrop="6.359"
                     /score="28.9228703"
                     /energy="-10.9"
                     /TU="NA"
                     /idTUdmin="U834"
                     /TUdmin=0
                     /isTUend="TRUE"
                     /label="downshifts"
     promotor_-10    complement(1033566..1033585)
                     /Source="Nicolas_upshift_promotors"
                     /id="U834"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.370629370629371"
                     /psig="0.998001998001998"
                     /xcortree=1973
                     /SigmaFactorBS="ctttattatttgaagttcttgcataggctttttcATAGgaca
                     cacgctttcgaTTTAGTATAATAGCGATATGaataaagtcaggaaggggattttatga
                     c"
                     /listShort="phoE"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(1033578)
                     /Source="Nicolas_upshifts"
                     /id="U834"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.370629370629371"
                     /psig="0.998001998001998"
                     /xcortree=1973
                     /SigmaFactorBS="ctttattatttgaagttcttgcataggctttttcATAGgaca
                     cacgctttcgaTTTAGTATAATAGCGATATGaataaagtcaggaaggggattttatga
                     c"
                     /listShort="phoE"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(1033601..1033604)
                     /Source="Nicolas_upshift_promotors"
                     /id="U834"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.370629370629371"
                     /psig="0.998001998001998"
                     /xcortree=1973
                     /SigmaFactorBS="ctttattatttgaagttcttgcataggctttttcATAGgaca
                     cacgctttcgaTTTAGTATAATAGCGATATGaataaagtcaggaaggggattttatga
                     c"
                     /listShort="phoE"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             complement(1033613..1034707)
                     /gene="yhfS"
                     /locus_tag="BSU_10350"
                     /old_locus_tag="BSU10350"
                     /EC_number="2.3.1.9"
                     /experiment="publication(s) with functional evidences,
                     PMID:12368242, 23840410"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 12368242, 23840410;
                     Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA C-acetyltransferase"
                     /protein_id="NP_388916.1"
                     /db_xref="EnsemblGenomes-Gn:BSU10350"
                     /db_xref="EnsemblGenomes-Tr:CAB12875"
                     /db_xref="GOA:O07618"
                     /db_xref="InterPro:IPR002155"
                     /db_xref="InterPro:IPR016039"
                     /db_xref="InterPro:IPR020613"
                     /db_xref="InterPro:IPR020616"
                     /db_xref="InterPro:IPR020617"
                     /db_xref="SubtiList:BG13063"
                     /db_xref="UniProtKB/Swiss-Prot:O07618"
                     /translation="MNAVIVDAKRTIFGNQNGLLKPFLPEDLAAPIIRCLSRKLEDQV
                     DEVILGNATGRGGNLARLSALQAGLPLSVPGMTIDRQCGSGLEAVRYACSLIQAGAGT
                     MYIAGGSESSSQSPFSERARFSPDAIGDPDMGIAAEYTAARYSISRSMQDEYALLSHQ
                     RSRNAHDEGFYREEVVALGELETDEAFLKTRPIEAIIPRAKPVFDTSSGTVTAANSSG
                     IADGAAALLVMEEEKAAALGLKPVLRFIGSAVSGIHPNFPPAAPVVAIRQLLHTHDVT
                     PDDIDLFEINEAFAVKICVCSQELGIPFSKINVRGGALALGHPYGASGAALVTRLFYE
                     AKRRPDCQYAVAAIGSGGGIGLALLFEVLA*"
                     /label="yhfS CDS"
     gene            complement(1033613..1034707)
                     /gene="yhfS"
                     /locus_tag="BSU_10350"
                     /old_locus_tag="BSU10350"
                     /label="yhfS gene"
     CDS             complement(1034704..1036143)
                     /gene="yhfT"
                     /locus_tag="BSU_10360"
                     /old_locus_tag="BSU10360"
                     /EC_number="6.2.1.-"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 12368242, 28032445,
                     28414710; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative long-chain fatty-acid-CoA ligase
                     (proofreading for biotin synthesis)"
                     /protein_id="NP_388917.1"
                     /db_xref="EnsemblGenomes-Gn:BSU10360"
                     /db_xref="EnsemblGenomes-Tr:CAB12876"
                     /db_xref="GOA:O07619"
                     /db_xref="InterPro:IPR000873"
                     /db_xref="InterPro:IPR020845"
                     /db_xref="InterPro:IPR025110"
                     /db_xref="SubtiList:BG13064"
                     /db_xref="UniProtKB/Swiss-Prot:O07619"
                     /translation="MTITHTYSSTAETSPGRVAIQTESEQITYHDWDRLVSQTANWLR
                     SQPSMPNRVAILLPNSLAFLQLFAGAAAAGCTAIPIDTRWSPAECKERLSISNADLVV
                     TLAFFKNKLTDSQTPVVLLDNCMADISEAAADPLPTIDPEHPFYMGFTSGSTGKPKAF
                     TRSHRSWMESFTCTETDFSISSDDKVLIPGALMSSHFLYGAVSTLFLGGTVCLLKKFS
                     PAKAKEWLCRESISVLYTVPTMTDALARIEGFPDSPVKIISSGADWPAESKKKLAAAW
                     PHLKLYDFYGTSELSFVTFSSPEDSKRKPHSAGRPFHNVRIEIRNAGGERCQPGEIGK
                     IFVKSPMRFSGYVNGSTPDEWMTVDDMGYVDEEGFLYISGRENGMIVYGGLNIFPEEI
                     ERVLLACPEVESAAVVGIPDEYWGEIAVAVILGNANARTLKAWCKQKLASYKIPKKWV
                     FADSLPETSSGKIARSRVKKWLEESVQYK*"
                     /label="yhfT CDS"
     gene            complement(1034704..1036143)
                     /gene="yhfT"
                     /locus_tag="BSU_10360"
                     /old_locus_tag="BSU10360"
                     /label="yhfT gene"
     CDS             complement(1036150..1036710)
                     /gene="bioY"
                     /locus_tag="BSU_10370"
                     /old_locus_tag="BSU10370"
                     /function="16.1: Circulate"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 2a: Function from experimental evidences
                     in other organisms; PubMedId: 12368242, 15849754,
                     16850406, 18931129, 23709504; Product type t :
                     transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="biotin transporter"
                     /protein_id="NP_388918.1"
                     /db_xref="EnsemblGenomes-Gn:BSU10370"
                     /db_xref="EnsemblGenomes-Tr:CAB12877"
                     /db_xref="GOA:O07620"
                     /db_xref="InterPro:IPR003784"
                     /db_xref="SubtiList:BG13065"
                     /db_xref="UniProtKB/Swiss-Prot:O07620"
                     /translation="MLKLIDMMHIAIFTALMAVLGFMPPLFLSFTPVPITLQTLGVML
                     AGSILRPKSAFLSQLVFLLLVAFGAPLLPGGRGGFGVFFGPSAGFLIAYPLASWLISL
                     AANRLRKVTVLRLFFTHIVFGIIFIYLLGIPVQAFIMHIDLSQAAFMSLAYVPGDLIK
                     AAVSAFLAIKITQALSLSDTMFTKGG*"
                     /label="bioY CDS"
     gene            complement(1036150..1036710)
                     /gene="bioY"
                     /locus_tag="BSU_10370"
                     /old_locus_tag="BSU10370"
                     /label="bioY gene"
     misc_feature    complement(1036160..1036179)
                     /Source="Nicolas_upshift_promotors"
                     /id="U835"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.585414585414585"
                     /psig="0.97902097902098"
                     /xcortree=2231
                     /SigmaFactorBS="aaaagcggctgtatctgcatttctggcgataaaaatcactca
                     agccttgtctcttTCTGATACGATGTTTACAAAaggaggatgacaatacatgacaatt
                     a"
                     /listShort="yhfT, yhfS, phoE"
                     /GFF_Attribute="listLong"
                     /label="promotor_single_box"
                     /note="Geneious type: promotor_single_box"
     upshifts        complement(1036174)
                     /Source="Nicolas_upshifts"
                     /id="U835"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.585414585414585"
                     /psig="0.97902097902098"
                     /xcortree=2231
                     /SigmaFactorBS="aaaagcggctgtatctgcatttctggcgataaaaatcactca
                     agccttgtctcttTCTGATACGATGTTTACAAAaggaggatgacaatacatgacaatt
                     a"
                     /listShort="yhfT, yhfS, phoE"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-10    complement(1036735..1036754)
                     /Source="Nicolas_upshift_promotors"
                     /id="U836"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.977022977022977"
                     /psig="0.999000999001"
                     /xcortree=2919
                     /SigmaFactorBS="ttgcgttcattatgtaaacttaaattaaaaatcAGTTGACAt
                     aataattacctgcATTTATTGTATAACCATATTtgattactttttggaggatttcaca
                     t"
                     /listShort="bioY, yhfT, yhfS, phoE"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(1036749)
                     /Source="Nicolas_upshifts"
                     /id="U836"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.977022977022977"
                     /psig="0.999000999001"
                     /xcortree=2919
                     /SigmaFactorBS="ttgcgttcattatgtaaacttaaattaaaaatcAGTTGACAt
                     aataattacctgcATTTATTGTATAACCATATTtgattactttttggaggatttcaca
                     t"
                     /listShort="bioY, yhfT, yhfS, phoE"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(1036769..1036776)
                     /Source="Nicolas_upshift_promotors"
                     /id="U836"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.977022977022977"
                     /psig="0.999000999001"
                     /xcortree=2919
                     /SigmaFactorBS="ttgcgttcattatgtaaacttaaattaaaaatcAGTTGACAt
                     aataattacctgcATTTATTGTATAACCATATTtgattactttttggaggatttcaca
                     t"
                     /listShort="bioY, yhfT, yhfS, phoE"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             complement(1036845..1038143)
                     /gene="hemAT"
                     /locus_tag="BSU_10380"
                     /old_locus_tag="BSU10380"
                     /function="16.12: Sense"
                     /function="16.3: Control"
                     /experiment="publication(s) with functional evidences,
                     PMID:11481493, 12657801, 12962628, 15033535, 16819829,
                     17003124, 22528495, 22564695"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 11481493, 12657801,
                     12962628, 15033535, 16819829, 17003124, 22528495,
                     22564695; Product type rc: receptor"
                     /codon_start=1
                     /transl_table=11
                     /product="heme-based dioxygen sensor"
                     /protein_id="NP_388919.1"
                     /db_xref="EnsemblGenomes-Gn:BSU10380"
                     /db_xref="EnsemblGenomes-Tr:CAB12878"
                     /db_xref="GOA:O07621"
                     /db_xref="InterPro:IPR004089"
                     /db_xref="InterPro:IPR009050"
                     /db_xref="PDB:1OR4"
                     /db_xref="PDB:1OR6"
                     /db_xref="SubtiList:BG13066"
                     /db_xref="UniProtKB/Swiss-Prot:O07621"
                     /translation="MLFKKDRKQETAYFSDSNGQQKNRIQLTNKHADVKKQLKMVRLG
                     DAELYVLEQLQPLIQENIVNIVDAFYKNLDHESSLMDIINDHSSVDRLKQTLKRHIQE
                     MFAGVIDDEFIEKRNRIASIHLRIGLLPKWYMGAFQELLLSMIDIYEASITNQQELLK
                     AIKATTKILNLEQQLVLEAFQSEYNQTRDEQEEKKNLLHQKIQETSGSIANLFSETSR
                     SVQELVDKSEGISQASKAGTVTSSTVEEKSIGGKKELEVQQKQMNKIDTSLVQIEKEM
                     VKLDEIAQQIEKIFGIVTGIAEQTNLLSLNASIESARAGEHGKGFAVVANEVRKLSED
                     TKKTVSTVSELVNNTNTQINIVSKHIKDVNELVSESKEKMTQINRLFDEIVHSMKISK
                     EQSGKIDVDLQAFLGGLQEVSRAVSHVAASVDSLVILTEE*"
                     /label="hemAT CDS"
     gene            complement(1036845..1038143)
                     /gene="hemAT"
                     /locus_tag="BSU_10380"
                     /old_locus_tag="BSU10380"
                     /label="hemAT gene"
     downshifts      complement(1036856)
                     /Source="Nicolas_upshifts"
                     /id="D565"
                     /incds=0
                     /nref=209
                     /ntot=243
                     /MaxReadThrough="2.70691"
                     /MaxDrop="6.97357"
                     /score="5.86442746"
                     /energy="-6.9"
                     /TU="NA"
                     /idTUdmin="U837"
                     /TUdmin=0
                     /isTUend="TRUE"
                     /label="downshifts"
     promotor_-10    complement(1038197..1038215)
                     /Source="Nicolas_upshift_promotors"
                     /id="U837"
                     /multdbtbs="SigD"
                     /comp="M10"
                     /sig="SigD"
                     /pcomp=1
                     /psig=1
                     /xcortree=2810
                     /SigmaFactorBS="tttttcaaatatttttcatctgcagCTTCATTcatgtttccc
                     ttgGCCGATAAAAAAGAAAAAGgcttaaaaagccaaaaagtaaaaattatatttttcc
                     c"
                     /listShort="hemAT"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(1038200)
                     /Source="Nicolas_upshifts"
                     /id="U837"
                     /multdbtbs="SigD"
                     /comp="M10"
                     /sig="SigD"
                     /pcomp=1
                     /psig=1
                     /xcortree=2810
                     /SigmaFactorBS="tttttcaaatatttttcatctgcagCTTCATTcatgtttccc
                     ttgGCCGATAAAAAAGAAAAAGgcttaaaaagccaaaaagtaaaaattatatttttcc
                     c"
                     /listShort="hemAT"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(1038229..1038235)
                     /Source="Nicolas_upshift_promotors"
                     /id="U837"
                     /multdbtbs="SigD"
                     /comp="M10"
                     /sig="SigD"
                     /pcomp=1
                     /psig=1
                     /xcortree=2810
                     /SigmaFactorBS="tttttcaaatatttttcatctgcagCTTCATTcatgtttccc
                     ttgGCCGATAAAAAAGAAAAAGgcttaaaaagccaaaaagtaaaaattatatttttcc
                     c"
                     /listShort="hemAT"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             complement(1038282..1039811)
                     /gene="yhfW"
                     /locus_tag="BSU_10390"
                     /old_locus_tag="BSU10390"
                     /EC_number="1.-.-.-"
                     /function="16.11: Scavenge (Catabolism)"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative oxidoreductase with Rieske [2Fe-2S]
                     center"
                     /protein_id="NP_388920.1"
                     /db_xref="EnsemblGenomes-Gn:BSU10390"
                     /db_xref="EnsemblGenomes-Tr:CAB12879"
                     /db_xref="GOA:O07622"
                     /db_xref="InterPro:IPR005805"
                     /db_xref="InterPro:IPR006076"
                     /db_xref="InterPro:IPR017941"
                     /db_xref="InterPro:IPR036188"
                     /db_xref="InterPro:IPR036922"
                     /db_xref="SubtiList:BG13067"
                     /db_xref="UniProtKB/Swiss-Prot:O07622"
                     /translation="MANQHFAKEAPETYWKTSTDLPSFPALQEDTECDVTIIGGGITG
                     ITTAYELTKRGFRVVLIEANQVLNGTTAHTTAKVTAQHDMIYDEFIRHFGLNHARLYY
                     EANQNAIDYIKGIVDEHQIDCEWIEQDAYLYTANENAVQKIHTEHEAYTKLGIERDLI
                     KDLPIPLGSKLALVMKNQAQFHPLQYLKALLEQIVQKGGRIYEETVALDIKKGERPEV
                     VTKSRHAIKSRFIICCSHFPFYDGGGLYAARMYSDRSYVLAIKPKIEYPEGMYLSIDQ
                     PSVALRYTVVNGEKLILFSGVSHKTGQGKAMSTHYETLRQLAESTIGIESIPYYWSTQ
                     DLVTIDKIPFIGPMSENEDNILVATGFKKWGMTSSAVAATLLSDLVEKKENPYESIFT
                     PSRFHLNPGLQKVISYNADVAKHLIKGKLEKPDVQFEDISPGEGKAVTINGRRAGAFR
                     DETGCLHLVDTTCTHLGCEVEWNDSEHTWDCPCHGSRFKPSGEVVEGPAIKPLKQIDL
                     D*"
                     /label="yhfW CDS"
     gene            complement(1038282..1039811)
                     /gene="yhfW"
                     /locus_tag="BSU_10390"
                     /old_locus_tag="BSU10390"
                     /label="yhfW gene"
     promotor_-10    complement(1039838..1039856)
                     /Source="Nicolas_upshift_promotors"
                     /id="U838"
                     /multdbtbs="SigF"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.84015984015984"
                     /psig="0.84015984015984"
                     /xcortree=1075
                     /SigmaFactorBS="ttcaaccttattatgttatgaacaatgcctgcTTCCTAtgta
                     tgaaaagataGAATATGGAAAAATTAAGAataaatctgattggaggtataacggcttg
                     g"
                     /listShort="yhfW, hemAT"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(1039848)
                     /Source="Nicolas_upshifts"
                     /id="U838"
                     /multdbtbs="SigF"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.84015984015984"
                     /psig="0.84015984015984"
                     /xcortree=1075
                     /SigmaFactorBS="ttcaaccttattatgttatgaacaatgcctgcTTCCTAtgta
                     tgaaaagataGAATATGGAAAAATTAAGAataaatctgattggaggtataacggcttg
                     g"
                     /listShort="yhfW, hemAT"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    1039867..1039872
                     /Source="Nicolas_upshift_promotors"
                     /id="U839"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.99100899100899"
                     /psig="0.99100899100899"
                     /xcortree=1100
                     /SigmaFactorBS="ccaatcagatttattcttaatttttccatattctatcttttc
                     aTACATAggaagcaggcattgtTCATAACATAATAAGGTTGaaaaggagtgatttcat
                     t"
                     /listShort="yhxC"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-35    complement(1039871..1039876)
                     /Source="Nicolas_upshift_promotors"
                     /id="U838"
                     /multdbtbs="SigF"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.84015984015984"
                     /psig="0.84015984015984"
                     /xcortree=1075
                     /SigmaFactorBS="ttcaaccttattatgttatgaacaatgcctgcTTCCTAtgta
                     tgaaaagataGAATATGGAAAAATTAAGAataaatctgattggaggtataacggcttg
                     g"
                     /listShort="yhfW, hemAT"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     upshifts        1039884
                     /Source="Nicolas_upshifts"
                     /id="U839"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.99100899100899"
                     /psig="0.99100899100899"
                     /xcortree=1100
                     /SigmaFactorBS="ccaatcagatttattcttaatttttccatattctatcttttc
                     aTACATAggaagcaggcattgtTCATAACATAATAAGGTTGaaaaggagtgatttcat
                     t"
                     /listShort="yhxC"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-10    1039888..1039906
                     /Source="Nicolas_upshift_promotors"
                     /id="U839"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.99100899100899"
                     /psig="0.99100899100899"
                     /xcortree=1100
                     /SigmaFactorBS="ccaatcagatttattcttaatttttccatattctatcttttc
                     aTACATAggaagcaggcattgtTCATAACATAATAAGGTTGaaaaggagtgatttcat
                     t"
                     /listShort="yhxC"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     CDS             1039923..1040780
                     /gene="yhxC"
                     /locus_tag="BSU_10400"
                     /old_locus_tag="BSU10400"
                     /EC_number="1.-.-.-"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 18643936, 25720121;
                     Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative oxidoreductase"
                     /protein_id="NP_388921.1"
                     /db_xref="EnsemblGenomes-Gn:BSU10400"
                     /db_xref="EnsemblGenomes-Tr:CAB12880"
                     /db_xref="GOA:P40397"
                     /db_xref="InterPro:IPR002347"
                     /db_xref="InterPro:IPR020904"
                     /db_xref="InterPro:IPR036291"
                     /db_xref="SubtiList:BG11058"
                     /db_xref="UniProtKB/Swiss-Prot:P40397"
                     /translation="MANQKKKTLPPQHQNQQPGFEYLMDPRPVFDKPKKAKKLEGKTA
                     IITGGDSGIGRAVSVLFAKEGANVVIVYLNEHQDAEETKQYVEKEGVKCLLIAGDVGD
                     EAFCNDVVGQASQVFPSIDILVNNAAEQHVQPSIEKITSHQLIRTFQTNIFSMFYLTK
                     AVLPHLKKGSSIINTASITAYKGNKTLIDYSATKGAIVTFTRSLSQSLVQQGIRVNAV
                     APGPIWTPLIPASFAAKDVEVFGSDVPMERPGQPVEVAPSYLYLASDDSTYVTGQTIH
                     VNGGTIVNG*"
                     /label="yhxC CDS"
     gene            1039923..1040780
                     /gene="yhxC"
                     /locus_tag="BSU_10400"
                     /old_locus_tag="BSU10400"
                     /label="yhxC gene"
     downshifts      1040762
                     /Source="Nicolas_upshifts"
                     /id="D566"
                     /incds=0
                     /nref=10
                     /ntot=36
                     /MaxReadThrough="2.65833"
                     /MaxDrop="4.80135"
                     /score="-8.69335909"
                     /energy="-4.5"
                     /TU="NA"
                     /idTUdmin="U839"
                     /TUdmin=0
                     /isTUend="TRUE"
                     /label="downshifts"
     CDS             complement(1040808..1041041)
                     /gene="yhzC"
                     /locus_tag="BSU_10410"
                     /old_locus_tag="BSU10410"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved protein of unknown function"
                     /protein_id="NP_388922.1"
                     /db_xref="EnsemblGenomes-Gn:BSU10410"
                     /db_xref="EnsemblGenomes-Tr:CAB12881"
                     /db_xref="InterPro:IPR014957"
                     /db_xref="SubtiList:BG13087"
                     /db_xref="UniProtKB/Swiss-Prot:O31594"
                     /translation="MKEKKSYTELMKSRNTQKTKEFDVTMTDIYIQMVLDESLYNRRL
                     AMLTDQINKALDEKDKDAFLTLSKEYAALKQSE*"
                     /label="yhzC CDS"
     gene            complement(1040808..1041041)
                     /gene="yhzC"
                     /locus_tag="BSU_10410"
                     /old_locus_tag="BSU10410"
                     /label="yhzC gene"
     downshifts      complement(1040841)
                     /Source="Nicolas_upshifts"
                     /id="D567"
                     /incds=0
                     /nref=191
                     /ntot=247
                     /MaxReadThrough="3.34616"
                     /MaxDrop="7.00218"
                     /score="21.4902337"
                     /energy="-12.3"
                     /TU="U841"
                     /idTUdmin="U844"
                     /TUdmin="-3"
                     /isTUend="TRUE"
                     /label="downshifts"
     promotor_-10    complement(1041058..1041077)
                     /Source="Nicolas_upshift_promotors"
                     /id="U841"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.914085914085914"
                     /psig="0.999000999001"
                     /xcortree=2872
                     /SigmaFactorBS="atagattgccaagtattagttgtctaaaaattataaaaattT
                     ATTGATTttttcgaccgttatCCATATACTATAAAAAAGGCattggggggattcttta
                     t"
                     /listShort="yhzC"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     promotor_-35    1041061..1041062
                     /Source="Nicolas_upshift_promotors"
                     /id="U840"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="Sig-"
                     /pcomp="0.422577422577423"
                     /psig="0.422577422577423"
                     /xcortree=1052
                     /SigmaFactorBS="cgggacttcatgagctcagtgtacgattttttctctttcata
                     aagaatccccccaatgccTTttTTATAGTATATGGATAacggtcgaaaaaatcaataa
                     a"
                     /listShort="comK"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     upshifts        1041061
                     /Source="Nicolas_upshifts"
                     /id="U840"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="Sig-"
                     /pcomp="0.422577422577423"
                     /psig="0.422577422577423"
                     /xcortree=1052
                     /SigmaFactorBS="cgggacttcatgagctcagtgtacgattttttctctttcata
                     aagaatccccccaatgccTTttTTATAGTATATGGATAacggtcgaaaaaatcaataa
                     a"
                     /listShort="comK"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-10    1041065..1041080
                     /Source="Nicolas_upshift_promotors"
                     /id="U840"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="Sig-"
                     /pcomp="0.422577422577423"
                     /psig="0.422577422577423"
                     /xcortree=1052
                     /SigmaFactorBS="cgggacttcatgagctcagtgtacgattttttctctttcata
                     aagaatccccccaatgccTTttTTATAGTATATGGATAacggtcgaaaaaatcaataa
                     a"
                     /listShort="comK"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(1041080)
                     /Source="Nicolas_upshifts"
                     /id="U841"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.914085914085914"
                     /psig="0.999000999001"
                     /xcortree=2872
                     /SigmaFactorBS="atagattgccaagtattagttgtctaaaaattataaaaattT
                     ATTGATTttttcgaccgttatCCATATACTATAAAAAAGGCattggggggattcttta
                     t"
                     /listShort="yhzC"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     S_feature       complement(1041082..1041937)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1116857_1117712_c"
                     /HighExp="Salt, Etha, C30, Heat, S8, LPhT, Gly, C90, S7,
                     UNK1"
                     /AntisenseName="comK"
                     /AntisenseCor="-5.68778941053006E-2"
                     /AntisenseRegPval="-0.5"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigB"
                     /TUshortPSig=1
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S365"
     promotor_-35    complement(1041092..1041099)
                     /Source="Nicolas_upshift_promotors"
                     /id="U841"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.914085914085914"
                     /psig="0.999000999001"
                     /xcortree=2872
                     /SigmaFactorBS="atagattgccaagtattagttgtctaaaaattataaaaattT
                     ATTGATTttttcgaccgttatCCATATACTATAAAAAAGGCattggggggattcttta
                     t"
                     /listShort="yhzC"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-35    1041264..1041271
                     /Source="Nicolas_upshift_promotors"
                     /id="U842"
                     /multdbtbs="SigA"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.747252747252747"
                     /psig="0.997002997002997"
                     /xcortree=2958
                     /SigmaFactorBS="ttaaaagatgattttatcttaaatgttaaaaaaacCTGTCGT
                     TttacaaaaacaGATGATAGATTATTAGTATAaattttgcagaaaaaggatggaggcc
                     a"
                     /listShort="comK, S366, S367"
                     /listLong="yhjA"
                     /label="promotor_-35"
     promotor_-10    1041283..1041302
                     /Source="Nicolas_upshift_promotors"
                     /id="U842"
                     /multdbtbs="SigA"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.747252747252747"
                     /psig="0.997002997002997"
                     /xcortree=2958
                     /SigmaFactorBS="ttaaaagatgattttatcttaaatgttaaaaaaacCTGTCGT
                     TttacaaaaacaGATGATAGATTATTAGTATAaattttgcagaaaaaggatggaggcc
                     a"
                     /listShort="comK, S366, S367"
                     /listLong="yhjA"
                     /label="promotor_-10"
     upshifts        1041289
                     /Source="Nicolas_upshifts"
                     /id="U842"
                     /multdbtbs="SigA"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.747252747252747"
                     /psig="0.997002997002997"
                     /xcortree=2958
                     /SigmaFactorBS="ttaaaagatgattttatcttaaatgttaaaaaaacCTGTCGT
                     TttacaaaaacaGATGATAGATTATTAGTATAaattttgcagaaaaaggatggaggcc
                     a"
                     /listShort="comK, S366, S367"
                     /listLong="yhjA"
                     /label="upshifts"
     CDS             1041334..1041912
                     /gene="comK"
                     /locus_tag="BSU_10420"
                     /old_locus_tag="BSU10420"
                     /function="16.3: Control"
                     /experiment="publication(s) with functional evidences,
                     PMID:15743949, 15819619, 16554821, 16907804, 17468244,
                     26091431, 27501195, 27920766"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 15743949, 15819619,
                     16554821, 16907804, 17468244, 26091431, 27501195,
                     27920766; Product type r: regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="competence transcription factor (CTF)"
                     /protein_id="NP_388923.1"
                     /db_xref="EnsemblGenomes-Gn:BSU10420"
                     /db_xref="EnsemblGenomes-Tr:CAB12882"
                     /db_xref="GOA:P40396"
                     /db_xref="InterPro:IPR010461"
                     /db_xref="SubtiList:BG11059"
                     /db_xref="UniProtKB/Swiss-Prot:P40396"
                     /translation="MSQKTDAPLESYEVNGATIAVLPEEIDGKICSKIIEKDCVFYVN
                     MKPLQIVDRSCRFFGSSYAGRKAGTYEVTKISHKPPIMVDPSNQIFLFPTLSSTRPQC
                     GWISHVHVKEFKATEFDDTEVTFSNGKTMELPISYNSFENQVYRTAWLRTKFQDRIDH
                     RVPKRQEFMLYPKEERTKMIYDFILRELGERY*"
                     /label="comK CDS"
     gene            1041334..1041912
                     /gene="comK"
                     /locus_tag="BSU_10420"
                     /old_locus_tag="BSU10420"
                     /label="comK gene"
     S_feature       1041913..1042058
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1117688_1117833"
                     /HighExp="GM 150, C30, T-4.40H, T-3.40H, GM 120, M9-tran,
                     T-2.40H, C90, G/S, T-1.10H"
                     /AntisenseName="yhxD"
                     /AntisenseCor="-0.229484184862048"
                     /AntisenseRegPval="-3.8"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.997"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S366"
     CDS             complement(1041959..1042858)
                     /gene="yhxD"
                     /locus_tag="BSU_10430"
                     /old_locus_tag="BSU10430"
                     /EC_number="1.-.-.-"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative oxidoreductase"
                     /protein_id="NP_388924.1"
                     /db_xref="EnsemblGenomes-Gn:BSU10430"
                     /db_xref="EnsemblGenomes-Tr:CAB12883"
                     /db_xref="GOA:P40398"
                     /db_xref="InterPro:IPR002347"
                     /db_xref="InterPro:IPR020904"
                     /db_xref="InterPro:IPR036291"
                     /db_xref="SubtiList:BG11060"
                     /db_xref="UniProtKB/Swiss-Prot:P40398"
                     /translation="MSDSNLTNPIKAFFHDEFPEQYQEPPGLQKNMKPVPDCGEKSYK
                     GSGKLTGRKALVTGGDSGIGRAAAIAYAREGADVAINYLPEEQPDAEEVKELIEAEGR
                     KAVLIPGDLSDESFCQDLVKQSHHELGGLDVLALVAGKQQAVENIEDLPTEQIYKTFE
                     VNVFSLYWVVKAALPYLPEGASIITTTSVEGYNPSPMLLDYAATKNAIIGFTVGLGKQ
                     LASKGIRVNSVAPGPIWTPLQISGGQPTENIPKFGQGTPPAPLNRAGQPVELADVYVF
                     LASENSSYVTSQVYGITGGIPTA*"
                     /label="yhxD CDS"
     gene            complement(1041959..1042858)
                     /gene="yhxD"
                     /locus_tag="BSU_10430"
                     /old_locus_tag="BSU10430"
                     /label="yhxD gene"
     downshifts      complement(1041982)
                     /Source="Nicolas_upshifts"
                     /id="D568"
                     /incds=0
                     /nref=7
                     /ntot=53
                     /MaxReadThrough="4.95535"
                     /MaxDrop="4.1467"
                     /score="-2.68458203"
                     /energy="-14.6"
                     /TU="U844"
                     /idTUdmin="U844"
                     /TUdmin="-1144"
                     /isTUend="FALSE"
                     /label="downshifts"
     promotor_-35    1042045..1042048
                     /Source="Nicolas_upshift_promotors"
                     /id="U843"
                     /multdbtbs="-"
                     /comp="M13"
                     /sig="Sig-"
                     /pcomp="0.95104895104895"
                     /psig="0.010989010989011"
                     /xcortree=17
                     /SigmaFactorBS="atgtcacatagcttgaattctctgaagctagaaatacataaa
                     catCGGCcaattccactggctgccCAGCGcgatttaatggagctggcggcgtgccttg
                     t"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     upshifts        1042060
                     /Source="Nicolas_upshifts"
                     /id="U843"
                     /multdbtbs="-"
                     /comp="M13"
                     /sig="Sig-"
                     /pcomp="0.95104895104895"
                     /psig="0.010989010989011"
                     /xcortree=17
                     /SigmaFactorBS="atgtcacatagcttgaattctctgaagctagaaatacataaa
                     catCGGCcaattccactggctgccCAGCGcgatttaatggagctggcggcgtgccttg
                     t"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-10    1042066..1042070
                     /Source="Nicolas_upshift_promotors"
                     /id="U843"
                     /multdbtbs="-"
                     /comp="M13"
                     /sig="Sig-"
                     /pcomp="0.95104895104895"
                     /psig="0.010989010989011"
                     /xcortree=17
                     /SigmaFactorBS="atgtcacatagcttgaattctctgaagctagaaatacataaa
                     catCGGCcaattccactggctgccCAGCGcgatttaatggagctggcggcgtgccttg
                     t"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     downshifts      1042104
                     /Source="Nicolas_upshifts"
                     /id="D569"
                     /incds=1
                     /nref=1
                     /ntot=5
                     /MaxReadThrough="5.45904"
                     /MaxDrop="5.6543"
                     /score="-8.69335909"
                     /energy="-4.5"
                     /TU="U842"
                     /idTUdmin="U843"
                     /TUdmin=0
                     /isTUend="TRUE"
                     /label="downshifts"
     S_feature       1042149..1043015
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1117924_1118790"
                     /HighExp="GM 150, C30, T-4.40H, C90, T-3.40H, T-2.40H,
                     G/S, T-5.40H, M9-tran, nit"
                     /AntisenseName="yhxD"
                     /AntisenseCor="-0.32746434250834699"
                     /AntisenseRegPval="-7.4"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.997"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S367"
     promotor_-10    complement(1042885..1042903)
                     /Source="Nicolas_upshift_promotors"
                     /id="U844"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp=1
                     /psig=1
                     /xcortree=190
                     /SigmaFactorBS="tgttttctttttccttcactattcaaactgccaaaacaTGTT
                     TTTctgcttatgctcagGGGTACACATACGAATGTAcaccaaacagaaaaggagcgtt
                     g"
                     /listShort="yhxD, S365, yhzC"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(1042902)
                     /Source="Nicolas_upshifts"
                     /id="U844"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp=1
                     /psig=1
                     /xcortree=190
                     /SigmaFactorBS="tgttttctttttccttcactattcaaactgccaaaacaTGTT
                     TTTctgcttatgctcagGGGTACACATACGAATGTAcaccaaacagaaaaggagcgtt
                     g"
                     /listShort="yhxD, S365, yhzC"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(1042918..1042924)
                     /Source="Nicolas_upshift_promotors"
                     /id="U844"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp=1
                     /psig=1
                     /xcortree=190
                     /SigmaFactorBS="tgttttctttttccttcactattcaaactgccaaaacaTGTT
                     TTTctgcttatgctcagGGGTACACATACGAATGTAcaccaaacagaaaaggagcgtt
                     g"
                     /listShort="yhxD, S365, yhzC"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-35    1042992..1042999
                     /Source="Nicolas_upshift_promotors"
                     /id="U845"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.866133866133866"
                     /psig=1
                     /xcortree=2715
                     /SigmaFactorBS="aaaacaagaaaaaacaaagccttcttccatatttaTCTTGTC
                     AaataagactatatgAATTATGATAAATTCGAGCTataaatcaactaaatattgggtg
                     t"
                     /listShort="yhjA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    1043014..1043033
                     /Source="Nicolas_upshift_promotors"
                     /id="U845"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.866133866133866"
                     /psig=1
                     /xcortree=2715
                     /SigmaFactorBS="aaaacaagaaaaaacaaagccttcttccatatttaTCTTGTC
                     AaataagactatatgAATTATGATAAATTCGAGCTataaatcaactaaatattgggtg
                     t"
                     /listShort="yhjA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        1043017
                     /Source="Nicolas_upshifts"
                     /id="U845"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.866133866133866"
                     /psig=1
                     /xcortree=2715
                     /SigmaFactorBS="aaaacaagaaaaaacaaagccttcttccatatttaTCTTGTC
                     AaataagactatatgAATTATGATAAATTCGAGCTataaatcaactaaatattgggtg
                     t"
                     /listShort="yhjA"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             1043075..1043344
                     /gene="yhjA"
                     /locus_tag="BSU_10440"
                     /old_locus_tag="BSU10440"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved hypothetical protein"
                     /protein_id="NP_388925.1"
                     /db_xref="EnsemblGenomes-Gn:BSU10440"
                     /db_xref="EnsemblGenomes-Tr:CAB12884"
                     /db_xref="InterPro:IPR008613"
                     /db_xref="SubtiList:BG13068"
                     /db_xref="UniProtKB/Swiss-Prot:O07555"
                     /translation="MKKAAAVLLSLGLVFGFSYGAGHVAEAKTKVKVYKNCKELNKVY
                     KGGVARTSKVKNKGGKTKYKPYVSKALYDANKNKDRDKDLIACER*"
                     /label="yhjA CDS"
     gene            1043075..1043344
                     /gene="yhjA"
                     /locus_tag="BSU_10440"
                     /old_locus_tag="BSU10440"
                     /label="yhjA gene"
     downshifts      1043336
                     /Source="Nicolas_upshifts"
                     /id="D570"
                     /incds=0
                     /nref=230
                     /ntot=267
                     /MaxReadThrough="2.67325"
                     /MaxDrop="7.59695"
                     /score="27.4895724"
                     /energy="-11.2"
                     /TU="NA"
                     /idTUdmin="U845"
                     /TUdmin=0
                     /isTUend="TRUE"
                     /label="downshifts"
     downshifts      complement(1043384)
                     /Source="Nicolas_upshifts"
                     /id="D571"
                     /incds=0
                     /nref=11
                     /ntot=113
                     /MaxReadThrough="2.40747"
                     /MaxDrop="4.60953"
                     /score="20.2036192"
                     /energy="-11.2"
                     /TU="NA"
                     /idTUdmin="U846"
                     /TUdmin=6
                     /isTUend="TRUE"
                     /label="downshifts"
     CDS             complement(1043387..1044856)
                     /gene="yhjB"
                     /locus_tag="BSU_10450"
                     /old_locus_tag="BSU10450"
                     /function="16.1: Circulate"
                     /function="16.6: Maintain"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 15849754, 16267290,
                     16850406; Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="putative Na+/metabolite cotransporter"
                     /protein_id="NP_388926.1"
                     /db_xref="EnsemblGenomes-Gn:BSU10450"
                     /db_xref="EnsemblGenomes-Tr:CAB12885"
                     /db_xref="GOA:O07556"
                     /db_xref="InterPro:IPR001734"
                     /db_xref="SubtiList:BG13069"
                     /db_xref="UniProtKB/Swiss-Prot:O07556"
                     /translation="MNAALIIIFGVLLLSIFLGIRAQKGKDMNLEQWTVGGRGFGTVF
                     VFLLMAGEIYTTFTFLGGSGWAYGKGGPAFYIIAYGCLAYILSYWLLPAVWTYAKQHK
                     LMSQSDFFTKKYNSPLLGILVSLVGIAALIPYLVLQLKGLGLIVSETSYGKITPTAAI
                     WIGAVSITVYVMVSGIHGSAWISVVKDIMILVVVLFLGVYLPIHYYGGFQDMFQQIET
                     AKPGFLTLPESGQSVAWFSSTVLLTALGFYMWPHTFSASYSAENPKVFRKNAIIMPLY
                     QLVLLFVLFVGFAAILQVPDLNGADGDLSLLRLSLQAFDPWFVGIIGAAGLLTALVPG
                     SMILMSASTLFAKNVYKVIAPRTTEQQVSALAKFLVPVIALISVYFTFKGGNTIVTLL
                     LMGYSLVTQLFPALLFSLLKHNMVTKQGAFAGIIAGVGAVTYITMTETTIGTLFPALP
                     QAAKDLNVGIVALLLNITVMMAVSLMTRKAKSAAADQAA*"
                     /label="yhjB CDS"
     gene            complement(1043387..1044856)
                     /gene="yhjB"
                     /locus_tag="BSU_10450"
                     /old_locus_tag="BSU10450"
                     /label="yhjB gene"
     CDS             complement(1044853..1045053)
                     /gene="yhjC"
                     /locus_tag="BSU_10460"
                     /old_locus_tag="BSU10460"
                     /function="16.1: Circulate"
                     /function="16.6: Maintain"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 16267290; Product type
                     f: factor"
                     /codon_start=1
                     /transl_table=11
                     /product="putative exported protein"
                     /protein_id="NP_388927.1"
                     /db_xref="EnsemblGenomes-Gn:BSU10460"
                     /db_xref="EnsemblGenomes-Tr:CAB12886"
                     /db_xref="GOA:O07557"
                     /db_xref="InterPro:IPR021741"
                     /db_xref="SubtiList:BG13070"
                     /db_xref="UniProtKB/Swiss-Prot:O07557"
                     /translation="MKLIHVLAALPFIGILLGIPFANKVTPYVFGMPFILAYIVMWAL
                     LTSALMAIVYVLDKENKKEEAE*"
                     /label="yhjC CDS"
     gene            complement(1044853..1045053)
                     /gene="yhjC"
                     /locus_tag="BSU_10460"
                     /old_locus_tag="BSU10460"
                     /label="yhjC gene"
     S_feature       complement(1045054..1045172)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1120829_1120947_c"
                     /HighExp="S1, Etha, HiOs, MG 120, LoTm, T-5.40H, S2,
                     GM-0.1, GM-0.2, T0.0H"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA, SigA"
                     /TUshortPSig="1, 0.999"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S368"
     promotor_-10    complement(1045155..1045174)
                     /Source="Nicolas_upshift_promotors"
                     /id="U846"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.574425574425574"
                     /psig=1
                     /xcortree=2904
                     /SigmaFactorBS="cttcgggcgattcagagcattaatttcagacaattcacACTA
                     TACAaacaaaataaatTTATTTATAATTCGAACCACagcctttcactccaaaaaatga
                     c"
                     /listShort="S368, yhjC, yhjB"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(1045172)
                     /Source="Nicolas_upshifts"
                     /id="U846"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.574425574425574"
                     /psig=1
                     /xcortree=2904
                     /SigmaFactorBS="cttcgggcgattcagagcattaatttcagacaattcacACTA
                     TACAaacaaaataaatTTATTTATAATTCGAACCACagcctttcactccaaaaaatga
                     c"
                     /listShort="S368, yhjC, yhjB"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(1045187..1045194)
                     /Source="Nicolas_upshift_promotors"
                     /id="U846"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.574425574425574"
                     /psig=1
                     /xcortree=2904
                     /SigmaFactorBS="cttcgggcgattcagagcattaatttcagacaattcacACTA
                     TACAaacaaaataaatTTATTTATAATTCGAACCACagcctttcactccaaaaaatga
                     c"
                     /listShort="S368, yhjC, yhjB"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     downshifts      complement(1045260)
                     /Source="Nicolas_upshifts"
                     /id="D572"
                     /incds=0
                     /nref=1
                     /ntot=8
                     /MaxReadThrough="3.99656"
                     /MaxDrop="2.67326"
                     /score="20.2036192"
                     /energy="-11.2"
                     /TU="U848"
                     /idTUdmin="U848"
                     /TUdmin="-374"
                     /isTUend="FALSE"
                     /label="downshifts"
     CDS             complement(1045261..1045623)
                     /gene="yhjD"
                     /locus_tag="BSU_10470"
                     /old_locus_tag="BSU10470"
                     /function="16.6: Maintain"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms; PubMedId: 16267290"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved hypothetical protein"
                     /protein_id="NP_388928.1"
                     /db_xref="EnsemblGenomes-Gn:BSU10470"
                     /db_xref="EnsemblGenomes-Tr:CAB12887"
                     /db_xref="GOA:O07558"
                     /db_xref="SubtiList:BG13071"
                     /db_xref="UniProtKB/Swiss-Prot:O07558"
                     /translation="MPNLQEEIYDLIERALFLPMAITIFNRDLAGIEESTLKLKHPYK
                     QLISESLKIAQKDLMEVRKELRKRKIAIRETERDEAFTLYTFVIDGYEENHRYFNPRI
                     REQVSELLTYYLFAPDRL*"
                     /label="yhjD CDS"
     gene            complement(1045261..1045623)
                     /gene="yhjD"
                     /locus_tag="BSU_10470"
                     /old_locus_tag="BSU10470"
                     /label="yhjD gene"
     promotor_-35    1045461..1045466
                     /Source="Nicolas_upshift_promotors"
                     /id="U847"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.963036963036963"
                     /psig="0.963036963036963"
                     /xcortree=1144
                     /SigmaFactorBS="tttcctcagttcttttctgacctccatcaaatccttttGTGC
                     TAtttttaatgattcgcTGATAAGCTGTTTATAAGGatgcttcaattttaatgtgctt
                     t"
                     /listShort="S369, yhjE, sipV"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    1045482..1045500
                     /Source="Nicolas_upshift_promotors"
                     /id="U847"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.963036963036963"
                     /psig="0.963036963036963"
                     /xcortree=1144
                     /SigmaFactorBS="tttcctcagttcttttctgacctccatcaaatccttttGTGC
                     TAtttttaatgattcgcTGATAAGCTGTTTATAAGGatgcttcaattttaatgtgctt
                     t"
                     /listShort="S369, yhjE, sipV"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        1045483
                     /Source="Nicolas_upshifts"
                     /id="U847"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.963036963036963"
                     /psig="0.963036963036963"
                     /xcortree=1144
                     /SigmaFactorBS="tttcctcagttcttttctgacctccatcaaatccttttGTGC
                     TAtttttaatgattcgcTGATAAGCTGTTTATAAGGatgcttcaattttaatgtgctt
                     t"
                     /listShort="S369, yhjE, sipV"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     S_feature       1045492..1045731
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1121267_1121506"
                     /HighExp="S6, S4, S8, S5, LoTm, B36, S3, S7, BT, B60"
                     /AntisenseName="yhjD"
                     /AntisenseCor="0.24202608585419999"
                     /AntisenseRegPval="-4.2"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigEF"
                     /TUshortPSig="0.963"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S369"
     promotor_-10    complement(1045653..1045672)
                     /Source="Nicolas_upshift_promotors"
                     /id="U848"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.975024975024975"
                     /psig="0.999000999001"
                     /xcortree=1502
                     /SigmaFactorBS="tcagcagaaaactaaaaagttttggtgattttttctgTCTTG
                     AAAcatttcaccagccgATATAGAATACAAATAGAACaaacgttcccttagaaagaag
                     g"
                     /listShort="yhjD, S368, yhjC"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(1045671)
                     /Source="Nicolas_upshifts"
                     /id="U848"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.975024975024975"
                     /psig="0.999000999001"
                     /xcortree=1502
                     /SigmaFactorBS="tcagcagaaaactaaaaagttttggtgattttttctgTCTTG
                     AAAcatttcaccagccgATATAGAATACAAATAGAACaaacgttcccttagaaagaag
                     g"
                     /listShort="yhjD, S368, yhjC"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(1045687..1045694)
                     /Source="Nicolas_upshift_promotors"
                     /id="U848"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.975024975024975"
                     /psig="0.999000999001"
                     /xcortree=1502
                     /SigmaFactorBS="tcagcagaaaactaaaaagttttggtgattttttctgTCTTG
                     AAAcatttcaccagccgATATAGAATACAAATAGAACaaacgttcccttagaaagaag
                     g"
                     /listShort="yhjD, S368, yhjC"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-35    1045713..1045720
                     /Source="Nicolas_upshift_promotors"
                     /id="U849"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.711288711288711"
                     /psig="0.998001998001998"
                     /xcortree=619
                     /SigmaFactorBS="cggctggtgaaatgtttcaagacagaaaaaatcaccaaaaCT
                     TTTTAGttttctgctgataATGTGTAGAATAAGGATAGAcaaacccggtaaggagtat
                     a"
                     /listShort="yhjE, sipV"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     upshifts        1045733
                     /Source="Nicolas_upshifts"
                     /id="U849"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.711288711288711"
                     /psig="0.998001998001998"
                     /xcortree=619
                     /SigmaFactorBS="cggctggtgaaatgtttcaagacagaaaaaatcaccaaaaCT
                     TTTTAGttttctgctgataATGTGTAGAATAAGGATAGAcaaacccggtaaggagtat
                     a"
                     /listShort="yhjE, sipV"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-10    1045734..1045753
                     /Source="Nicolas_upshift_promotors"
                     /id="U849"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.711288711288711"
                     /psig="0.998001998001998"
                     /xcortree=619
                     /SigmaFactorBS="cggctggtgaaatgtttcaagacagaaaaaatcaccaaaaCT
                     TTTTAGttttctgctgataATGTGTAGAATAAGGATAGAcaaacccggtaaggagtat
                     a"
                     /listShort="yhjE, sipV"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     CDS             1045775..1046398
                     /gene="yhjE"
                     /locus_tag="BSU_10480"
                     /old_locus_tag="BSU10480"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 15849754, 16850406;
                     Product type m: membrane component"
                     /codon_start=1
                     /transl_table=11
                     /product="putative integral membrane protein"
                     /protein_id="NP_388929.1"
                     /db_xref="EnsemblGenomes-Gn:BSU10480"
                     /db_xref="EnsemblGenomes-Tr:CAB12888"
                     /db_xref="GOA:O07559"
                     /db_xref="InterPro:IPR015414"
                     /db_xref="InterPro:IPR032816"
                     /db_xref="SubtiList:BG13072"
                     /db_xref="UniProtKB/Swiss-Prot:O07559"
                     /translation="MLEHFLSYLTQEHLTELFQSYRAFGPLIAVLLPLIEAFLPFLPL
                     IVFVVANTNSFGLWEGFILSWAGSTAGSILVFLIVRQYGQRKLLGFIRSHPSVRKLML
                     WVERHGFGPMFLLLCFPFTPSAAVNVVAGLSRIGTRPFILAAASGKLVMIFMISFIGY
                     DLHALITQPIRTVIAVLVITVLWYVGKKVERYLHVRASQREHDGGRQ*"
                     /label="yhjE CDS"
     gene            1045775..1046398
                     /gene="yhjE"
                     /locus_tag="BSU_10480"
                     /old_locus_tag="BSU10480"
                     /label="yhjE gene"
     CDS             1046400..1046906
                     /gene="sipV"
                     /locus_tag="BSU_10490"
                     /old_locus_tag="BSU10490"
                     /EC_number="3.4.21.89"
                     /function="16.13: Shape"
                     /function="16.2: Construct biomass (Anabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:9325333, 9694797, 11309398, 12897006, 14568161,
                     27159567"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 9325333, 9694797,
                     11309398, 12897006, 14568161, 27159567; Product type e :
                     enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="type I signal peptidase"
                     /protein_id="NP_388930.1"
                     /db_xref="EnsemblGenomes-Gn:BSU10490"
                     /db_xref="EnsemblGenomes-Tr:CAB12889"
                     /db_xref="GOA:O07560"
                     /db_xref="InterPro:IPR000223"
                     /db_xref="InterPro:IPR015927"
                     /db_xref="InterPro:IPR019756"
                     /db_xref="InterPro:IPR019757"
                     /db_xref="InterPro:IPR019758"
                     /db_xref="InterPro:IPR036286"
                     /db_xref="SubtiList:BG12674"
                     /db_xref="UniProtKB/Swiss-Prot:O07560"
                     /translation="MKKRFWFLAGVVSVVLAIQVKNAVFIDYKVEGVSMNPTFQEGNE
                     LLVNKFSHRFKTIHRFDIVLFKGPDHKVLIKRVIGLPGETIKYKDDQLYVNGKQVAEP
                     FLKHLKSVSAGSHVTGDFSLKDVTGTSKVPKGKYFVVGDNRIYSFDSRHFGPIREKNI
                     VGVISDAE*"
                     /label="sipV CDS"
     gene            1046400..1046906
                     /gene="sipV"
                     /locus_tag="BSU_10490"
                     /old_locus_tag="BSU10490"
                     /label="sipV gene"
     downshifts      1046899
                     /Source="Nicolas_upshifts"
                     /id="D573"
                     /incds=0
                     /nref=131
                     /ntot=250
                     /MaxReadThrough="0.63331"
                     /MaxDrop="4.58282"
                     /score="-7.37718733"
                     /energy="-7.1"
                     /TU="NA"
                     /idTUdmin="U847"
                     /TUdmin=0
                     /isTUend="TRUE"
                     /label="downshifts"
     promotor_-35    1046957..1046964
                     /Source="Nicolas_upshift_promotors"
                     /id="U850"
                     /multdbtbs="-"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp="0.662337662337662"
                     /psig=1
                     /xcortree=2713
                     /SigmaFactorBS="cgtctttttgtatgccgtttggaaaaatgtGTTGAAGAaaaa
                     tttgtaaggAGCTATAATCAAAATTGTTAcctgtgtaacaaaatttatatattttttt
                     g"
                     /listShort="S370, yhjG, yhjH"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    1046978..1046997
                     /Source="Nicolas_upshift_promotors"
                     /id="U850"
                     /multdbtbs="-"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp="0.662337662337662"
                     /psig=1
                     /xcortree=2713
                     /SigmaFactorBS="cgtctttttgtatgccgtttggaaaaatgtGTTGAAGAaaaa
                     tttgtaaggAGCTATAATCAAAATTGTTAcctgtgtaacaaaatttatatattttttt
                     g"
                     /listShort="S370, yhjG, yhjH"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     S_feature       1046987..1047086
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1122762_1122861"
                     /HighExp="LBGstat, LBGexp, Lbtran, C90, dia0, Lbexp, HPh,
                     dia5, aero, LBGtran"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig=1
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S370"
     upshifts        1046987
                     /Source="Nicolas_upshifts"
                     /id="U850"
                     /multdbtbs="-"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp="0.662337662337662"
                     /psig=1
                     /xcortree=2713
                     /SigmaFactorBS="cgtctttttgtatgccgtttggaaaaatgtGTTGAAGAaaaa
                     tttgtaaggAGCTATAATCAAAATTGTTAcctgtgtaacaaaatttatatattttttt
                     g"
                     /listShort="S370, yhjG, yhjH"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             1047087..1048586
                     /gene="yhjG"
                     /locus_tag="BSU_10500"
                     /old_locus_tag="BSU10500"
                     /EC_number="1.14.13.-"
                     /function="16.11: Scavenge (Catabolism)"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 7678243, 15121720;
                     Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative aromatic compound
                     monooxygenase/hydroxylase"
                     /protein_id="NP_388931.1"
                     /db_xref="EnsemblGenomes-Gn:BSU10500"
                     /db_xref="EnsemblGenomes-Tr:CAB12890"
                     /db_xref="GOA:O07561"
                     /db_xref="InterPro:IPR002938"
                     /db_xref="InterPro:IPR036188"
                     /db_xref="SubtiList:BG13073"
                     /db_xref="UniProtKB/Swiss-Prot:O07561"
                     /translation="MMMKYEAVIIGGGPVGFMLASELAIAGVGTCVIERLEKPVPHSK
                     ALTLHPRTLELLEMRGILERFVSKGSKIPTGHFSMLDTRLDFSGLDTSCPYTLLLPQS
                     KTEKLLEDHARSLGTEVFRGAEALAVTQNGEAVQTIFKDRDGSVRTITSKFAVGADGA
                     GSTVRKQAKIEFPGTDSTVTAALGDVVLLSPPPSGVLSLCTKEGGVMIVPLSPDRYRV
                     VVISPYRTQTPKDVPVTEEELKADLLRICGTDFGLTDPSWMSRFGNAARQAKRYRDGR
                     IFLAGDAAHIHFPAGGQGLNVGLQDAMNLGWKLAAAIKGSAPSWLLDSYHDERHPAAE
                     GLLRNTEAQTKLIDFTQAGLHLRSMMSELLAFPDVNRYVAGQISALDVRYEADRTMPP
                     NRLNGARLPDMKLILSDGNSERLYSFLQNGTFVLLSLRQEADDHIEVKGLRTVTASLA
                     EPNEKLRNVHTILIRPDGHVAWAVDASAPDCSEVIQKGISRWFSVTSRV*"
                     /label="yhjG CDS"
     gene            1047087..1048586
                     /gene="yhjG"
                     /locus_tag="BSU_10500"
                     /old_locus_tag="BSU10500"
                     /label="yhjG gene"
     promotor_-35    1048594..1048601
                     /Source="Nicolas_upshift_promotors"
                     /id="U851"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.515484515484515"
                     /psig=1
                     /xcortree=1955
                     /SigmaFactorBS="cagccgctggttttccgtcaccagccgagtataattcaattC
                     GATTGTTtcatctgtaacaaAACGGTATGATAGAAGAAACaatcgaatgaaaaaggat
                     g"
                     /listShort="yhjH"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     upshifts        1048613
                     /Source="Nicolas_upshifts"
                     /id="U851"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.515484515484515"
                     /psig=1
                     /xcortree=1955
                     /SigmaFactorBS="cagccgctggttttccgtcaccagccgagtataattcaattC
                     GATTGTTtcatctgtaacaaAACGGTATGATAGAAGAAACaatcgaatgaaaaaggat
                     g"
                     /listShort="yhjH"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-10    1048615..1048634
                     /Source="Nicolas_upshift_promotors"
                     /id="U851"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.515484515484515"
                     /psig=1
                     /xcortree=1955
                     /SigmaFactorBS="cagccgctggttttccgtcaccagccgagtataattcaattC
                     GATTGTTtcatctgtaacaaAACGGTATGATAGAAGAAACaatcgaatgaaaaaggat
                     g"
                     /listShort="yhjH"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     CDS             1048663..1049190
                     /gene="yhjH"
                     /locus_tag="BSU_10510"
                     /old_locus_tag="BSU10510"
                     /function="16.3: Control"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; Product type r: regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="putative transcriptional regulator"
                     /protein_id="NP_388932.1"
                     /db_xref="EnsemblGenomes-Gn:BSU10510"
                     /db_xref="EnsemblGenomes-Tr:CAB12891"
                     /db_xref="GOA:Q796S4"
                     /db_xref="InterPro:IPR000835"
                     /db_xref="InterPro:IPR023187"
                     /db_xref="InterPro:IPR036388"
                     /db_xref="InterPro:IPR036390"
                     /db_xref="SubtiList:BG13074"
                     /db_xref="UniProtKB/Swiss-Prot:Q796S4"
                     /translation="MNTDHTKRNLFELYAELIHQQEKWEGLIKAFLSDELRKLDVEHG
                     SKSQLTMTEIHVLSCVGDNEPINVTSIAEKMNTTKATVSRISTKLLGAGFLHRTQLSD
                     NKKEVYFRLTPAGKKLHSLHKYYHQKAEQRFLSFFDRYTEEEILFAERLFRDLVTKWY
                     PSSEEIEGGLPSIFK*"
                     /label="yhjH CDS"
     gene            1048663..1049190
                     /gene="yhjH"
                     /locus_tag="BSU_10510"
                     /old_locus_tag="BSU10510"
                     /label="yhjH gene"
     downshifts      1049152
                     /Source="Nicolas_upshifts"
                     /id="D574"
                     /incds=0
                     /nref=8
                     /ntot=128
                     /MaxReadThrough="1.1509"
                     /MaxDrop="3.41655"
                     /score="11.3050978"
                     /energy="-9.9"
                     /TU="NA"
                     /idTUdmin="U851"
                     /TUdmin=8
                     /isTUend="TRUE"
                     /label="downshifts"
     S_feature       complement(1049204..1049347)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1124979_1125122_c"
                     /HighExp="B36, B60, T0.30H, LBGstat, T1.30H, T1.0H, LPhT,
                     LBGtran, Diami, T-0.40H"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.979"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S371"
     downshifts      complement(1049242)
                     /Source="Nicolas_upshifts"
                     /id="D575"
                     /incds=0
                     /nref=4
                     /ntot=72
                     /MaxReadThrough="1.20458"
                     /MaxDrop="5.06167"
                     /score="27.254423"
                     /energy="-9.9"
                     /TU="NA"
                     /idTUdmin="U855"
                     /TUdmin=0
                     /isTUend="TRUE"
                     /label="downshifts"
     CDS             complement(1049348..1050553)
                     /gene="glcP"
                     /locus_tag="BSU_10520"
                     /old_locus_tag="BSU10520"
                     /function="16.1: Circulate"
                     /experiment="publication(s) with functional evidences,
                     PMID:9457850, 15849754, 16850406, 17056753, 19087206"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 9457850, 15849754,
                     16850406, 17056753, 19087206; Product type t :
                     transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="glucose/mannose:H+ symporter (recent HGT
                     island)"
                     /protein_id="NP_388933.1"
                     /db_xref="EnsemblGenomes-Gn:BSU10520"
                     /db_xref="EnsemblGenomes-Tr:CAB12892"
                     /db_xref="GOA:O07563"
                     /db_xref="InterPro:IPR011701"
                     /db_xref="InterPro:IPR020846"
                     /db_xref="InterPro:IPR036259"
                     /db_xref="SubtiList:BG13075"
                     /db_xref="UniProtKB/Swiss-Prot:O07563"
                     /translation="MLRGTYLFGYAFFFTVGIIHISTGSLTPFLLEAFNKTTDDISVI
                     IFFQFTGFLSGVLIAPLMIKKYSHFRTLTLALTIMLVALSIFFLTKDWYYIIVMAFLL
                     GYGAGTLETTVGSFVIANFESNAEKMSKLEVLFGLGALSFPLLINSFIDINNWFLPYY
                     CIFTFLFVLFVGWLIFLSKNREYAKNANQQVTFPDGGAFQYFIGDRKKSKQLGFFVFF
                     AFLYAGIETNFANFLPSIMINQDNEQISLISVSFFWVGIIIGRILIGFVSRRLDFSKY
                     LLFSCSCLIVLLIAFSYISNPILQLSGTFLIGLSIAGIFPIALTLASIIIQKYVDEVT
                     SLFIASASFGGAIISFLIGWSLNQDTILLTMGIFTTMAVILVGISVKIRRTKTEDPIS
                     LENKASKTQ*"
                     /label="glcP CDS"
     gene            complement(1049348..1050553)
                     /gene="glcP"
                     /locus_tag="BSU_10520"
                     /old_locus_tag="BSU10520"
                     /label="glcP gene"
     promotor_-35    1050043..1050048
                     /Source="Nicolas_upshift_promotors"
                     /id="U852"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.995004995004995"
                     /psig="0.995004995004995"
                     /xcortree=1194
                     /SigmaFactorBS="tctcggttcttagacaagaaaattaaccaccctaCGAATAgg
                     acgaataaaaaggtGAATATACAGTAATATGGTaaaaaccagttattgatatctatga
                     a"
                     /listShort="S372"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    1050065..1050083
                     /Source="Nicolas_upshift_promotors"
                     /id="U852"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.995004995004995"
                     /psig="0.995004995004995"
                     /xcortree=1194
                     /SigmaFactorBS="tctcggttcttagacaagaaaattaaccaccctaCGAATAgg
                     acgaataaaaaggtGAATATACAGTAATATGGTaaaaaccagttattgatatctatga
                     a"
                     /listShort="S372"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     S_feature       1050068..1050594
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1125843_1126369"
                     /HighExp="S4, S5, S6, S8, S7, S3, T5.0H, M9-stat, LBGstat,
                     T4.0H"
                     /AntisenseName="glcP"
                     /AntisenseCor="-0.155079396671681"
                     /AntisenseRegPval="-2"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigEF"
                     /TUshortPSig="0.995"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S372"
     upshifts        1050069
                     /Source="Nicolas_upshifts"
                     /id="U852"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.995004995004995"
                     /psig="0.995004995004995"
                     /xcortree=1194
                     /SigmaFactorBS="tctcggttcttagacaagaaaattaaccaccctaCGAATAgg
                     acgaataaaaaggtGAATATACAGTAATATGGTaaaaaccagttattgatatctatga
                     a"
                     /listShort="S372"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     downshifts      1050552
                     /Source="Nicolas_upshifts"
                     /id="D576"
                     /incds=0
                     /nref=6
                     /ntot=59
                     /MaxReadThrough="2.40974"
                     /MaxDrop="3.26024"
                     /score="9.68585629"
                     /energy="-9.4"
                     /TU="NA"
                     /idTUdmin="U852"
                     /TUdmin=0
                     /isTUend="TRUE"
                     /label="downshifts"
     CDS             complement(1050625..1051677)
                     /gene="ntdC"
                     /locus_tag="BSU_10530"
                     /old_locus_tag="BSU10530"
                     /EC_number="1.1.1.-"
                     /function="16.8: Protect"
                     /function="16.5: Explore"
                     /function="16.3: Control"
                     /experiment="publication(s) with functional evidences,
                     PMID:14612444, 17056753, 23586652, 28353336"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 14612444, 17056753,
                     23586652, 28353336; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="biosynthesis of neotrehalosadiamine
                     (3,3'-diamino-3,3'-dideoxy-alpha,beta-trehalose),
                     glucose-6-P 3-dehydrogenase; kanosamine biosynthesis
                     (recent HGT island)"
                     /protein_id="NP_388934.2"
                     /db_xref="EnsemblGenomes-Gn:BSU10530"
                     /db_xref="EnsemblGenomes-Tr:CAB12893"
                     /db_xref="GOA:O07564"
                     /db_xref="InterPro:IPR000683"
                     /db_xref="InterPro:IPR004104"
                     /db_xref="InterPro:IPR036291"
                     /db_xref="SubtiList:BG13076"
                     /db_xref="UniProtKB/Swiss-Prot:O07564"
                     /translation="MKKIGIIGAGGIARAHATALSTIKNAELVGVYDINQQNAESFVK
                     TFGGKSFENVDELIDASEGLIVASPNFCHKEHALQALGKHKHVLCEKPMAISLEEASI
                     MKDTAERLSVRASMGFNYRYLSYVNILKSLIINNELGNILSIKVHFKKNSALRRKKFT
                     WRDDANSKKTSGSLGDLGIHLIDMVWYLFESDFITESVRAKMNTNVKTKEDKQVLVDD
                     YAEIYGQLKNKVFVNIITSKCSVPEDCGFSIEVVGHKKEFKYHTGNPHVYKLIDGLNV
                     VDCPVPQSLLNDPPNEFYGWADSFRSELINWIASTQNDWVEIPSFSDGFRSQEVLEMF
                     FEKDSNSQPMSVSAVN*"
                     /label="ntdC CDS"
     gene            complement(1050625..1051677)
                     /gene="ntdC"
                     /locus_tag="BSU_10530"
                     /old_locus_tag="BSU10530"
                     /label="ntdC gene"
     CDS             complement(1051691..1052539)
                     /gene="ntdB"
                     /locus_tag="BSU_10540"
                     /old_locus_tag="BSU10540"
                     /EC_number="3.-.-.-"
                     /function="16.8: Protect"
                     /function="16.3: Control"
                     /experiment="publication(s) with functional evidences,
                     PMID:14612444, 17056753, 23586652"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 14612444, 17056753,
                     23586652; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="biosynthesis of neotrehalosadiamine
                     (3,3'-diamino-3,3'-dideoxy-alpha,
                     beta-trehalose);kanosamine-6-phosphate phosphatase (recent
                     HGT island)"
                     /protein_id="NP_388935.2"
                     /db_xref="EnsemblGenomes-Gn:BSU10540"
                     /db_xref="EnsemblGenomes-Tr:CAB12894"
                     /db_xref="GOA:O07565"
                     /db_xref="InterPro:IPR006379"
                     /db_xref="InterPro:IPR006380"
                     /db_xref="InterPro:IPR036412"
                     /db_xref="PDB:3GYG"
                     /db_xref="SubtiList:BG13077"
                     /db_xref="UniProtKB/Swiss-Prot:O07565"
                     /translation="MLLSKKSEYKTLSTVEHPQYIVFCDFDETYFPHTIDEQKQQDIY
                     ELEDYLEQKSKDGELIIGWVTGSSIESILDKMGRGKFRYFPHFIASDLGTEITYFSEH
                     NFGQQDNKWNSRINEGFSKEKVEKLVKQLHENHNILLNPQTQLGKSRYKHNFYYQEQD
                     EINDKKNLLAIEKICEEYGVSVNINRCNPLAGDPEDSYDVDFIPIGTGKNEIVTFMLE
                     KYNLNTERAIAFGDSGNDVRMLQTVGNGYLLKNATQEAKNLHNLITDSEYSKGITNTL
                     KKLIGS*"
                     /label="ntdB CDS"
     gene            complement(1051691..1052539)
                     /gene="ntdB"
                     /locus_tag="BSU_10540"
                     /old_locus_tag="BSU10540"
                     /label="ntdB gene"
     CDS             complement(1052511..1053836)
                     /gene="ntdA"
                     /locus_tag="BSU_10550"
                     /old_locus_tag="BSU10550"
                     /EC_number="2.6.1.-"
                     /function="16.5: Explore"
                     /function="16.3: Control"
                     /function="16.8: Protect"
                     /experiment="publication(s) with functional evidences,
                     PMID:14612444, 17056753, 19087206, 23586652, 24097983,
                     24509311, 28353336"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 14612444, 17056753,
                     19087206, 23586652, 24097983, 24509311, 28353336; Product
                     type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="biosynthesis of neotrehalosadiamine
                     (3,3'-diamino-3,3'-dideoxy-alpha,
                     beta-trehalose);3-oxo-glucose-6-phosphate:glutamate
                     aminotransferase; kanosamine aminotransferase (recent HGT
                     island)"
                     /protein_id="NP_388936.1"
                     /db_xref="EnsemblGenomes-Gn:BSU10550"
                     /db_xref="EnsemblGenomes-Tr:CAB12895"
                     /db_xref="GOA:O07566"
                     /db_xref="InterPro:IPR000653"
                     /db_xref="InterPro:IPR015421"
                     /db_xref="InterPro:IPR015422"
                     /db_xref="InterPro:IPR015424"
                     /db_xref="PDB:4K2B"
                     /db_xref="PDB:4K2I"
                     /db_xref="PDB:4K2M"
                     /db_xref="SubtiList:BG13078"
                     /db_xref="UniProtKB/Swiss-Prot:O07566"
                     /translation="MQKQVKISGKSKENMSLLKHLKGDVQGKELVIEDSIVNERWKQV
                     LKEKIDIEHDLFNYQKNREISKVPFLPVDRLITNDEVEDILNTLTEVLPTGKFTSGPY
                     LEQFEKVLSTYLHKRYVIATSSGTDAIMIGLLALGLNPGDEVIMPANSFSATENAVLA
                     SGGVPIYVDINPQTFCIDPDKIEEAITPYTKFILPVHLYGKHSDMQHIRQIANRYKLK
                     VIEDACQGIGLTDLGKYADITTLSFNPYKNFGVCGKAGAIATDNEELAKKCIQFSYHG
                     FEVNVKNKKVINFGFNSKMDNLQAAIGLERMKYLSLNNFKRLFLADRYITQLAELQNK
                     GYIELPELSEDHVWHLFPIKVRTEDRADIMTKLNEDFGVQTDVYYPILSHMQKTPLVQ
                     DKYAGLQLVHTEKAHSQVLHLPLYPSFTLEEQDRVMEGLFHVIKQEIGV*"
                     /label="ntdA CDS"
     gene            complement(1052511..1053836)
                     /gene="ntdA"
                     /locus_tag="BSU_10550"
                     /old_locus_tag="BSU10550"
                     /label="ntdA gene"
     promotor_-35    1052680..1052685
                     /Source="Nicolas_upshift_promotors"
                     /id="U853"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.997002997002997"
                     /psig="0.997002997002997"
                     /xcortree=1031
                     /SigmaFactorBS="cctgcatacttgtcctgtactaaaggagtttttTGCATAtga
                     gaaagtattggaTAATATACATCTGTTTGAAcaccaaaatcttcatttaatttagtca
                     t"
                     /listShort="S373, S374, yhjM"
                     /listLong="S375"
                     /label="promotor_-35"
     promotor_-10    1052701..1052719
                     /Source="Nicolas_upshift_promotors"
                     /id="U853"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.997002997002997"
                     /psig="0.997002997002997"
                     /xcortree=1031
                     /SigmaFactorBS="cctgcatacttgtcctgtactaaaggagtttttTGCATAtga
                     gaaagtattggaTAATATACATCTGTTTGAAcaccaaaatcttcatttaatttagtca
                     t"
                     /listShort="S373, S374, yhjM"
                     /listLong="S375"
                     /label="promotor_-10"
     S_feature       1052707..1053495
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1128482_1129270"
                     /HighExp="S4, S3, S5, S6, S7, T5.0H, M9-stat, S8, Pyr,
                     G/S"
                     /AntisenseName="ntdA"
                     /AntisenseCor="-0.29559566742128002"
                     /AntisenseRegPval="-6.1"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigEF"
                     /TUshortPSig="0.997"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S373"
     upshifts        1052707
                     /Source="Nicolas_upshifts"
                     /id="U853"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.997002997002997"
                     /psig="0.997002997002997"
                     /xcortree=1031
                     /SigmaFactorBS="cctgcatacttgtcctgtactaaaggagtttttTGCATAtga
                     gaaagtattggaTAATATACATCTGTTTGAAcaccaaaatcttcatttaatttagtca
                     t"
                     /listShort="S373, S374, yhjM"
                     /listLong="S375"
                     /label="upshifts"
     promotor_-35    1053471..1053478
                     /Source="Nicolas_upshift_promotors"
                     /id="U854"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.776223776223776"
                     /psig="0.998001998001998"
                     /xcortree=2928
                     /SigmaFactorBS="ataaacctatcataatagcatcggttccactgctGGTTGCAA
                     ttacataccttttaTGTAAATATGTAGATAAAACtttttcgaattgctctaaataggg
                     a"
                     /listShort="S374, yhjM, S375"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    1053493..1053512
                     /Source="Nicolas_upshift_promotors"
                     /id="U854"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.776223776223776"
                     /psig="0.998001998001998"
                     /xcortree=2928
                     /SigmaFactorBS="ataaacctatcataatagcatcggttccactgctGGTTGCAA
                     ttacataccttttaTGTAAATATGTAGATAAAACtttttcgaattgctctaaataggg
                     a"
                     /listShort="S374, yhjM, S375"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     S_feature       1053497..1053939
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1129272_1129714"
                     /HighExp="T4.0H, T3.0H, T2.30H, HiOs, T3.30H, T2.0H,
                     T5.0H, T1.30H, LoTm, T-1.10H"
                     /AntisenseName="ntdA"
                     /AntisenseCor="-0.101471720232752"
                     /AntisenseRegPval="-1"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA, SigEF"
                     /TUshortPSig="0.998, 0.997"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S374"
     upshifts        1053497
                     /Source="Nicolas_upshifts"
                     /id="U854"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.776223776223776"
                     /psig="0.998001998001998"
                     /xcortree=2928
                     /SigmaFactorBS="ataaacctatcataatagcatcggttccactgctGGTTGCAA
                     ttacataccttttaTGTAAATATGTAGATAAAACtttttcgaattgctctaaataggg
                     a"
                     /listShort="S374, yhjM, S375"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-10    complement(1053871..1053890)
                     /Source="Nicolas_upshift_promotors"
                     /id="U855"
                     /multdbtbs="SigA"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.849150849150849"
                     /psig="0.97902097902098"
                     /xcortree=1578
                     /SigmaFactorBS="gcatattttcccttccttaaaaaagttgttgaCATGTTACcg
                     atttcagaaacTAGGATAAATTTGTAATAAAtttttagattataaaatcattggaggt
                     a"
                     /listShort="ntdA, ntdB, ntdC, glcP, S371"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(1053883)
                     /Source="Nicolas_upshifts"
                     /id="U855"
                     /multdbtbs="SigA"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.849150849150849"
                     /psig="0.97902097902098"
                     /xcortree=1578
                     /SigmaFactorBS="gcatattttcccttccttaaaaaagttgttgaCATGTTACcg
                     atttcagaaacTAGGATAAATTTGTAATAAAtttttagattataaaatcattggaggt
                     a"
                     /listShort="ntdA, ntdB, ntdC, glcP, S371"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(1053904..1053911)
                     /Source="Nicolas_upshift_promotors"
                     /id="U855"
                     /multdbtbs="SigA"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.849150849150849"
                     /psig="0.97902097902098"
                     /xcortree=1578
                     /SigmaFactorBS="gcatattttcccttccttaaaaaagttgttgaCATGTTACcg
                     atttcagaaacTAGGATAAATTTGTAATAAAtttttagattataaaatcattggaggt
                     a"
                     /listShort="ntdA, ntdB, ntdC, glcP, S371"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             1053940..1054929
                     /gene="ntdR"
                     /locus_tag="BSU_10560"
                     /old_locus_tag="BSU10560"
                     /experiment="publication(s) with functional evidences,
                     PMID:14612444, 17056753"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 14612444, 17056753;
                     Product type r: regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator of the ntd operon
                     (NtdR-NTD) (recent HGT island)"
                     /protein_id="NP_388937.1"
                     /db_xref="EnsemblGenomes-Gn:BSU10560"
                     /db_xref="EnsemblGenomes-Tr:CAB12896"
                     /db_xref="GOA:O07567"
                     /db_xref="InterPro:IPR000843"
                     /db_xref="InterPro:IPR010982"
                     /db_xref="InterPro:IPR028082"
                     /db_xref="InterPro:IPR036388"
                     /db_xref="SubtiList:BG13079"
                     /db_xref="UniProtKB/Swiss-Prot:O07567"
                     /translation="MPTIDEIAKLCNVSKTTVSRVLNNHPYVSKEKRDMILKAINELD
                     YTPNYLARNFRRNKTQTIALSVPSIDHPFFAQLIKGVSHEVLFKNYKVIVFQTFYDKQ
                     TELELLELLKHKEVDGIILGTLENEWDQISPFLKYGPILLCNEYHHSADITIIGYDEF
                     EAAYMGVVHLIERGHKKIGFCFDTPYSEAQCQRKEGYLKALQDYNLHHRSEWIFGEMF
                     NIEDGFRVFHKIKDLKDRPSAIFTGNDQVAAGIIKQAMKNGFKVPEDLAVIGFDNQLI
                     CQVVTPTITTIDIPVIELGQQAVLKIIESISGNASLNRRIIKLPTKLIIREST*"
                     /label="ntdR CDS"
     gene            1053940..1054929
                     /gene="ntdR"
                     /locus_tag="BSU_10560"
                     /old_locus_tag="BSU10560"
                     /label="ntdR gene"
     S_feature       1054930..1055307
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1130705_1131082"
                     /HighExp="T4.0H, T5.0H, T3.30H, T2.0H, HiOs, T2.30H,
                     T3.0H, LoTm, T1.30H, Pyr"
                     /AntisenseName="yhjN"
                     /AntisenseCor="-5.0383887616073E-2"
                     /AntisenseRegPval="-0.4"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.998"
                     /TUlongSig="SigEF"
                     /TUlongPSig="0.997"
                     /label="S375"
     S_feature       complement(1054984..1055142)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1130759_1130917_c"
                     /HighExp="B60, Sw, Cold, B36, BI, GM 15, GM 10, C30, GM
                     25, GM 60"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.99"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S376"
     downshifts      complement(1055027)
                     /Source="Nicolas_upshifts"
                     /id="D577"
                     /incds=0
                     /nref=25
                     /ntot=169
                     /MaxReadThrough="3.07371"
                     /MaxDrop="4.24831"
                     /score="-1.9470655"
                     /energy="-7.1"
                     /TU="U856"
                     /idTUdmin="U856"
                     /TUdmin="-66"
                     /isTUend="FALSE"
                     /label="downshifts"
     CDS             complement(1055143..1056297)
                     /gene="yhjN"
                     /locus_tag="BSU_10570"
                     /old_locus_tag="BSU10570"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 15849754, 16850406,
                     22720735; Product type m: membrane component"
                     /codon_start=1
                     /transl_table=11
                     /product="putative integral inner membrane protein
                     (recentHGT island)"
                     /protein_id="NP_388938.1"
                     /db_xref="EnsemblGenomes-Gn:BSU10570"
                     /db_xref="EnsemblGenomes-Tr:CAB12897"
                     /db_xref="GOA:O07568"
                     /db_xref="InterPro:IPR007820"
                     /db_xref="InterPro:IPR017516"
                     /db_xref="SubtiList:BG13080"
                     /db_xref="UniProtKB/Swiss-Prot:O07568"
                     /translation="MKKDENLLKDLWFIAISAAGGFILSLTGISIGWMIGTLIVACCL
                     AMIRPAWLMMAPDQKGINRRWLALGQMILGIELGQKLNLSVLSVLKDHWFSVGVMLIL
                     SILLAMLSGYVLWRFSKTDMMTSFVGTAPGGLSAMPSIAQEVGANTAIVSLVQMMRVL
                     LVVLSIPFLVILIYTKQDRTASAAAETISSATTDFRLAPVLWTVILILAAWGACKAAK
                     FLKFPAPWLLGSMLGVAIVHVGGAAVTGHDMTAWWLSQANHVSQVFLGATIGSKMYKS
                     MFAGVTRIIIVGFVSSVGLIAAMFLSAVIVSELTGISLITSVLAFAPGGIAEMATTSV
                     TLHADSTFVVAVQVIRVILVIALLPPFYRLLHHLHGEKKDKKSSISGSSA*"
                     /label="yhjN CDS"
     gene            complement(1055143..1056297)
                     /gene="yhjN"
                     /locus_tag="BSU_10570"
                     /old_locus_tag="BSU10570"
                     /label="yhjN gene"
     S_feature       complement(1056298..1056369)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1132073_1132144_c"
                     /HighExp="Cold, GM 15, GM 10, dia15, BC, BI, Salt, B60,
                     Sw, GM 90"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.99"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S377"
     promotor_-10    complement(1056352..1056371)
                     /Source="Nicolas_upshift_promotors"
                     /id="U856"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.414585414585415"
                     /psig="0.99000999000999"
                     /xcortree=2773
                     /SigmaFactorBS="cataagaaaagtgaatcgcttatagaaaataattcataATTT
                     CTttatcaacaaaaaTATACTATAGTAATAAATACattcactacgtgaacaattggag
                     t"
                     /listShort="S377, yhjN, S376"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(1056368)
                     /Source="Nicolas_upshifts"
                     /id="U856"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.414585414585415"
                     /psig="0.99000999000999"
                     /xcortree=2773
                     /SigmaFactorBS="cataagaaaagtgaatcgcttatagaaaataattcataATTT
                     CTttatcaacaaaaaTATACTATAGTAATAAATACattcactacgtgaacaattggag
                     t"
                     /listShort="S377, yhjN, S376"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(1056385..1056390)
                     /Source="Nicolas_upshift_promotors"
                     /id="U856"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.414585414585415"
                     /psig="0.99000999000999"
                     /xcortree=2773
                     /SigmaFactorBS="cataagaaaagtgaatcgcttatagaaaataattcataATTT
                     CTttatcaacaaaaaTATACTATAGTAATAAATACattcactacgtgaacaattggag
                     t"
                     /listShort="S377, yhjN, S376"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             complement(1056404..1057609)
                     /gene="yhjO"
                     /locus_tag="BSU_10580"
                     /old_locus_tag="BSU10580"
                     /function="16.1: Circulate"
                     /function="16.8: Protect"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 15849754, 16850406;
                     Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="putative permease (recent HGT island)"
                     /protein_id="NP_388939.1"
                     /db_xref="EnsemblGenomes-Gn:BSU10580"
                     /db_xref="EnsemblGenomes-Tr:CAB12898"
                     /db_xref="GOA:O07569"
                     /db_xref="InterPro:IPR011701"
                     /db_xref="InterPro:IPR020846"
                     /db_xref="InterPro:IPR036259"
                     /db_xref="SubtiList:BG13081"
                     /db_xref="UniProtKB/Swiss-Prot:O07569"
                     /translation="MLTSFHSIKSRYTAPVRLRFFGELLTSLTGAMMGPFMVLYLHEQ
                     LNGSIMMPMLIISLQPFADIFLTLAAGRVTDRLGRRTAILTALLLQSAAMTGFVFAEH
                     AYVFAILYVMNGIGRSLYIPASRAQIAESTPESRRSEVFAVINAIYSTGLTAGPLVGM
                     LLYNHNPVWIFALDAAALFIYFLIAALKLPETKPLHPAVTPKMSASFTIYRPVLLLLL
                     LSLPISMLYAQTETTYRLFSKNMFSDYLSMLTIYSAAKALFSCVLQVPLVKGTEKLSM
                     KTILFITYICYSLAAAGFACSTSLTMLLVTAAVMTVGESIGLTHIQTFISKLAPPHLL
                     GRFYAVYGLHWDISRSIGPLAGGLILTSFGGEVIFYALAVCLLTAGLSLTYTIEKLEH
                     KVIRKVNRL*"
                     /label="yhjO CDS"
     gene            complement(1056404..1057609)
                     /gene="yhjO"
                     /locus_tag="BSU_10580"
                     /old_locus_tag="BSU10580"
                     /label="yhjO gene"
     misc_feature    1057630..1057649
                     /Source="Nicolas_upshift_promotors"
                     /id="U857"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.699300699300699"
                     /psig="0.999000999001"
                     /xcortree=2118
                     /SigmaFactorBS="tatctcgattttatagagtgaaaactggtcaacatgtgatcg
                     ccgcctttcgctgTTTGATATAGTAGTAGTGTAtagaaggggcggcggcccaaaaagt
                     g"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_single_box"
                     /note="Geneious type: promotor_single_box"
     upshifts        1057635
                     /Source="Nicolas_upshifts"
                     /id="U857"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.699300699300699"
                     /psig="0.999000999001"
                     /xcortree=2118
                     /SigmaFactorBS="tatctcgattttatagagtgaaaactggtcaacatgtgatcg
                     ccgcctttcgctgTTTGATATAGTAGTAGTGTAtagaaggggcggcggcccaaaaagt
                     g"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             1057723..1059450
                     /gene="yhjP"
                     /locus_tag="BSU_10590"
                     /old_locus_tag="BSU10590"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; Product type r: regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="putative transcription factor"
                     /protein_id="NP_388940.1"
                     /db_xref="EnsemblGenomes-Gn:BSU10590"
                     /db_xref="EnsemblGenomes-Tr:CAB12899"
                     /db_xref="GOA:O07570"
                     /db_xref="InterPro:IPR000914"
                     /db_xref="InterPro:IPR025370"
                     /db_xref="InterPro:IPR030678"
                     /db_xref="InterPro:IPR036388"
                     /db_xref="SubtiList:BG13082"
                     /db_xref="UniProtKB/Swiss-Prot:O07570"
                     /translation="MKLIEHYVALVKTGCAEYGQMNEMTLTEIADCLFCTERNAKLIL
                     HKLENSNWIIRESGAGRGRKSKIAFLRRPEELLLQTAKEYTMSGKLKKAKELLQQYQS
                     AFPGLQNEYNMWLSEVFGFVTETGENGAKDVLRLFITPESVSSLDPCQIFLRSEGHFV
                     KQIFDTLFTFDSDMQEPKPHLVHGWEEVGKKQWRFFLRKGVLFHNGQPLTSRDVAFTF
                     QRFLELADNPYKWLLHGVKQVLEKGPYCVELILDKPNALLPYALCDERLSILPAEQGG
                     GKNGTGPFQMNQQHSGMLVLEANERYFKGRPYLDRVEFVFSEQAGEMNGFTIQEKQTC
                     PEQQTVFDERHVQYLSLNLKKKGPLQHRSFRKALRLLISSERLVREAGGHRRIPVTSF
                     LHPSPFEWEGVSPSELLKKSGYEGETIVLYTFSETDHREDAEWIQNICAQHGIRLTLQ
                     FCDAADLRRPEIVQMADIIHDSATFYQDSEFGFLHLLLSENSFLYQHLSEKLTQICSG
                     MTERMFSMPDRCSRINILRDIDRQMIQELNAIPLYQNVLQVTSSKNVKGLVLDEEGWI
                     DLYSVWLSK*"
                     /label="yhjP CDS"
     gene            1057723..1059450
                     /gene="yhjP"
                     /locus_tag="BSU_10590"
                     /old_locus_tag="BSU10590"
                     /label="yhjP gene"
     promotor_-35    1059036..1059043
                     /Source="Nicolas_upshift_promotors"
                     /id="U858"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.531468531468531"
                     /psig="0.802197802197802"
                     /xcortree=1827
                     /SigmaFactorBS="atcatcgtgaggacgccgaatggattcaaaaTATTTGCGccc
                     agcacggtatcAGGCTTACACTTCAATTCTGtgatgctgctgatctgcgacggccgga
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    1059058..1059077
                     /Source="Nicolas_upshift_promotors"
                     /id="U858"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.531468531468531"
                     /psig="0.802197802197802"
                     /xcortree=1827
                     /SigmaFactorBS="atcatcgtgaggacgccgaatggattcaaaaTATTTGCGccc
                     agcacggtatcAGGCTTACACTTCAATTCTGtgatgctgctgatctgcgacggccgga
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        1059065
                     /Source="Nicolas_upshifts"
                     /id="U858"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.531468531468531"
                     /psig="0.802197802197802"
                     /xcortree=1827
                     /SigmaFactorBS="atcatcgtgaggacgccgaatggattcaaaaTATTTGCGccc
                     agcacggtatcAGGCTTACACTTCAATTCTGtgatgctgctgatctgcgacggccgga
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             complement(1059480..1059806)
                     /gene="yhjQ"
                     /locus_tag="BSU_10600"
                     /old_locus_tag="BSU10600"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 12625841; Product type
                     c: carrier"
                     /codon_start=1
                     /transl_table=11
                     /product="putative metal-chelating cysteine-rich protein
                     of unknown function"
                     /protein_id="NP_388941.1"
                     /db_xref="EnsemblGenomes-Gn:BSU10600"
                     /db_xref="EnsemblGenomes-Tr:CAB12900"
                     /db_xref="InterPro:IPR005560"
                     /db_xref="PDB:5FIG"
                     /db_xref="SubtiList:BG13083"
                     /db_xref="UniProtKB/Swiss-Prot:O07571"
                     /translation="MEQYSEACIEACIDCMKACNHCFTKCLEESVQHHLSGCIRLDRE
                     CADICALAVKAMQTDSPFMKEICALCADICEACGTECGKHDHDHCQACAKACFTCAEQ
                     CRSMAA*"
                     /label="yhjQ CDS"
     gene            complement(1059480..1059806)
                     /gene="yhjQ"
                     /locus_tag="BSU_10600"
                     /old_locus_tag="BSU10600"
                     /label="yhjQ gene"
     CDS             complement(1059924..1060361)
                     /gene="yhjR"
                     /locus_tag="BSU_10610"
                     /old_locus_tag="BSU10610"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 22078549, 22882546;
                     Product type c: carrier"
                     /codon_start=1
                     /transl_table=11
                     /product="putative electron carrier protein (putative
                     sporulation gene)"
                     /protein_id="NP_388942.1"
                     /db_xref="EnsemblGenomes-Gn:BSU10610"
                     /db_xref="EnsemblGenomes-Tr:CAB12901"
                     /db_xref="GOA:O07572"
                     /db_xref="InterPro:IPR003251"
                     /db_xref="InterPro:IPR009078"
                     /db_xref="InterPro:IPR012347"
                     /db_xref="SubtiList:BG13084"
                     /db_xref="UniProtKB/Swiss-Prot:O07572"
                     /translation="MHYSYYPYPVPYREDPVLIRNLQKAINGEFSAIQCYRKLAELAH
                     SDEVRKQIEEIRRDEIRHLREFSTLYGSITGKHIMPKQTEECPDNFTRGLDAAFKDEQ
                     ETVDFYLRAAEETSNLKAKGVFTRAARDEQNHAVWFLYYLMER*"
                     /label="yhjR CDS"
     gene            complement(1059924..1060361)
                     /gene="yhjR"
                     /locus_tag="BSU_10610"
                     /old_locus_tag="BSU10610"
                     /label="yhjR gene"
     downshifts      complement(1059933)
                     /Source="Nicolas_upshifts"
                     /id="D578"
                     /incds=0
                     /nref=1
                     /ntot=10
                     /MaxReadThrough="3.72767"
                     /MaxDrop="3.86885"
                     /score="16.2430017"
                     /energy="-11.5"
                     /TU="U859"
                     /idTUdmin="U859"
                     /TUdmin="-440"
                     /isTUend="FALSE"
                     /label="downshifts"
     promotor_-10    complement(1060392..1060411)
                     /Source="Nicolas_upshift_promotors"
                     /id="U859"
                     /multdbtbs="SigK"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp=1
                     /psig=1
                     /xcortree=1267
                     /SigmaFactorBS="tggtaaaaacggccttttcacatataaaaagctgattatCTC
                     CGCACATctctccctgcccAACATATACTTTTACAGAAGcccaattcctaagaatgga
                     g"
                     /listShort="yhjR, yhjQ"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(1060412)
                     /Source="Nicolas_upshifts"
                     /id="U859"
                     /multdbtbs="SigK"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp=1
                     /psig=1
                     /xcortree=1267
                     /SigmaFactorBS="tggtaaaaacggccttttcacatataaaaagctgattatCTC
                     CGCACATctctccctgcccAACATATACTTTTACAGAAGcccaattcctaagaatgga
                     g"
                     /listShort="yhjR, yhjQ"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(1060424..1060433)
                     /Source="Nicolas_upshift_promotors"
                     /id="U859"
                     /multdbtbs="SigK"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp=1
                     /psig=1
                     /xcortree=1267
                     /SigmaFactorBS="tggtaaaaacggccttttcacatataaaaagctgattatCTC
                     CGCACATctctccctgcccAACATATACTTTTACAGAAGcccaattcctaagaatgga
                     g"
                     /listShort="yhjR, yhjQ"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-35    1060481..1060488
                     /Source="Nicolas_upshift_promotors"
                     /id="U860"
                     /multdbtbs="SigA"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.875124875124875"
                     /psig=1
                     /xcortree=1809
                     /SigmaFactorBS="gaaaaggccgtttttaccaatagatcaGATTGGTCattttcg
                     tcaacaTTCGATAAAATATAGAGAGAtaaaaagagaggggtcttctaatttgggagca
                     g"
                     /listShort="addB, addA, S378, sbcD, sbcC, yisB"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    1060502..1060521
                     /Source="Nicolas_upshift_promotors"
                     /id="U860"
                     /multdbtbs="SigA"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.875124875124875"
                     /psig=1
                     /xcortree=1809
                     /SigmaFactorBS="gaaaaggccgtttttaccaatagatcaGATTGGTCattttcg
                     tcaacaTTCGATAAAATATAGAGAGAtaaaaagagaggggtcttctaatttgggagca
                     g"
                     /listShort="addB, addA, S378, sbcD, sbcC, yisB"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        1060514
                     /Source="Nicolas_upshifts"
                     /id="U860"
                     /multdbtbs="SigA"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.875124875124875"
                     /psig=1
                     /xcortree=1809
                     /SigmaFactorBS="gaaaaggccgtttttaccaatagatcaGATTGGTCattttcg
                     tcaacaTTCGATAAAATATAGAGAGAtaaaaagagaggggtcttctaatttgggagca
                     g"
                     /listShort="addB, addA, S378, sbcD, sbcC, yisB"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             1060545..1064045
                     /gene="addB"
                     /locus_tag="BSU_10620"
                     /old_locus_tag="BSU10620"
                     /function="16.6: Maintain"
                     /experiment="publication(s) with functional evidences,
                     PMID:7746142, 8387145, 8510642, 8752323, 11544244,
                     16385024, 16780573, 19542287, 21071401, 22307084,
                     24670664, 26762979"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 7746142, 8387145,
                     8510642, 8752323, 11544244, 16385024, 16780573, 19542287,
                     21071401, 22307084, 24670664, 26762979; Product type e :
                     enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent deoxyribonuclease (subunit B)"
                     /protein_id="NP_388943.2"
                     /db_xref="EnsemblGenomes-Gn:BSU10620"
                     /db_xref="EnsemblGenomes-Tr:CAB12902"
                     /db_xref="GOA:P23477"
                     /db_xref="InterPro:IPR014016"
                     /db_xref="InterPro:IPR014017"
                     /db_xref="InterPro:IPR014140"
                     /db_xref="InterPro:IPR027417"
                     /db_xref="PDB:3U44"
                     /db_xref="PDB:3U4Q"
                     /db_xref="PDB:4CEH"
                     /db_xref="PDB:4CEI"
                     /db_xref="PDB:4CEJ"
                     /db_xref="SubtiList:BG10465"
                     /db_xref="UniProtKB/Swiss-Prot:P23477"
                     /translation="MGAEFLVGRSGSGKTKLIINSIQDELRRAPFGKPIIFLVPDQMT
                     FLMEYELAKTPDMGGMIRAQVFSFSRLAWRVLQHTGGMSRPFLTSTGVQMLLRKLIEE
                     HKQEFKVYQKASDKSGFTAQVERMLTEFKRYCLEPEDIRRMAESGTASEYRGERVLSE
                     KLHDLSILYQQMEKSLADQYLHSEDYLTLLAEHIPLAEDIKGAHIYVDGFYQFTPQEF
                     RVLEQLMVHAEHITFSLTADKPSYEREPHELELFRMTGKTYYRLHQKAKELNLDITYK
                     ELSGTERHTKTPELAHLEAQYEARPAIPYAEKQEALTVMQAANRRAELEGIAREIHAL
                     VREKGYRYKDVAILARQPEDYKDMVKEVFADYEIPYFIDGKASMLNHPLIEFIRSSLD
                     VLKGNWRYEAVFRCVKTELLFPLNEPKAKVREQVDQLENYCIAYGIKGDRWTKGDRFQ
                     YRRFVSLDDDFAQTDQEIEMENMLNDTRDWIVPPLFQLQKRMKKAKTVQEKAEALYRY
                     LEETDVPLKLDQERQRAEDDGRIIEAQQHQQAWDAVIQLLEEFVEMMGDDEISLDLFQ
                     QMIEAGAESLTFSLIPPALDQVFVGNMDLSRMYGTSCTFVLGANDGVLPARPDENGVL
                     SDDDREWLKTIGVELSSGGRERLLDEHFLIYMAFSSPSDRLYVSYPIADAEGKTLLPS
                     MIVKRLEELFPHHKERLLTNEPEQVSDEEQLMYVVNKSVAQSFTASQLRLWTREYDIS
                     DVWWSTYNVLMSEQDRLQSKKLFSSLFFRNEVKQLERSVSRQLYGERIQGSVSRMETF
                     NACPFSHFASHGLHLKERQFFKLEAPDIGQLFHSSLKLISDRLREQKLDWRDLTKEQC
                     ELFSYDAVERLAPKLQKEILLSSNRHYYVKEKLQKIVTRVSGILSEHAKASGFVPIGL
                     ELGFGGKGPLPPLTFQLKNGCTMELVGRIDRVDKAESSKGLLLRIVDYKSSDKGLDLA
                     EVYYGLALQMLTYLDLSITHSADWLGMRATPAGVLYFHIHDPMIQSNLPLGLDEIEQE
                     IFKKFKMKGLLLGDQEVVRLMDTTLQEGRSNIINAGLKKDGSLRSDSAAVGEKEFDLL
                     TKHVRRTFQEAGEQITDGRVSIEPYKMKNKTPCTYCAFKSVCQFDESLEENEYRPLKA
                     EKDKTILEWIKKEADGNEHS*"
                     /label="addB CDS"
     gene            1060545..1064045
                     /gene="addB"
                     /locus_tag="BSU_10620"
                     /old_locus_tag="BSU10620"
                     /label="addB gene"
     CDS             1064032..1067730
                     /gene="addA"
                     /locus_tag="BSU_10630"
                     /old_locus_tag="BSU10630"
                     /function="16.6: Maintain"
                     /experiment="publication(s) with functional evidences,
                     PMID:7746142, 8387145, 8510642, 8752323, 11544244,
                     16385024, 16780573, 19542287, 21071401, 22307084,
                     24670664, 26762979"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 7746142, 8387145,
                     8510642, 8752323, 11544244, 16385024, 16780573, 19542287,
                     21071401, 22307084, 24670664, 26762979; Product type e :
                     enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent deoxyribonuclease (subunit A)"
                     /protein_id="NP_388944.2"
                     /db_xref="EnsemblGenomes-Gn:BSU10630"
                     /db_xref="EnsemblGenomes-Tr:CAB12903"
                     /db_xref="GOA:P23478"
                     /db_xref="InterPro:IPR000212"
                     /db_xref="InterPro:IPR011335"
                     /db_xref="InterPro:IPR011604"
                     /db_xref="InterPro:IPR014016"
                     /db_xref="InterPro:IPR014017"
                     /db_xref="InterPro:IPR014152"
                     /db_xref="InterPro:IPR027417"
                     /db_xref="InterPro:IPR034739"
                     /db_xref="PDB:3U44"
                     /db_xref="PDB:3U4Q"
                     /db_xref="PDB:4CEH"
                     /db_xref="PDB:4CEI"
                     /db_xref="PDB:4CEJ"
                     /db_xref="SubtiList:BG10466"
                     /db_xref="UniProtKB/Swiss-Prot:P23478"
                     /translation="MNIPKPADSTWTDDQWNAIVSTGQDILVAAAAGSGKTAVLVERM
                     IRKITAEENPIDVDRLLVVTFTNASAAEMKHRIAEALEKELVQRPGSLHIRRQLSLLN
                     RASISTLHSFCLQVLKKYYYLIDLDPGFRIADQTEGELIGDEVLDELFEDEYAKGEKA
                     FFELVDRYTTDRHDLDLQFLVKQVYEYSRSHPNPEAWLESFVHLYDVSEKSAIEELPF
                     YQYVKEDIAMVLNGAKEKLLRALELTKAPGGPAPRADNFLDDLAQIDELIQHQDDFSE
                     LYKRVPAVSFKRAKAVKGDEFDPALLDEATDLRNGAKKLLEKLKTDYFTRSPEQHLKS
                     LAEMKPVIETLVQLVISYGKRFEAAKQEKSIIDFSDLEHYCLAILTAENDKGEREPSE
                     AARFYQEQFHEVLVDEYQDTNLVQESILQLVTSGPEETGNLFMVGDVKQSIYRFRLAE
                     PLLFLSKYKRFTESGEGTGRKIDLNKNFRSRADILDSTNFLFKQLMGGKIGEVDYDEQ
                     AELKLGAAYPDNDETETELLLIDNAEDTDASEEAEELETVQFEAKAIAKEIRKLISSP
                     FKVYDGKKKTHRNIQYRDIVILLRSMPWAPQIMEELRAQGIPVYANLTSGYFEAVEVA
                     VALSVLKVIDNPYQDIPLASVLRSPIVGADENELSLIRLENKKAPYYEAMKDYLAAGD
                     RSDELYQKLNTFYGHLQKWRAFSKNHSVSELIWEVYRDTKYMDYVGGMPGGKQRQANL
                     RVLYDRARQYESTAFRGLFRFLRFIERMQERGDDLGTARALSEQEDVVRLMTIHSSKG
                     LEFPVVFVAGLGRNFNMMDLNKSYLLDKELGFGTKYIHPQLRISYPTLPLIAMKKKMR
                     RELLSEELRVLYVALTRAKEKLFLIGSCKDHQKQLAKWQASASQTDWLLPEFDRYQAR
                     TYLDFIGPALARHRDLGDLAGVPAHADISGHPARFAVQMIHSYDLLDDDLEERMEEKS
                     ERLEAIRRGEPVPGSFAFDEKAREQLSWTYPHQEVTQIRTKQSVSEIKRKREYEDEYS
                     GRAPVKPADGSILYRRPAFMMKKGLTAAEKGTAMHTVMQHIPLSHVPSIEEAEQTVHR
                     LYEKELLTEEQKDAIDIEEIVQFFHTEIGGQLIGAKWKDREIPFSLALPAKEIYPDAH
                     EADEPLLVQGIIDCLYETEDGLYLLDYKSDRIEGKFQHGFEGAAPILKKRYETQIQLY
                     TKAVEQIAKTKVKGCALYFFDGGHILTL*"
                     /label="addA CDS"
     gene            1064032..1067730
                     /gene="addA"
                     /locus_tag="BSU_10630"
                     /old_locus_tag="BSU10630"
                     /label="addA gene"
     S_feature       1067731..1067801
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1143506_1143576"
                     /HighExp="H2O2, C90, Heat, LBGtran, dia15, HiTm, Diami,
                     C30, Lbtran, G135"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig=1
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S378"
     CDS             1067802..1068977
                     /gene="sbcD"
                     /locus_tag="BSU_10640"
                     /old_locus_tag="BSU10640"
                     /function="16.6: Maintain"
                     /function="16.9: Replicate"
                     /experiment="publication(s) with functional evidences,
                     PMID:7968921, 8493111, 16780573"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 7968921, 8493111,
                     16780573; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA repair exonuclease"
                     /protein_id="NP_388945.3"
                     /db_xref="EnsemblGenomes-Gn:BSU10640"
                     /db_xref="EnsemblGenomes-Tr:CAB12904"
                     /db_xref="GOA:P23479"
                     /db_xref="InterPro:IPR004593"
                     /db_xref="InterPro:IPR004843"
                     /db_xref="InterPro:IPR026843"
                     /db_xref="InterPro:IPR029052"
                     /db_xref="SubtiList:BG10467"
                     /db_xref="UniProtKB/Swiss-Prot:P23479"
                     /translation="MRILHTADWHLGKTLEGRSRLSEQADVLDELNTIVKDEQIDAIV
                     MAGDAFDTVNPPALAEQLFYESLSALSDRGKRPIVVIAGNHDNPDRLSAASPLTHENG
                     IHLIGYPTTEPIHIEVPSAGELLAVGALAYPSEARLNEVLSDTFDEKLLRDHYDVKIR
                     QAFEHMTSRFRTDAVKIAASHIYVAGGNQTDSERPIEVGGAYTVAAESLPADAAYVAL
                     GHLHRPQTIKRARTLARYSGSPLAYSFSEAGYAKSVTIVDAKPGEEATWQEVLLSSGK
                     PLVKWKAANGLSEVYSWLDEGRDQNAWIDLEIRVADQLSLEEIHRLRKAHPGFIHIRP
                     VFEEQNKDRERIEVKHVSIEDRFKKFYEKQTGGAVPDEEMVKLFLELASGVEEEDAK*
                     "
                     /label="sbcD CDS"
     gene            1067802..1068977
                     /gene="sbcD"
                     /locus_tag="BSU_10640"
                     /old_locus_tag="BSU10640"
                     /label="sbcD gene"
     CDS             1068974..1072366
                     /gene="sbcC"
                     /locus_tag="BSU_10650"
                     /old_locus_tag="BSU10650"
                     /function="16.9: Replicate"
                     /function="16.6: Maintain"
                     /experiment="publication(s) with functional evidences,
                     PMID:16780573, 19906728"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 16780573, 19906728;
                     Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA ATP-dependent repair enzyme"
                     /protein_id="NP_388946.2"
                     /db_xref="EnsemblGenomes-Gn:BSU10650"
                     /db_xref="EnsemblGenomes-Tr:CAB12905"
                     /db_xref="GOA:O06714"
                     /db_xref="InterPro:IPR027417"
                     /db_xref="SubtiList:BG13088"
                     /db_xref="UniProtKB/Swiss-Prot:O06714"
                     /translation="MKPIALSIKGLHSFREEQTIDFEGLSGAGVFGIFGPTGSGKSSI
                     LDAMTLALYGKVERAANNTHGILNHAEDTLSVSFTFALQTNHQISYKVERVFKRTDEM
                     KVKTALCRFIEIKDEHTVLADKASEVNKRVEELLGLTIDDFTRAVVLPQGKFAEFLSL
                     KGAERRHMLQRLFNLEQYGDRLVKKLRRQAQEANARKNEMLAEQSGLGEASSEAVEQA
                     EKVLEQAEARLEAMRKNRDQAKERFTEHQEIWNVQKEKSTYEEEEKRLAEEQPHIDSM
                     QKRLLEAETAAALKPYADRYAEAIQHEEQAEKEQTLAQKDLADRTAFFQQKHEEYEAW
                     RQHKSEKEPELLAKQEQLSRLQEIEIKLSEAKQEEERKKADLRQKEEALQSVMNELET
                     VTDRLTRGQNRQTELKQQLKSLQVTSDERKSCQQAAEMALRIRQTEEQIKKEKKRSEE
                     LNLVLQKMNEEKNTLVQKTEAEENNIIQAYEAVQTVYHLVCETERSLTRMTEEARKSQ
                     HTLHLQREKARVALLTKELAQKLTAGKPCPVCGSTDHDPSASVHETYEADSHLEEDIK
                     RTDVLLTEAAALSQEILSAKIMLEEQSARFIEQCPFLQTIQAQNLEAAASFEHQPVYE
                     AFETAKFEWKRIKQDILSVKTRMAQMIGAYQESLKKAEQLNEKIGFEKREADRIESII
                     SELQSSMDSSLNMFKEAFQNQSVDEAEKWQQAIEEKDRAAEECEKRIEKSIAFLAEHE
                     AQKEKLRESGHRLEREKLELHYAAERIKSVIADYEHELGDYAKGDSIQIKLRSVQQDL
                     KLLKEKEQSLYEELQSAQMKLNQAKSRASASELTLQEAKGRLEKAKAAWLEHTKNTSI
                     TRTEEVEQSLIPADELEKMKTGIDQFMDKLKQNAANLKRVAEILAGRALSESEWNETV
                     AALQEAEDAFGAAIEEKGAAAKALAVIRDHHKRFNEIEAELKKWQMHIDRLDKLQAVF
                     KGNTFVEFLAEEQLESVARDASARLSMLTRQRYAIEVDSEGGFVMRDDANGGVRRPVS
                     SLSGGETFLTSLSLALALSAQIQLRGEYPLQFFFLDEGFGTLDQDLLDTVVTALEKLQ
                     SDNLAVGVISHVQELRARLPKKLIVHPAEPSGRGTRVSLELM*"
                     /label="sbcC CDS"
     gene            1068974..1072366
                     /gene="sbcC"
                     /locus_tag="BSU_10650"
                     /old_locus_tag="BSU10650"
                     /label="sbcC gene"
     promotor_-35    1071621..1071627
                     /Source="Nicolas_upshift_promotors"
                     /id="U861"
                     /multdbtbs="-"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp="0.99000999000999"
                     /psig="0.99000999000999"
                     /xcortree=813
                     /SigmaFactorBS="tgaaaagatgaaaaccggcatagaccagtttaTGGATAAact
                     gaagcaaaatgCTGCAAACTTAAaacgagtagcagagatacttgccggcagagcatta
                     t"
                     /listShort="yisB"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    1071642..1071653
                     /Source="Nicolas_upshift_promotors"
                     /id="U861"
                     /multdbtbs="-"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp="0.99000999000999"
                     /psig="0.99000999000999"
                     /xcortree=813
                     /SigmaFactorBS="tgaaaagatgaaaaccggcatagaccagtttaTGGATAAact
                     gaagcaaaatgCTGCAAACTTAAaacgagtagcagagatacttgccggcagagcatta
                     t"
                     /listShort="yisB"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        1071649
                     /Source="Nicolas_upshifts"
                     /id="U861"
                     /multdbtbs="-"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp="0.99000999000999"
                     /psig="0.99000999000999"
                     /xcortree=813
                     /SigmaFactorBS="tgaaaagatgaaaaccggcatagaccagtttaTGGATAAact
                     gaagcaaaatgCTGCAAACTTAAaacgagtagcagagatacttgccggcagagcatta
                     t"
                     /listShort="yisB"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     S_feature       complement(1071718..1072691)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1147493_1148466_c"
                     /HighExp="S6, S8, S7, BT, C30, B36, S5, C90, Pyr, B60"
                     /AntisenseName="yisB"
                     /AntisenseCor="0.19649597897587401"
                     /AntisenseRegPval="-2.9"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigK"
                     /TUshortPSig=1
                     /TUlongSig="SigK"
                     /TUlongPSig="0.992"
                     /label="S379"
     CDS             1072380..1072682
                     /gene="hlpB"
                     /locus_tag="BSU_10660"
                     /old_locus_tag="BSU10660"
                     /function="16.6: Maintain"
                     /experiment="publication(s) with functional evidences,
                     PMID:16780573, 22984257"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 16780573, 22984257;
                     Product type ph: phenotype"
                     /codon_start=1
                     /transl_table=11
                     /product="HNH nuclease-like essential for DNA repair"
                     /protein_id="NP_388947.1"
                     /db_xref="EnsemblGenomes-Gn:BSU10660"
                     /db_xref="EnsemblGenomes-Tr:CAB12906"
                     /db_xref="SubtiList:BG13089"
                     /db_xref="UniProtKB/Swiss-Prot:O06715"
                     /translation="MAKQIAGICELCGRSDVQLTEHHLTPKEEGGTFLPTAMLCIPCH
                     KQIHALYTNQELAVRLNGMAELRSDPELARFVKWIRKQPPEKLIKTKKSNERKKKK*"
                     /label="hlpB CDS"
     gene            1072380..1072682
                     /gene="hlpB"
                     /locus_tag="BSU_10660"
                     /old_locus_tag="BSU10660"
                     /label="hlpB gene"
     downshifts      1072662
                     /Source="Nicolas_upshifts"
                     /id="D579"
                     /incds=0
                     /nref=230
                     /ntot=269
                     /MaxReadThrough="1.42126"
                     /MaxDrop="6.71114"
                     /score="0.317490594"
                     /energy="-14.3"
                     /TU="NA"
                     /idTUdmin="U861"
                     /TUdmin=1
                     /isTUend="TRUE"
                     /label="downshifts"
     CDS             complement(1072719..1072937)
                     /gene="gerPF"
                     /locus_tag="BSU_10670"
                     /old_locus_tag="BSU10670"
                     /function="16.5: Explore"
                     /function="16.13: Shape"
                     /experiment="publication(s) with functional evidences,
                     PMID:10715007, 20161744"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 10715007, 20161744;
                     Product type cp: cell process"
                     /codon_start=1
                     /transl_table=11
                     /product="spore germination protein"
                     /protein_id="NP_388948.2"
                     /db_xref="EnsemblGenomes-Gn:BSU10670"
                     /db_xref="EnsemblGenomes-Tr:CAB12907"
                     /db_xref="GOA:O06716"
                     /db_xref="InterPro:IPR019618"
                     /db_xref="SubtiList:BG13090"
                     /db_xref="UniProtKB/Swiss-Prot:O06716"
                     /translation="MPAIVGPIAINSISGGVVNFGDSFYLSPKSSSKSALGSGAGNTG
                     DFLLLNNAVNATNYIDPDVNDQDMVGNG*"
                     /label="gerPF CDS"
     gene            complement(1072719..1072937)
                     /gene="gerPF"
                     /locus_tag="BSU_10670"
                     /old_locus_tag="BSU10670"
                     /label="gerPF gene"
     downshifts      complement(1072736)
                     /Source="Nicolas_upshifts"
                     /id="D580"
                     /incds=0
                     /nref=40
                     /ntot=66
                     /MaxReadThrough="3.93344"
                     /MaxDrop="5.39228"
                     /score="13.5435041"
                     /energy="-15.3"
                     /TU="U863"
                     /idTUdmin="U863"
                     /TUdmin="-989"
                     /isTUend="FALSE"
                     /label="downshifts"
     CDS             complement(1072969..1073370)
                     /gene="gerPE"
                     /locus_tag="BSU_10680"
                     /old_locus_tag="BSU10680"
                     /function="16.5: Explore"
                     /function="16.13: Shape"
                     /experiment="publication(s) with functional evidences,
                     PMID:10715007"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 10715007; Product type
                     cp: cell process"
                     /codon_start=1
                     /transl_table=11
                     /product="spore germination protein"
                     /protein_id="NP_388949.1"
                     /db_xref="EnsemblGenomes-Gn:BSU10680"
                     /db_xref="EnsemblGenomes-Tr:CAB12908"
                     /db_xref="GOA:O06717"
                     /db_xref="InterPro:IPR024496"
                     /db_xref="SubtiList:BG13091"
                     /db_xref="UniProtKB/Swiss-Prot:O06717"
                     /translation="MLKRISRIRLVKFNSLGIASVFQVGDTNEIDMSVKVFAVQRSLS
                     TFYHNEGSFNKKEYQIFQQQAVKPLPETGVQSAFCHEVPAIYVRSIKIQGVSASSVLH
                     AGSASLIRGDARLKHIRQIQSPRSQSPAKNI*"
                     /label="gerPE CDS"
     gene            complement(1072969..1073370)
                     /gene="gerPE"
                     /locus_tag="BSU_10680"
                     /old_locus_tag="BSU10680"
                     /label="gerPE gene"
     CDS             complement(1073370..1073546)
                     /gene="gerPD"
                     /locus_tag="BSU_10690"
                     /old_locus_tag="BSU10690"
                     /function="16.5: Explore"
                     /function="16.13: Shape"
                     /experiment="publication(s) with functional evidences,
                     PMID:10715007"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 10715007; Product type
                     cp: cell process"
                     /codon_start=1
                     /transl_table=11
                     /product="spore germination protein"
                     /protein_id="NP_388950.1"
                     /db_xref="EnsemblGenomes-Gn:BSU10690"
                     /db_xref="EnsemblGenomes-Tr:CAB12909"
                     /db_xref="GOA:O06718"
                     /db_xref="InterPro:IPR017257"
                     /db_xref="SubtiList:BG13092"
                     /db_xref="UniProtKB/Swiss-Prot:O06718"
                     /translation="MIFTVINRSLEVGDIRMNGVSSSSVFHIGDTESIYLSSIFDTPP
                     ESLIIGPFAPLAPE*"
                     /label="gerPD CDS"
     gene            complement(1073370..1073546)
                     /gene="gerPD"
                     /locus_tag="BSU_10690"
                     /old_locus_tag="BSU10690"
                     /label="gerPD gene"
     CDS             complement(1073543..1074160)
                     /gene="gerPC"
                     /locus_tag="BSU_10700"
                     /old_locus_tag="BSU10700"
                     /function="16.5: Explore"
                     /function="16.13: Shape"
                     /experiment="publication(s) with functional evidences,
                     PMID:10715007"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 10715007; Product type
                     cp: cell process"
                     /codon_start=1
                     /transl_table=11
                     /product="spore germination protein"
                     /protein_id="NP_388951.1"
                     /db_xref="EnsemblGenomes-Gn:BSU10700"
                     /db_xref="EnsemblGenomes-Tr:CAB12910"
                     /db_xref="GOA:O06719"
                     /db_xref="InterPro:IPR019673"
                     /db_xref="SubtiList:BG13093"
                     /db_xref="UniProtKB/Swiss-Prot:O06719"
                     /translation="MYDQSVSSYLQNLNSFVQQQAIHIQQLERQLKEIQTEMNTMKQR
                     PATTIERVEYKFDQLKIERLDGTLNIGLNPTDPNSVQNFDVSQSTPQIGMMQQEESAQ
                     LMQQIRQNVDMYLTEEIPDILEQLENQYDSRLDDTNRHHVIEDIRKQMDSRIHYYMSH
                     IKKEENTPPAQYAEHIAEHVKRDVIRAVEHFLEHIPSEMKGDEQA*"
                     /label="gerPC CDS"
     gene            complement(1073543..1074160)
                     /gene="gerPC"
                     /locus_tag="BSU_10700"
                     /old_locus_tag="BSU10700"
                     /label="gerPC gene"
     CDS             complement(1074183..1074416)
                     /gene="gerPB"
                     /locus_tag="BSU_10710"
                     /old_locus_tag="BSU10710"
                     /function="16.5: Explore"
                     /function="16.13: Shape"
                     /experiment="publication(s) with functional evidences,
                     PMID:10715007"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 10715007; Product type
                     cp: cell process"
                     /codon_start=1
                     /transl_table=11
                     /product="spore germination protein"
                     /protein_id="NP_388952.2"
                     /db_xref="EnsemblGenomes-Gn:BSU10710"
                     /db_xref="EnsemblGenomes-Tr:CAB12911"
                     /db_xref="GOA:O06720"
                     /db_xref="InterPro:IPR024255"
                     /db_xref="SubtiList:BG13094"
                     /db_xref="UniProtKB/Swiss-Prot:O06720"
                     /translation="MNFYINQTIQINYLRLESISNSSILQIGSAGSIKSLSNLYNTGS
                     YVEPAPEVSGSGQPLQLQEPDTGSLVPLQPPGR*"
                     /label="gerPB CDS"
     gene            complement(1074183..1074416)
                     /gene="gerPB"
                     /locus_tag="BSU_10710"
                     /old_locus_tag="BSU10710"
                     /label="gerPB gene"
     CDS             complement(1074431..1074652)
                     /gene="gerPA"
                     /locus_tag="BSU_10720"
                     /old_locus_tag="BSU10720"
                     /function="16.5: Explore"
                     /function="16.13: Shape"
                     /experiment="publication(s) with functional evidences,
                     PMID:10715007"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 10715007; Product type
                     cp: cell process"
                     /codon_start=1
                     /transl_table=11
                     /product="spore germination protein"
                     /protein_id="NP_388953.1"
                     /db_xref="EnsemblGenomes-Gn:BSU10720"
                     /db_xref="EnsemblGenomes-Tr:CAB12912"
                     /db_xref="GOA:O06721"
                     /db_xref="InterPro:IPR019618"
                     /db_xref="SubtiList:BG13095"
                     /db_xref="UniProtKB/Swiss-Prot:O06721"
                     /translation="MPAIVGAFKINAIGTSGVVHIGDCITISPQAQVRTFAGAGSFNT
                     GDSLKVMNYQNATNVYDNDAVDQPIVANA*"
                     /label="gerPA CDS"
     gene            complement(1074431..1074652)
                     /gene="gerPA"
                     /locus_tag="BSU_10720"
                     /old_locus_tag="BSU10720"
                     /label="gerPA gene"
     S_feature       complement(1074653..1074739)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1150428_1150514_c"
                     /HighExp="S6, S8, S7, S5, BT, B36, B60, G/S, Pyr, nit"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigK"
                     /TUshortPSig=1
                     /TUlongSig="SigK"
                     /TUlongPSig="0.992"
                     /label="S380"
     promotor_-35    1074667..1074673
                     /Source="Nicolas_upshift_promotors"
                     /id="U862"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.473526473526474"
                     /psig="0.733266733266733"
                     /xcortree=136
                     /SigmaFactorBS="aaacgctccgacaatggccggcatacgagcacatccttTGTT
                     GAAaaattaaaaaaagACAGGTAAAGTGAAATGACAattccgatttcaattgggctat
                     t"
                     /listShort="S381, S385"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    1074687..1074706
                     /Source="Nicolas_upshift_promotors"
                     /id="U862"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.473526473526474"
                     /psig="0.733266733266733"
                     /xcortree=136
                     /SigmaFactorBS="aaacgctccgacaatggccggcatacgagcacatccttTGTT
                     GAAaaattaaaaaaagACAGGTAAAGTGAAATGACAattccgatttcaattgggctat
                     t"
                     /listShort="S381, S385"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     S_feature       1074689..1075344
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1150464_1151119"
                     /HighExp="Salt, BC, Sw, S8, Heat, M9-stat, S7, Etha, BMM,
                     Lbtran"
                     /AntisenseName="yisI"
                     /AntisenseCor="3.97396613023396E-2"
                     /AntisenseRegPval="-0.3"
                     /CDS_PredictionProba="0.17396"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.733"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S381"
     upshifts        1074689
                     /Source="Nicolas_upshifts"
                     /id="U862"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.473526473526474"
                     /psig="0.733266733266733"
                     /xcortree=136
                     /SigmaFactorBS="aaacgctccgacaatggccggcatacgagcacatccttTGTT
                     GAAaaattaaaaaaagACAGGTAAAGTGAAATGACAattccgatttcaattgggctat
                     t"
                     /listShort="S381, S385"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-10    complement(1074726..1074745)
                     /Source="Nicolas_upshift_promotors"
                     /id="U863"
                     /multdbtbs="SigK"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp=1
                     /psig=1
                     /xcortree=1293
                     /SigmaFactorBS="ttcacaaagagccgatatgtccccttaaaattTCTCTCACAC
                     atatgtgcgtttGTCATAAGCTATCGTGAATAgcccaattgaaatcggaattgtcatt
                     t"
                     /listShort="S380, gerPA, gerPB, gerPC, gerPD, gerPE,
                     gerPF, S379"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(1074739)
                     /Source="Nicolas_upshifts"
                     /id="U863"
                     /multdbtbs="SigK"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp=1
                     /psig=1
                     /xcortree=1293
                     /SigmaFactorBS="ttcacaaagagccgatatgtccccttaaaattTCTCTCACAC
                     atatgtgcgtttGTCATAAGCTATCGTGAATAgcccaattgaaatcggaattgtcatt
                     t"
                     /listShort="S380, gerPA, gerPB, gerPC, gerPD, gerPE,
                     gerPF, S379"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     S_feature       complement(1074741..1074870)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1150516_1150645_c"
                     /HighExp="S6, S8, S7, T5.0H, T3.30H, T4.0H, S5, T3.0H,
                     T2.30H, T2.0H"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigK"
                     /TUshortPSig="0.992"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S382"
     promotor_-35    complement(1074758..1074767)
                     /Source="Nicolas_upshift_promotors"
                     /id="U863"
                     /multdbtbs="SigK"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp=1
                     /psig=1
                     /xcortree=1293
                     /SigmaFactorBS="ttcacaaagagccgatatgtccccttaaaattTCTCTCACAC
                     atatgtgcgtttGTCATAAGCTATCGTGAATAgcccaattgaaatcggaattgtcatt
                     t"
                     /listShort="S380, gerPA, gerPB, gerPC, gerPD, gerPE,
                     gerPF, S379"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     S_feature       complement(1074872..1075074)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1150647_1150849_c"
                     /HighExp="T5.0H, T4.0H, T3.30H, S6, M9-stat, T3.0H, S8,
                     S7, T2.30H, S5"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA, SigK"
                     /TUshortPSig="0.976, 0.992"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S383"
     downshifts      complement(1074915)
                     /Source="Nicolas_upshifts"
                     /id="D581"
                     /incds=0
                     /nref=13
                     /ntot=116
                     /MaxReadThrough="3.97434"
                     /MaxDrop="3.59184"
                     /score="13.5435041"
                     /energy="-15.3"
                     /TU="U865"
                     /idTUdmin="U864"
                     /TUdmin=0
                     /isTUend="TRUE"
                     /label="downshifts"
     CDS             complement(1075075..1075245)
                     /gene="pchI"
                     /locus_tag="BSU_10730"
                     /old_locus_tag="BSU10730"
                     /function="16.3: Control"
                     /experiment="publication(s) with functional evidences,
                     PMID:11679073, 27542896"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 11679073, 27542896;
                     Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="Spo0A-P phosphatase (iron-metabolism related)"
                     /protein_id="NP_388954.1"
                     /db_xref="EnsemblGenomes-Gn:BSU10730"
                     /db_xref="EnsemblGenomes-Tr:CAB12913"
                     /db_xref="GOA:O06722"
                     /db_xref="InterPro:IPR018540"
                     /db_xref="InterPro:IPR037208"
                     /db_xref="SubtiList:BG13096"
                     /db_xref="UniProtKB/Swiss-Prot:O06722"
                     /translation="MNSKIEEMRITLIETAQKYGMNSKETIQCSQELDILLNTRIKEE
                     MIFGRYLENSRM*"
                     /label="pchI CDS"
     gene            complement(1075075..1075245)
                     /gene="pchI"
                     /locus_tag="BSU_10730"
                     /old_locus_tag="BSU10730"
                     /label="pchI gene"
     misc_feature    complement(1075289..1075308)
                     /Source="Nicolas_upshift_promotors"
                     /id="U864"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.386613386613387"
                     /psig="0.976023976023976"
                     /xcortree=2921
                     /SigmaFactorBS="gcttttttagtcaaattgacgaaaggcaaccttttgagccaa
                     aaTAGGTTATACTAACGATATCctgtatttatatcaaaataaaatctagaattggaga
                     t"
                     /listShort="yisI, S383"
                     /GFF_Attribute="listLong"
                     /label="promotor_single_box"
                     /note="Geneious type: promotor_single_box"
     upshifts        complement(1075292)
                     /Source="Nicolas_upshifts"
                     /id="U864"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.386613386613387"
                     /psig="0.976023976023976"
                     /xcortree=2921
                     /SigmaFactorBS="gcttttttagtcaaattgacgaaaggcaaccttttgagccaa
                     aaTAGGTTATACTAACGATATCctgtatttatatcaaaataaaatctagaattggaga
                     t"
                     /listShort="yisI, S383"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     S_feature       complement(1075294..1075390)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1151069_1151165_c"
                     /HighExp="S6, S8, S7, S5, BT, Pyr, G/S, Glucon, SMMPr,
                     C30"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigK"
                     /TUshortPSig="0.992"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S384"
     downshifts      1075301
                     /Source="Nicolas_upshifts"
                     /id="D582"
                     /incds=0
                     /nref=3
                     /ntot=54
                     /MaxReadThrough="4.52913"
                     /MaxDrop="3.35342"
                     /score="12.6645711"
                     /energy="-10.3"
                     /TU="U862"
                     /idTUdmin="U862"
                     /TUdmin="-176"
                     /isTUend="FALSE"
                     /label="downshifts"
     S_feature       1075346..1075510
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1151121_1151285"
                     /HighExp="Salt, S8, S7, BC, Heat, H2O2, Sw, Oxctl, MG-0.2,
                     MG-0.1"
                     /AntisenseName="yisJ"
                     /AntisenseCor="0.24461808844813801"
                     /AntisenseRegPval="-4.3"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.733"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S385"
     CDS             complement(1075391..1076314)
                     /gene="yisJ"
                     /locus_tag="BSU_10740"
                     /old_locus_tag="BSU10740"
                     /function="16.5: Explore"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; Product type cp: cell process"
                     /codon_start=1
                     /transl_table=11
                     /product="putative spore coat protein, CotH paralog"
                     /protein_id="NP_388955.1"
                     /db_xref="EnsemblGenomes-Gn:BSU10740"
                     /db_xref="EnsemblGenomes-Tr:CAB12914"
                     /db_xref="GOA:O06723"
                     /db_xref="InterPro:IPR014867"
                     /db_xref="SubtiList:BG13097"
                     /db_xref="UniProtKB/Swiss-Prot:O06723"
                     /translation="MERVHLFFHREQLKRKGTAKGLFVTDRSVSPILLTQRDRAEKAS
                     YEISWEKSLLGERTLFLNAEQDDPSLMRRRLAYCFFDQIGVPAPVASYSFLTINGQPE
                     GIYLNIKNHQPAGKRSYGVKTADPRVPLSLFNNDSSAFLHEFFILIRTAGDDELAERI
                     KLYLDVKLFFLWLIGNTCTNQGFYYTFCLNESGRLYVSPMETRSLAVQEWYEEDPLLT
                     KGKTLSSRLLSIPAFRSQYHTLMKNVLKRSFTIERLSPLINEWHLDICQSAADDPFIK
                     KSPFQIEKEQTNILREIEERQDFLQAHLARL*"
                     /label="yisJ CDS"
     gene            complement(1075391..1076314)
                     /gene="yisJ"
                     /locus_tag="BSU_10740"
                     /old_locus_tag="BSU10740"
                     /label="yisJ gene"
     promotor_-10    complement(1076336..1076355)
                     /Source="Nicolas_upshift_promotors"
                     /id="U865"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp="0.992007992007992"
                     /psig="0.992007992007992"
                     /xcortree=1372
                     /SigmaFactorBS="aaatccctttttctcaattccgttttcatTTCGTTTCAGgac
                     gggcttgctcTACATATCATACAAATGTCGttttgagaaggaggaaagaatatggagc
                     g"
                     /listShort="yisJ, S384, yisI, S383, S382"
                     /listLong="S380, gerPA, gerPB, gerPC, gerPD, gerPE, gerPF,
                     S379"
                     /label="promotor_-10"
     upshifts        complement(1076347)
                     /Source="Nicolas_upshifts"
                     /id="U865"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp="0.992007992007992"
                     /psig="0.992007992007992"
                     /xcortree=1372
                     /SigmaFactorBS="aaatccctttttctcaattccgttttcatTTCGTTTCAGgac
                     gggcttgctcTACATATCATACAAATGTCGttttgagaaggaggaaagaatatggagc
                     g"
                     /listShort="yisJ, S384, yisI, S383, S382"
                     /listLong="S380, gerPA, gerPB, gerPC, gerPD, gerPE, gerPF,
                     S379"
                     /label="upshifts"
     promotor_-35    complement(1076369..1076378)
                     /Source="Nicolas_upshift_promotors"
                     /id="U865"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp="0.992007992007992"
                     /psig="0.992007992007992"
                     /xcortree=1372
                     /SigmaFactorBS="aaatccctttttctcaattccgttttcatTTCGTTTCAGgac
                     gggcttgctcTACATATCATACAAATGTCGttttgagaaggaggaaagaatatggagc
                     g"
                     /listShort="yisJ, S384, yisI, S383, S382"
                     /listLong="S380, gerPA, gerPB, gerPC, gerPD, gerPE, gerPF,
                     S379"
                     /label="promotor_-35"
     promotor_-35    1076398..1076406
                     /Source="Nicolas_upshift_promotors"
                     /id="U866"
                     /multdbtbs="-"
                     /comp="M1"
                     /sig="SigH"
                     /pcomp="0.999000999001"
                     /psig="0.999000999001"
                     /xcortree=553
                     /SigmaFactorBS="cccgtcctgaaacgaaatgaaaacggaattgagaaAAAGGGA
                     TTtcagcattcgaCAGAGAATACATGAAGGAGcattctgatttaaaagatgatggagg
                     a"
                     /listShort="yisK, S386, yisL"
                     /listLong="wprA"
                     /label="promotor_-35"
     promotor_-10    1076418..1076436
                     /Source="Nicolas_upshift_promotors"
                     /id="U866"
                     /multdbtbs="-"
                     /comp="M1"
                     /sig="SigH"
                     /pcomp="0.999000999001"
                     /psig="0.999000999001"
                     /xcortree=553
                     /SigmaFactorBS="cccgtcctgaaacgaaatgaaaacggaattgagaaAAAGGGA
                     TTtcagcattcgaCAGAGAATACATGAAGGAGcattctgatttaaaagatgatggagg
                     a"
                     /listShort="yisK, S386, yisL"
                     /listLong="wprA"
                     /label="promotor_-10"
     upshifts        1076423
                     /Source="Nicolas_upshifts"
                     /id="U866"
                     /multdbtbs="-"
                     /comp="M1"
                     /sig="SigH"
                     /pcomp="0.999000999001"
                     /psig="0.999000999001"
                     /xcortree=553
                     /SigmaFactorBS="cccgtcctgaaacgaaatgaaaacggaattgagaaAAAGGGA
                     TTtcagcattcgaCAGAGAATACATGAAGGAGcattctgatttaaaagatgatggagg
                     a"
                     /listShort="yisK, S386, yisL"
                     /listLong="wprA"
                     /label="upshifts"
     CDS             1076469..1077374
                     /gene="mblK"
                     /locus_tag="BSU_10750"
                     /old_locus_tag="BSU10750"
                     /function="16.13: Shape"
                     /experiment="publication(s) with functional evidences,
                     PMID:16847875, 27215790, 22720735"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 16847875, 27215790,
                     22720735; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="hydrolase/isomerase involved in remodelling the
                     bacterial envelope"
                     /protein_id="NP_388956.1"
                     /db_xref="EnsemblGenomes-Gn:BSU10750"
                     /db_xref="EnsemblGenomes-Tr:CAB12915"
                     /db_xref="GOA:O06724"
                     /db_xref="InterPro:IPR011234"
                     /db_xref="InterPro:IPR036663"
                     /db_xref="SubtiList:BG13098"
                     /db_xref="UniProtKB/Swiss-Prot:O06724"
                     /translation="MKFATGELYNRMFVGLIIDDEKIMDLQKAEKKLFELETIPGSLI
                     ECIAEGDKFVAHARQLAEWAKKPNDELGSFMYSLSEVKLHAPIPKPSKNIICIGKNYR
                     DHAIEMGSEADIPEHPMVFTKSPVTVTGHGDIVKSHEEVTSQLDYEGELAVVIGKSGT
                     RISKEDAYDHVFGYTIVNDITARDLQKRHKQFFIGKSLDTTCPMGPVLVHKSSIQEPE
                     RLKVETRVNGELRQSGSASDMIFSIPELIETLSKGMTLEAGDIIATGTPSGVGKGFTP
                     PKFLRSGDKIDITIDPIGTLSNQIG*"
                     /label="mblK CDS"
     gene            1076469..1077374
                     /gene="mblK"
                     /locus_tag="BSU_10750"
                     /old_locus_tag="BSU10750"
                     /label="mblK gene"
     S_feature       1077375..1077455
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1153150_1153230"
                     /HighExp="S2, Lbstat, S1, Etha, SMMPr, M0t90, M40t90,
                     LoTm, T-4.40H, nit"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigH"
                     /TUshortPSig="0.999"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S386"
     promotor_-35    1077425..1077428
                     /Source="Nicolas_upshift_promotors"
                     /id="U867"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.851148851148851"
                     /psig=1
                     /xcortree=2462
                     /SigmaFactorBS="gacccgcccgttttttctgataatcatcTTTGtgacagagga
                     caagttCATGGTACTATAAGTGGGGTaatttatctgatagggggaacatatatgacac
                     a"
                     /listShort="yisL"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    1077445..1077464
                     /Source="Nicolas_upshift_promotors"
                     /id="U867"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.851148851148851"
                     /psig=1
                     /xcortree=2462
                     /SigmaFactorBS="gacccgcccgttttttctgataatcatcTTTGtgacagagga
                     caagttCATGGTACTATAAGTGGGGTaatttatctgatagggggaacatatatgacac
                     a"
                     /listShort="yisL"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        1077457
                     /Source="Nicolas_upshifts"
                     /id="U867"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.851148851148851"
                     /psig=1
                     /xcortree=2462
                     /SigmaFactorBS="gacccgcccgttttttctgataatcatcTTTGtgacagagga
                     caagttCATGGTACTATAAGTGGGGTaatttatctgatagggggaacatatatgacac
                     a"
                     /listShort="yisL"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             1077490..1077846
                     /gene="yisL"
                     /locus_tag="BSU_10760"
                     /old_locus_tag="BSU10760"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 15849754, 16850406,
                     27215790; Product type m: membrane component"
                     /codon_start=1
                     /transl_table=11
                     /product="putative integral membrane protein"
                     /protein_id="NP_388957.1"
                     /db_xref="EnsemblGenomes-Gn:BSU10760"
                     /db_xref="EnsemblGenomes-Tr:CAB12916"
                     /db_xref="GOA:O06725"
                     /db_xref="InterPro:IPR010899"
                     /db_xref="SubtiList:BG13099"
                     /db_xref="UniProtKB/Swiss-Prot:O06725"
                     /translation="MTHLHITTWVVALILLFVSYSLYSSGSAKGAKITHMILRLFYIL
                     IILTGAELFVRFANWNGEYAGKMILGIITIGLMEMLLIRKKKEKSTGGLWVGFVIVLL
                     LTVLLGLHLPIGFQLF*"
                     /label="yisL CDS"
     gene            1077490..1077846
                     /gene="yisL"
                     /locus_tag="BSU_10760"
                     /old_locus_tag="BSU10760"
                     /label="yisL gene"
     downshifts      1077743
                     /Source="Nicolas_upshifts"
                     /id="D583"
                     /incds=1
                     /nref=1
                     /ntot=44
                     /MaxReadThrough="4.28837"
                     /MaxDrop="2.46999"
                     /score="41.4247437"
                     /energy="-11.7"
                     /TU="U866,U867"
                     /idTUdmin="U867"
                     /TUdmin="-88"
                     /isTUend="FALSE"
                     /label="downshifts"
     downshifts      1077834
                     /Source="Nicolas_upshifts"
                     /id="D584"
                     /incds=0
                     /nref=17
                     /ntot=162
                     /MaxReadThrough="3.06092"
                     /MaxDrop="3.41506"
                     /score="41.4247437"
                     /energy="-11.7"
                     /TU="U866"
                     /idTUdmin="U867"
                     /TUdmin=3
                     /isTUend="TRUE"
                     /label="downshifts"
     upshifts        1077967
                     /Source="Nicolas_upshifts"
                     /id="U868"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.486513486513487"
                     /psig="0.732267732267732"
                     /xcortree=2782
                     /SigmaFactorBS="atattccaaatcatttaaaataaccttaaaattccctgtaag
                     cggtatctcgtcctatgaaatTATGATACCTTCAAGGAGATtcattattttgcaggag
                     g"
                     /listShort="wprA"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     misc_feature    1077970..1077989
                     /Source="Nicolas_upshift_promotors"
                     /id="U868"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.486513486513487"
                     /psig="0.732267732267732"
                     /xcortree=2782
                     /SigmaFactorBS="atattccaaatcatttaaaataaccttaaaattccctgtaag
                     cggtatctcgtcctatgaaatTATGATACCTTCAAGGAGATtcattattttgcaggag
                     g"
                     /listShort="wprA"
                     /GFF_Attribute="listLong"
                     /label="promotor_single_box"
                     /note="Geneious type: promotor_single_box"
     CDS             1078014..1080698
                     /gene="wprA"
                     /locus_tag="BSU_10770"
                     /old_locus_tag="BSU10770"
                     /EC_number="3.4.21.-"
                     /function="16.11: Scavenge (Catabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:9004506, 9675284, 10336490, 15205417, 17269748,
                     21636651, 23180473, 25313396"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 9004506, 9675284,
                     10336490, 15205417, 17269748, 21636651, 23180473,
                     25313396; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="cell wall-associated protease"
                     /protein_id="NP_388958.1"
                     /db_xref="EnsemblGenomes-Gn:BSU10770"
                     /db_xref="EnsemblGenomes-Tr:CAB12917"
                     /db_xref="GOA:P54423"
                     /db_xref="InterPro:IPR000209"
                     /db_xref="InterPro:IPR015500"
                     /db_xref="InterPro:IPR022398"
                     /db_xref="InterPro:IPR023828"
                     /db_xref="InterPro:IPR034084"
                     /db_xref="InterPro:IPR036852"
                     /db_xref="SubtiList:BG11846"
                     /db_xref="UniProtKB/Swiss-Prot:P54423"
                     /translation="MKRRKFSSVVAAVLIFALIFSLFSPGTKAAAAGAIDQAAALENG
                     KEQTGAMKEPEQVKWYKVTPGATDIQKNSHMALTVKSDSVLNVSVYPSKEKALKDETF
                     EMYRSFTAEDGKSEVIFPYAWSGPYYVKVEYLGEEEPEDGGTAEAAAEAKYTIGYKGT
                     KKQPSDLEEEEACPVEMSVDQKKSGKGILDKLRSIRDEQLSQTAEGKELTSLYYKAAP
                     FIVAKLALNKTARNEIYQDLVTLKPLFDDVSENGASSSYKVTEKDQKAINRLYDKALQ
                     SVPSFLKEEIKKQADRLNMKQLQGKTAGAILTENNIAAKSEVQTTKVIFKVKDNKSLS
                     SVHNEMKGFSASAQSKKDISNVKKAKKLFDNLYSFELPKDEKQNGAYTASAKRVKSAA
                     ATLSKMSNVEFAEPVQEYKSLANDIQYPYQWPLKNNGENGGVKNADVKYEPANTLLSK
                     RKLNDTLIAVVDTGVDSTLADLKGKVRTDLGHNFVGRNNNAMDDQGHGTHVAGIIAAQ
                     SDNGYSMTGLNAKAKIIPVKVLDSAGSGDTEQIALGIKYAADKGAKVINLSLGGGYSR
                     VLEFALKYAADKNVLIAAASGNDGENALSYPASSKYVMSVGATNRMDMTADFSNYGKG
                     LDISAPGSDIPSLVPNGNVTYMSGTSMATPYAAAAAGLLFAQNPKLKRTEVEDMLKKT
                     ADDISFESVDGGEEELYDDYGDPIEIPKTPGVDWHSGYGRLNVMKAVSAADLQLKVNK
                     LESTQTAVRGSAKEGTLIEVMNGKKKLGSAKAGKDNAFKVNIATQKQDQVLYLKATKG
                     DAKTSYKVVVVKGKPSGTPKVNAVKTKDTAVKGKANSKAMIRVKNKSKKVIASAKADA
                     KGTFSVKIKKQKAGTVLYVTAVDTDKKESKEAKVVVEK*"
                     /label="wprA CDS"
     gene            1078014..1080698
                     /gene="wprA"
                     /locus_tag="BSU_10770"
                     /old_locus_tag="BSU10770"
                     /label="wprA gene"
     downshifts      complement(1078182)
                     /Source="Nicolas_upshifts"
                     /id="D585"
                     /incds=1
                     /nref=2
                     /ntot=155
                     /MaxReadThrough="0.14981"
                     /MaxDrop="3.98572"
                     /score="9.01750245"
                     /energy="-8"
                     /TU="NA"
                     /idTUdmin="U869"
                     /TUdmin=2563
                     /isTUend="FALSE"
                     /label="downshifts"
     downshifts      1080690
                     /Source="Nicolas_upshifts"
                     /id="D586"
                     /incds=0
                     /nref=239
                     /ntot=267
                     /MaxReadThrough="1.55031"
                     /MaxDrop="8.31576"
                     /score="36.3638154"
                     /energy="-12.3"
                     /TU="NA"
                     /idTUdmin="U868"
                     /TUdmin="-1"
                     /isTUend="TRUE"
                     /label="downshifts"
     CDS             complement(1080729..1081316)
                     /gene="yisN"
                     /locus_tag="BSU_10780"
                     /old_locus_tag="BSU10780"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved hypothetical protein"
                     /protein_id="NP_388959.1"
                     /db_xref="EnsemblGenomes-Gn:BSU10780"
                     /db_xref="EnsemblGenomes-Tr:CAB12918"
                     /db_xref="InterPro:IPR024488"
                     /db_xref="SubtiList:BG12239"
                     /db_xref="UniProtKB/Swiss-Prot:O06727"
                     /translation="MKKKETAWMKRKQLLYTEERKWEYGTILIEDGICLIENGEGDIL
                     LADSLQHSPIWIHHKGKWEQAGFQDKLVLACGAENISLSGGERIRYEKSVKRPLMALL
                     DSLDDETFLAFLQHLHSFGLSVFDCVFSYNKGVFSNTSAGQGVSFYHFSNDTAQCAMQ
                     HHYNYSSEGTGDRFEWTASNGKRSIMYTAVQRGRK*"
                     /label="yisN CDS"
     gene            complement(1080729..1081316)
                     /gene="yisN"
                     /locus_tag="BSU_10780"
                     /old_locus_tag="BSU10780"
                     /label="yisN gene"
     promotor_-10    complement(1081331..1081350)
                     /Source="Nicolas_upshift_promotors"
                     /id="U869"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.561438561438561"
                     /psig="0.561438561438561"
                     /xcortree=1023
                     /SigmaFactorBS="caccttagtaagtttatgcatctataggcagatagttgattt
                     GTCcataaaagagttgtaTGGGACAGGCTTGAATTGGAaagaaaagagaggaatgaag
                     a"
                     /listShort="yisN"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(1081350)
                     /Source="Nicolas_upshifts"
                     /id="U869"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.561438561438561"
                     /psig="0.561438561438561"
                     /xcortree=1023
                     /SigmaFactorBS="caccttagtaagtttatgcatctataggcagatagttgattt
                     GTCcataaaagagttgtaTGGGACAGGCTTGAATTGGAaagaaaagagaggaatgaag
                     a"
                     /listShort="yisN"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(1081366..1081368)
                     /Source="Nicolas_upshift_promotors"
                     /id="U869"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.561438561438561"
                     /psig="0.561438561438561"
                     /xcortree=1023
                     /SigmaFactorBS="caccttagtaagtttatgcatctataggcagatagttgattt
                     GTCcataaaagagttgtaTGGGACAGGCTTGAATTGGAaagaaaagagaggaatgaag
                     a"
                     /listShort="yisN"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-35    1081371..1081377
                     /Source="Nicolas_upshift_promotors"
                     /id="U870"
                     /multdbtbs="SigE"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.543456543456543"
                     /psig="0.543456543456543"
                     /xcortree=1061
                     /SigmaFactorBS="tttccaattcaagcctgtcccatacaactcttttatggacaa
                     ATCAACTatctgcctatagatGCATAAACTTACTAAGGTGctgaaagaaacgaaattg
                     t"
                     /listShort="S387, asnO, S388"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     upshifts        1081389
                     /Source="Nicolas_upshifts"
                     /id="U870"
                     /multdbtbs="SigE"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.543456543456543"
                     /psig="0.543456543456543"
                     /xcortree=1061
                     /SigmaFactorBS="tttccaattcaagcctgtcccatacaactcttttatggacaa
                     ATCAACTatctgcctatagatGCATAAACTTACTAAGGTGctgaaagaaacgaaattg
                     t"
                     /listShort="S387, asnO, S388"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-10    1081392..1081410
                     /Source="Nicolas_upshift_promotors"
                     /id="U870"
                     /multdbtbs="SigE"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.543456543456543"
                     /psig="0.543456543456543"
                     /xcortree=1061
                     /SigmaFactorBS="tttccaattcaagcctgtcccatacaactcttttatggacaa
                     ATCAACTatctgcctatagatGCATAAACTTACTAAGGTGctgaaagaaacgaaattg
                     t"
                     /listShort="S387, asnO, S388"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     S_feature       1081395..1081461
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1157170_1157236"
                     /HighExp="S6, S5, S7, S8, B36, S4, BT, G/S, B60, Pyr"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigEF"
                     /TUshortPSig="0.543"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S387"
     CDS             1081462..1083306
                     /gene="asnO"
                     /locus_tag="BSU_10790"
                     /old_locus_tag="BSU10790"
                     /EC_number="6.3.5.4"
                     /function="16.5: Explore"
                     /function="16.2: Construct biomass (Anabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:10498721, 26735940"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 10498721, 26735940;
                     Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="asparagine synthetase (sporulation related)"
                     /protein_id="NP_388960.2"
                     /db_xref="EnsemblGenomes-Gn:BSU10790"
                     /db_xref="EnsemblGenomes-Tr:CAB12919"
                     /db_xref="GOA:O05272"
                     /db_xref="InterPro:IPR001962"
                     /db_xref="InterPro:IPR006426"
                     /db_xref="InterPro:IPR014729"
                     /db_xref="InterPro:IPR017932"
                     /db_xref="InterPro:IPR029055"
                     /db_xref="InterPro:IPR033738"
                     /db_xref="SubtiList:BG12240"
                     /db_xref="UniProtKB/Swiss-Prot:O05272"
                     /translation="MCGITGWVDFKKQLVQEKQTMDRMTDTLSKRGPDDSNVWGEHHV
                     LFGHKRLAVVDIEGGRQPMACTYKGDTYTIIYNGELYNTEDLRKELRARGHQFERTSD
                     TEVLLHSYIEWQEDCVDHLNGIFAFAVWDEKRNLLFAARDRLGVKPFFYTKEGSSFLF
                     GSEIKAILAHPDIKARVDRTGLSEIFGLGPSRTPGTGIFKGIKEIRPAHALTFSKDGL
                     NIWRYWNVESEKHTDSFDDTVANVRSLFQDAVTRQLVSDVPVCTFLSGGLDSSAITAI
                     AAGHFEKEGKAPLHTYSIDYEENDKYFQASAFQPNDDGPWIEKMTEAFGTTHHKCVIS
                     QKDLVDHLEEAVLVKDLPGMADVDSSLLWFCREIKKDFVVSLSGECADEIFGGYPWFH
                     TADVESGFPWMRSTEERIKLLSDSWQKKLNLKEYVNAKYEETLAETPLLDGETGVDKA
                     RRQLFYLNMLWFMTNLLDRKDRMSMGASLEVRVPFADHRLVEYVWNIPWEMKMHDNRE
                     KGILRKALEGILPDDILYRKKSPYPKTHHPEYTKGVSEWLKTIRSQKDSVLHTLLDRK
                     QLDQLLETEGSSFKVPWFGQLMKGPQLIAHLAQIHTWFEAYRIDIDER*"
                     /label="asnO CDS"
     gene            1081462..1083306
                     /gene="asnO"
                     /locus_tag="BSU_10790"
                     /old_locus_tag="BSU10790"
                     /label="asnO gene"
     S_feature       1083307..1083374
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1159082_1159149"
                     /HighExp="S6, S5, S7, B36, BT, S8, S4, B60, S3, Pyr"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigEF"
                     /TUshortPSig="0.543"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S388"
     downshifts      1083331
                     /Source="Nicolas_upshifts"
                     /id="D587"
                     /incds=0
                     /nref=12
                     /ntot=43
                     /MaxReadThrough="3.29969"
                     /MaxDrop="4.67478"
                     /score="3.55879494"
                     /energy="-14.8"
                     /TU="U870"
                     /idTUdmin="U870"
                     /TUdmin="-550"
                     /isTUend="FALSE"
                     /label="downshifts"
     CDS             complement(1083436..1083915)
                     /gene="yizA"
                     /locus_tag="BSU_10800"
                     /old_locus_tag="BSU10800"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved hypothetical protein (sporulation
                     related)"
                     /protein_id="YP_054576.1"
                     /db_xref="EnsemblGenomes-Gn:BSU10800"
                     /db_xref="EnsemblGenomes-Tr:CAE01451"
                     /db_xref="GOA:Q7WY73"
                     /db_xref="InterPro:IPR007837"
                     /db_xref="InterPro:IPR034660"
                     /db_xref="PDB:2QE9"
                     /db_xref="SubtiList:BG14187"
                     /db_xref="UniProtKB/Swiss-Prot:Q7WY73"
                     /translation="MMKFFEYNWQVRDQWFTWCHQLTTEELLKNRLGGVENILYTLFH
                     IIDVEYSWIRAIQGKEDIAVQFADYQTLNKVKSLSNTFRTEIIDVLQTHSDQIKDELV
                     SVPWETGVLYTRDEILHHIIAHEIHHIGQLSVWARELKLSPVSASFIGRTLKPIHSY*
                     "
                     /label="yizA CDS"
     gene            complement(1083436..1083915)
                     /gene="yizA"
                     /locus_tag="BSU_10800"
                     /old_locus_tag="BSU10800"
                     /label="yizA gene"
     upshifts        complement(1083935)
                     /Source="Nicolas_upshifts"
                     /id="U871"
                     /multdbtbs="-"
                     /comp="M1"
                     /sig="SigH"
                     /pcomp="0.701298701298701"
                     /psig="0.701298701298701"
                     /xcortree=530
                     /SigmaFactorBS="caatcatcacttcattaatAGAGGAATCacggaaaaaaGGGC
                     TAATTGTTATGATACatgatagtattggagtgagtttagtgatgaaattttttgaata
                     t"
                     /listShort="yizA"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-10    complement(1083939..1083957)
                     /Source="Nicolas_upshift_promotors"
                     /id="U871"
                     /multdbtbs="-"
                     /comp="M1"
                     /sig="SigH"
                     /pcomp="0.701298701298701"
                     /psig="0.701298701298701"
                     /xcortree=530
                     /SigmaFactorBS="caatcatcacttcattaatAGAGGAATCacggaaaaaaGGGC
                     TAATTGTTATGATACatgatagtattggagtgagtttagtgatgaaattttttgaata
                     t"
                     /listShort="yizA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     promotor_-35    complement(1083968..1083976)
                     /Source="Nicolas_upshift_promotors"
                     /id="U871"
                     /multdbtbs="-"
                     /comp="M1"
                     /sig="SigH"
                     /pcomp="0.701298701298701"
                     /psig="0.701298701298701"
                     /xcortree=530
                     /SigmaFactorBS="caatcatcacttcattaatAGAGGAATCacggaaaaaaGGGC
                     TAATTGTTATGATACatgatagtattggagtgagtttagtgatgaaattttttgaata
                     t"
                     /listShort="yizA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-35    1084107..1084111
                     /Source="Nicolas_upshift_promotors"
                     /id="U872"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.338661338661339"
                     /psig="0.988011988011988"
                     /xcortree=2373
                     /SigmaFactorBS="tgcgtcttgttacttttacaaagtaagaatcggcattttctt
                     cATATAcaattaggaaaaaaCATACTAGACTTGAAGAAGCagtgatacataggagtga
                     g"
                     /listShort="yisP"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     upshifts        1084124
                     /Source="Nicolas_upshifts"
                     /id="U872"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.338661338661339"
                     /psig="0.988011988011988"
                     /xcortree=2373
                     /SigmaFactorBS="tgcgtcttgttacttttacaaagtaagaatcggcattttctt
                     cATATAcaattaggaaaaaaCATACTAGACTTGAAGAAGCagtgatacataggagtga
                     g"
                     /listShort="yisP"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-10    1084126..1084145
                     /Source="Nicolas_upshift_promotors"
                     /id="U872"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.338661338661339"
                     /psig="0.988011988011988"
                     /xcortree=2373
                     /SigmaFactorBS="tgcgtcttgttacttttacaaagtaagaatcggcattttctt
                     cATATAcaattaggaaaaaaCATACTAGACTTGAAGAAGCagtgatacataggagtga
                     g"
                     /listShort="yisP"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     CDS             1084147..1084971
                     /gene="farP"
                     /locus_tag="BSU_10810"
                     /old_locus_tag="BSU10810"
                     /EC_number="3.6.1.27"
                     /experiment="publication(s) with functional evidences,
                     PMID:23295493, 25308276"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 23295493, 25308276;
                     Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="farnesyl diphosphate phosphatase"
                     /protein_id="NP_388961.1"
                     /db_xref="EnsemblGenomes-Gn:BSU10810"
                     /db_xref="EnsemblGenomes-Tr:CAB12920"
                     /db_xref="GOA:O06728"
                     /db_xref="InterPro:IPR002060"
                     /db_xref="InterPro:IPR008949"
                     /db_xref="PDB:3WE9"
                     /db_xref="SubtiList:BG12241"
                     /db_xref="UniProtKB/Swiss-Prot:O06728"
                     /translation="MIHRSEKMKEIKEAYQQCGQIVGEYAPACFKALSYLPLKQRQAS
                     WAVLSFCHTAASADEKVLPAFEAKADHVYQRTNNGKQHLWKAFDHAYRTFTLESEPFR
                     EFIAAQKEDAKPYDDLDELLMYAYRTGGAAGLMLLPILTRRKQDQLKQAAVSLGLAIQ
                     LVRFLSDLGTDQQKNRIPRQVMQQFGYTEADLQKGTVNKAFTMTWEYIAFEAEAYLEE
                     CQDALPLFPQYSQKTVKAALHLHRAVLEKIRAKQHDVFQYHFALTETEVKQILSDI*"
                     /label="farP CDS"
     gene            1084147..1084971
                     /gene="farP"
                     /locus_tag="BSU_10810"
                     /old_locus_tag="BSU10810"
                     /label="farP gene"
     promotor_-35    1084359..1084365
                     /Source="Nicolas_upshift_promotors"
                     /id="U873"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp=1
                     /psig=1
                     /xcortree=261
                     /SigmaFactorBS="gtattgcccgcatttgaagctaaagctgatcaTGTTTACcaa
                     aggacaaataaCGGTAAACAACATCTATGGaaggcttttgatcatgcgtatcggacct
                     t"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    1084380..1084398
                     /Source="Nicolas_upshift_promotors"
                     /id="U873"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp=1
                     /psig=1
                     /xcortree=261
                     /SigmaFactorBS="gtattgcccgcatttgaagctaaagctgatcaTGTTTACcaa
                     aggacaaataaCGGTAAACAACATCTATGGaaggcttttgatcatgcgtatcggacct
                     t"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        1084387
                     /Source="Nicolas_upshifts"
                     /id="U873"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp=1
                     /psig=1
                     /xcortree=261
                     /SigmaFactorBS="gtattgcccgcatttgaagctaaagctgatcaTGTTTACcaa
                     aggacaaataaCGGTAAACAACATCTATGGaaggcttttgatcatgcgtatcggacct
                     t"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     S_feature       1084981..1086431
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1160756_1162206"
                     /HighExp="Salt, Etha, Sw, Cold, G150, G180, G135, LBGtran,
                     Heat, Paraq"
                     /AntisenseName="yisQ"
                     /AntisenseCor="0.19511630802652"
                     /AntisenseRegPval="-2.9"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="NA"
                     /TUshortPSig="NA"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S389"
     CDS             complement(1085001..1086368)
                     /gene="yisQ"
                     /locus_tag="BSU_10820"
                     /old_locus_tag="BSU10820"
                     /function="16.1: Circulate"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 15849754, 16850406,
                     17114254; Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="putative Na(+)-driven efflux transporter"
                     /protein_id="NP_388962.1"
                     /db_xref="EnsemblGenomes-Gn:BSU10820"
                     /db_xref="EnsemblGenomes-Tr:CAB12921"
                     /db_xref="GOA:O07940"
                     /db_xref="InterPro:IPR002528"
                     /db_xref="SubtiList:BG12242"
                     /db_xref="UniProtKB/Swiss-Prot:O07940"
                     /translation="MKQAVFKSTALKKPADKTFSLFSLTWPIFIEVSLYMFMGNADTL
                     MLSQYSDNSVAAVGVSNQILNLIIVMFSFIATGTTVIISQFLGSRQKKEAMEVAYVSI
                     GANFFISLAISAVVFFAAVPLLHMMGLSDALMPDAKVFLQVVGGLSFIQALIMTFSAI
                     LKSYGYTKDTMFVTIGMNILNIAGNFVVIFGLFGFPVLGVAGVAMSTSIARVIGLIAM
                     IVIVNKRIQLKMSLKKVFHMHKEHLRKLLKIGIPSAGEQLSYNLSQMIVTYFIAIMGA
                     QALTTKVYTQNITMFILLFGTAISQGTQILIGRYIGGKQFDAAYERCMKSLYWALGIA
                     AATSVLMTIFSKDLIGLFTQSPDIIATASLLIAMTIILEPGRSFNVIIINSLRAAGDA
                     KFPVYMAMISMWGIGLPLAYLFGIHLGFGLAGIWISFIADEWVRGILMYRRWRSRIWI
                     QKGMA*"
                     /label="yisQ CDS"
     gene            complement(1085001..1086368)
                     /gene="yisQ"
                     /locus_tag="BSU_10820"
                     /old_locus_tag="BSU10820"
                     /label="yisQ gene"
     promotor_-35    1086400..1086407
                     /Source="Nicolas_upshift_promotors"
                     /id="U874"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.663336663336663"
                     /psig="0.993006993006993"
                     /xcortree=2737
                     /SigmaFactorBS="tctaacccctttcgtaaataaaatcaaCGTTTTAAagtgtac
                     ctccatTTCCTTATAATAAAAAGGGAtagaaacgatacttcttgtaaaaatccgactt
                     a"
                     /listShort="yisR, degA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    1086421..1086440
                     /Source="Nicolas_upshift_promotors"
                     /id="U874"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.663336663336663"
                     /psig="0.993006993006993"
                     /xcortree=2737
                     /SigmaFactorBS="tctaacccctttcgtaaataaaatcaaCGTTTTAAagtgtac
                     ctccatTTCCTTATAATAAAAAGGGAtagaaacgatacttcttgtaaaaatccgactt
                     a"
                     /listShort="yisR, degA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        1086433
                     /Source="Nicolas_upshifts"
                     /id="U874"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.663336663336663"
                     /psig="0.993006993006993"
                     /xcortree=2737
                     /SigmaFactorBS="tctaacccctttcgtaaataaaatcaaCGTTTTAAagtgtac
                     ctccatTTCCTTATAATAAAAAGGGAtagaaacgatacttcttgtaaaaatccgactt
                     a"
                     /listShort="yisR, degA"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             1086492..1087355
                     /gene="yisR"
                     /locus_tag="BSU_10830"
                     /old_locus_tag="BSU10830"
                     /function="16.3: Control"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 10704478; Product type
                     r: regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="putative transcriptional regulator (AraC/XylS
                     family)"
                     /protein_id="NP_388963.1"
                     /db_xref="EnsemblGenomes-Gn:BSU10830"
                     /db_xref="EnsemblGenomes-Tr:CAB12922"
                     /db_xref="GOA:P40331"
                     /db_xref="InterPro:IPR003313"
                     /db_xref="InterPro:IPR009057"
                     /db_xref="InterPro:IPR014710"
                     /db_xref="InterPro:IPR018060"
                     /db_xref="InterPro:IPR018062"
                     /db_xref="SubtiList:BG11064"
                     /db_xref="UniProtKB/Swiss-Prot:P40331"
                     /translation="MPRILFTVPPFPVFIAAGEGVFKKGETHVKRVFSVFDLIYVKQG
                     TLYITENETSFSVEGGEYILLSPGLEHYGTKGSDEATSYYWLHFDEHRYEFTAKGGSN
                     WSELQQEKGSFEELARYGLALPRKGKVQRPQFMAQQFEKLIDYSAENSDLPLRKQILF
                     EELMLHLQKEAFQIPSAKERVAWEAARYLQEHYKEKTTIKDLSLALHYHQDYVSRCMQ
                     QVLGVTPAQYTNRVRMTEAKRLLSSTNDKMGVIAETVGMEDPTYFSKLFKQIEGISPI
                     EYRKIVSRKVQ*"
                     /label="yisR CDS"
     gene            1086492..1087355
                     /gene="yisR"
                     /locus_tag="BSU_10830"
                     /old_locus_tag="BSU10830"
                     /label="yisR gene"
     CDS             1087373..1088386
                     /gene="iolQ"
                     /locus_tag="BSU_10840"
                     /old_locus_tag="BSU10840"
                     /function="16.6: Maintain"
                     /function="16.3: Control"
                     /experiment="publication(s) with functional evidences,
                     PMID:8407808, 23504016, 28693424"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 8407808, 23504016,
                     28693424; Product type r: regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional repressor of iolX (LacI family)"
                     /protein_id="NP_388964.1"
                     /db_xref="EnsemblGenomes-Gn:BSU10840"
                     /db_xref="EnsemblGenomes-Tr:CAB12923"
                     /db_xref="GOA:P37947"
                     /db_xref="InterPro:IPR000843"
                     /db_xref="InterPro:IPR010982"
                     /db_xref="InterPro:IPR028082"
                     /db_xref="SubtiList:BG10847"
                     /db_xref="UniProtKB/Swiss-Prot:P37947"
                     /translation="MKTTIYDVAKAAGVSITTVSRVINNTGRISDKTRQKVMNVMNEM
                     AYTPNVHAAALTGKRTNMIALVAPDISNPFYGELAKSIEERADELGFQMLICSTDYDP
                     KKETKYFSVLKQKKVDGIIFATGIESHDSMSALEEIASEQIPIAMISQDKPLLPMDIV
                     VIDDVRGGYEAAKHLLSLGHTNIACIIGDGSTTGEKNRIKGFRQAMEEAGVPIDESLI
                     IQTRFSLESGKEEAGKLLDRNAPTAIFAFNDVLACAAIQAARIRGIKVPDDLSIIGFD
                     NTILAEMAAPPLTTVAQPIKEMGRSVIELLAEAIEGKRKAKQKIVLPPELVVRHSTSP
                     LNT*"
                     /label="iolQ CDS"
     gene            1087373..1088386
                     /gene="iolQ"
                     /locus_tag="BSU_10840"
                     /old_locus_tag="BSU10840"
                     /label="iolQ gene"
     downshifts      1088369
                     /Source="Nicolas_upshifts"
                     /id="D588"
                     /incds=0
                     /nref=13
                     /ntot=204
                     /MaxReadThrough="0.51227"
                     /MaxDrop="3.29173"
                     /score="25.1260914"
                     /energy="-9.6"
                     /TU="NA"
                     /idTUdmin="U874"
                     /TUdmin=22
                     /isTUend="TRUE"
                     /label="downshifts"
     promotor_-35    1088438..1088445
                     /Source="Nicolas_upshift_promotors"
                     /id="U875"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.91008991008991"
                     /psig="0.988011988011988"
                     /xcortree=334
                     /SigmaFactorBS="agttgaagccaaaaaaacaTATTGCGTgtaaaccaaaggcgG
                     TGTAAAATATAACCATCTTttgagaaagcgcttgcgcaaaatggcagagcggatagaa
                     c"
                     /listShort="S390, yisS"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    1088460..1088479
                     /Source="Nicolas_upshift_promotors"
                     /id="U875"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.91008991008991"
                     /psig="0.988011988011988"
                     /xcortree=334
                     /SigmaFactorBS="agttgaagccaaaaaaacaTATTGCGTgtaaaccaaaggcgG
                     TGTAAAATATAACCATCTTttgagaaagcgcttgcgcaaaatggcagagcggatagaa
                     c"
                     /listShort="S390, yisS"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     S_feature       1088479..1088594
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1164254_1164369"
                     /HighExp="Lbstat, M40t90, M0t90, BI, G150, dia0, Mt0,
                     Lbexp, Lbtran, dia5"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.988"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S390"
     upshifts        1088479
                     /Source="Nicolas_upshifts"
                     /id="U875"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.91008991008991"
                     /psig="0.988011988011988"
                     /xcortree=334
                     /SigmaFactorBS="agttgaagccaaaaaaacaTATTGCGTgtaaaccaaaggcgG
                     TGTAAAATATAACCATCTTttgagaaagcgcttgcgcaaaatggcagagcggatagaa
                     c"
                     /listShort="S390, yisS"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             1088595..1089623
                     /gene="iolX"
                     /locus_tag="BSU_10850"
                     /old_locus_tag="BSU10850"
                     /EC_number="1.1.1.370"
                     /function="16.11: Scavenge (Catabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:11160890, 20133360, 23109554, 23504016, 28693424"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 11160890, 20133360,
                     23109554, 23504016, 28693424; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="scyllo-inositol 2-dehydrogenase (NAD(+))"
                     /protein_id="NP_388965.1"
                     /db_xref="EnsemblGenomes-Gn:BSU10850"
                     /db_xref="EnsemblGenomes-Tr:CAB12924"
                     /db_xref="GOA:P40332"
                     /db_xref="InterPro:IPR000683"
                     /db_xref="InterPro:IPR004104"
                     /db_xref="InterPro:IPR036291"
                     /db_xref="SubtiList:BG11065"
                     /db_xref="UniProtKB/Swiss-Prot:P40332"
                     /translation="MEHQVRCAVLGLGRLGYYHAKNLVTSVPGAKLVCVGDPLKGRAE
                     QVARELGIEKWSEDPYEVLEDPGIDAVIIVTPTSTHGDMIIKAAENGKQIFVEKPLTL
                     SLEESKAASEKVKETGVICQVGFMRRFDPAYADAKRRIDAGEIGKPIYYKGFTRDQGA
                     PPAEFIKHSGGIFIDCSIHDYDIARYLLGAEITSVSGHGRILNNPFMEQYGDVDQALT
                     YIEFDSGAAGDVEASRTSPYGHDIRAEVIGTEGSIFIGTLRHQHVTILSAKGSSFDII
                     PDFQTRFHEAYCLELQHFAECVRNGKTPIVTDIDATINLEVGIAATNSFRNGMPVQLD
                     VKRAYTGM*"
                     /label="iolX CDS"
     gene            1088595..1089623
                     /gene="iolX"
                     /locus_tag="BSU_10850"
                     /old_locus_tag="BSU10850"
                     /label="iolX gene"
     downshifts      1089645
                     /Source="Nicolas_upshifts"
                     /id="D589"
                     /incds=0
                     /nref=4
                     /ntot=37
                     /MaxReadThrough="0.33001"
                     /MaxDrop="3.45406"
                     /score="8.69111487"
                     /energy="-13.4"
                     /TU="NA"
                     /idTUdmin="U875"
                     /TUdmin=0
                     /isTUend="TRUE"
                     /label="downshifts"
     CDS             complement(1089674..1090183)
                     /gene="yisT"
                     /locus_tag="BSU_10860"
                     /old_locus_tag="BSU10860"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 25651892; Product type
                     r: regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="putative enzyme regulator of activity"
                     /protein_id="NP_388966.2"
                     /db_xref="EnsemblGenomes-Gn:BSU10860"
                     /db_xref="EnsemblGenomes-Tr:CAB12925"
                     /db_xref="GOA:O07939"
                     /db_xref="InterPro:IPR007837"
                     /db_xref="InterPro:IPR034660"
                     /db_xref="SubtiList:BG12243"
                     /db_xref="UniProtKB/Swiss-Prot:O07939"
                     /translation="MTDAKQFYDYHSWANKKIFTHIENLPEETAYQEVKSVFPSVSDV
                     LLHMCRADYIWLNVLSGVAYQEIIDSAGKLQSAQGNMAAIKQHAAELESQYHDFFSRQ
                     TDLEQTFTMQHPKLGTLESTYADTILHVVNHGTYHRGNVTAMLRQLDHSGVPTDYMYY
                     LYEKRESKG*"
                     /label="yisT CDS"
     gene            complement(1089674..1090183)
                     /gene="yisT"
                     /locus_tag="BSU_10860"
                     /old_locus_tag="BSU10860"
                     /label="yisT gene"
     downshifts      complement(1089693)
                     /Source="Nicolas_upshifts"
                     /id="D590"
                     /incds=0
                     /nref=81
                     /ntot=251
                     /MaxReadThrough="-0.0416600000000003"
                     /MaxDrop="7.15629"
                     /score="27.2292301"
                     /energy="-13.4"
                     /TU="NA"
                     /idTUdmin="U876"
                     /TUdmin="-16"
                     /isTUend="TRUE"
                     /label="downshifts"
     promotor_-10    complement(1090196..1090214)
                     /Source="Nicolas_upshift_promotors"
                     /id="U876"
                     /multdbtbs="-"
                     /comp="M1"
                     /sig="SigH"
                     /pcomp=1
                     /psig=1
                     /xcortree=520
                     /SigmaFactorBS="agcggcaggatattttggggtgtcactcttttgcaattGAAG
                     GAGAAacagatgaaaaAAACGAATTTCTTAGAAAAgggggcatgctgatgactgatgc
                     a"
                     /listShort="yisT"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(1090212)
                     /Source="Nicolas_upshifts"
                     /id="U876"
                     /multdbtbs="-"
                     /comp="M1"
                     /sig="SigH"
                     /pcomp=1
                     /psig=1
                     /xcortree=520
                     /SigmaFactorBS="agcggcaggatattttggggtgtcactcttttgcaattGAAG
                     GAGAAacagatgaaaaAAACGAATTTCTTAGAAAAgggggcatgctgatgactgatgc
                     a"
                     /listShort="yisT"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(1090226..1090234)
                     /Source="Nicolas_upshift_promotors"
                     /id="U876"
                     /multdbtbs="-"
                     /comp="M1"
                     /sig="SigH"
                     /pcomp=1
                     /psig=1
                     /xcortree=520
                     /SigmaFactorBS="agcggcaggatattttggggtgtcactcttttgcaattGAAG
                     GAGAAacagatgaaaaAAACGAATTTCTTAGAAAAgggggcatgctgatgactgatgc
                     a"
                     /listShort="yisT"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             complement(1090233..1090895)
                     /gene="yisU"
                     /locus_tag="BSU_10870"
                     /old_locus_tag="BSU10870"
                     /function="16.1: Circulate"
                     /function="16.8: Protect"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 15849754, 16850406;
                     Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="putative aminoacid related metabolite efflux
                     transporter"
                     /protein_id="NP_388967.1"
                     /db_xref="EnsemblGenomes-Gn:BSU10870"
                     /db_xref="EnsemblGenomes-Tr:CAB12926"
                     /db_xref="GOA:O06730"
                     /db_xref="InterPro:IPR001123"
                     /db_xref="SubtiList:BG13100"
                     /db_xref="UniProtKB/Swiss-Prot:O06730"
                     /translation="MTISLMIEKKCERSFFSMNAIIHGIVLAFGLILPLGVQNVFIFQ
                     QGALQKHIWRALPAVISASVCDTLLIVLAVAGVSVIVQELPVFETVMMAGGFLFLLYM
                     GWVTWNIRPNTSQNEKHTFTPKKQAAFAAAVSLLNPHAILDTIGVIGTSSLQYSGLEK
                     WLFMAACIAVSWIWFISLAIAGRLFQTIDTSGRLMLIVNKCSAAVMWAAAGYFGVSLF
                     CN*"
                     /label="yisU CDS"
     gene            complement(1090233..1090895)
                     /gene="yisU"
                     /locus_tag="BSU_10870"
                     /old_locus_tag="BSU10870"
                     /label="yisU gene"
     promotor_-35    1090914..1090920
                     /Source="Nicolas_upshift_promotors"
                     /id="U877"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.5004995004995"
                     /psig=1
                     /xcortree=3135
                     /SigmaFactorBS="gagagattgtcactaaagtctccagccatttGGTTGGGttag
                     gaaccagccAAATGTATAATGTGTAAAAAaggggggcatgaccttgtcgcaatggcag
                     c"
                     /listShort="yisV"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    1090934..1090953
                     /Source="Nicolas_upshift_promotors"
                     /id="U877"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.5004995004995"
                     /psig=1
                     /xcortree=3135
                     /SigmaFactorBS="gagagattgtcactaaagtctccagccatttGGTTGGGttag
                     gaaccagccAAATGTATAATGTGTAAAAAaggggggcatgaccttgtcgcaatggcag
                     c"
                     /listShort="yisV"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        1090943
                     /Source="Nicolas_upshifts"
                     /id="U877"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.5004995004995"
                     /psig=1
                     /xcortree=3135
                     /SigmaFactorBS="gagagattgtcactaaagtctccagccatttGGTTGGGttag
                     gaaccagccAAATGTATAATGTGTAAAAAaggggggcatgaccttgtcgcaatggcag
                     c"
                     /listShort="yisV"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             1090962..1092416
                     /gene="yisV"
                     /locus_tag="BSU_10880"
                     /old_locus_tag="BSU10880"
                     /function="16.3: Control"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 15223311, 19383706;
                     Product type r: regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="putative PLP-dependent transcriptional
                     regulator"
                     /protein_id="NP_388968.2"
                     /db_xref="EnsemblGenomes-Gn:BSU10880"
                     /db_xref="EnsemblGenomes-Tr:CAB12927"
                     /db_xref="GOA:Q796Q6"
                     /db_xref="InterPro:IPR000524"
                     /db_xref="InterPro:IPR004839"
                     /db_xref="InterPro:IPR015421"
                     /db_xref="InterPro:IPR015422"
                     /db_xref="InterPro:IPR015424"
                     /db_xref="InterPro:IPR036388"
                     /db_xref="InterPro:IPR036390"
                     /db_xref="SubtiList:BG13101"
                     /db_xref="UniProtKB/Swiss-Prot:Q796Q6"
                     /translation="MTLSQWQPSRKSDVPLHRQIEQYMKDKILHGEWAVGTKIPSQRT
                     LADMFQVNRSTVTAAIDELTSQGLLEGRKGGGTKVVNSTWSVLTAEPPLDWSDYVRSG
                     IHRANSSIIQAINQNEPRADIIRLGTGELSPDLVPADTIGRMFQQINPGVLSLGYEQP
                     KGNRQLREAVADHLKGKKIHVSPSAILIVSGALQALQLISIGLLKRDSVILTEKPSYL
                     QSLHVFQSAGMRLRGLPMDDEGVKAGLVSSNRKQYGGQLLYTIPSFHNPTGTVMSEQR
                     RKEIISLSKKEQMPIIEDDAYGDLWFEEKPPQPLKAMDHEGNILYLGAFSKTVSPGLR
                     IGWLAGPEPVIERLADIKMQTDYGSSGLSQWAAAEWLSQGYYEEHLTWVRRKLKERRD
                     AAVHFLERYAGDIATWRIPAGGFYIWVTFHKNLPVSRFFYELLKRQVLVNPGYIYDGE
                     DRNSIRLSYSYASLGDLETGIKAAAETARRLMMS*"
                     /label="yisV CDS"
     gene            1090962..1092416
                     /gene="yisV"
                     /locus_tag="BSU_10880"
                     /old_locus_tag="BSU10880"
                     /label="yisV gene"
     S_feature       complement(1092271..1092423)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1168046_1168198_c"
                     /HighExp="Diami, Sw, C90, LBGstat, dia15, Paraq, dia5, BC,
                     M40t45, Oxctl"
                     /AntisenseName="yisV"
                     /AntisenseCor="0.69858995161852"
                     /AntisenseRegPval="-40"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.995"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S391"
     downshifts      complement(1092306)
                     /Source="Nicolas_upshifts"
                     /id="D591"
                     /incds=1
                     /nref=2
                     /ntot=84
                     /MaxReadThrough="2.36735"
                     /MaxDrop="2.81041"
                     /score="-5.131548"
                     /energy="-17.3"
                     /TU="NA"
                     /idTUdmin="U879"
                     /TUdmin="-11"
                     /isTUend="TRUE"
                     /label="downshifts"
     CDS             complement(1092424..1093062)
                     /gene="yisX"
                     /locus_tag="BSU_10890"
                     /old_locus_tag="BSU10890"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved hypothetical protein"
                     /protein_id="NP_388970.1"
                     /db_xref="EnsemblGenomes-Gn:BSU10890"
                     /db_xref="EnsemblGenomes-Tr:CAB12929"
                     /db_xref="InterPro:IPR001646"
                     /db_xref="SubtiList:BG13103"
                     /db_xref="UniProtKB/Swiss-Prot:O06733"
                     /translation="MNKIAIQKPNIPENLQTADFHDAVTQDDVISMHLFEDCTICGED
                     IERLCVEKTVFRNVVFIDVSFRHIELTDVIFEKCDLSNADFSGAVIHRTSVKQSKMVG
                     MNVAEATLRNVSFEECHGHFSSFSYSNMKQVRFDHCALMQSECSDTVLQQTHFDGCEL
                     EGASFTGTSLQNMDISTCRFEQLHVSLDKLKGCKIAPEHAIAFARALGAVIV*"
                     /label="yisX CDS"
     gene            complement(1092424..1093062)
                     /gene="yisX"
                     /locus_tag="BSU_10890"
                     /old_locus_tag="BSU10890"
                     /label="yisX gene"
     S_feature       complement(1093063..1093197)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1168838_1168972_c"
                     /HighExp="Diami, dia15, dia5, C90, BC, Paraq, LBGstat,
                     Lbtran, HiOs, Sw"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.995"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S392"
     promotor_-35    1093111..1093116
                     /Source="Nicolas_upshift_promotors"
                     /id="U878"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.994005994005994"
                     /psig="0.994005994005994"
                     /xcortree=1110
                     /SigmaFactorBS="cctttgctgcccgaaaaacagaggcttccgggttcaatTTAA
                     TAgatcgttaaggaaatTGATACATATAGTAAATCGtgaagagccttttcttggtaca
                     g"
                     /listShort="S393, yisY"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    1093132..1093150
                     /Source="Nicolas_upshift_promotors"
                     /id="U878"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.994005994005994"
                     /psig="0.994005994005994"
                     /xcortree=1110
                     /SigmaFactorBS="cctttgctgcccgaaaaacagaggcttccgggttcaatTTAA
                     TAgatcgttaaggaaatTGATACATATAGTAAATCGtgaagagccttttcttggtaca
                     g"
                     /listShort="S393, yisY"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        1093133
                     /Source="Nicolas_upshifts"
                     /id="U878"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.994005994005994"
                     /psig="0.994005994005994"
                     /xcortree=1110
                     /SigmaFactorBS="cctttgctgcccgaaaaacagaggcttccgggttcaatTTAA
                     TAgatcgttaaggaaatTGATACATATAGTAAATCGtgaagagccttttcttggtaca
                     g"
                     /listShort="S393, yisY"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     S_feature       1093143..1093267
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1168918_1169042"
                     /HighExp="S6, S5, S8, S7, S4, BT, B36, S3, G/S, LoTm"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigEF"
                     /TUshortPSig="0.994"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S393"
     promotor_-10    complement(1093183..1093202)
                     /Source="Nicolas_upshift_promotors"
                     /id="U879"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.974025974025974"
                     /psig="0.995004995004995"
                     /xcortree=2078
                     /SigmaFactorBS="tcctgttccctttggctttttcggcctgtaaacGCCTTGACg
                     tataggaagctttCCATTTATGCTTACAAAACAagcgggctgctgtaccaagaaaagg
                     c"
                     /listShort="S392, yisX, S391"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(1093197)
                     /Source="Nicolas_upshifts"
                     /id="U879"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.974025974025974"
                     /psig="0.995004995004995"
                     /xcortree=2078
                     /SigmaFactorBS="tcctgttccctttggctttttcggcctgtaaacGCCTTGACg
                     tataggaagctttCCATTTATGCTTACAAAACAagcgggctgctgtaccaagaaaagg
                     c"
                     /listShort="S392, yisX, S391"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(1093217..1093224)
                     /Source="Nicolas_upshift_promotors"
                     /id="U879"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.974025974025974"
                     /psig="0.995004995004995"
                     /xcortree=2078
                     /SigmaFactorBS="tcctgttccctttggctttttcggcctgtaaacGCCTTGACg
                     tataggaagctttCCATTTATGCTTACAAAACAagcgggctgctgtaccaagaaaagg
                     c"
                     /listShort="S392, yisX, S391"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             1093268..1094074
                     /gene="yisY"
                     /locus_tag="BSU_10900"
                     /old_locus_tag="BSU10900"
                     /EC_number="3.1.-.-"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 22882546, 22720735;
                     Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative acyl hydrolase or peroxidase"
                     /protein_id="NP_388971.1"
                     /db_xref="EnsemblGenomes-Gn:BSU10900"
                     /db_xref="EnsemblGenomes-Tr:CAB12930"
                     /db_xref="GOA:O06734"
                     /db_xref="InterPro:IPR000073"
                     /db_xref="InterPro:IPR000639"
                     /db_xref="InterPro:IPR029058"
                     /db_xref="SubtiList:BG13104"
                     /db_xref="UniProtKB/Swiss-Prot:O06734"
                     /translation="MGHYIKTEEHVTLFVEDIGHGRPIIFLHGWPLNHKMFEYQMNEL
                     PKRGFRFIGVDLRGYGQSDRPWEGYDYDTMADDVKAVIYTLQLENAILAGFSMGGAIA
                     IRYMARHEGADVDKLILLSAAAPAFTKRPGYPYGMRKQDIDDMIELFKADRPKTLADL
                     GKQFFEKKVSPELRQWFLNLMLEASSYGTIHSGIALRDEDLRKELAAIKVPTLILHGR
                     KDRIAPFDFAKELKRGIKQSELVPFANSGHGAFYEEKEKINSLIAQFSNS*"
                     /label="yisY CDS"
     gene            1093268..1094074
                     /gene="yisY"
                     /locus_tag="BSU_10900"
                     /old_locus_tag="BSU10900"
                     /label="yisY gene"
     downshifts      1094067
                     /Source="Nicolas_upshifts"
                     /id="D592"
                     /incds=0
                     /nref=4
                     /ntot=24
                     /MaxReadThrough="2.64682"
                     /MaxDrop="5.60718"
                     /score="8.70914085"
                     /energy="-6.5"
                     /TU="NA"
                     /idTUdmin="U878"
                     /TUdmin=0
                     /isTUend="TRUE"
                     /label="downshifts"
     CDS             complement(1094102..1094701)
                     /gene="yisZ"
                     /locus_tag="BSU_10910"
                     /old_locus_tag="BSU10910"
                     /EC_number="2.7.1.25"
                     /function="16.5: Explore"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 15383836; Product type
                     e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative adenylylsulfate kinase"
                     /protein_id="NP_388972.1"
                     /db_xref="EnsemblGenomes-Gn:BSU10910"
                     /db_xref="EnsemblGenomes-Tr:CAB12931"
                     /db_xref="GOA:O06735"
                     /db_xref="InterPro:IPR002891"
                     /db_xref="InterPro:IPR027417"
                     /db_xref="SubtiList:BG13105"
                     /db_xref="UniProtKB/Swiss-Prot:O06735"
                     /translation="MTHNPNIIWHPAAISKSDRQSLNGHKSCVLWFTGLSGSGKSVLA
                     NAVDEKLYRKGIQSYVLDGDNIRHGLNKDLGFQTGDRIENIRRIGEVAKLFVDSGQMI
                     LTAFISPFREDRDMVRALFPKGEFFEIYVKCPLHVCEQRDPKGLYKKARNGEIKHFTG
                     IDSPYEAPLSPDFIIESDQTSISDGADLIINALQNRGII*"
                     /label="yisZ CDS"
     gene            complement(1094102..1094701)
                     /gene="yisZ"
                     /locus_tag="BSU_10910"
                     /old_locus_tag="BSU10910"
                     /label="yisZ gene"
     downshifts      complement(1094121)
                     /Source="Nicolas_upshifts"
                     /id="D593"
                     /incds=0
                     /nref=35
                     /ntot=44
                     /MaxReadThrough="1.69999"
                     /MaxDrop="6.8011"
                     /score="17.1506785"
                     /energy="-7.3"
                     /TU="NA"
                     /idTUdmin="U880"
                     /TUdmin=0
                     /isTUend="TRUE"
                     /label="downshifts"
     CDS             complement(1094698..1095867)
                     /gene="yitA"
                     /locus_tag="BSU_10920"
                     /old_locus_tag="BSU10920"
                     /EC_number="2.7.7.4"
                     /function="16.5: Explore"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 15383836; Product type
                     e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative sulfate adenylyltransferase"
                     /protein_id="NP_388973.2"
                     /db_xref="EnsemblGenomes-Gn:BSU10920"
                     /db_xref="EnsemblGenomes-Tr:CAB12932"
                     /db_xref="GOA:O06736"
                     /db_xref="InterPro:IPR002650"
                     /db_xref="InterPro:IPR014729"
                     /db_xref="InterPro:IPR015947"
                     /db_xref="InterPro:IPR020792"
                     /db_xref="InterPro:IPR024951"
                     /db_xref="InterPro:IPR025980"
                     /db_xref="SubtiList:BG13106"
                     /db_xref="UniProtKB/Swiss-Prot:O06736"
                     /translation="MNGNEPHGGVLINRCDPACHFEGCACQAELDQLALSDLELIAIG
                     GYSPLTGFLGEKDYHSVVKEMRLANGLPWSLPITLPVGEKTARQLSAGDHVKLVKDGV
                     TYGMITVTDIYQPDKTQEALSVFKTNDPAHPGVKKLLARPDYYIGGPITVSSLPDKSF
                     EQFYATPAETRAAFQKLGWKTIVGFQTRNPVHRAHEYIQKTALETVDGLLLHPLVGET
                     KSDDIPSDIRMESYQALLNHYYPKDRVMLSVFPAAMRYAGPREAIFHALVRKNYGCTH
                     FIVGRDHAGVGSYYGTYDAQNIFQSFTEEELGIKPLFFEHSFYCRKCGNMGTSKTCPH
                     SPRDHIHLSGTKVRELLRQGKKPPKEFSRPEVAAVLIKGLHQQPVAIKQNSGELQ*"
                     /label="yitA CDS"
     gene            complement(1094698..1095867)
                     /gene="yitA"
                     /locus_tag="BSU_10920"
                     /old_locus_tag="BSU10920"
                     /label="yitA gene"
     S_feature       complement(1095868..1095979)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1171643_1171754_c"
                     /HighExp="S6, S7, S8, BT, S5, B36, G/S, Pyr, SMMPr, B60"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigK"
                     /TUshortPSig=1
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S394"
     CDS             complement(1095980..1096690)
                     /gene="yitB"
                     /locus_tag="BSU_10930"
                     /old_locus_tag="BSU10930"
                     /EC_number="1.8.4.8"
                     /function="16.2: Construct biomass (Anabolism)"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 15383836; Product type
                     e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative phospho-adenylylsulfate reductase"
                     /protein_id="NP_388974.2"
                     /db_xref="EnsemblGenomes-Gn:BSU10930"
                     /db_xref="EnsemblGenomes-Tr:CAB12933"
                     /db_xref="GOA:O06737"
                     /db_xref="InterPro:IPR002500"
                     /db_xref="InterPro:IPR004511"
                     /db_xref="InterPro:IPR011798"
                     /db_xref="InterPro:IPR014729"
                     /db_xref="SubtiList:BG13107"
                     /db_xref="UniProtKB/Swiss-Prot:O06737"
                     /translation="MNETITYDTWNDMLSKQITDQLIDELDVLKWAYRTYGEKIVYAC
                     SFGAEGMVLLDLISKINKNAHIIFLDTGLHFQETYELIETVKERYPGFAIQMLEPELS
                     LTEQGTKYGGELWKHNPNLCCQLRKIEPLKKHLSGMTAWISGLRRDQSPTRKHIQYVN
                     LDQKFELIKICPLIHWTWDDVWTYIRLHNLPYNKLHDQHYPSIGCEMCTLPSPDPNDE
                     RAGRWAGREKTECGLHQE*"
                     /label="yitB CDS"
     gene            complement(1095980..1096690)
                     /gene="yitB"
                     /locus_tag="BSU_10930"
                     /old_locus_tag="BSU10930"
                     /label="yitB gene"
     promotor_-10    complement(1096734..1096753)
                     /Source="Nicolas_upshift_promotors"
                     /id="U880"
                     /multdbtbs="SigK"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp=1
                     /psig=1
                     /xcortree=1285
                     /SigmaFactorBS="aatggttccgcacctcattttaggcgggcgcggcacctaaaA
                     CCTGAACCTttatgcaaaaaaTGAATAGTCTGCCTATAACTcgatcaatagataaaaa
                     a"
                     /listShort="yitB, S394, yitA, yisZ"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(1096756)
                     /Source="Nicolas_upshifts"
                     /id="U880"
                     /multdbtbs="SigK"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp=1
                     /psig=1
                     /xcortree=1285
                     /SigmaFactorBS="aatggttccgcacctcattttaggcgggcgcggcacctaaaA
                     CCTGAACCTttatgcaaaaaaTGAATAGTCTGCCTATAACTcgatcaatagataaaaa
                     a"
                     /listShort="yitB, S394, yitA, yisZ"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(1096766..1096775)
                     /Source="Nicolas_upshift_promotors"
                     /id="U880"
                     /multdbtbs="SigK"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp=1
                     /psig=1
                     /xcortree=1285
                     /SigmaFactorBS="aatggttccgcacctcattttaggcgggcgcggcacctaaaA
                     CCTGAACCTttatgcaaaaaaTGAATAGTCTGCCTATAACTcgatcaatagataaaaa
                     a"
                     /listShort="yitB, S394, yitA, yisZ"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-35    1096805..1096814
                     /Source="Nicolas_upshift_promotors"
                     /id="U881"
                     /multdbtbs="SigE,SigK"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp="0.999000999001"
                     /psig="0.999000999001"
                     /xcortree=1286
                     /SigmaFactorBS="aggtgccgcgcccgcctaaaatgaggTGCGGAACCAttaaga
                     gcccggcTGAATATGCTTTTTAGCAAAatggttttatgcccaaggagaggtagtatgc
                     c"
                     /listShort="yitC, yitD"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    1096828..1096847
                     /Source="Nicolas_upshift_promotors"
                     /id="U881"
                     /multdbtbs="SigE,SigK"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp="0.999000999001"
                     /psig="0.999000999001"
                     /xcortree=1286
                     /SigmaFactorBS="aggtgccgcgcccgcctaaaatgaggTGCGGAACCAttaaga
                     gcccggcTGAATATGCTTTTTAGCAAAatggttttatgcccaaggagaggtagtatgc
                     c"
                     /listShort="yitC, yitD"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        1096839
                     /Source="Nicolas_upshifts"
                     /id="U881"
                     /multdbtbs="SigE,SigK"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp="0.999000999001"
                     /psig="0.999000999001"
                     /xcortree=1286
                     /SigmaFactorBS="aggtgccgcgcccgcctaaaatgaggTGCGGAACCAttaaga
                     gcccggcTGAATATGCTTTTTAGCAAAatggttttatgcccaaggagaggtagtatgc
                     c"
                     /listShort="yitC, yitD"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             1096875..1097561
                     /gene="slpH"
                     /locus_tag="BSU_10940"
                     /old_locus_tag="BSU10940"
                     /EC_number="3.1.3.71"
                     /function="15.7: Sporulation and germination"
                     /function="16.2: Construct biomass (Anabolism)"
                     /function="16.8: Protect"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 2b: Function from indirect experimental
                     evidences (e.g. phenotypes); PubMedId: 3346220, 11830598,
                     15383836, 16341843; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="2-phospho,3-sulfolactate phosphatase
                     (sporulation related)"
                     /protein_id="NP_388975.1"
                     /db_xref="EnsemblGenomes-Gn:BSU10940"
                     /db_xref="EnsemblGenomes-Tr:CAB12934"
                     /db_xref="GOA:O06738"
                     /db_xref="InterPro:IPR005238"
                     /db_xref="InterPro:IPR036702"
                     /db_xref="SubtiList:BG13108"
                     /db_xref="UniProtKB/Swiss-Prot:O06738"
                     /translation="MPIAIYQGHHHSLAPADINIVIDVIRAFTVAHYAFIGGAKEILL
                     VRTADEAFALKDTYPDYVLTGEEKGVGISGFDLDNSPKRMAGQNMTDKSLIQKTTNGV
                     TAALGALNAKHLFVTGFSNAKTTAQHVKKLVANDCVINIVASHPSGDDDMACAEYIKG
                     IIEGTNVVTAAEAIERIKGSSVAEKFFDCRQPLFDSEDIVYCTKELTGDFVMKVKQDG
                     EVPTIERVII*"
                     /label="slpH CDS"
     gene            1096875..1097561
                     /gene="slpH"
                     /locus_tag="BSU_10940"
                     /old_locus_tag="BSU10940"
                     /label="slpH gene"
     CDS             1097558..1098316
                     /gene="slpS"
                     /locus_tag="BSU_10950"
                     /old_locus_tag="BSU10950"
                     /EC_number="4.4.1.19"
                     /function="16.14: Store"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 2b: Function from indirect experimental
                     evidences (e.g. phenotypes); PubMedId: 11830598, 15014443,
                     15383836; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="2-phospho-3-sulfolactate synthase"
                     /protein_id="NP_388976.1"
                     /db_xref="EnsemblGenomes-Gn:BSU10950"
                     /db_xref="EnsemblGenomes-Tr:CAB12935"
                     /db_xref="GOA:O06739"
                     /db_xref="InterPro:IPR003830"
                     /db_xref="InterPro:IPR013785"
                     /db_xref="InterPro:IPR036112"
                     /db_xref="PDB:1U83"
                     /db_xref="SubtiList:BG13109"
                     /db_xref="UniProtKB/Swiss-Prot:O06739"
                     /translation="MNDFSLELPVRTNKPRETGQSILIDNGYPLQFFKDAIAGASDYI
                     DFVKFGWGTSLLTKDLEEKISTLKEHDITFFFGGTLFEKYVSQKKVNEFHRYCTYFGC
                     EYIEISNGTLPMTNKEKAAYIADFSDEFLVLSEVGSKDAELASRQSSEEWLEYIVEDM
                     EAGAEKVITEARESGTGGICSSSGDVRFQIVDDIISSDIDINRLIFEAPNKTLQQGFI
                     QKIGPNVNLANIPFHDAIALETLRLGLRSDTFFL*"
                     /label="slpS CDS"
     gene            1097558..1098316
                     /gene="slpS"
                     /locus_tag="BSU_10950"
                     /old_locus_tag="BSU10950"
                     /label="slpS gene"
     downshifts      1098313
                     /Source="Nicolas_upshifts"
                     /id="D594"
                     /incds=0
                     /nref=2
                     /ntot=20
                     /MaxReadThrough="2.37654"
                     /MaxDrop="4.17689"
                     /score="-1.32868938"
                     /energy="-17.6"
                     /TU="NA"
                     /idTUdmin="U881"
                     /TUdmin=0
                     /isTUend="TRUE"
                     /label="downshifts"
     CDS             complement(1098361..1098990)
                     /gene="yitE"
                     /locus_tag="BSU_10960"
                     /old_locus_tag="BSU10960"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 15849754, 16850406,
                     26335199; Product type m: membrane component"
                     /codon_start=1
                     /transl_table=11
                     /product="putative integral inner membrane protein"
                     /protein_id="NP_388977.1"
                     /db_xref="EnsemblGenomes-Gn:BSU10960"
                     /db_xref="EnsemblGenomes-Tr:CAB12936"
                     /db_xref="GOA:O06740"
                     /db_xref="InterPro:IPR003740"
                     /db_xref="SubtiList:BG13110"
                     /db_xref="UniProtKB/Swiss-Prot:O06740"
                     /translation="MAELLMKAKLTFMIVVGGVLQGLGMSLFLFPHDIPTGGAAGIAV
                     LLHYLFQIPHGFSVWAVNVSMLFTALKWLEMRTFTGTLASITVTSVSVLIFDAVFPDI
                     TSNLWLDLASGAVLLGLGIGLLYKYKISNGGFGALALMISIYRGGNPGTILLIMNCII
                     FMVTASIIDWGIVIQALICQVISTRVIDFIYNIRLTSLPYLTPMYRHKK*"
                     /label="yitE CDS"
     gene            complement(1098361..1098990)
                     /gene="yitE"
                     /locus_tag="BSU_10960"
                     /old_locus_tag="BSU10960"
                     /label="yitE gene"
     promotor_-10    complement(1099024..1099042)
                     /Source="Nicolas_upshift_promotors"
                     /id="U882"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp=1
                     /psig=1
                     /xcortree=996
                     /SigmaFactorBS="tggctcagcctattaagctgggccatttctttattttgaGAC
                     ATAaataatggacagccTCATAAAATGAAAACAGCGgacaagtcttttcataaaggag
                     c"
                     /listShort="yitE"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(1099041)
                     /Source="Nicolas_upshifts"
                     /id="U882"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp=1
                     /psig=1
                     /xcortree=996
                     /SigmaFactorBS="tggctcagcctattaagctgggccatttctttattttgaGAC
                     ATAaataatggacagccTCATAAAATGAAAACAGCGgacaagtcttttcataaaggag
                     c"
                     /listShort="yitE"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(1099057..1099062)
                     /Source="Nicolas_upshift_promotors"
                     /id="U882"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp=1
                     /psig=1
                     /xcortree=996
                     /SigmaFactorBS="tggctcagcctattaagctgggccatttctttattttgaGAC
                     ATAaataatggacagccTCATAAAATGAAAACAGCGgacaagtcttttcataaaggag
                     c"
                     /listShort="yitE"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             complement(1099086..1100201)
                     /gene="yitF"
                     /locus_tag="BSU_10970"
                     /old_locus_tag="BSU10970"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 10960106, 11747447,
                     27994575; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative enolase superfamily enzyme (isomerase
                     /dehydratase)"
                     /protein_id="NP_388978.1"
                     /db_xref="EnsemblGenomes-Gn:BSU10970"
                     /db_xref="EnsemblGenomes-Tr:CAB12937"
                     /db_xref="GOA:O06741"
                     /db_xref="InterPro:IPR013341"
                     /db_xref="InterPro:IPR013342"
                     /db_xref="InterPro:IPR029017"
                     /db_xref="InterPro:IPR029065"
                     /db_xref="InterPro:IPR036849"
                     /db_xref="PDB:2GDQ"
                     /db_xref="PDB:2GGE"
                     /db_xref="SubtiList:BG13111"
                     /db_xref="UniProtKB/Swiss-Prot:O06741"
                     /translation="MKIVRIETFPLFHRLEKPYGDANGFKRYRTCYLIRIITESGIDG
                     WGECVDWLPALHVGFTKRIIPFLLGKQAGSRLSLVRTIQKWHQRAASAVSMALTEIAA
                     KAADCSVCELWGGRYREEIPVYASFQSYSDSPQWISRSVSNVEAQLKKGFEQIKVKIG
                     GTSFKEDVRHINALQHTAGSSITMILDANQSYDAAAAFKWERYFSEWTNIGWLEEPLP
                     FDQPQDYAMLRSRLSVPVAGGENMKGPAQYVPLLSQRCLDIIQPDVMHVNGIDEFRDC
                     LQLARYFGVRASAHAYDGSLSRLYALFAQACLPPWSKMKNDHIEPIEWDVMENPFTDL
                     VSLQPSKGMVHIPKGKGIGTEINMEIVNRYKWDGSAY*"
                     /label="yitF CDS"
     gene            complement(1099086..1100201)
                     /gene="yitF"
                     /locus_tag="BSU_10970"
                     /old_locus_tag="BSU10970"
                     /label="yitF gene"
     downshifts      complement(1099115)
                     /Source="Nicolas_upshifts"
                     /id="D595"
                     /incds=0
                     /nref=11
                     /ntot=42
                     /MaxReadThrough="1.81817"
                     /MaxDrop="4.27426"
                     /score="13.5713023"
                     /energy="-14.5"
                     /TU="NA"
                     /idTUdmin="U883"
                     /TUdmin=0
                     /isTUend="TRUE"
                     /label="downshifts"
     CDS             complement(1100210..1101478)
                     /gene="yitG"
                     /locus_tag="BSU_10980"
                     /old_locus_tag="BSU10980"
                     /function="16.8: Protect"
                     /function="16.1: Circulate"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 10960106, 14762009,
                     15109717, 15849754, 16850406; Product type t :
                     transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="putative efflux transporter"
                     /protein_id="NP_388979.1"
                     /db_xref="EnsemblGenomes-Gn:BSU10980"
                     /db_xref="EnsemblGenomes-Tr:CAB12938"
                     /db_xref="GOA:Q796Q1"
                     /db_xref="InterPro:IPR001958"
                     /db_xref="InterPro:IPR011701"
                     /db_xref="InterPro:IPR020846"
                     /db_xref="InterPro:IPR036259"
                     /db_xref="SubtiList:BG13112"
                     /db_xref="UniProtKB/Swiss-Prot:Q796Q1"
                     /translation="MESSKQNNGMTIVAIGSIPLILTLGNSMLIPILPKMKSELHLSQ
                     FQVSLVITVFSLIAAFAIPIVGYLADRFSRKVIIIPCLILYGAGGLLAGFAAGFFDNA
                     YPWVMAGRALQGIGAAGTGPIAMALTGDLFKGAQESKVLGLVEASNGMGKVLSPIIGS
                     LIALLVWYGAFFAFPVFCIISIVLTWIFIKEKKKEKEPPPIGQYAKGLLSVFKHEGRW
                     LFTAYLAGATCLFTLFGILFYLSDVLEKTYDTDGVKKGLILAIPLLVMCVTSYTTGSK
                     IGQKQSLMKKLIVLGLAFMTVSYAALSFIENLVLFISVLVLSSIGSGLVLPCVNSFIT
                     GAVGKERRGFVTSLYGSVRFLGVAIGPPIFGRLMQWSRPGMFLSIAGLTLVVGILVMM
                     LIHVKQNNEETKEKEDPKMAGNRLQPAEER*"
                     /label="yitG CDS"
     gene            complement(1100210..1101478)
                     /gene="yitG"
                     /locus_tag="BSU_10980"
                     /old_locus_tag="BSU10980"
                     /label="yitG gene"
     promotor_-10    complement(1101504..1101515)
                     /Source="Nicolas_upshift_promotors"
                     /id="U883"
                     /multdbtbs="SigG"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp=1
                     /psig=1
                     /xcortree=932
                     /SigmaFactorBS="acaggtatcttctgttcggttttttgctgtctgatcgcTGAA
                     TAAacgaagccatcagGGACATTCTAAGcagaagaaaaggagtgtgctctgagatgga
                     a"
                     /listShort="yitG, yitF"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(1101513)
                     /Source="Nicolas_upshifts"
                     /id="U883"
                     /multdbtbs="SigG"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp=1
                     /psig=1
                     /xcortree=932
                     /SigmaFactorBS="acaggtatcttctgttcggttttttgctgtctgatcgcTGAA
                     TAAacgaagccatcagGGACATTCTAAGcagaagaaaaggagtgtgctctgagatgga
                     a"
                     /listShort="yitG, yitF"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(1101529..1101535)
                     /Source="Nicolas_upshift_promotors"
                     /id="U883"
                     /multdbtbs="SigG"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp=1
                     /psig=1
                     /xcortree=932
                     /SigmaFactorBS="acaggtatcttctgttcggttttttgctgtctgatcgcTGAA
                     TAAacgaagccatcagGGACATTCTAAGcagaagaaaaggagtgtgctctgagatgga
                     a"
                     /listShort="yitG, yitF"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             complement(1101590..1102438)
                     /gene="yitH"
                     /locus_tag="BSU_10990"
                     /old_locus_tag="BSU10990"
                     /EC_number="2.3.1.-"
                     /function="16.8: Protect"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 23944997; Product type
                     e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative N-acetyltransferase"
                     /protein_id="NP_388980.1"
                     /db_xref="EnsemblGenomes-Gn:BSU10990"
                     /db_xref="EnsemblGenomes-Tr:CAB12939"
                     /db_xref="GOA:O06743"
                     /db_xref="InterPro:IPR000182"
                     /db_xref="InterPro:IPR016181"
                     /db_xref="SubtiList:BG13113"
                     /db_xref="UniProtKB/Swiss-Prot:O06743"
                     /translation="MDVVDELIKLHEEHVSGLLRLCGQAGWPDYGEQELKLLVQQGRF
                     FGYQNVSGDIISCIGLFLFGRLTSIGLVIVDKEYQRLGLGRRMVNACITQTDENTAIR
                     LCATKEGLPLYEKAGFHTAGSVRKYSCHSFQPYTKKLDAELTSFREQDFHDLTAADLA
                     AFGGDRSNLLQQLISASCECIIARNQDGQLIGYGLSVQTPANLKFGPIIAPSSDVAAQ
                     IITRLAAGKQGPMRIDIPSEHTSLHDSLIEMGFHKDDEPPILFYQKKAPIQNGHLYAL
                     ISQALG*"
                     /label="yitH CDS"
     gene            complement(1101590..1102438)
                     /gene="yitH"
                     /locus_tag="BSU_10990"
                     /old_locus_tag="BSU10990"
                     /label="yitH gene"
     downshifts      complement(1101601)
                     /Source="Nicolas_upshifts"
                     /id="D596"
                     /incds=0
                     /nref=34
                     /ntot=209
                     /MaxReadThrough="2.34135"
                     /MaxDrop="3.51892"
                     /score="14.8688564"
                     /energy="-11.7"
                     /TU="NA"
                     /idTUdmin="U884"
                     /TUdmin=0
                     /isTUend="TRUE"
                     /label="downshifts"
     CDS             complement(1102443..1102892)
                     /gene="yitI"
                     /locus_tag="BSU_11000"
                     /old_locus_tag="BSU11000"
                     /EC_number="2.3.1.-"
                     /function="16.8: Protect"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 23944997; Product type
                     e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative N-acetyltransferase"
                     /protein_id="NP_388981.2"
                     /db_xref="EnsemblGenomes-Gn:BSU11000"
                     /db_xref="EnsemblGenomes-Tr:CAB12940"
                     /db_xref="GOA:O06744"
                     /db_xref="InterPro:IPR000182"
                     /db_xref="InterPro:IPR016181"
                     /db_xref="SubtiList:BG13114"
                     /db_xref="UniProtKB/Swiss-Prot:O06744"
                     /translation="MLEVKTISVEDTYEIRHRILRPHQSIEQCKYKEDHAEGSFHLGV
                     FYDGTLISIASFSPQSQPLLTEASAYRLRGMATLEGYRDQKAGSTLIKHAEHKLAESG
                     VQAVWCNARHHVKGYYAKLGWKELGEPFDIPGIGNHIVMYKTLRTSR*"
                     /label="yitI CDS"
     gene            complement(1102443..1102892)
                     /gene="yitI"
                     /locus_tag="BSU_11000"
                     /old_locus_tag="BSU11000"
                     /label="yitI gene"
     promotor_-10    complement(1102913..1102932)
                     /Source="Nicolas_upshift_promotors"
                     /id="U884"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.834165834165834"
                     /psig="0.999000999001"
                     /xcortree=2266
                     /SigmaFactorBS="cattaatttccaaaagactgcctgatcgaatcgggcagTCtt
                     tttcaacgagattCGTGTTACGATATAGAAAAAcaatcatgaggaggaacattatgct
                     c"
                     /listShort="yitI, yitH"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(1102927)
                     /Source="Nicolas_upshifts"
                     /id="U884"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.834165834165834"
                     /psig="0.999000999001"
                     /xcortree=2266
                     /SigmaFactorBS="cattaatttccaaaagactgcctgatcgaatcgggcagTCtt
                     tttcaacgagattCGTGTTACGATATAGAAAAAcaatcatgaggaggaacattatgct
                     c"
                     /listShort="yitI, yitH"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(1102948..1102949)
                     /Source="Nicolas_upshift_promotors"
                     /id="U884"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.834165834165834"
                     /psig="0.999000999001"
                     /xcortree=2266
                     /SigmaFactorBS="cattaatttccaaaagactgcctgatcgaatcgggcagTCtt
                     tttcaacgagattCGTGTTACGATATAGAAAAAcaatcatgaggaggaacattatgct
                     c"
                     /listShort="yitI, yitH"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             complement(1102982..1104820)
                     /gene="samT"
                     /locus_tag="BSU_11010"
                     /old_locus_tag="BSU11010"
                     /EC_number="1.5.1.20"
                     /EC_number="2.1.1.10"
                     /function="16.6: Maintain"
                     /function="16.11: Scavenge (Catabolism)"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 2a: Function from experimental evidences
                     in other organisms; PubMedId: 10094622, 17264075,
                     20421295, 20951706, 26233166; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional homocysteine S-methyltransferase
                     using (R,S)AdoMet and methylenetetrahydrofolate reductase
                     [NAD(P)H]"
                     /protein_id="NP_388982.1"
                     /db_xref="EnsemblGenomes-Gn:BSU11010"
                     /db_xref="EnsemblGenomes-Tr:CAB12941"
                     /db_xref="GOA:O06745"
                     /db_xref="InterPro:IPR003171"
                     /db_xref="InterPro:IPR003726"
                     /db_xref="InterPro:IPR029041"
                     /db_xref="InterPro:IPR036589"
                     /db_xref="SubtiList:BG13115"
                     /db_xref="UniProtKB/Swiss-Prot:O06745"
                     /translation="MGLLEDLQRQVLIGDGAMGTLLYSYGIDRCFEELNISKPEEIQR
                     IHKAYVEAGANIIQTNTYGANYIKLSRHGLEDDIKKMNQEAVKIARASAGDAYVLGTM
                     GGIRTFNKNAYSLDEIKRSFREQLYLLLHEEPDGLLLETYYDLEEAREVLKIARKETD
                     LPIMLNVSMHEQGVLQDGTPLSDALRSIADLGADIVGINCRLGPYHMIEALSEVPIFD
                     DVFLSVYPNSSLPSLEEGRLVYETDDTYFQNSASEFRKQGARIIGGCCGTTPNHIRAM
                     AEAVGGLAPITEKEVKTRAKEFISVHHERTEPGLDEIAAKKRSIIVELDPPKKLSFDK
                     FLSAAAELKEAGIDALTLADNSLATPRISNVACGALVKQQLDMRSLVHITCRDRNIIG
                     LQSHLMGLDTLGLNDVLAITGDPSKIGDFPGATSVYDLTSFDLIRLIKQFNEGLSLSG
                     KPLGKKTNFSVAAAFNPNVRHLDKAVKRLEKKIDCGADYFVSQPVYSEQQLVDIHNET
                     KHLKTPIYIGIMPLTSSRNAEFIHNEIPGIKLSDTIREKMAHAGEDKEKQKAEGLAIA
                     RSLLDTACELFNGIYLITPFLRSDLTAELTSYIQQKDEQRQNIFLH*"
                     /label="samT CDS"
     gene            complement(1102982..1104820)
                     /gene="samT"
                     /locus_tag="BSU_11010"
                     /old_locus_tag="BSU11010"
                     /label="samT gene"
     downshifts      complement(1103009)
                     /Source="Nicolas_upshifts"
                     /id="D597"
                     /incds=0
                     /nref=14
                     /ntot=91
                     /MaxReadThrough="3.04289"
                     /MaxDrop="4.13744"
                     /score="12.9586126"
                     /energy="-16.2"
                     /TU="U885"
                     /idTUdmin="U885"
                     /TUdmin="-66"
                     /isTUend="FALSE"
                     /label="downshifts"
     downshifts      complement(1104902)
                     /Source="Nicolas_upshifts"
                     /id="D598"
                     /incds=0
                     /nref=47
                     /ntot=128
                     /MaxReadThrough="8.00128"
                     /MaxDrop="5.61487"
                     /score="22.3754155"
                     /energy="-7.3"
                     /TU="U885,U887"
                     /idTUdmin="U887"
                     /TUdmin="-1079"
                     /isTUend="FALSE"
                     /label="downshifts"
     misc_RNA        complement(1104910..1105027)
                     /gene="mswK"
                     /locus_tag="BSU_misc_RNA_12"
                     /product="S-adenosylmethionine riboswitch"
                     /experiment="publication(s) with functional evidences,
                     PMID:10094622, 12626738, 12910260, 17381305, 18039762"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 10094622, 12626738,
                     12910260, 17381305, 18039762; Product type n: RNA"
                     /function="16.3: Control"
                     /label="mswK RNA"
     gene            complement(1104910..1105027)
                     /gene="mswK"
                     /locus_tag="BSU_misc_RNA_12"
                     /label="mswK gene"
     promotor_-10    complement(1105079..1105098)
                     /Source="Nicolas_upshift_promotors"
                     /id="U885"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.93906093906094"
                     /psig="0.999000999001"
                     /xcortree=2886
                     /SigmaFactorBS="aatttataaatttcagataaattttctgattccTATTGATTa
                     ttgtctttattttCGGTAAATTTGGAGAAAGGGaaaaacgccagatatcttttggcac
                     t"
                     /listShort="NA, yitJ"
                     /listLong="yitI, yitH"
                     /label="promotor_-10"
     upshifts        complement(1105093)
                     /Source="Nicolas_upshifts"
                     /id="U885"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.93906093906094"
                     /psig="0.999000999001"
                     /xcortree=2886
                     /SigmaFactorBS="aatttataaatttcagataaattttctgattccTATTGATTa
                     ttgtctttattttCGGTAAATTTGGAGAAAGGGaaaaacgccagatatcttttggcac
                     t"
                     /listShort="NA, yitJ"
                     /listLong="yitI, yitH"
                     /label="upshifts"
     promotor_-35    complement(1105113..1105120)
                     /Source="Nicolas_upshift_promotors"
                     /id="U885"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.93906093906094"
                     /psig="0.999000999001"
                     /xcortree=2886
                     /SigmaFactorBS="aatttataaatttcagataaattttctgattccTATTGATTa
                     ttgtctttattttCGGTAAATTTGGAGAAAGGGaaaaacgccagatatcttttggcac
                     t"
                     /listShort="NA, yitJ"
                     /listLong="yitI, yitH"
                     /label="promotor_-35"
     CDS             complement(1105134..1105625)
                     /gene="yitK"
                     /locus_tag="BSU_11020"
                     /old_locus_tag="BSU11020"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 12943362, 25329577;
                     Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative RNA or cyclic d-GMP binding protein"
                     /protein_id="NP_388983.1"
                     /db_xref="EnsemblGenomes-Gn:BSU11020"
                     /db_xref="EnsemblGenomes-Tr:CAB12942"
                     /db_xref="InterPro:IPR007551"
                     /db_xref="InterPro:IPR035570"
                     /db_xref="InterPro:IPR035571"
                     /db_xref="InterPro:IPR036183"
                     /db_xref="SubtiList:BG13116"
                     /db_xref="UniProtKB/Swiss-Prot:O06746"
                     /translation="MAKESSFDIVSKVELPEVQNAIQIALKEISTRYDFKGSKSDISL
                     DKEELVLVSDDEFKLSQLKDVLVSKLIKRNVPTKNIDYGKVENASGGTVRQRAKLVQG
                     IDKDNAKKINTIIKNSGLKVKSQVQDDQVRVTGKNKDDLQQIISAVRGADLPIDVQFI
                     NFR*"
                     /label="yitK CDS"
     gene            complement(1105134..1105625)
                     /gene="yitK"
                     /locus_tag="BSU_11020"
                     /old_locus_tag="BSU11020"
                     /label="yitK gene"
     promotor_-35    1105643..1105646
                     /Source="Nicolas_upshift_promotors"
                     /id="U886"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.555444555444555"
                     /psig="0.997002997002997"
                     /xcortree=2548
                     /SigmaFactorBS="atcaaatgaactttcttttgccatatgaaaacctccataacA
                     TTTaacttatgtgttgaTTATAGTAGAATAAAGAGAAacttccaacagaacaaagaat
                     c"
                     /listShort="yitL"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    complement(1105649..1105668)
                     /Source="Nicolas_upshift_promotors"
                     /id="U887"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.851148851148851"
                     /psig=1
                     /xcortree=3057
                     /SigmaFactorBS="acattttttccaatcatcacaaattgattctttgttcTGTTG
                     GAAgtttctctttattcTACTATAATCAACACATAAGttaaatgttatggaggttttc
                     a"
                     /listShort="yitK, NA, yitJ"
                     /listLong="yitI, yitH"
                     /label="promotor_-10"
     promotor_-10    1105661..1105680
                     /Source="Nicolas_upshift_promotors"
                     /id="U886"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.555444555444555"
                     /psig="0.997002997002997"
                     /xcortree=2548
                     /SigmaFactorBS="atcaaatgaactttcttttgccatatgaaaacctccataacA
                     TTTaacttatgtgttgaTTATAGTAGAATAAAGAGAAacttccaacagaacaaagaat
                     c"
                     /listShort="yitL"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        1105662
                     /Source="Nicolas_upshifts"
                     /id="U886"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.555444555444555"
                     /psig="0.997002997002997"
                     /xcortree=2548
                     /SigmaFactorBS="atcaaatgaactttcttttgccatatgaaaacctccataacA
                     TTTaacttatgtgttgaTTATAGTAGAATAAAGAGAAacttccaacagaacaaagaat
                     c"
                     /listShort="yitL"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     upshifts        complement(1105667)
                     /Source="Nicolas_upshifts"
                     /id="U887"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.851148851148851"
                     /psig=1
                     /xcortree=3057
                     /SigmaFactorBS="acattttttccaatcatcacaaattgattctttgttcTGTTG
                     GAAgtttctctttattcTACTATAATCAACACATAAGttaaatgttatggaggttttc
                     a"
                     /listShort="yitK, NA, yitJ"
                     /listLong="yitI, yitH"
                     /label="upshifts"
     promotor_-35    complement(1105683..1105690)
                     /Source="Nicolas_upshift_promotors"
                     /id="U887"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.851148851148851"
                     /psig=1
                     /xcortree=3057
                     /SigmaFactorBS="acattttttccaatcatcacaaattgattctttgttcTGTTG
                     GAAgtttctctttattcTACTATAATCAACACATAAGttaaatgttatggaggttttc
                     a"
                     /listShort="yitK, NA, yitJ"
                     /listLong="yitI, yitH"
                     /label="promotor_-35"
     CDS             1105724..1106620
                     /gene="yitL"
                     /locus_tag="BSU_11030"
                     /old_locus_tag="BSU11030"
                     /function="9.4: RNA processing"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 2a: Function from experimental evidences
                     in other organisms; PubMedId: 20399190; Product type f :
                     factor"
                     /codon_start=1
                     /transl_table=11
                     /product="RNA-binding protein"
                     /protein_id="NP_388984.1"
                     /db_xref="EnsemblGenomes-Gn:BSU11030"
                     /db_xref="EnsemblGenomes-Tr:CAB12943"
                     /db_xref="GOA:O06747"
                     /db_xref="InterPro:IPR003029"
                     /db_xref="InterPro:IPR012340"
                     /db_xref="InterPro:IPR014464"
                     /db_xref="InterPro:IPR022967"
                     /db_xref="InterPro:IPR036388"
                     /db_xref="SubtiList:BG13117"
                     /db_xref="UniProtKB/Swiss-Prot:O06747"
                     /translation="MLTKSAENKRNRKDDSMRPGQQLTLSIDHQTDFGYFLTDGEDTI
                     LLHNSEMTEDIEDRDEVEVFIYVDQQERLAATMKIPIISADEYGWVEVVDKVEDMGVF
                     VDVGLSKDALVATEHLPPYEDVWPQKGDKLYCMLKVTNRGRMFAKPAPEDIISELFTD
                     ASEDLMNKELTGTVYRLIASGSFVITDDGIRCFIHPSERKEEPRLGSRVTGRVIQVKE
                     DGSVNLSLLPRKQDAMSVDAECILTYMRMRNGAMPYSDKSQPDDIRERFNMSKAAFKR
                     ALGHLMKNGKVYQENGWTYEKK*"
                     /label="yitL CDS"
     gene            1105724..1106620
                     /gene="yitL"
                     /locus_tag="BSU_11030"
                     /old_locus_tag="BSU11030"
                     /label="yitL gene"
     downshifts      1106607
                     /Source="Nicolas_upshifts"
                     /id="D599"
                     /incds=0
                     /nref=232
                     /ntot=261
                     /MaxReadThrough="1.78082"
                     /MaxDrop="6.73614"
                     /score="40.361011"
                     /energy="-21.5"
                     /TU="NA"
                     /idTUdmin="U886"
                     /TUdmin=0
                     /isTUend="TRUE"
                     /label="downshifts"
     CDS             complement(1106673..1107257)
                     /gene="yitM"
                     /locus_tag="BSU_11040"
                     /old_locus_tag="BSU11040"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms; PubMedId: 11557812"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved hypothetical protein"
                     /protein_id="NP_388985.1"
                     /db_xref="EnsemblGenomes-Gn:BSU11040"
                     /db_xref="EnsemblGenomes-Tr:CAB12944"
                     /db_xref="GOA:O06748"
                     /db_xref="InterPro:IPR023888"
                     /db_xref="SubtiList:BG13118"
                     /db_xref="UniProtKB/Swiss-Prot:O06748"
                     /translation="MKKAFLVFLSVVLVTTVFLVKQQESVAQAKQLEYSGEEIFKGFV
                     FAQGEVGKQLPEVFNKAMTDKLNTKQAKAFANQVVADIKKEDADFFDNLKKAVYSKDA
                     LKVDELLKKAGQIVEEKVEAAKEIAASKDDTSRVQAELVNTVDTANYFYYVSYVAAAG
                     ALILIILAIDITPIAISDNVDREMAIRTLVDELN*"
                     /label="yitM CDS"
     gene            complement(1106673..1107257)
                     /gene="yitM"
                     /locus_tag="BSU_11040"
                     /old_locus_tag="BSU11040"
                     /label="yitM gene"
     downshifts      complement(1106683)
                     /Source="Nicolas_upshifts"
                     /id="D600"
                     /incds=0
                     /nref=68
                     /ntot=158
                     /MaxReadThrough="1.3386"
                     /MaxDrop="7.40935"
                     /score="10.143892"
                     /energy="-21.5"
                     /TU="NA"
                     /idTUdmin="U888"
                     /TUdmin=0
                     /isTUend="TRUE"
                     /label="downshifts"
     CDS             complement(1107254..1108183)
                     /gene="yitO"
                     /locus_tag="BSU_11055"
                     /old_locus_tag="BSU11055"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 11557812, 15849754,
                     16850406; Product type m: membrane component"
                     /codon_start=1
                     /transl_table=11
                     /product="putative integral inner membrane protein with
                     HTTM domain"
                     /protein_id="NP_388987.2"
                     /db_xref="EnsemblGenomes-Gn:BSU11055"
                     /db_xref="EnsemblGenomes-Tr:CAB12946"
                     /db_xref="GOA:O06750"
                     /db_xref="InterPro:IPR011020"
                     /db_xref="InterPro:IPR023894"
                     /db_xref="SubtiList:BG13120"
                     /db_xref="UniProtKB/Swiss-Prot:O06750"
                     /translation="MLENIKQTITRWDERNPWTNVYGLARSIIALSSLLTLLINHPSL
                     IMKPASGISSYPACKMNLSLFCLGENNYMMLNLFRWVCIAILVLVVIGWRPRITGVLH
                     WYVSYSLQSSLIVIDGGEQAAAVMTFLLLPITLTDPRKWHWSTRPIEGKRTLGKITAF
                     ISYFVIRIQVAVLYFHSTVAKLSQQEWVDGTAVYYFAQEKTIGFNGFFQALTKPIVTS
                     PFVVIPTWGTLLVQIVIFAALFAPKKHWRLILIIAVFMHEIFAVMLGLISFSIIMAGI
                     LILYLTPIDSTIQFTYIRRLLWNKKHKKGEVSV*"
                     /label="yitO CDS"
     gene            complement(1107254..1108183)
                     /gene="yitO"
                     /locus_tag="BSU_11055"
                     /old_locus_tag="BSU11055"
                     /label="yitO gene"
     upshifts        complement(1107341)
                     /Source="Nicolas_upshifts"
                     /id="U888"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.232767232767233"
                     /psig="0.63936063936064"
                     /xcortree=2974
                     /SigmaFactorBS="agtcatgctgggcctcatcagtttttcgattatcatggccgg
                     cattttgatattgtatctcaCtcctatcgattccacgattcaatttacatatattcgc
                     a"
                     /listShort="yitM"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             complement(1108168..1108704)
                     /gene="yitP"
                     /locus_tag="BSU_11070"
                     /old_locus_tag="BSU11070"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms; PubMedId: 6289325, 11557812"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved hypothetical protein"
                     /protein_id="NP_388988.1"
                     /db_xref="EnsemblGenomes-Gn:BSU11070"
                     /db_xref="EnsemblGenomes-Tr:CAB12947"
                     /db_xref="GOA:O06751"
                     /db_xref="InterPro:IPR023902"
                     /db_xref="SubtiList:BG13121"
                     /db_xref="UniProtKB/Swiss-Prot:O06751"
                     /translation="MQKSISFFVIFSILWGSLFLFSIIGSLGTTPIPLTKDSKFLMSS
                     ILPQGWGFFSKNPRDTAIGLYEAENASAKVRWPNMRADNLFGLYRYGRSQGVEMGVIY
                     SQVGKEQWTACKEKDLGACKSKAKTVQLKTPAPRPLLCGSYYLTKEDIVPWSYSKYTP
                     SSYQVKSIVKVVISCSKT*"
                     /label="yitP CDS"
     gene            complement(1108168..1108704)
                     /gene="yitP"
                     /locus_tag="BSU_11070"
                     /old_locus_tag="BSU11070"
                     /label="yitP gene"
     promotor_-10    complement(1108740..1108759)
                     /Source="Nicolas_upshift_promotors"
                     /id="U889"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.71028971028971"
                     /psig="0.988011988011988"
                     /xcortree=2975
                     /SigmaFactorBS="ccttttaacaaaaatggaatttctcatactttttaacCTTTt
                     tattacataaatgTTTTTATATTATGAAAAGTGtaaaaacgattcttcaggttaaaag
                     g"
                     /listShort="yitP"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(1108754)
                     /Source="Nicolas_upshifts"
                     /id="U889"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.71028971028971"
                     /psig="0.988011988011988"
                     /xcortree=2975
                     /SigmaFactorBS="ccttttaacaaaaatggaatttctcatactttttaacCTTTt
                     tattacataaatgTTTTTATATTATGAAAAGTGtaaaaacgattcttcaggttaaaag
                     g"
                     /listShort="yitP"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(1108774..1108777)
                     /Source="Nicolas_upshift_promotors"
                     /id="U889"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.71028971028971"
                     /psig="0.988011988011988"
                     /xcortree=2975
                     /SigmaFactorBS="ccttttaacaaaaatggaatttctcatactttttaacCTTTt
                     tattacataaatgTTTTTATATTATGAAAAGTGtaaaaacgattcttcaggttaaaag
                     g"
                     /listShort="yitP"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-35    1108845..1108852
                     /Source="Nicolas_upshift_promotors"
                     /id="U890"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.767232767232767"
                     /psig=1
                     /xcortree=3150
                     /SigmaFactorBS="aaaggaaaaacaggacattttacactgctatatgtGATTGAT
                     AtatagtgtttttttCGATATATTTAAACCATGAAaacgaatcaagttaatgaccgct
                     g"
                     /listShort="yizB, yitQ, yitR"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    1108867..1108886
                     /Source="Nicolas_upshift_promotors"
                     /id="U890"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.767232767232767"
                     /psig=1
                     /xcortree=3150
                     /SigmaFactorBS="aaaggaaaaacaggacattttacactgctatatgtGATTGAT
                     AtatagtgtttttttCGATATATTTAAACCATGAAaacgaatcaagttaatgaccgct
                     g"
                     /listShort="yizB, yitQ, yitR"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        1108870
                     /Source="Nicolas_upshifts"
                     /id="U890"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.767232767232767"
                     /psig=1
                     /xcortree=3150
                     /SigmaFactorBS="aaaggaaaaacaggacattttacactgctatatgtGATTGAT
                     AtatagtgtttttttCGATATATTTAAACCATGAAaacgaatcaagttaatgaccgct
                     g"
                     /listShort="yizB, yitQ, yitR"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             1108882..1109229
                     /gene="yizB"
                     /locus_tag="BSU_11079"
                     /old_locus_tag="BSU11079"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 23504016; Product type
                     r: regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="putative transcriptional regulator"
                     /protein_id="YP_003097701.1"
                     /db_xref="EnsemblGenomes-Gn:BSU11079"
                     /db_xref="EnsemblGenomes-Tr:CAX52589"
                     /db_xref="GOA:C0H3Y4"
                     /db_xref="InterPro:IPR005149"
                     /db_xref="InterPro:IPR036388"
                     /db_xref="InterPro:IPR036390"
                     /db_xref="UniProtKB/Swiss-Prot:C0H3Y4"
                     /translation="MKTNQVNDRWIVQFRKGIFELAILSLLRSKPMYGYELTSSLKTT
                     SALAISEGAIYPILKRMTEKGWIEFFWEDSLDGPKRKYYKMTQKGEEMLKERLEKYLE
                     THQALLSLSGDLL*"
                     /label="yizB CDS"
     gene            1108882..1109229
                     /gene="yizB"
                     /locus_tag="BSU_11079"
                     /old_locus_tag="BSU11079"
                     /label="yizB gene"
     CDS             1109226..1109813
                     /gene="yitQ"
                     /locus_tag="BSU_11080"
                     /old_locus_tag="BSU11080"
                     /function="18: Unknown function"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms; PubMedId: 23504016"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved protein of unknown function"
                     /protein_id="NP_388989.2"
                     /db_xref="EnsemblGenomes-Gn:BSU11080"
                     /db_xref="EnsemblGenomes-Tr:CAB12948"
                     /db_xref="GOA:O06752"
                     /db_xref="SubtiList:BG13122"
                     /db_xref="UniProtKB/Swiss-Prot:O06752"
                     /translation="MNGQLIIDRYMEELNAELANMPDVERENAIDELKGHITAFVQDR
                     IKAGLSEEELQEAVESEFSHPKELAELMMGDGGETKRRRSLLGKSWISVLLIVTIIAL
                     PLLPSDFRHLPLAVYLMVLAGYVWKRKKLVMFAGVRKNKMRSQKEIVKISRVGAVYLL
                     FLAVVLLLSPFLNALVVLLLIAVSCAAFFLFLNIK*"
                     /label="yitQ CDS"
     gene            1109226..1109813
                     /gene="yitQ"
                     /locus_tag="BSU_11080"
                     /old_locus_tag="BSU11080"
                     /label="yitQ gene"
     CDS             1109833..1110126
                     /gene="yitR"
                     /locus_tag="BSU_11090"
                     /old_locus_tag="BSU11090"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved protein of unknown function"
                     /protein_id="NP_388990.1"
                     /db_xref="EnsemblGenomes-Gn:BSU11090"
                     /db_xref="EnsemblGenomes-Tr:CAB12949"
                     /db_xref="GOA:O06753"
                     /db_xref="InterPro:IPR017259"
                     /db_xref="SubtiList:BG13123"
                     /db_xref="UniProtKB/Swiss-Prot:O06753"
                     /translation="MEISINYLLIVIALLFFVVAYFVGIKKQTWMLAGFNEARIRDKD
                     RLARIAGYFFLNSGLFILLNSFISFQGQEQLIPPLILAYGAGVIIYVNKKLVE*"
                     /label="yitR CDS"
     gene            1109833..1110126
                     /gene="yitR"
                     /locus_tag="BSU_11090"
                     /old_locus_tag="BSU11090"
                     /label="yitR gene"
     downshifts      1110106
                     /Source="Nicolas_upshifts"
                     /id="D601"
                     /incds=0
                     /nref=119
                     /ntot=240
                     /MaxReadThrough="1.96008"
                     /MaxDrop="5.72545"
                     /score="2.11183863"
                     /energy="-12.6"
                     /TU="NA"
                     /idTUdmin="U890"
                     /TUdmin=0
                     /isTUend="TRUE"
                     /label="downshifts"
     downshifts      1110150
                     /Source="Nicolas_upshifts"
                     /id="D602"
                     /incds=0
                     /nref=1
                     /ntot=15
                     /MaxReadThrough="0.34732"
                     /MaxDrop="3.0285"
                     /score="2.11183863"
                     /energy="-12.6"
                     /TU="NA"
                     /idTUdmin="U890"
                     /TUdmin=44
                     /isTUend="FALSE"
                     /label="downshifts"
     CDS             1110262..1111878
                     /gene="nprB"
                     /locus_tag="BSU_11100"
                     /old_locus_tag="BSU11100"
                     /EC_number="3.4.24.-"
                     /function="16.11: Scavenge (Catabolism)"
                     /function="16.6: Maintain"
                     /experiment="publication(s) with functional evidences,
                     PMID:1917867, 16672610"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 1917867, 16672610;
                     Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="extracellular neutral protease B"
                     /protein_id="NP_388991.1"
                     /db_xref="EnsemblGenomes-Gn:BSU11100"
                     /db_xref="EnsemblGenomes-Tr:CAB12950"
                     /db_xref="GOA:P39899"
                     /db_xref="InterPro:IPR001570"
                     /db_xref="InterPro:IPR011096"
                     /db_xref="InterPro:IPR013856"
                     /db_xref="InterPro:IPR023612"
                     /db_xref="InterPro:IPR025711"
                     /db_xref="SubtiList:BG10691"
                     /db_xref="UniProtKB/Swiss-Prot:P39899"
                     /translation="MRNLTKTSLLLAGLCTAAQMVFVTHASAEESIEYDHTYQTPSYI
                     IEKSPQKPVQNTTQKESLFSYLDKHQTQFKLKGNANSHFRVSKTIKDPKTKQTFFKLT
                     EVYKGIPIYGFEQAVAMKENKQVKSFFGKVHPQIKDVSVTPSISEKKAIHTARRELEA
                     SIGKIEYLDGEPKGELYIYPHDGEYDLAYLVRLSTSEPEPGYWHYFIDAKNGKVIESF
                     NAIHEAAGTGIGVSGDEKSFDVTEQNGRFYLADETRGKGINTFDAKNLNETLFTLLSQ
                     LIGYTGKEIVSGTSVFNEPAAVDAHANAQAVYDYYSKTFGRDSFDQNGARITSTVHVG
                     KQWNNAAWNGVQMVYGDGDGSKFKPLSGSLDIVAHEITHAVTQYSAGLLYQGEPGALN
                     ESISDIMGAMADRDDWEIGEDVYTPGIAGDSLRSLEDPSKQGNPDHYSNRYTGTEDYG
                     GVHINSSIHNKAAYLLAEGGVHHGVQVEGIGREASEQIYYRALTYYVTASTDFSMMKQ
                     AAIEAANDLYGEGSKQSASVEKAYEAVGIL*"
                     /label="nprB CDS"
     gene            1110262..1111878
                     /gene="nprB"
                     /locus_tag="BSU_11100"
                     /old_locus_tag="BSU11100"
                     /label="nprB gene"
     downshifts      1111866
                     /Source="Nicolas_upshifts"
                     /id="D603"
                     /incds=0
                     /nref=2
                     /ntot=55
                     /MaxReadThrough="0.278770000000001"
                     /MaxDrop="3.08544"
                     /score="2.81939887"
                     /energy="-8.6"
                     /TU="NA"
                     /idTUdmin="U890"
                     /TUdmin=1760
                     /isTUend="FALSE"
                     /label="downshifts"
     CDS             complement(1111925..1112776)
                     /gene="fakBB"
                     /locus_tag="BSU_11110"
                     /old_locus_tag="BSU11110"
                     /function="16.2: Construct biomass (Anabolism)"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 2b: Function from indirect experimental
                     evidences (e.g. phenotypes); PubMedId: 25002480, 26774272,
                     27435445; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="fatty acid kinase fatty acid binding subunit B"
                     /protein_id="NP_388992.1"
                     /db_xref="EnsemblGenomes-Gn:BSU11110"
                     /db_xref="EnsemblGenomes-Tr:CAB12951"
                     /db_xref="GOA:P70945"
                     /db_xref="InterPro:IPR003797"
                     /db_xref="SubtiList:BG12244"
                     /db_xref="UniProtKB/Swiss-Prot:P70945"
                     /translation="MTVHLIADSATDLPRSYFEEKGIGFIPLRVSLGDKEFEDAVTIH
                     ADQIFEAMQNGETPKTSQASPQTIKNVFLQYAETGDPALYIAFSSGLSGTYQTAVMIA
                     NEVKEEFPDFDLRVIDSKCASLGYGLAVRHAADLCINGNTIQEIETSVKNFCSQLEHI
                     FTVDDLTYLARGGRISKTSAFVGGLLNIKPLLQMEDGKLVPLEKIRGQKKLFKRIIEL
                     MKERGDDWSNQTVGISYAANKEKATDMKHLIEEAFKPKEIIMHPISSAIGSHAGPGTL
                     AIFFLRK*"
                     /label="fakBB CDS"
     gene            complement(1111925..1112776)
                     /gene="fakBB"
                     /locus_tag="BSU_11110"
                     /old_locus_tag="BSU11110"
                     /label="fakBB gene"
     downshifts      complement(1111942)
                     /Source="Nicolas_upshifts"
                     /id="D604"
                     /incds=0
                     /nref=209
                     /ntot=263
                     /MaxReadThrough="0.727580000000001"
                     /MaxDrop="6.86927"
                     /score="-1.24586831"
                     /energy="-7.7"
                     /TU="NA"
                     /idTUdmin="U892"
                     /TUdmin=0
                     /isTUend="TRUE"
                     /label="downshifts"
     promotor_-35    1112323..1112330
                     /Source="Nicolas_upshift_promotors"
                     /id="U891"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.78021978021978"
                     /psig="0.996003996003996"
                     /xcortree=2481
                     /SigmaFactorBS="gtaaaaatgtgttcaagctggctgcaaaagtTCTTTACAgac
                     gtttcaatttcTTGTATTGTATTCCCGTTGAtacagagatcggcagcatgccggacag
                     c"
                     /listShort="S395, yitT, S396, ipi"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    1112345..1112364
                     /Source="Nicolas_upshift_promotors"
                     /id="U891"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.78021978021978"
                     /psig="0.996003996003996"
                     /xcortree=2481
                     /SigmaFactorBS="gtaaaaatgtgttcaagctggctgcaaaagtTCTTTACAgac
                     gtttcaatttcTTGTATTGTATTCCCGTTGAtacagagatcggcagcatgccggacag
                     c"
                     /listShort="S395, yitT, S396, ipi"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     S_feature       1112350..1112875
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1188125_1188650"
                     /HighExp="G180, Paraq, G135, G150, Oxctl, C30, H2O2,
                     LBGstat, LBGexp, Lbexp"
                     /AntisenseName="yitS"
                     /AntisenseCor="-0.45830528686941202"
                     /AntisenseRegPval="-14.6"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.996"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S395"
     upshifts        1112352
                     /Source="Nicolas_upshifts"
                     /id="U891"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.78021978021978"
                     /psig="0.996003996003996"
                     /xcortree=2481
                     /SigmaFactorBS="gtaaaaatgtgttcaagctggctgcaaaagtTCTTTACAgac
                     gtttcaatttcTTGTATTGTATTCCCGTTGAtacagagatcggcagcatgccggacag
                     c"
                     /listShort="S395, yitT, S396, ipi"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-10    complement(1112817..1112836)
                     /Source="Nicolas_upshift_promotors"
                     /id="U892"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.558441558441558"
                     /psig="0.841158841158841"
                     /xcortree=594
                     /SigmaFactorBS="gctctttcttctttattatgttttcccttaaaacaaatattt
                     gaAcacgattttggcaaattaaTATGATATAGTTGGCTTAACtctcatgataacgagc
                     g"
                     /listShort="yitS"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(1112840)
                     /Source="Nicolas_upshifts"
                     /id="U892"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.558441558441558"
                     /psig="0.841158841158841"
                     /xcortree=594
                     /SigmaFactorBS="gctctttcttctttattatgttttcccttaaaacaaatattt
                     gaAcacgattttggcaaattaaTATGATATAGTTGGCTTAACtctcatgataacgagc
                     g"
                     /listShort="yitS"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    1112854..1112859
                     /Source="Nicolas_upshift_promotors"
                     /id="U893"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp="0.998001998001998"
                     /psig="0.998001998001998"
                     /xcortree=738
                     /SigmaFactorBS="gttaagccaactatatcatattaatttgccaaaatcgTGTTC
                     AaatatttgttttaaGGGAAAACATAATAAAGAAgaaagagcggaggaacatgccatg
                     g"
                     /listShort="yitT, S396, ipi"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    1112874..1112892
                     /Source="Nicolas_upshift_promotors"
                     /id="U893"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp="0.998001998001998"
                     /psig="0.998001998001998"
                     /xcortree=738
                     /SigmaFactorBS="gttaagccaactatatcatattaatttgccaaaatcgTGTTC
                     AaatatttgttttaaGGGAAAACATAATAAAGAAgaaagagcggaggaacatgccatg
                     g"
                     /listShort="yitT, S396, ipi"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        1112877
                     /Source="Nicolas_upshifts"
                     /id="U893"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp="0.998001998001998"
                     /psig="0.998001998001998"
                     /xcortree=738
                     /SigmaFactorBS="gttaagccaactatatcatattaatttgccaaaatcgTGTTC
                     AaatatttgttttaaGGGAAAACATAATAAAGAAgaaagagcggaggaacatgccatg
                     g"
                     /listShort="yitT, S396, ipi"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             1112914..1113756
                     /gene="yitT"
                     /locus_tag="BSU_11120"
                     /old_locus_tag="BSU11120"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 15849754, 16850406,
                     23419162, 23824080; Product type m: membrane component"
                     /codon_start=1
                     /transl_table=11
                     /product="putative integral membrane protein"
                     /protein_id="NP_388993.1"
                     /db_xref="EnsemblGenomes-Gn:BSU11120"
                     /db_xref="EnsemblGenomes-Tr:CAB12952"
                     /db_xref="GOA:P39803"
                     /db_xref="InterPro:IPR003740"
                     /db_xref="InterPro:IPR019264"
                     /db_xref="SubtiList:BG10850"
                     /db_xref="UniProtKB/Swiss-Prot:P39803"
                     /translation="MVLDQTKKLLIVIIGALLNAAGLNLFLIPADVYASGFTGVAQLL
                     SSVVDQYAPFYISTGTLLFLLNIPVGILGWLKVGKSFTVYSILSVALTTLFMGILPET
                     SLSHDILLNAVFGGVISAVGIGLTLKYGASTGGLDIVAMVLAKWKDKPVGTYFFILNG
                     IIILTAGLLQGWEKALYTLVTLYVTTRVIDAIHTRHMKLTAMIVTKKADEIKEAIYGK
                     MVRGITTVPAKGAFTNEQKEMMIIVITRYELYDLEKIVKEVDPKAFTNIVQTTGIFGF
                     FRKD*"
                     /label="yitT CDS"
     gene            1112914..1113756
                     /gene="yitT"
                     /locus_tag="BSU_11120"
                     /old_locus_tag="BSU11120"
                     /label="yitT gene"
     promotor_-35    1113409..1113417
                     /Source="Nicolas_upshift_promotors"
                     /id="U894"
                     /multdbtbs="-"
                     /comp="M1"
                     /sig="SigH"
                     /pcomp="0.968031968031968"
                     /psig="0.968031968031968"
                     /xcortree=467
                     /SigmaFactorBS="gcacgtatttcttcattctgaacgggattatcatcttgacgG
                     CAGGATTAttgcaaggttGGGAGAAAGCATTATATACcctggttacactatatgtgac
                     a"
                     /listShort="S396, ipi"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    1113428..1113446
                     /Source="Nicolas_upshift_promotors"
                     /id="U894"
                     /multdbtbs="-"
                     /comp="M1"
                     /sig="SigH"
                     /pcomp="0.968031968031968"
                     /psig="0.968031968031968"
                     /xcortree=467
                     /SigmaFactorBS="gcacgtatttcttcattctgaacgggattatcatcttgacgG
                     CAGGATTAttgcaaggttGGGAGAAAGCATTATATACcctggttacactatatgtgac
                     a"
                     /listShort="S396, ipi"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        1113428
                     /Source="Nicolas_upshifts"
                     /id="U894"
                     /multdbtbs="-"
                     /comp="M1"
                     /sig="SigH"
                     /pcomp="0.968031968031968"
                     /psig="0.968031968031968"
                     /xcortree=467
                     /SigmaFactorBS="gcacgtatttcttcattctgaacgggattatcatcttgacgG
                     CAGGATTAttgcaaggttGGGAGAAAGCATTATATACcctggttacactatatgtgac
                     a"
                     /listShort="S396, ipi"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     S_feature       1113757..1113870
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1189532_1189645"
                     /HighExp="Etha, S8, Sw, M9-stat, S7, BC, Gly, S6, Salt,
                     C30"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigH, SigB, SigA"
                     /TUshortPSig="0.968, 0.998, 0.996"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S396"
     CDS             1113871..1114230
                     /gene="ipi"
                     /locus_tag="BSU_11130"
                     /old_locus_tag="BSU11130"
                     /function="16.8: Protect"
                     /function="16.3: Control"
                     /experiment="publication(s) with functional evidences,
                     PMID:8226659, 24555072"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 8226659, 24555072;
                     Product type f: factor"
                     /codon_start=1
                     /transl_table=11
                     /product="intracellular proteinase inhibitor BsuPI"
                     /protein_id="NP_388994.1"
                     /db_xref="EnsemblGenomes-Gn:BSU11130"
                     /db_xref="EnsemblGenomes-Tr:CAB12953"
                     /db_xref="GOA:P39804"
                     /db_xref="InterPro:IPR013783"
                     /db_xref="InterPro:IPR020481"
                     /db_xref="PDB:3ISY"
                     /db_xref="SubtiList:BG10852"
                     /db_xref="UniProtKB/Swiss-Prot:P39804"
                     /translation="MENQEVVLSIDAIQEPEQIKFNMSLKNQSERAIEFQFSTGQKFE
                     LVVYDSEHKERYRYSKEKMFTQAFQNLTLESGETYDFSDVWKEVPEPGTYEVKVTFKG
                     RAENLKQVQAVQQFEVK*"
                     /label="ipi CDS"
     gene            1113871..1114230
                     /gene="ipi"
                     /locus_tag="BSU_11130"
                     /old_locus_tag="BSU11130"
                     /label="ipi gene"
     downshifts      1114219
                     /Source="Nicolas_upshifts"
                     /id="D605"
                     /incds=0
                     /nref=34
                     /ntot=224
                     /MaxReadThrough="1.36729"
                     /MaxDrop="5.6855"
                     /score="43.7575824"
                     /energy="-15.6"
                     /TU="NA"
                     /idTUdmin="U893"
                     /TUdmin="-1"
                     /isTUend="TRUE"
                     /label="downshifts"
     CDS             complement(1114261..1114458)
                     /gene="yizC"
                     /locus_tag="BSU_11139"
                     /old_locus_tag="BSU11139"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved hypothetical protein; genus orphan"
                     /protein_id="YP_003097702.1"
                     /db_xref="EnsemblGenomes-Gn:BSU11139"
                     /db_xref="EnsemblGenomes-Tr:CAX52590"
                     /db_xref="InterPro:IPR024217"
                     /db_xref="UniProtKB/Swiss-Prot:C0H3Y5"
                     /translation="MRNELFQQAKSFVQQAVMVTNGFEEGDQEQAILRAKNAVSSAYA
                     NSTDAERQQLHQFQNQLDKLQ*"
                     /label="yizC CDS"
     gene            complement(1114261..1114458)
                     /gene="yizC"
                     /locus_tag="BSU_11139"
                     /old_locus_tag="BSU11139"
                     /label="yizC gene"
     downshifts      complement(1114274)
                     /Source="Nicolas_upshifts"
                     /id="D606"
                     /incds=0
                     /nref=150
                     /ntot=257
                     /MaxReadThrough="1.42333"
                     /MaxDrop="8.284"
                     /score="2.35557074"
                     /energy="-17.3"
                     /TU="NA"
                     /idTUdmin="U895"
                     /TUdmin=0
                     /isTUend="TRUE"
                     /label="downshifts"
     S_feature       complement(1114459..1114655)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1190234_1190430_c"
                     /HighExp="S8, S6, S5, S7, nit, ferm, BT, G/S, Pyr, S4"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="0.99834599999999996"
                     /TUshortSig="SigGF, SigA"
                     /TUshortPSig="1, 1"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S397"
     upshifts        complement(1114655)
                     /Source="Nicolas_upshifts"
                     /id="U895"
                     /multdbtbs="-"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp=1
                     /psig=1
                     /xcortree=848
                     /SigmaFactorBS="aagaaggtccgtattaatttttcccaCTCATAAaccttactt
                     tacccCACCATACTATTgaagacgactcatctcgtcaaagtatggaagggggcagtct
                     c"
                     /listShort="S397, yizC"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-10    complement(1114657..1114668)
                     /Source="Nicolas_upshift_promotors"
                     /id="U895"
                     /multdbtbs="-"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp=1
                     /psig=1
                     /xcortree=848
                     /SigmaFactorBS="aagaaggtccgtattaatttttcccaCTCATAAaccttactt
                     tacccCACCATACTATTgaagacgactcatctcgtcaaagtatggaagggggcagtct
                     c"
                     /listShort="S397, yizC"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     promotor_-35    complement(1114683..1114689)
                     /Source="Nicolas_upshift_promotors"
                     /id="U895"
                     /multdbtbs="-"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp=1
                     /psig=1
                     /xcortree=848
                     /SigmaFactorBS="aagaaggtccgtattaatttttcccaCTCATAAaccttactt
                     tacccCACCATACTATTgaagacgactcatctcgtcaaagtatggaagggggcagtct
                     c"
                     /listShort="S397, yizC"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             complement(1114715..1115527)
                     /gene="ribZC"
                     /locus_tag="BSU_11140"
                     /old_locus_tag="BSU11140"
                     /function="4.9: Riboflavin, FMN, and FAD"
                     /function="16.11: Scavenge (Catabolism)"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 1b: Function from experimental evidences
                     in the studied species; PubMedId: 25012491, 26316208;
                     Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="5-amino-6-ribitylamino-2,4(1H,
                     3H)-pyrimidinedione 5'-phosphate phosphatase
                     (promiscuous)"
                     /protein_id="NP_388995.1"
                     /db_xref="EnsemblGenomes-Gn:BSU11140"
                     /db_xref="EnsemblGenomes-Tr:CAB12954"
                     /db_xref="GOA:P70947"
                     /db_xref="InterPro:IPR000150"
                     /db_xref="InterPro:IPR006379"
                     /db_xref="InterPro:IPR023214"
                     /db_xref="InterPro:IPR036412"
                     /db_xref="SubtiList:BG12245"
                     /db_xref="UniProtKB/Swiss-Prot:P70947"
                     /translation="METKPYLIALDLDGTLLKDDKTISENTLHTIQRLKDDGHYVCIS
                     TGRPYRSSSMYYQQMELTTPIVNFNGAFVHHPQDDSWGRYHTSLPLDVVKQLVDISES
                     YNVHNVLAEVIDDVYFHYHDEHLIDAFNMNTTNVTVGDLRENLGEDVTSVLIHAKEED
                     VPAIRSYLSDVHAEVIDHRRWAAPWHVIEIIKSGMNKAVGLQKISDYYGVPRERIIAF
                     GDEDNDLEMLEFAGCGVAMGNGIDAVKQIANRTTATNEEDGVARFLKEYFSL*"
                     /label="ribZC CDS"
     gene            complement(1114715..1115527)
                     /gene="ribZC"
                     /locus_tag="BSU_11140"
                     /old_locus_tag="BSU11140"
                     /label="ribZC gene"
     promotor_-10    complement(1115565..1115584)
                     /Source="Nicolas_upshift_promotors"
                     /id="U896"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.483516483516484"
                     /psig=1
                     /xcortree=2075
                     /SigmaFactorBS="tgtgcccctccttaggataaccataatcataagtgtaacaTG
                     TAGACAataaagatggtaaAAAGCTACACTGTAAGTAAGgcaaaacaagcaaaatcta
                     a"
                     /listShort="yitU, S397, yizC"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     promotor_-35    1115585..1115592
                     /Source="Nicolas_upshift_promotors"
                     /id="U897"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.98001998001998"
                     /psig=1
                     /xcortree=1854
                     /SigmaFactorBS="tagattttgcttgttttgccttacttacagtgtagctttTTA
                     CCATCtttattgtctaCATGTTACACTTATGATTATggttatcctaaggaggggcaca
                     t"
                     /listShort="yitV, yitW, S398, yitY, yitZ"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     upshifts        complement(1115585)
                     /Source="Nicolas_upshifts"
                     /id="U896"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.483516483516484"
                     /psig=1
                     /xcortree=2075
                     /SigmaFactorBS="tgtgcccctccttaggataaccataatcataagtgtaacaTG
                     TAGACAataaagatggtaaAAAGCTACACTGTAAGTAAGgcaaaacaagcaaaatcta
                     a"
                     /listShort="yitU, S397, yizC"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(1115598..1115605)
                     /Source="Nicolas_upshift_promotors"
                     /id="U896"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.483516483516484"
                     /psig=1
                     /xcortree=2075
                     /SigmaFactorBS="tgtgcccctccttaggataaccataatcataagtgtaacaTG
                     TAGACAataaagatggtaaAAAGCTACACTGTAAGTAAGgcaaaacaagcaaaatcta
                     a"
                     /listShort="yitU, S397, yizC"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    1115604..1115623
                     /Source="Nicolas_upshift_promotors"
                     /id="U897"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.98001998001998"
                     /psig=1
                     /xcortree=1854
                     /SigmaFactorBS="tagattttgcttgttttgccttacttacagtgtagctttTTA
                     CCATCtttattgtctaCATGTTACACTTATGATTATggttatcctaaggaggggcaca
                     t"
                     /listShort="yitV, yitW, S398, yitY, yitZ"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        1115606
                     /Source="Nicolas_upshifts"
                     /id="U897"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.98001998001998"
                     /psig=1
                     /xcortree=1854
                     /SigmaFactorBS="tagattttgcttgttttgccttacttacagtgtagctttTTA
                     CCATCtttattgtctaCATGTTACACTTATGATTATggttatcctaaggaggggcaca
                     t"
                     /listShort="yitV, yitW, S398, yitY, yitZ"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             1115648..1116415
                     /gene="yitV"
                     /locus_tag="BSU_11150"
                     /old_locus_tag="BSU11150"
                     /EC_number="3.1.-.-"
                     /function="16.11: Scavenge (Catabolism)"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 28293230; Product type
                     e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative carboxylesterase"
                     /protein_id="NP_388996.1"
                     /db_xref="EnsemblGenomes-Gn:BSU11150"
                     /db_xref="EnsemblGenomes-Tr:CAB12955"
                     /db_xref="GOA:P70948"
                     /db_xref="InterPro:IPR001375"
                     /db_xref="InterPro:IPR029058"
                     /db_xref="SubtiList:BG12246"
                     /db_xref="UniProtKB/Swiss-Prot:P70948"
                     /translation="MIQIENQTVSGIPFLHIVKEENRHRAVPLVIFIHGFTSAKEHNL
                     HIAYLLAEKGFRAVLPEALHHGERGEEMAVEELAGHFWDIVLNEIEEIGVLKNHFEKE
                     GLIDGGRIGLAGTSMGGITTLGALTAYDWIKAGVSLMGSPNYVELFQQQIDHIQSQGI
                     EIDVPEEKVQQLMKRLELRDLSLQPEKLQQRPLLFWHGAKDKVVPYAPTRKFYDTIKS
                     HYSEQPERLQFIGDENADHKVPRAAVLKTIEWFETYL*"
                     /label="yitV CDS"
     gene            1115648..1116415
                     /gene="yitV"
                     /locus_tag="BSU_11150"
                     /old_locus_tag="BSU11150"
                     /label="yitV gene"
     promotor_-35    1116424..1116430
                     /Source="Nicolas_upshift_promotors"
                     /id="U898"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.723276723276723"
                     /psig=1
                     /xcortree=2071
                     /SigmaFactorBS="aaacgattgaatggtttgaaacgtacttataaagcactaaGT
                     TATTAacaagagctgaattTACGTTATACTGTAGAAAAAaggagtgagggaacgtgga
                     a"
                     /listShort="yitW, S398, yitY, yitZ"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     upshifts        1116444
                     /Source="Nicolas_upshifts"
                     /id="U898"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.723276723276723"
                     /psig=1
                     /xcortree=2071
                     /SigmaFactorBS="aaacgattgaatggtttgaaacgtacttataaagcactaaGT
                     TATTAacaagagctgaattTACGTTATACTGTAGAAAAAaggagtgagggaacgtgga
                     a"
                     /listShort="yitW, S398, yitY, yitZ"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-10    1116445..1116464
                     /Source="Nicolas_upshift_promotors"
                     /id="U898"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.723276723276723"
                     /psig=1
                     /xcortree=2071
                     /SigmaFactorBS="aaacgattgaatggtttgaaacgtacttataaagcactaaGT
                     TATTAacaagagctgaattTACGTTATACTGTAGAAAAAaggagtgagggaacgtgga
                     a"
                     /listShort="yitW, S398, yitY, yitZ"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     CDS             1116479..1116787
                     /gene="yitW"
                     /locus_tag="BSU_11160"
                     /old_locus_tag="BSU11160"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 9209063; Product type
                     f: factor"
                     /codon_start=1
                     /transl_table=11
                     /product="putative protein involved in Fe-S cluster
                     assembly, PaaD-like"
                     /protein_id="NP_388997.1"
                     /db_xref="EnsemblGenomes-Gn:BSU11160"
                     /db_xref="EnsemblGenomes-Tr:CAB12956"
                     /db_xref="InterPro:IPR002744"
                     /db_xref="InterPro:IPR034904"
                     /db_xref="SubtiList:BG12247"
                     /db_xref="UniProtKB/Swiss-Prot:P70949"
                     /translation="MEEALKENIMGALEQVVDPELGVDIVNLGLVYDVDMDEDGLTHI
                     TMTLTSMGCPLAPIIVDEVKKALADLPEVKDTEVHIVWNPPWTRDKMSRYAKIALGIQ
                     *"
                     /label="yitW CDS"
     gene            1116479..1116787
                     /gene="yitW"
                     /locus_tag="BSU_11160"
                     /old_locus_tag="BSU11160"
                     /label="yitW gene"
     downshifts      1116772
                     /Source="Nicolas_upshifts"
                     /id="D607"
                     /incds=0
                     /nref=3
                     /ntot=55
                     /MaxReadThrough="5.65659"
                     /MaxDrop="4.5598"
                     /score="14.9971829"
                     /energy="-14.7"
                     /TU="U897,U898"
                     /idTUdmin="U897"
                     /TUdmin="-2244"
                     /isTUend="FALSE"
                     /label="downshifts"
     S_feature       1116817..1117082
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1192592_1192857"
                     /HighExp="Etha, dia15, dia5, H2O2, LoTm, Salt, S6, Diami,
                     S8, HiOs"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba=1
                     /TUshortSig="SigA, SigA"
                     /TUshortPSig="1, 1"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S398"
     CDS             1117083..1118513
                     /gene="yitY"
                     /locus_tag="BSU_11170"
                     /old_locus_tag="BSU11170"
                     /EC_number="1.-.-.-"
                     /function="16.11: Scavenge (Catabolism)"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 12682299, 16956367;
                     Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative FMN/FAD-binding oxidoreductase"
                     /protein_id="NP_388999.3"
                     /db_xref="EnsemblGenomes-Gn:BSU11170"
                     /db_xref="EnsemblGenomes-Tr:CAB12958"
                     /db_xref="GOA:Q796P5"
                     /db_xref="InterPro:IPR006094"
                     /db_xref="InterPro:IPR016164"
                     /db_xref="InterPro:IPR016166"
                     /db_xref="InterPro:IPR016167"
                     /db_xref="InterPro:IPR016169"
                     /db_xref="InterPro:IPR036318"
                     /db_xref="SubtiList:BG12249"
                     /db_xref="UniProtKB/Swiss-Prot:Q796P5"
                     /translation="MKKKLLAFALCTGAYAALFAYSVNSEQKTATSEMTDVSRLMPVK
                     IKQTVKGQEEEMLIDTVKEANRKNIKISIAGAQHSMGGHTYYEDGIVLDMTGYNKILS
                     LDQEKKTIRVQSGATWNDIQKYVNPYGLAVKVMQSQNIFTIGGSLSANAHGRDIRYGS
                     LIDTVKSFRLLKADGMIITVTPKDDLFTAVIGGYGLFGVILDVTLELTDDELYVMKTE
                     KMNYSTYSDYFSKHVKGNPDVRMHLARISTAKKGFLKDMYVTNYVLANHQDQLSSYSE
                     LKEDEYTGATKFALGLSRRYEWGRNWLWDTQQSYFLSQNGTEISRNNVMRSESKFLEY
                     ENNDNTDVLQEYFVPVKEYGSYIDDLRQTLSDEDLNLLNITIRYVQKNEKADLSYAKD
                     DMFSLVLLINEGFSKEDQADTARIIRRMTDVAIKHGGSYYLPYMTYQTKAQMRQAYPK
                     SEAFFQKKRTYDPDERFMNYFYQRYK*"
                     /label="yitY CDS"
     gene            1117083..1118513
                     /gene="yitY"
                     /locus_tag="BSU_11170"
                     /old_locus_tag="BSU11170"
                     /label="yitY gene"
     CDS             1118558..1119052
                     /gene="yitZ"
                     /locus_tag="BSU_11180"
                     /old_locus_tag="BSU11180"
                     /function="16.1: Circulate"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 15849754, 16850406;
                     Product type m: membrane component"
                     /codon_start=1
                     /transl_table=11
                     /product="putative transport protein"
                     /protein_id="NP_389000.1"
                     /db_xref="EnsemblGenomes-Gn:BSU11180"
                     /db_xref="EnsemblGenomes-Tr:CAB12959"
                     /db_xref="GOA:P70952"
                     /db_xref="InterPro:IPR011701"
                     /db_xref="InterPro:IPR020846"
                     /db_xref="InterPro:IPR036259"
                     /db_xref="SubtiList:BG12250"
                     /db_xref="UniProtKB/Swiss-Prot:P70952"
                     /translation="MFFASSLIFPFYILFVKNIGSSYTQFGFSYGLFGLSGALIYPLL
                     GRLSERFDSRYFLLLNSWGMAVLLLYVPHIGSVVQVYIVQVLLGLFGAMQKHGEKVLI
                     ANFTDSGERGKKIGNYHFWTAVFSAAAIMLGGFLADFFTVQMIFYASSILYFLSGLMM
                     MKTG*"
                     /label="yitZ CDS"
     gene            1118558..1119052
                     /gene="yitZ"
                     /locus_tag="BSU_11180"
                     /old_locus_tag="BSU11180"
                     /label="yitZ gene"
     downshifts      1119016
                     /Source="Nicolas_upshifts"
                     /id="D608"
                     /incds=0
                     /nref=49
                     /ntot=208
                     /MaxReadThrough="1.74762"
                     /MaxDrop="4.22077"
                     /score="34.1294744"
                     /energy="-13.2"
                     /TU="NA"
                     /idTUdmin="U897"
                     /TUdmin=0
                     /isTUend="TRUE"
                     /label="downshifts"
     promotor_-35    1119190..1119197
                     /Source="Nicolas_upshift_promotors"
                     /id="U899"
                     /multdbtbs="SigA"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.861138861138861"
                     /psig="0.999000999001"
                     /xcortree=2913
                     /SigmaFactorBS="gcggaattcccattgaacagaaaatttataaatgaataaaaa
                     tattaaatatacGATTGAATtaatttttattcaTGTTATAATGTTAAATAATTtcaca
                     a"
                     /listShort="argC, argJ, argB, argD, carA, carB, argF,
                     yjzC"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     upshifts        1119196
                     /Source="Nicolas_upshifts"
                     /id="U899"
                     /multdbtbs="SigA"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.861138861138861"
                     /psig="0.999000999001"
                     /xcortree=2913
                     /SigmaFactorBS="gcggaattcccattgaacagaaaatttataaatgaataaaaa
                     tattaaatatacGATTGAATtaatttttattcaTGTTATAATGTTAAATAATTtcaca
                     a"
                     /listShort="argC, argJ, argB, argD, carA, carB, argF,
                     yjzC"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-10    1119211..1119230
                     /Source="Nicolas_upshift_promotors"
                     /id="U899"
                     /multdbtbs="SigA"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.861138861138861"
                     /psig="0.999000999001"
                     /xcortree=2913
                     /SigmaFactorBS="gcggaattcccattgaacagaaaatttataaatgaataaaaa
                     tattaaatatacGATTGAATtaatttttattcaTGTTATAATGTTAAATAATTtcaca
                     a"
                     /listShort="argC, argJ, argB, argD, carA, carB, argF,
                     yjzC"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     CDS             1119259..1120296
                     /gene="argC"
                     /locus_tag="BSU_11190"
                     /old_locus_tag="BSU11190"
                     /EC_number="1.2.1.38"
                     /function="16.2: Construct biomass (Anabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:2117746, 3005232, 3106155, 6096674, 6096675, 8025667,
                     18455186"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 2117746, 3005232,
                     3106155, 6096674, 6096675, 8025667, 18455186; Product type
                     e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylglutamate gamma-semialdehyde
                     dehydrogenase"
                     /protein_id="NP_389001.2"
                     /db_xref="EnsemblGenomes-Gn:BSU11190"
                     /db_xref="EnsemblGenomes-Tr:CAB12960"
                     /db_xref="GOA:P23715"
                     /db_xref="InterPro:IPR000534"
                     /db_xref="InterPro:IPR000706"
                     /db_xref="InterPro:IPR012280"
                     /db_xref="InterPro:IPR023013"
                     /db_xref="InterPro:IPR036291"
                     /db_xref="SubtiList:BG10191"
                     /db_xref="UniProtKB/Swiss-Prot:P23715"
                     /translation="MKIGIVGATGYGGTELVRILSHHPHAEECILYSSSGEGNVYSEG
                     YPHLTGLADQQLKPIDMNTIKHEIDIMFLAAPPGVSSELTPKLADAGITVIDLSGDLR
                     IKEPAEYEKWYKRTAAPKAVIQEAVYGLAELNQLQIQQAKLIANPGCFPTAVLLGLAP
                     LAQKKLLDESFVIVDAKTGVSGAGRKASMGTHFSELNDNFKIYKVNEHQHTPEIEQAL
                     NEWQPGLGPITFSAHLVPMTRGIMATMYTRLTCDLTADDLHDLYSEFYQDSYFVRVRP
                     KGQYPQTKEVYGSNFCDIAVTLDERTNRVTIVSVIDNLMKGAAGQAVQNFNLMNGWNE
                     ETGLTITPIYP*"
                     /label="argC CDS"
     gene            1119259..1120296
                     /gene="argC"
                     /locus_tag="BSU_11190"
                     /old_locus_tag="BSU11190"
                     /label="argC gene"
     CDS             1120316..1121536
                     /gene="argJ"
                     /locus_tag="BSU_11200"
                     /old_locus_tag="BSU11200"
                     /EC_number="2.3.1.1"
                     /EC_number="2.3.1.35"
                     /function="16.2: Construct biomass (Anabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:8025667, 10931207, 16409639, 24163341"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 8025667, 10931207,
                     16409639, 24163341; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="ornithine acetyltransferase; amino-acid
                     acetyltransferase"
                     /protein_id="NP_389002.2"
                     /db_xref="EnsemblGenomes-Gn:BSU11200"
                     /db_xref="EnsemblGenomes-Tr:CAB12961"
                     /db_xref="GOA:P36843"
                     /db_xref="InterPro:IPR002813"
                     /db_xref="InterPro:IPR016117"
                     /db_xref="SubtiList:BG10192"
                     /db_xref="UniProtKB/Swiss-Prot:P36843"
                     /translation="MIQLSEDQIVKVTGDVSSPKGFQAKGVHCGLRYSKKDLGVIISE
                     TPAVSAAVYTQSHFQAAPIKVTQDSLKHGPTLKAVIVNSAIANACTGEQGLKDAYTMR
                     ESFASQLGIEPELVAVSSTGVIGEHLDMEKIHAGIELLKETPAGSGDFEEAILTTDTV
                     IKQTCYELAIGGKTVTIGGAAKGSGMIHPNMATMLGFVTTDAAIEEKALQKALREITD
                     VSFNQITVDGETSTNDMVLVMANGCAENECLTEDHPDWPVFKKALLLTCEDLAKEIAR
                     DGEGATKLIEAQVQGAKNNLDANVIAKKIVGSNLVKTAVYGTDANWGRIIGAIGHSAA
                     QVTAEEVEVYLGGQCLFKNNEPQPFSESIAKEYLEGDEITIVIKMAEGDGNGRAWGCD
                     LTYDYIKINASYRT*"
                     /label="argJ CDS"
     gene            1120316..1121536
                     /gene="argJ"
                     /locus_tag="BSU_11200"
                     /old_locus_tag="BSU11200"
                     /label="argJ gene"
     CDS             1121551..1122327
                     /gene="argB"
                     /locus_tag="BSU_11210"
                     /old_locus_tag="BSU11210"
                     /EC_number="2.7.2.8"
                     /experiment="publication(s) with functional evidences,
                     PMID:3005232, 8473852"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 3005232, 8473852; Product
                     type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylglutamate 5-phosphotransferase
                     (acetylglutamate kinase)"
                     /protein_id="NP_389003.1"
                     /db_xref="EnsemblGenomes-Gn:BSU11210"
                     /db_xref="EnsemblGenomes-Tr:CAB12962"
                     /db_xref="GOA:P68729"
                     /db_xref="InterPro:IPR001048"
                     /db_xref="InterPro:IPR001057"
                     /db_xref="InterPro:IPR004662"
                     /db_xref="InterPro:IPR036393"
                     /db_xref="SubtiList:BG10193"
                     /db_xref="UniProtKB/Swiss-Prot:P68729"
                     /translation="MKKTIVFKCGGSVIRELSEEFYQNLKELRASGWKLAIVHGGGPE
                     ITNMLKRLNIKTEFSGGQRKTTKPVLEVAEMVLSGSVNKFFVAELAKHGLRAAGISGK
                     DGGLLEADYLDPETYGEVGEIKKVDASMVNALMENGIIPVIAPLSMTSDCKTLNVNAD
                     LAASAVAGALEADKLMFVTDVDGIMKEKQRLDVLTPKEIQMLIKQEVITGGMIPKVNS
                     ALSALSDQVSEVMIVNGKGSFFAEQTFQGTKIVKAKEAVS*"
                     /label="argB CDS"
     gene            1121551..1122327
                     /gene="argB"
                     /locus_tag="BSU_11210"
                     /old_locus_tag="BSU11210"
                     /label="argB gene"
     CDS             1122324..1123481
                     /gene="argD"
                     /locus_tag="BSU_11220"
                     /old_locus_tag="BSU11220"
                     /EC_number="2.6.1.11"
                     /function="16.2: Construct biomass (Anabolism)"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 2a: Function from experimental evidences
                     in other organisms; PubMedId: 17012789; Product type e :
                     enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylornithine aminotransferase"
                     /protein_id="NP_389004.2"
                     /db_xref="EnsemblGenomes-Gn:BSU11220"
                     /db_xref="EnsemblGenomes-Tr:CAB12963"
                     /db_xref="GOA:P36839"
                     /db_xref="InterPro:IPR004636"
                     /db_xref="InterPro:IPR005814"
                     /db_xref="InterPro:IPR015421"
                     /db_xref="InterPro:IPR015422"
                     /db_xref="InterPro:IPR015424"
                     /db_xref="SubtiList:BG10194"
                     /db_xref="UniProtKB/Swiss-Prot:P36839"
                     /translation="MSSLFQTYGRWDIDIKKAKGTYVEDQNGKTYLDFIQGIAVSNLG
                     HCHEAVTEAVKKQLDSVWHVSNLFQNSLQEQAAQKLAAHSAGDLVFFCNSGAEANEGA
                     IKLARKATGKTKIITFLQSFHGRTYAGMAATGQDKIKTGFGPMLGGFHYLPYNDPSAF
                     KALGEEGDIAAVMLETVQGEGGVNPASAEFLSAVQSFCKEKQALLIIDEIQTGIGRTG
                     KGFAYEHFGLSPDIITVAKGLGNGFPVGAVIGKKQLGEAFTPGSHGTTFGGNMLAMAA
                     VNATLQIVFQPDFLQEAADKGAFLKEQLEAELKSPFVKQIRGKGLMLGIECDGPVADI
                     IAELQTLGLLVLPAGPNVIRLLPPLTVTKDEIAEAVSKLKQAIAHHSAVNQ*"
                     /label="argD CDS"
     gene            1122324..1123481
                     /gene="argD"
                     /locus_tag="BSU_11220"
                     /old_locus_tag="BSU11220"
                     /label="argD gene"
     CDS             1123552..1124607
                     /gene="carA"
                     /locus_tag="Delta6_BSU_11230_SNPvariant"
                     /old_locus_tag="BSU_11230"
                     /EC_number="6.3.5.5"
                     /function="16.2: Construct biomass (Anabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:216664, 230177, 1116335"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 216664, 230177, 1116335;
                     Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="arginine-specific carbamoyl-phosphate
                     synthetase(small subunit)"
                     /protein_id="NP_389005.2"
                     /db_xref="EnsemblGenomes-Gn:BSU11230"
                     /db_xref="EnsemblGenomes-Tr:CAB12964"
                     /db_xref="GOA:P36838"
                     /db_xref="InterPro:IPR002474"
                     /db_xref="InterPro:IPR006274"
                     /db_xref="InterPro:IPR017926"
                     /db_xref="InterPro:IPR029062"
                     /db_xref="InterPro:IPR035686"
                     /db_xref="InterPro:IPR036480"
                     /db_xref="SubtiList:BG10195"
                     /db_xref="UniProtKB/Swiss-Prot:P36838"
                     /modified_by="User"
                     /translation="MEGYLVLEDGTSFSGELDGHENCTGEAVFFTGMTGYQEVLTDPS
                     YKGQIIVFTYPLIGNYGINEKDFESKKPQVKAAVVYEACDHFSHYEAVYSLKEYLQKW
                     NIPLLTHVDTRAVVKKIRANGTMGATVTASKEGAEIALQPENVAEQASAQEISTFGDG
                     NKHIALIDFGYKKSIASSLVKRGCKVTVVPYQQMEAVYNIKPDGLSNGPGDPKAIQPY
                     LGKIKSIISRFPTLGICLGHQLIALAFGGNTFKLPFGHRGANHPVIDRKTKRVFMTSQ
                     NHSYVVDEQSINEEELTIRFHHVNDTSVEGLAHKKLPVMSVQFHPEAHPGPAESEWIF
                     DDYLKNVIPARREIAHA*"
                     /label="Delta6_BSU_11230_SNPvariant"
     gene            1123552..1124607
                     /gene="carA"
                     /locus_tag="Delta6_BSU_11230_SNPvariant"
                     /old_locus_tag="BSU_11230"
                     /modified_by="User"
                     /label="Delta6_BSU_11230_SNPvariant"
     Polymorphism    join(1124162,1124163)
                     /Source="geneious"
                     /ID="SNP_BsDelta6_1199938_1199943"
                     /Polymorphism_Type="Deletion"
                     /note="SNP between marked nucleotides"
                     /strain="Bacillus subtilis Delta6"
                     /Length=6
                     /Amino_Acid_Change="GIV -> G"
                     /CDS_Position=612
                     /Change="-AATTGT"
                     /Codon_Change="GGA,ATT,GTG -> GGG"
                     /Coverage="183 -> 185"
                     /locus_tag="BSU_11230"
                     /Protein_Effect="Deletion"
                     /Reference_Frequency
                     /Reference_Nucleotides="AATTGT"
                     /Variant_Nucleotides
                     /Variant_P_Value=0
                     /Variant_Raw_Frequency=174
                     /comment="Delta6_BSU_11230_SNPvariant"
                     /
                     /modified_by="User"
                     /label="Polymorphism_Delta6"
     misc_feature    complement(1124441..1124460)
                     /Source="Nicolas_upshift_promotors"
                     /id="U900"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.869130869130869"
                     /psig="0.949050949050949"
                     /xcortree=2066
                     /SigmaFactorBS="gtggaattgaacactcatgacaggcagttttttatgggcaag
                     cccttcaacTGACGTATCATTGACATGATgaaacctgatggtgagctcttcttcatta
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_single_box"
                     /note="Geneious type: promotor_single_box"
     upshifts        complement(1124451)
                     /Source="Nicolas_upshifts"
                     /id="U900"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.869130869130869"
                     /psig="0.949050949050949"
                     /xcortree=2066
                     /SigmaFactorBS="gtggaattgaacactcatgacaggcagttttttatgggcaag
                     cccttcaacTGACGTATCATTGACATGATgaaacctgatggtgagctcttcttcatta
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             1124600..1127692
                     /gene="carB"
                     /locus_tag="BSU_11240"
                     /old_locus_tag="BSU11240"
                     /EC_number="6.3.5.5"
                     /function="16.2: Construct biomass (Anabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:216664, 1116335"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 216664, 1116335; Product
                     type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="arginine-specific carbamoyl-phosphate
                     synthetase(large subunit)"
                     /protein_id="NP_389006.3"
                     /db_xref="EnsemblGenomes-Gn:BSU11240"
                     /db_xref="EnsemblGenomes-Tr:CAB12965"
                     /db_xref="GOA:P18185"
                     /db_xref="InterPro:IPR005479"
                     /db_xref="InterPro:IPR005480"
                     /db_xref="InterPro:IPR005483"
                     /db_xref="InterPro:IPR006275"
                     /db_xref="InterPro:IPR011761"
                     /db_xref="InterPro:IPR013815"
                     /db_xref="InterPro:IPR016185"
                     /db_xref="InterPro:IPR036897"
                     /db_xref="SubtiList:BG10196"
                     /db_xref="UniProtKB/Swiss-Prot:P18185"
                     /translation="MPKDTSISSILVIGSGPIIIGQAAEFDYSGTQGCIALKEEGYRV
                     ILVNSNPATIMTDEAFADEIYFEPLTAESLTAIIKKERPDGLLANLGGQTALNLAVEL
                     EETGVLKEHGVKLLGTSVETIQKGEDREKFRSLMNELKQPVPESEIVDNEADALHFAE
                     SIGFPVIIRPAYTLGGKGGGIAPDKEAFTAMIKQALLASPINQCLVEKSIAGFKEIEY
                     EVMRDSNNTCITVCNMENIDPVGVHTGDSIVVAPSQTLTDEDYQMLRTASLTIISALD
                     VVGGCNIQFALDPFSKQYYVIEVNPRVSRSSALASKATGYPIAKMAAKLAVGYTLDEL
                     KNPLTGSTYASFEPALDYVIVKFPRWPFDKFKNADRKLGTKMKATGEVMAIERNLEAA
                     IQKAAASLELKNIGTHLPELSGLSIDTLWDLAITPDDRRFFVVMELLSRSVSIDDIHE
                     KTKIDPFFLHTFDNIIKLENRLMEAGSDLSFELLKKAKEKGFSDATIASLISKTEEEV
                     RALRKEMGITPSFKIVDTCAAEFDAKTNYFYSTYFGETDGDISRKEKKRALIIGSGPI
                     RIGQGVEFDYSAVHGVLTLQELGFETIMINNNPETVSTDYEIADRLYFEPMTTEHIVN
                     VAEQENIDFAIVQFGGQTAINAAEALEKAGITLLGTSFQTLDVLEDRDQFYQLLDELG
                     LKHAKGEIAYTKEEAASKASEIGYPVLIRPSYVIGGMGMIIVDSQAQLSQLLNDEDSM
                     PYPILIDQYVSGKEVEIDLISDGEEVFIPTYTEHIERAGVHSGDSFAILPGPSITSGL
                     QQGMKDAAQKIARKLSFKGIMNIQFVIDNGNILVLEVNPRASRTVPVVSKVMGVPMIP
                     LATRLLAGASLKDLNPAVQNHHGVAVKFPVFSSHAIQDVDVKLGPEMKSTGEGMCVAY
                     DSNSALKKIYTRVWSQKGSIYLQNVPEDVKELAENAGFTIHEGTFASWMEQEGNSLHI
                     NLSGSEEARKERLEAMTHGIPVFTEEETVRAFLQSGSGHPQPVSLKDLYKKEVASCTQ
                     *"
                     /label="carB CDS"
     gene            1124600..1127692
                     /gene="carB"
                     /locus_tag="BSU_11240"
                     /old_locus_tag="BSU11240"
                     /label="carB gene"
     CDS             1127680..1128639
                     /gene="argF"
                     /locus_tag="BSU_11250"
                     /old_locus_tag="BSU11250"
                     /EC_number="2.1.3.3"
                     /function="16.2: Construct biomass (Anabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:3099126, 6409881, 8025667, 9346304, 16585758,
                     26443366"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 3099126, 6409881,
                     8025667, 9346304, 16585758, 26443366; Product type e :
                     enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="ornithine carbamoyltransferase"
                     /protein_id="NP_389007.1"
                     /db_xref="EnsemblGenomes-Gn:BSU11250"
                     /db_xref="EnsemblGenomes-Tr:CAB12966"
                     /db_xref="GOA:P18186"
                     /db_xref="InterPro:IPR002292"
                     /db_xref="InterPro:IPR006130"
                     /db_xref="InterPro:IPR006131"
                     /db_xref="InterPro:IPR006132"
                     /db_xref="InterPro:IPR024904"
                     /db_xref="InterPro:IPR036901"
                     /db_xref="SubtiList:BG10197"
                     /db_xref="UniProtKB/Swiss-Prot:P18186"
                     /translation="MHTVTQTSLYGKDLLTLKDLSEEDINALLAEAGELKQNKIQPIF
                     HGKTLAMIFEKSSTRTRVSFEAGMAQLGGSALFLSQKDLQLGRGETVADTAKVLSGYV
                     DAIMIRTFEHEKVEELAKEADIPVINGLTDKYHPCQALADLLTIKEIKGKLKGVKVAY
                     IGDGNNVAHSLMIGCAKMGCDISIASPKGYEVLDEAAEAAKTYALQSGSSVTLTDDPI
                     EAVKDADVIYSDVFTSMGQEAEEQERLAVFAPYQVNAALVSHAKPDYTFLHCLPAHRE
                     EEVTAEIIDGPNSAVFQQAENRLHVQKALLKAILYKGESSKNC*"
                     /label="argF CDS"
     gene            1127680..1128639
                     /gene="argF"
                     /locus_tag="BSU_11250"
                     /old_locus_tag="BSU11250"
                     /label="argF gene"
     downshifts      1128602
                     /Source="Nicolas_upshifts"
                     /id="D609"
                     /incds=0
                     /nref=141
                     /ntot=268
                     /MaxReadThrough="4.29547"
                     /MaxDrop="7.69347"
                     /score="22.2660758"
                     /energy="-11.1"
                     /TU="U899"
                     /idTUdmin="U899"
                     /TUdmin="-305"
                     /isTUend="FALSE"
                     /label="downshifts"
     S_feature       complement(1128642..1128916)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1204423_1204697_c"
                     /HighExp="G135, G180, Cold, LBGexp, G150, B60, LoTm,
                     Paraq, Oxctl, H2O2"
                     /AntisenseName="yjzC"
                     /AntisenseCor="-0.37122740772860502"
                     /AntisenseRegPval="-9.5"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig=1
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S399"
     promotor_-35    1128667..1128673
                     /Source="Nicolas_upshift_promotors"
                     /id="U901"
                     /multdbtbs="-"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp=1
                     /psig=1
                     /xcortree=943
                     /SigmaFactorBS="agcagtttttttgatggcAACATATtcacagccgcttagGCG
                     CATACTACAgcaaaaaggaaaaggaggaaaaacagtgggacagcagcaccaattccgg
                     c"
                     /listShort="yjzC"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     downshifts      complement(1128675)
                     /Source="Nicolas_upshifts"
                     /id="D610"
                     /incds=0
                     /nref=33
                     /ntot=166
                     /MaxReadThrough="1.19008"
                     /MaxDrop="5.22155"
                     /score="16.2777759"
                     /energy="-11.2"
                     /TU="NA"
                     /idTUdmin="U902"
                     /TUdmin=0
                     /isTUend="TRUE"
                     /label="downshifts"
     promotor_-10    1128688..1128699
                     /Source="Nicolas_upshift_promotors"
                     /id="U901"
                     /multdbtbs="-"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp=1
                     /psig=1
                     /xcortree=943
                     /SigmaFactorBS="agcagtttttttgatggcAACATATtcacagccgcttagGCG
                     CATACTACAgcaaaaaggaaaaggaggaaaaacagtgggacagcagcaccaattccgg
                     c"
                     /listShort="yjzC"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        1128709
                     /Source="Nicolas_upshifts"
                     /id="U901"
                     /multdbtbs="-"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp=1
                     /psig=1
                     /xcortree=943
                     /SigmaFactorBS="agcagtttttttgatggcAACATATtcacagccgcttagGCG
                     CATACTACAgcaaaaaggaaaaggaggaaaaacagtgggacagcagcaccaattccgg
                     c"
                     /listShort="yjzC"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             1128725..1128904
                     /gene="yjzC"
                     /locus_tag="BSU_11260"
                     /old_locus_tag="BSU11260"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms; PubMedId: 25859258"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved hypothetical protein"
                     /protein_id="NP_389008.1"
                     /db_xref="EnsemblGenomes-Gn:BSU11260"
                     /db_xref="EnsemblGenomes-Tr:CAB12967"
                     /db_xref="InterPro:IPR025549"
                     /db_xref="SubtiList:BG13223"
                     /db_xref="UniProtKB/Swiss-Prot:O34585"
                     /translation="MGQQHQFRPGQKAPNNGVYVEIGETGSMVKNPQKVHLSAGEMFP
                     ETSNHNRLWTYKRKP*"
                     /label="yjzC CDS"
     gene            1128725..1128904
                     /gene="yjzC"
                     /locus_tag="BSU_11260"
                     /old_locus_tag="BSU11260"
                     /label="yjzC gene"
     downshifts      1128914
                     /Source="Nicolas_upshifts"
                     /id="D611"
                     /incds=0
                     /nref=19
                     /ntot=53
                     /MaxReadThrough="0.25116"
                     /MaxDrop="5.67653"
                     /score="4.8153862"
                     /energy="-10.9"
                     /TU="NA"
                     /idTUdmin="U899"
                     /TUdmin=7
                     /isTUend="TRUE"
                     /label="downshifts"
     CDS             complement(1128950..1129135)
                     /gene="yjzD"
                     /locus_tag="BSU_11270"
                     /old_locus_tag="BSU11270"
                     /function="16.13: Shape"
                     /function="16.8: Protect"
                     /experiment="publication(s) with functional evidences,
                     PMID:19775244"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 19775244; Product type f:
                     factor"
                     /codon_start=1
                     /transl_table=11
                     /product="forespore targeted protein"
                     /protein_id="NP_389009.1"
                     /db_xref="EnsemblGenomes-Gn:BSU11270"
                     /db_xref="EnsemblGenomes-Tr:CAB12968"
                     /db_xref="GOA:O34713"
                     /db_xref="InterPro:IPR021324"
                     /db_xref="SubtiList:BG13224"
                     /db_xref="UniProtKB/Swiss-Prot:O34713"
                     /translation="MRYIIAFIWTFLLSHMACYLVASMNSVTYNFKTSSVIAVVLYVL
                     IMVLAEIMPMNKNASQH*"
                     /label="yjzD CDS"
     gene            complement(1128950..1129135)
                     /gene="yjzD"
                     /locus_tag="BSU_11270"
                     /old_locus_tag="BSU11270"
                     /label="yjzD gene"
     downshifts      complement(1128961)
                     /Source="Nicolas_upshifts"
                     /id="D612"
                     /incds=0
                     /nref=215
                     /ntot=261
                     /MaxReadThrough="3.91391"
                     /MaxDrop="6.26103"
                     /score="9.62656276"
                     /energy="-10.9"
                     /TU="U902"
                     /idTUdmin="U902"
                     /TUdmin="-286"
                     /isTUend="FALSE"
                     /label="downshifts"
     promotor_-10    complement(1129164..1129183)
                     /Source="Nicolas_upshift_promotors"
                     /id="U902"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.94005994005994"
                     /psig=1
                     /xcortree=3093
                     /SigmaFactorBS="atcagactcttttgtcacctcactttctgctaaaattggaTT
                     CCCCCTtcgctttttgTATGGTATGATAACTTTTAGaatagaatgagaaggacgaggt
                     g"
                     /listShort="yjzD, S399"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(1129181)
                     /Source="Nicolas_upshifts"
                     /id="U902"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.94005994005994"
                     /psig=1
                     /xcortree=3093
                     /SigmaFactorBS="atcagactcttttgtcacctcactttctgctaaaattggaTT
                     CCCCCTtcgctttttgTATGGTATGATAACTTTTAGaatagaatgagaaggacgaggt
                     g"
                     /listShort="yjzD, S399"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(1129194..1129201)
                     /Source="Nicolas_upshift_promotors"
                     /id="U902"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.94005994005994"
                     /psig=1
                     /xcortree=3093
                     /SigmaFactorBS="atcagactcttttgtcacctcactttctgctaaaattggaTT
                     CCCCCTtcgctttttgTATGGTATGATAACTTTTAGaatagaatgagaaggacgaggt
                     g"
                     /listShort="yjzD, S399"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-35    1129236..1129242
                     /Source="Nicolas_upshift_promotors"
                     /id="U903"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.972027972027972"
                     /psig=1
                     /xcortree=3055
                     /SigmaFactorBS="gaatccaattttagcagaaagtgaggtgacaaaagagTCTGA
                     TTcgtcacactttAATGGTAAAATATAAAACGTcaatcagtataatagccaaaaatgt
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    1129254..1129273
                     /Source="Nicolas_upshift_promotors"
                     /id="U903"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.972027972027972"
                     /psig=1
                     /xcortree=3055
                     /SigmaFactorBS="gaatccaattttagcagaaagtgaggtgacaaaagagTCTGA
                     TTcgtcacactttAATGGTAAAATATAAAACGTcaatcagtataatagccaaaaatgt
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        1129259
                     /Source="Nicolas_upshifts"
                     /id="U903"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.972027972027972"
                     /psig=1
                     /xcortree=3055
                     /SigmaFactorBS="gaatccaattttagcagaaagtgaggtgacaaaagagTCTGA
                     TTcgtcacactttAATGGTAAAATATAAAACGTcaatcagtataatagccaaaaatgt
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    1129316..1129325
                     /Source="Nicolas_upshift_promotors"
                     /id="U904"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp="0.956043956043956"
                     /psig="0.956043956043956"
                     /xcortree=1435
                     /SigmaFactorBS="ataaaacgtcaatcagtataatagccaaaaatgtaaaaggct
                     aggactttaCCTTATTCGTttcttttctattTACATAAGATAGCGTGAGATgaagtgt
                     g"
                     /listShort="yjaU, yjaV, med"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     upshifts        1129325
                     /Source="Nicolas_upshifts"
                     /id="U904"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp="0.956043956043956"
                     /psig="0.956043956043956"
                     /xcortree=1435
                     /SigmaFactorBS="ataaaacgtcaatcagtataatagccaaaaatgtaaaaggct
                     aggactttaCCTTATTCGTttcttttctattTACATAAGATAGCGTGAGATgaagtgt
                     g"
                     /listShort="yjaU, yjaV, med"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-10    1129338..1129357
                     /Source="Nicolas_upshift_promotors"
                     /id="U904"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp="0.956043956043956"
                     /psig="0.956043956043956"
                     /xcortree=1435
                     /SigmaFactorBS="ataaaacgtcaatcagtataatagccaaaaatgtaaaaggct
                     aggactttaCCTTATTCGTttcttttctattTACATAAGATAGCGTGAGATgaagtgt
                     g"
                     /listShort="yjaU, yjaV, med"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     CDS             1129384..1130118
                     /gene="yjaU"
                     /locus_tag="BSU_11280"
                     /old_locus_tag="BSU11280"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms; PubMedId: 18582593"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved hypothetical protein"
                     /protein_id="NP_389010.1"
                     /db_xref="EnsemblGenomes-Gn:BSU11280"
                     /db_xref="EnsemblGenomes-Tr:CAB12969"
                     /db_xref="InterPro:IPR029058"
                     /db_xref="SubtiList:BG13124"
                     /db_xref="UniProtKB/Swiss-Prot:O35001"
                     /translation="MGITERYFQLGTEHNVIHLPYRPNGFGIFILGDRTHFVGHDSSF
                     WQQHYGRNQLLSMLMNEGYTLFNSNLFGRHWGAEKAVTYAKQLIHSVLKQEILNPKIH
                     ILAEGMGALVADELLRFSPDHIRSAAMLNPCLDLQAHYESEKENKFFYKQFLKEVSKS
                     YGISEKEAEAIRYKTIQSYPSGVPVHIWQRMTGAPYPYSVHAEVFKEKQQKQGSPVDM
                     TFHLFEHPSRIYASICKFFHSHEKEL*"
                     /label="yjaU CDS"
     gene            1129384..1130118
                     /gene="yjaU"
                     /locus_tag="BSU_11280"
                     /old_locus_tag="BSU11280"
                     /label="yjaU gene"
     S_feature       complement(1129877..1130479)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1205658_1206260_c"
                     /HighExp="S8, S6, S7, C30, BT, S4, S5, Pyr, S3, C90"
                     /AntisenseName="yjaV"
                     /AntisenseCor="0.66207512383157796"
                     /AntisenseRegPval="-34.6"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="Sig-"
                     /TUshortPSig="0.468"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S400"
     promotor_-35    1130099..1130104
                     /Source="Nicolas_upshift_promotors"
                     /id="U905"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp=1
                     /psig=1
                     /xcortree=1036
                     /SigmaFactorBS="atccaagcagaatttatgcatcaatttgcaaattctttcata
                     GTCATGaaaaagaattatagaGAATATAATGACAACAGCCttctcttttgcggaggct
                     g"
                     /listShort="yjaV, med, comZ"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     downshifts      1130117
                     /Source="Nicolas_upshifts"
                     /id="D613"
                     /incds=0
                     /nref=6
                     /ntot=47
                     /MaxReadThrough="5.56163"
                     /MaxDrop="4.5381"
                     /score="1.90624641"
                     /energy="-10"
                     /TU="U904,U905"
                     /idTUdmin="U904"
                     /TUdmin="-945"
                     /isTUend="FALSE"
                     /label="downshifts"
     upshifts        1130117
                     /Source="Nicolas_upshifts"
                     /id="U905"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp=1
                     /psig=1
                     /xcortree=1036
                     /SigmaFactorBS="atccaagcagaatttatgcatcaatttgcaaattctttcata
                     GTCATGaaaaagaattatagaGAATATAATGACAACAGCCttctcttttgcggaggct
                     g"
                     /listShort="yjaV, med, comZ"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-10    1130120..1130138
                     /Source="Nicolas_upshift_promotors"
                     /id="U905"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp=1
                     /psig=1
                     /xcortree=1036
                     /SigmaFactorBS="atccaagcagaatttatgcatcaatttgcaaattctttcata
                     GTCATGaaaaagaattatagaGAATATAATGACAACAGCCttctcttttgcggaggct
                     g"
                     /listShort="yjaV, med, comZ"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     CDS             1130200..1130757
                     /gene="yjaV"
                     /locus_tag="BSU_11290"
                     /old_locus_tag="BSU11290"
                     /function="16.5: Explore"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 14523133; Product type
                     e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative NAD(P) binding enzyme"
                     /protein_id="NP_389011.2"
                     /db_xref="EnsemblGenomes-Gn:BSU11290"
                     /db_xref="EnsemblGenomes-Tr:CAB12970"
                     /db_xref="SubtiList:BG13125"
                     /db_xref="UniProtKB/Swiss-Prot:O34959"
                     /translation="MESTLIVGADEFFGLSLCERMMDEGIHVDVVLAETEDKMRQMYL
                     EERLMWLGRNELFRQLEHIGDQNYDTICIQFGSFLPLDQYDSPYILVYEEDRKEWDKR
                     EKTGSEKTVILPKMYGPWKEETEEDGYYTNDVADELLRFLLEPSRHSKDQLFELQVTE
                     KTSKEEAKTKIIEWKRQFSSIFDKY*"
                     /label="yjaV CDS"
     gene            1130200..1130757
                     /gene="yjaV"
                     /locus_tag="BSU_11290"
                     /old_locus_tag="BSU11290"
                     /label="yjaV gene"
     promotor_-10    complement(1130459..1130478)
                     /Source="Nicolas_upshift_promotors"
                     /id="U906"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="Sig-"
                     /pcomp="0.467532467532468"
                     /psig="0.467532467532468"
                     /xcortree=771
                     /SigmaFactorBS="gcaggatcacggttttttccgagcctgttttttcacgtttat
                     CCCATtcttttcggtcttcTTCATATACTAAAATATAAGgagaatcatattggtctaa
                     a"
                     /listShort="S400"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(1130479)
                     /Source="Nicolas_upshifts"
                     /id="U906"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="Sig-"
                     /pcomp="0.467532467532468"
                     /psig="0.467532467532468"
                     /xcortree=771
                     /SigmaFactorBS="gcaggatcacggttttttccgagcctgttttttcacgtttat
                     CCCATtcttttcggtcttcTTCATATACTAAAATATAAGgagaatcatattggtctaa
                     a"
                     /listShort="S400"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(1130493..1130497)
                     /Source="Nicolas_upshift_promotors"
                     /id="U906"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="Sig-"
                     /pcomp="0.467532467532468"
                     /psig="0.467532467532468"
                     /xcortree=771
                     /SigmaFactorBS="gcaggatcacggttttttccgagcctgttttttcacgtttat
                     CCCATtcttttcggtcttcTTCATATACTAAAATATAAGgagaatcatattggtctaa
                     a"
                     /listShort="S400"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-35    1130764..1130771
                     /Source="Nicolas_upshift_promotors"
                     /id="U907"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.689310689310689"
                     /psig=1
                     /xcortree=2121
                     /SigmaFactorBS="caattttcgacaaatattaagaaaaaCCTTCCATgtttcgag
                     ttttctAGATACAATAAACGTATAAAaataatacatgttatagcttgtcaaaaggagt
                     t"
                     /listShort="med, comZ, S401"
                     /listLong="fabHA, fabF"
                     /label="promotor_-35"
     promotor_-10    1130786..1130805
                     /Source="Nicolas_upshift_promotors"
                     /id="U907"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.689310689310689"
                     /psig=1
                     /xcortree=2121
                     /SigmaFactorBS="caattttcgacaaatattaagaaaaaCCTTCCATgtttcgag
                     ttttctAGATACAATAAACGTATAAAaataatacatgttatagcttgtcaaaaggagt
                     t"
                     /listShort="med, comZ, S401"
                     /listLong="fabHA, fabF"
                     /label="promotor_-10"
     upshifts        1130798
                     /Source="Nicolas_upshifts"
                     /id="U907"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.689310689310689"
                     /psig=1
                     /xcortree=2121
                     /SigmaFactorBS="caattttcgacaaatattaagaaaaaCCTTCCATgtttcgag
                     ttttctAGATACAATAAACGTATAAAaataatacatgttatagcttgtcaaaaggagt
                     t"
                     /listShort="med, comZ, S401"
                     /listLong="fabHA, fabF"
                     /label="upshifts"
     CDS             1130848..1131801
                     /gene="med"
                     /locus_tag="BSU_11300"
                     /old_locus_tag="BSU11300"
                     /function="16.3: Control"
                     /experiment="publication(s) with functional evidences,
                     PMID:1203607, 21622736, 22720735"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 1203607, 21622736,
                     22720735; Product type lp: lipoprotein"
                     /codon_start=1
                     /transl_table=11
                     /product="positive regulator of comK"
                     /protein_id="NP_389012.2"
                     /db_xref="EnsemblGenomes-Gn:BSU11300"
                     /db_xref="EnsemblGenomes-Tr:CAB12971"
                     /db_xref="GOA:O32436"
                     /db_xref="InterPro:IPR003760"
                     /db_xref="InterPro:IPR028082"
                     /db_xref="SubtiList:BG13126"
                     /db_xref="UniProtKB/Swiss-Prot:O32436"
                     /translation="MITRLVMIFSVLLLLSGCGQTPFKGKIEKVGMLFPDTINDLVWG
                     TKGYKGLLNIQSKYNVDVYYKEGVKTEEDIINAIEDFHKRGVNLLYGHGSEYAEVFNL
                     VGEDYPDMEFVISNAKAKADNVTSVHFSGEAMGFFGGMTAAHMSKTNQVGVIASFTWQ
                     PEVDGFIKGAKYENPDIEVNTKYTDHWDDDTTAVKLYQKMKNEGADVVYPAGDGYNVP
                     VIQQIKKDGLYAIGYVTDQSDLGENTVLTSTVQNVDKAYEIIAEQFNKGTLEGGDHYY
                     DLNTGVVEMGTFSPLVDQDFQQRIAKLIKTYNKTGELPKNE*"
                     /label="med CDS"
     gene            1130848..1131801
                     /gene="med"
                     /locus_tag="BSU_11300"
                     /old_locus_tag="BSU11300"
                     /label="med gene"
     promotor_-35    1131465..1131469
                     /Source="Nicolas_upshift_promotors"
                     /id="U908"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.924075924075924"
                     /psig=1
                     /xcortree=1825
                     /SigmaFactorBS="tcagaaaatgaagaacgaaggcgcggaTGTTGtgtatcccgc
                     cggagACGGGTATAATGTTCCTGTTattcagcaaatcaaaaaagacggtctttatgcc
                     a"
                     /listShort="comZ, S401"
                     /listLong="fabHA, fabF"
                     /label="promotor_-35"
     promotor_-10    1131485..1131504
                     /Source="Nicolas_upshift_promotors"
                     /id="U908"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.924075924075924"
                     /psig=1
                     /xcortree=1825
                     /SigmaFactorBS="tcagaaaatgaagaacgaaggcgcggaTGTTGtgtatcccgc
                     cggagACGGGTATAATGTTCCTGTTattcagcaaatcaaaaaagacggtctttatgcc
                     a"
                     /listShort="comZ, S401"
                     /listLong="fabHA, fabF"
                     /label="promotor_-10"
     upshifts        1131498
                     /Source="Nicolas_upshifts"
                     /id="U908"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.924075924075924"
                     /psig=1
                     /xcortree=1825
                     /SigmaFactorBS="tcagaaaatgaagaacgaaggcgcggaTGTTGtgtatcccgc
                     cggagACGGGTATAATGTTCCTGTTattcagcaaatcaaaaaagacggtctttatgcc
                     a"
                     /listShort="comZ, S401"
                     /listLong="fabHA, fabF"
                     /label="upshifts"
     CDS             1131816..1132007
                     /gene="comZ"
                     /locus_tag="BSU_11310"
                     /old_locus_tag="BSU11310"
                     /function="16.5: Explore"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 10940045; Product type
                     f: factor"
                     /codon_start=1
                     /transl_table=11
                     /product="putative late competence gene"
                     /protein_id="NP_389013.1"
                     /db_xref="EnsemblGenomes-Gn:BSU11310"
                     /db_xref="EnsemblGenomes-Tr:CAB12972"
                     /db_xref="GOA:O32437"
                     /db_xref="InterPro:IPR024558"
                     /db_xref="SubtiList:BG13221"
                     /db_xref="UniProtKB/Swiss-Prot:O32437"
                     /translation="MQHEKSLEFLQIAMKYLPEAKEQLEKSGIELSMEAIQPFMNLFT
                     TVMAEAYELGKSDAKSETE*"
                     /label="comZ CDS"
     gene            1131816..1132007
                     /gene="comZ"
                     /locus_tag="BSU_11310"
                     /old_locus_tag="BSU11310"
                     /label="comZ gene"
     downshifts      1131986
                     /Source="Nicolas_upshifts"
                     /id="D614"
                     /incds=0
                     /nref=32
                     /ntot=192
                     /MaxReadThrough="4.56858"
                     /MaxDrop="3.45953"
                     /score="-7.49795364"
                     /energy="-10.4"
                     /TU="U907,U908"
                     /idTUdmin="U905"
                     /TUdmin=0
                     /isTUend="TRUE"
                     /label="downshifts"
     S_feature       1132031..1132371
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1207812_1208152"
                     /HighExp="H2O2, C30, G135, Paraq, G180, G150, Oxctl, Cold,
                     dia15, LPh"
                     /AntisenseName="yjzB"
                     /AntisenseCor="-0.34349942363230701"
                     /AntisenseRegPval="-8.1"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA, SigA"
                     /TUshortPSig="1, 1"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S401"
     CDS             complement(1132037..1132276)
                     /gene="yjzB"
                     /locus_tag="BSU_11320"
                     /old_locus_tag="BSU11320"
                     /experiment="publication(s) with functional evidences,
                     PMID:16391061, 22171814, 27227299"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 16391061, 22171814,
                     27227299; Product type cp: cell process"
                     /codon_start=1
                     /transl_table=11
                     /product="spore coat protein"
                     /protein_id="NP_389014.1"
                     /db_xref="EnsemblGenomes-Gn:BSU11320"
                     /db_xref="EnsemblGenomes-Tr:CAB12973"
                     /db_xref="SubtiList:BG13222"
                     /db_xref="UniProtKB/Swiss-Prot:O34891"
                     /translation="MQLDVFSRMMFGDAAKPTEEKEEEQQEEVSQVSQTNDEETINYM
                     HIMDQIGSIMNSLDQIKPALKELAPMLSAIKKKIM*"
                     /label="yjzB CDS"
     gene            complement(1132037..1132276)
                     /gene="yjzB"
                     /locus_tag="BSU_11320"
                     /old_locus_tag="BSU11320"
                     /label="yjzB gene"
     downshifts      complement(1132053)
                     /Source="Nicolas_upshifts"
                     /id="D615"
                     /incds=0
                     /nref=21
                     /ntot=48
                     /MaxReadThrough="1.43519"
                     /MaxDrop="5.47891"
                     /score="-7.75082002"
                     /energy="-10.4"
                     /TU="NA"
                     /idTUdmin="U909"
                     /TUdmin="-13"
                     /isTUend="TRUE"
                     /label="downshifts"
     promotor_-10    complement(1132289..1132308)
                     /Source="Nicolas_upshift_promotors"
                     /id="U909"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp="0.997002997002997"
                     /psig="0.997002997002997"
                     /xcortree=1358
                     /SigmaFactorBS="ctaattctatcctattttttttcacatggcaatatattcGTC
                     TAAACTAtcagttcatcttaCTCATAGAGTATGGTATATGgaaaggaggcgtatgcag
                     t"
                     /listShort="yjzB"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(1132310)
                     /Source="Nicolas_upshifts"
                     /id="U909"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp="0.997002997002997"
                     /psig="0.997002997002997"
                     /xcortree=1358
                     /SigmaFactorBS="ctaattctatcctattttttttcacatggcaatatattcGTC
                     TAAACTAtcagttcatcttaCTCATAGAGTATGGTATATGgaaaggaggcgtatgcag
                     t"
                     /listShort="yjzB"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(1132322..1132331)
                     /Source="Nicolas_upshift_promotors"
                     /id="U909"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp="0.997002997002997"
                     /psig="0.997002997002997"
                     /xcortree=1358
                     /SigmaFactorBS="ctaattctatcctattttttttcacatggcaatatattcGTC
                     TAAACTAtcagttcatcttaCTCATAGAGTATGGTATATGgaaaggaggcgtatgcag
                     t"
                     /listShort="yjzB"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-35    1132337..1132344
                     /Source="Nicolas_upshift_promotors"
                     /id="U910"
                     /multdbtbs="SigA"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.858141858141858"
                     /psig=1
                     /xcortree=2188
                     /SigmaFactorBS="atgaactgatagtttagacgaataTATTGCCAtgtgaaaaaa
                     aataGGATAGAATTAGTACCTGATactaataattgatcacaacctgattgatcttcta
                     a"
                     /listShort="fabHA, fabF"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    1132359..1132378
                     /Source="Nicolas_upshift_promotors"
                     /id="U910"
                     /multdbtbs="SigA"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.858141858141858"
                     /psig=1
                     /xcortree=2188
                     /SigmaFactorBS="atgaactgatagtttagacgaataTATTGCCAtgtgaaaaaa
                     aataGGATAGAATTAGTACCTGATactaataattgatcacaacctgattgatcttcta
                     a"
                     /listShort="fabHA, fabF"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        1132373
                     /Source="Nicolas_upshifts"
                     /id="U910"
                     /multdbtbs="SigA"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.858141858141858"
                     /psig=1
                     /xcortree=2188
                     /SigmaFactorBS="atgaactgatagtttagacgaataTATTGCCAtgtgaaaaaa
                     aataGGATAGAATTAGTACCTGATactaataattgatcacaacctgattgatcttcta
                     a"
                     /listShort="fabHA, fabF"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             1132441..1133379
                     /gene="fabHA"
                     /locus_tag="BSU_11330"
                     /old_locus_tag="BSU11330"
                     /EC_number="2.3.1.180"
                     /EC_number="2.3.1.38"
                     /function="16.2: Construct biomass (Anabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:10629181, 11959561, 21542858, 25196128"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 10629181, 11959561,
                     21542858, 25196128; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="beta-ketoacyl-acyl carrier protein synthase III
                     1"
                     /protein_id="NP_389015.1"
                     /db_xref="EnsemblGenomes-Gn:BSU11330"
                     /db_xref="EnsemblGenomes-Tr:CAB12974"
                     /db_xref="GOA:O34746"
                     /db_xref="InterPro:IPR004655"
                     /db_xref="InterPro:IPR013747"
                     /db_xref="InterPro:IPR013751"
                     /db_xref="InterPro:IPR016039"
                     /db_xref="SubtiList:BG13127"
                     /db_xref="UniProtKB/Swiss-Prot:O34746"
                     /translation="MKAGILGVGRYIPEKVLTNHDLEKMVETSDEWIRTRTGIEERRI
                     AADDVFSSHMAVAAAKNALEQAEVAAEDLDMILVATVTPDQSFPTVSCMIQEQLGAKK
                     ACAMDISAACAGFMYGVVTGKQFIESGTYKHVLVVGVEKLSSITDWEDRNTAVLFGDG
                     AGAAVVGPVSDDRGILSFELGADGTGGQHLYLNEKRHTIMNGREVFKFAVRQMGESCV
                     NVIEKAGLSKEDVDFLIPHQANIRIMEAARERLELPVEKMSKTVHKYGNTSAASIPIS
                     LVEELEAGKIKDGDVVVMVGFGGGLTWGAIAIRWGR*"
                     /label="fabHA CDS"
     gene            1132441..1133379
                     /gene="fabHA"
                     /locus_tag="BSU_11330"
                     /old_locus_tag="BSU11330"
                     /label="fabHA gene"
     promotor_-35    1132518..1132527
                     /Source="Nicolas_upshift_promotors"
                     /id="U911"
                     /multdbtbs="-"
                     /comp="M9"
                     /sig="SigWXY"
                     /pcomp="0.978021978021978"
                     /psig="0.978021978021978"
                     /xcortree=1791
                     /SigmaFactorBS="tcctgagaaggttttaacaaatcatgatcttgaaaaaatggt
                     TGAAACTTCTgacgagtggatTCGTACAAGAACAGGAatagaagaaagaagaatcgca
                     g"
                     /listShort="fabF"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     upshifts        1132536
                     /Source="Nicolas_upshifts"
                     /id="U911"
                     /multdbtbs="-"
                     /comp="M9"
                     /sig="SigWXY"
                     /pcomp="0.978021978021978"
                     /psig="0.978021978021978"
                     /xcortree=1791
                     /SigmaFactorBS="tcctgagaaggttttaacaaatcatgatcttgaaaaaatggt
                     TGAAACTTCTgacgagtggatTCGTACAAGAACAGGAatagaagaaagaagaatcgca
                     g"
                     /listShort="fabF"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-10    1132539..1132554
                     /Source="Nicolas_upshift_promotors"
                     /id="U911"
                     /multdbtbs="-"
                     /comp="M9"
                     /sig="SigWXY"
                     /pcomp="0.978021978021978"
                     /psig="0.978021978021978"
                     /xcortree=1791
                     /SigmaFactorBS="tcctgagaaggttttaacaaatcatgatcttgaaaaaatggt
                     TGAAACTTCTgacgagtggatTCGTACAAGAACAGGAatagaagaaagaagaatcgca
                     g"
                     /listShort="fabF"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     CDS             1133402..1134643
                     /gene="fabF"
                     /locus_tag="BSU_11340"
                     /old_locus_tag="BSU11340"
                     /EC_number="2.3.1.41"
                     /function="16.2: Construct biomass (Anabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:11325930, 12682299, 16436705, 18384517, 21542858,
                     28196402"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 11325930, 12682299,
                     16436705, 18384517, 21542858, 28196402; Product type e :
                     enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="beta-ketoacyl-acyl carrier protein synthase II
                     (involved in pimelate synthesis)"
                     /protein_id="NP_389016.1"
                     /db_xref="EnsemblGenomes-Gn:BSU11340"
                     /db_xref="EnsemblGenomes-Tr:CAB12975"
                     /db_xref="GOA:O34340"
                     /db_xref="InterPro:IPR014030"
                     /db_xref="InterPro:IPR014031"
                     /db_xref="InterPro:IPR016039"
                     /db_xref="InterPro:IPR017568"
                     /db_xref="InterPro:IPR018201"
                     /db_xref="InterPro:IPR020841"
                     /db_xref="PDB:4LS5"
                     /db_xref="PDB:4LS6"
                     /db_xref="PDB:4LS7"
                     /db_xref="PDB:4LS8"
                     /db_xref="SubtiList:BG13128"
                     /db_xref="UniProtKB/Swiss-Prot:O34340"
                     /translation="MTKKRVVVTGLGALSPLGNDVDTSWNNAINGVSGIGPITRVDAE
                     EYPAKVAAELKDFNVEDYMDKKEARKMDRFTQYAVVAAKMAVEDADLNITDEIAPRVG
                     VWVGSGIGGLETLESQFEIFLTKGPRRVSPFFVPMMIPDMATGQISIALGAKGVNSCT
                     VTACATGTNSIGDAFKVIQRGDADVMVTGGTEAPLTRMSFAGFSANKALSTNPDPKTA
                     SRPFDKNRDGFVMGEGAGIIVLEELEHALARGAKIYGEIVGYGSTGDAYHITAPAQDG
                     EGGARAMQEAIKDAGIAPEEIDYINAHGTSTYYNDKYETMAIKTVFGEHAHKLAVSST
                     KSMTGHLLGAAGGIEAIFSILAIKEGVIPPTINIQTPDEECDLDYVPDEARRQELNYV
                     LSNSLGFGGHNATLIFKKYQS*"
                     /label="fabF CDS"
     gene            1133402..1134643
                     /gene="fabF"
                     /locus_tag="BSU_11340"
                     /old_locus_tag="BSU11340"
                     /label="fabF gene"
     promotor_-10    complement(1133616..1133634)
                     /Source="Nicolas_upshift_promotors"
                     /id="U912"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.813186813186813"
                     /psig="0.813186813186813"
                     /xcortree=777
                     /SigmaFactorBS="cggtaatgttaagatctgcatcttcaaccGCCATTttcgcag
                     ccacaaccGCATATTGTGTAAAGCGGTccatttttctggcttcttttttatccatata
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(1133624)
                     /Source="Nicolas_upshifts"
                     /id="U912"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.813186813186813"
                     /psig="0.813186813186813"
                     /xcortree=777
                     /SigmaFactorBS="cggtaatgttaagatctgcatcttcaaccGCCATTttcgcag
                     ccacaaccGCATATTGTGTAAAGCGGTccatttttctggcttcttttttatccatata
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(1133650..1133655)
                     /Source="Nicolas_upshift_promotors"
                     /id="U912"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.813186813186813"
                     /psig="0.813186813186813"
                     /xcortree=777
                     /SigmaFactorBS="cggtaatgttaagatctgcatcttcaaccGCCATTttcgcag
                     ccacaaccGCATATTGTGTAAAGCGGTccatttttctggcttcttttttatccatata
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     downshifts      1134494
                     /Source="Nicolas_upshifts"
                     /id="D616"
                     /incds=1
                     /nref=1
                     /ntot=89
                     /MaxReadThrough="7.03006"
                     /MaxDrop="2.1101"
                     /score="54.6350161"
                     /energy="-18.5"
                     /TU="U910,U911"
                     /idTUdmin="U911"
                     /TUdmin="-132"
                     /isTUend="FALSE"
                     /label="downshifts"
     downshifts      1134627
                     /Source="Nicolas_upshifts"
                     /id="D617"
                     /incds=0
                     /nref=246
                     /ntot=274
                     /MaxReadThrough="0.58964"
                     /MaxDrop="7.80446"
                     /score="54.6350161"
                     /energy="-18.5"
                     /TU="NA"
                     /idTUdmin="U911"
                     /TUdmin=1
                     /isTUend="TRUE"
                     /label="downshifts"
     promotor_-35    1134668..1134677
                     /Source="Nicolas_upshift_promotors"
                     /id="U913"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp=1
                     /psig=1
                     /xcortree=1338
                     /SigmaFactorBS="tatcaatcataatcaagccaaaccggctgcccttaaAGGGTA
                     GCCGgttttttttgtgTGCATAGGATTAAAAGAGGAggcgatcacatgagtgtagaac
                     a"
                     /listShort="yjaZ, S402, S403, appD, appF"
                     /listLong="S404, appA, appA, appB, appC"
                     /label="promotor_-35"
     promotor_-10    1134690..1134709
                     /Source="Nicolas_upshift_promotors"
                     /id="U913"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp=1
                     /psig=1
                     /xcortree=1338
                     /SigmaFactorBS="tatcaatcataatcaagccaaaccggctgcccttaaAGGGTA
                     GCCGgttttttttgtgTGCATAGGATTAAAAGAGGAggcgatcacatgagtgtagaac
                     a"
                     /listShort="yjaZ, S402, S403, appD, appF"
                     /listLong="S404, appA, appA, appB, appC"
                     /label="promotor_-10"
     upshifts        1134692
                     /Source="Nicolas_upshifts"
                     /id="U913"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp=1
                     /psig=1
                     /xcortree=1338
                     /SigmaFactorBS="tatcaatcataatcaagccaaaccggctgcccttaaAGGGTA
                     GCCGgttttttttgtgTGCATAGGATTAAAAGAGGAggcgatcacatgagtgtagaac
                     a"
                     /listShort="yjaZ, S402, S403, appD, appF"
                     /listLong="S404, appA, appA, appB, appC"
                     /label="upshifts"
     promotor_-35    1134704..1134712
                     /Source="Nicolas_upshift_promotors"
                     /id="U914"
                     /multdbtbs="-"
                     /comp="M1"
                     /sig="SigH"
                     /pcomp="0.998001998001998"
                     /psig="0.998001998001998"
                     /xcortree=544
                     /SigmaFactorBS="cggttttttttgtgtgcataggattaaaAGAGGAGGCgatca
                     catgagTGTAGAACAAACATATAGCtggctcaggaaggccggttcaatagatgatttg
                     g"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             1134719..1135504
                     /gene="yjaZ"
                     /locus_tag="BSU_11350"
                     /old_locus_tag="BSU11350"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved hypothetical protein"
                     /protein_id="NP_389017.1"
                     /db_xref="EnsemblGenomes-Gn:BSU11350"
                     /db_xref="EnsemblGenomes-Tr:CAB12992"
                     /db_xref="InterPro:IPR018728"
                     /db_xref="SubtiList:BG13129"
                     /db_xref="UniProtKB/Swiss-Prot:O31596"
                     /translation="MSVEQTYSWLRKAGSIDDLAHYIIPLFSGAEKKNWKGILGHLQH
                     HGMFKNIKEGIQTVSKLKEKGFYGHIQKEEQYLKNKWQGPDVPIVTLPVDERNRRIRL
                     EFGSKSGLAFQDKMFLFLSSDLDFGSVSALMTHEYHHVCRLGHLTKEEKDVTLLDTII
                     MEGLAEYAVYERFGRSQTAEWTTWYTPEQLQALYEKKIAPHRDIKRDNRLFPQLLFGK
                     GYQPKMLGYAVGFNIVKKYLTASKASTADGLSIPAETFLDAML*"
                     /label="yjaZ CDS"
     gene            1134719..1135504
                     /gene="yjaZ"
                     /locus_tag="BSU_11350"
                     /old_locus_tag="BSU11350"
                     /label="yjaZ gene"
     promotor_-10    1134724..1134742
                     /Source="Nicolas_upshift_promotors"
                     /id="U914"
                     /multdbtbs="-"
                     /comp="M1"
                     /sig="SigH"
                     /pcomp="0.998001998001998"
                     /psig="0.998001998001998"
                     /xcortree=544
                     /SigmaFactorBS="cggttttttttgtgtgcataggattaaaAGAGGAGGCgatca
                     catgagTGTAGAACAAACATATAGCtggctcaggaaggccggttcaatagatgatttg
                     g"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        1134736
                     /Source="Nicolas_upshifts"
                     /id="U914"
                     /multdbtbs="-"
                     /comp="M1"
                     /sig="SigH"
                     /pcomp="0.998001998001998"
                     /psig="0.998001998001998"
                     /xcortree=544
                     /SigmaFactorBS="cggttttttttgtgtgcataggattaaaAGAGGAGGCgatca
                     catgagTGTAGAACAAACATATAGCtggctcaggaaggccggttcaatagatgatttg
                     g"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     S_feature       1135505..1135589
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1211286_1211370"
                     /HighExp="S6, S5, S8, S7, BT, S4, S3, B36, T5.0H, T4.0H"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigK"
                     /TUshortPSig=1
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S402"
     promotor_-10    complement(1135521..1135539)
                     /Source="Nicolas_upshift_promotors"
                     /id="U915"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.838161838161838"
                     /psig="0.838161838161838"
                     /xcortree=1001
                     /SigmaFactorBS="tttatagttgtatattattacaatcattttgcaaaatcaAGA
                     ATTttttaggataaatgTAATATTATTAATGAAATTccattattttatccttttaaag
                     c"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(1135538)
                     /Source="Nicolas_upshifts"
                     /id="U915"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.838161838161838"
                     /psig="0.838161838161838"
                     /xcortree=1001
                     /SigmaFactorBS="tttatagttgtatattattacaatcattttgcaaaatcaAGA
                     ATTttttaggataaatgTAATATTATTAATGAAATTccattattttatccttttaaag
                     c"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(1135554..1135559)
                     /Source="Nicolas_upshift_promotors"
                     /id="U915"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.838161838161838"
                     /psig="0.838161838161838"
                     /xcortree=1001
                     /SigmaFactorBS="tttatagttgtatattattacaatcattttgcaaaatcaAGA
                     ATTttttaggataaatgTAATATTATTAATGAAATTccattattttatccttttaaag
                     c"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-35    1135557..1135564
                     /Source="Nicolas_upshift_promotors"
                     /id="U916"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.98001998001998"
                     /psig="0.999000999001"
                     /xcortree=2876
                     /SigmaFactorBS="ataatattacatttatcctaaaaaatTCTTGATTttgcaaaa
                     tgattgTAATAATATACAACTATAAAatttttcgataattcaatattatttattattt
                     c"
                     /listShort="S403, appD, appF, S404, appA, appA, appB,
                     appC, S405, yjbA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    1135579..1135598
                     /Source="Nicolas_upshift_promotors"
                     /id="U916"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.98001998001998"
                     /psig="0.999000999001"
                     /xcortree=2876
                     /SigmaFactorBS="ataatattacatttatcctaaaaaatTCTTGATTttgcaaaa
                     tgattgTAATAATATACAACTATAAAatttttcgataattcaatattatttattattt
                     c"
                     /listShort="S403, appD, appF, S404, appA, appA, appB,
                     appC, S405, yjbA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     S_feature       1135591..1135695
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1211372_1211476"
                     /HighExp="LoTm, T4.0H, T3.0H, T5.0H, T3.30H, T2.30H,
                     M9-stat, S1, T2.0H, T1.30H"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA, SigK"
                     /TUshortPSig="0.999, 1"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S403"
     upshifts        1135591
                     /Source="Nicolas_upshifts"
                     /id="U916"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.98001998001998"
                     /psig="0.999000999001"
                     /xcortree=2876
                     /SigmaFactorBS="ataatattacatttatcctaaaaaatTCTTGATTttgcaaaa
                     tgattgTAATAATATACAACTATAAAatttttcgataattcaatattatttattattt
                     c"
                     /listShort="S403, appD, appF, S404, appA, appA, appB,
                     appC, S405, yjbA"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             1135696..1136682
                     /gene="appD"
                     /locus_tag="BSU_11360"
                     /old_locus_tag="BSU11360"
                     /EC_number="3.6.3.-"
                     /function="16.1: Circulate"
                     /experiment="publication(s) with functional evidences,
                     PMID:7997159, 25755103, 26728191"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 7997159, 25755103,
                     26728191; Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="oligopeptide ABC transporter (ATP-binding
                     protein)"
                     /protein_id="NP_389018.1"
                     /db_xref="EnsemblGenomes-Gn:BSU11360"
                     /db_xref="EnsemblGenomes-Tr:CAB12993"
                     /db_xref="GOA:P42064"
                     /db_xref="InterPro:IPR003439"
                     /db_xref="InterPro:IPR003593"
                     /db_xref="InterPro:IPR013563"
                     /db_xref="InterPro:IPR017871"
                     /db_xref="InterPro:IPR027417"
                     /db_xref="SubtiList:BG11085"
                     /db_xref="UniProtKB/Swiss-Prot:P42064"
                     /translation="MSTLLEVNNLKTYFFRKKEPIPAVDGVDFHISKGETVALVGESG
                     SGKSITSLSIMGLVQSSGGKIMDGSIKLEDKDLTSFTENDYCKIRGNEVSMIFQEPMT
                     SLNPVLTIGEQITEVLIYHKNMKKKEARQRAVELLQMVGFSRAEQIMKEYPHRLSGGM
                     RQRVMIAIALSCNPKLLIADEPTTALDVTIQAQVLELMKDLCQKFNTSILLITHDLGV
                     VSEAADRVIVMYCGQVVENATVDDLFLEPLHPYTEGLLTSIPVIDGEIDKLNAIKGSV
                     PTPDNLPPGCRFAPRCPKAMDKCWTNQPSLLTHKSGRTVRCFLYEEEGAEQS*"
                     /label="appD CDS"
     gene            1135696..1136682
                     /gene="appD"
                     /locus_tag="BSU_11360"
                     /old_locus_tag="BSU11360"
                     /label="appD gene"
     CDS             1136679..1137668
                     /gene="appF"
                     /locus_tag="BSU_11370"
                     /old_locus_tag="BSU11370"
                     /EC_number="3.6.3.-"
                     /function="16.1: Circulate"
                     /experiment="publication(s) with functional evidences,
                     PMID:7997159, 25755103, 26728191, 22720735"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 7997159, 25755103,
                     26728191, 22720735; Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="oligopeptide ABC transporter (ATP-binding
                     protein)"
                     /protein_id="NP_389019.2"
                     /db_xref="EnsemblGenomes-Gn:BSU11370"
                     /db_xref="EnsemblGenomes-Tr:CAB12994"
                     /db_xref="GOA:P42065"
                     /db_xref="InterPro:IPR003439"
                     /db_xref="InterPro:IPR003593"
                     /db_xref="InterPro:IPR013563"
                     /db_xref="InterPro:IPR017871"
                     /db_xref="InterPro:IPR027417"
                     /db_xref="SubtiList:BG11086"
                     /db_xref="UniProtKB/Swiss-Prot:P42065"
                     /translation="MTAANQETILELRDVKKYFPIRSGLFQRKVGDVKAVDGVSFSLK
                     KGETLGIVGESGCGKSTAGRTMIRLYKPTEGQILFKGQDISNLSEEKLRKSVRKNIQM
                     VFQDPFASLNPRKTLRSIIKEPFNTHNMYTMRERNEKVEELLARVGLHPSFAGRYPHE
                     FSGGQRQRIGIARALTLNPELIIADEPVSALDVSIQAQVINLMEELQEEFNLTYLFIS
                     HDLSVVRHISDRVGVMYLGKMMELTGKHELYDNPLHPYTQALLSSVPVTRKRGSVKRE
                     RIVLKGELPSPANPPKGCVFHTRCPVAKPICKEQIPEFKEAAPSHFVACHLYS*"
                     /label="appF CDS"
     gene            1136679..1137668
                     /gene="appF"
                     /locus_tag="BSU_11370"
                     /old_locus_tag="BSU11370"
                     /label="appF gene"
     misc_feature    1137674..1137680
                     /Source="Nicolas_upshift_promotors"
                     /id="U917"
                     /multdbtbs="-"
                     /comp="M13"
                     /sig="Sig-"
                     /pcomp="0.375624375624376"
                     /psig="0.062937062937063"
                     /xcortree=2877
                     /SigmaFactorBS="ttaaagaagctgctcccagccactttgtggcttgtcaccttt
                     atagctaatgttgCCCGCACagctttgagagggggtatgcacactacataaacaacag
                     c"
                     /listShort="S404, appA, appA, appB, appC, S405, yjbA"
                     /GFF_Attribute="listLong"
                     /label="promotor_single_box"
                     /note="Geneious type: promotor_single_box"
     S_feature       1137679..1137755
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1213460_1213536"
                     /HighExp="T2.0H, S1, M9-stat, T5.0H, T3.0H, T1.30H, S2,
                     M0t90, T2.30H, BT"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="Sig-, SigA"
                     /TUshortPSig="0.0629, 0.999"
                     /TUlongSig="SigK"
                     /TUlongPSig=1
                     /label="S404"
     upshifts        1137679
                     /Source="Nicolas_upshifts"
                     /id="U917"
                     /multdbtbs="-"
                     /comp="M13"
                     /sig="Sig-"
                     /pcomp="0.375624375624376"
                     /psig="0.062937062937063"
                     /xcortree=2877
                     /SigmaFactorBS="ttaaagaagctgctcccagccactttgtggcttgtcaccttt
                     atagctaatgttgCCCGCACagctttgagagggggtatgcacactacataaacaacag
                     c"
                     /listShort="S404, appA, appA, appB, appC, S405, yjbA"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             1137756..1138247
                     /gene="appAn"
                     /locus_tag="BSU_11381"
                     /old_locus_tag="BSU11381"
                     /function="16.1: Circulate"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 5: Unknown function; PubMedId : 15588833,
                     25355936; Product type rc: receptor"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="oligopeptide ABC transporter
                     (oligopeptide-binding lipoprotein); N-terminal part of
                     AppA"
                     /translation="MKRRKTALMMLSVLMVLAIFLSACSGSKSSNSSAKKSAGKPQQG
                     GDLVVGSIGEPTLFNSLYSTDDASTDIENMLYSFLTKTDEKLNVKLSLAESIKELDGG
                     LAYDVKIKKGVKFHDGKELTADDVVFTYSVPLSKDYKGERGSTYEMLKSVEKKAITKS
                     CLS*"
                     /label="appAn CDS"
     gene            1137756..1138247
                     /gene="appAn"
                     /locus_tag="BSU_11381"
                     /old_locus_tag="BSU11381"
                     /pseudo
                     /label="appAn gene"
     CDS             1138220..1139386
                     /gene="appAc"
                     /locus_tag="BSU_11382"
                     /old_locus_tag="BSU11382"
                     /function="16.1: Circulate"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 5: Unknown function; PubMedId: 7997159,
                     15588833, 26728191; Product type lp: lipoprotein"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="oligopeptide ABC transporter
                     (oligopeptide-binding lipoprotein); C-terminal part of
                     AppA"
                     /translation="GDYEVLFKLKYKDGNFYNNALDSTAILPKHILGNVPIADLEENE
                     FNRKKPIGSGPFKFKEWKQGQYIKLEANDDYFEGRPYLDTVTYKVIPDANAAVAQLQA
                     GDINFFNVPATDYKTAEKFNNLKIVTDLALSYVYIGWNEKNELFKDKKVRQALTTALD
                     RESIVSQVLDGDGEVAYIPESPLSWNYPKDIDVPKFEYNEKKAKQMLAEAGWKDTNGD
                     GILDKDGKKFSFTLKTNQGNKVREDIAVVVQEQLKKIGIEVKTQIVEWSALVEQMNPP
                     NWDFDAMVMGWSLSTFPDQYDIFHSSQIKKGLNYVWYKNAEADKLMKDAKSISDRKQY
                     SKEYEQIYQKIAEDQPYTFLYYPNNHMAMPENLEGYKYHPKRDLYNIEKWWLAK*"
                     /label="appAc CDS"
     gene            1138220..1139386
                     /gene="appAc"
                     /locus_tag="BSU_11382"
                     /old_locus_tag="BSU11382"
                     /pseudo
                     /label="appAc gene"
     downshifts      1139377
                     /Source="Nicolas_upshifts"
                     /id="D618"
                     /incds=0
                     /nref=1
                     /ntot=49
                     /MaxReadThrough="7.71397"
                     /MaxDrop="3.11667"
                     /score="-1.00317393"
                     /energy="-13.3"
                     /TU="U916,U917"
                     /idTUdmin="U913"
                     /TUdmin=1715
                     /isTUend="FALSE"
                     /label="downshifts"
     CDS             1139462..1140412
                     /gene="appB"
                     /locus_tag="BSU_11390"
                     /old_locus_tag="BSU11390"
                     /function="16.1: Circulate"
                     /experiment="publication(s) with functional evidences,
                     PMID:7997159, 15849754, 16850406, 26728191"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 7997159, 15849754,
                     16850406, 26728191; Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="oligopeptide ABC transporter (permease)"
                     /protein_id="NP_389021.2"
                     /db_xref="EnsemblGenomes-Gn:BSU11390"
                     /db_xref="EnsemblGenomes-Tr:CAB12996"
                     /db_xref="GOA:P42062"
                     /db_xref="InterPro:IPR000515"
                     /db_xref="InterPro:IPR035906"
                     /db_xref="SubtiList:BG11088"
                     /db_xref="UniProtKB/Swiss-Prot:P42062"
                     /translation="MAAYIIRRTLMSIPILLGITILSFVIMKAAPGDPMTLMMDPKIS
                     QADREQFIEKYGLNDPQYVQYLKWLGNMVQGDFGTSIVRKGTPVSELIMARLPNTLLL
                     MLVSTILALMISIPFGVLSAKRPYSKIDYGITFTSFIGLAIPNFWFGLILIMVLSVNL
                     GWFPTGGVETLNTEFNIFDRIHHLILPAFVLATADMAGLTRYTRSNMLDVLNQDYIRT
                     ARAKGFKENRVLFKHGLRNALLPVITIFGLMIPSFIGGSVVVEQIFTWPGLGKLFVDS
                     AFQRDYPVIMAMTVISAVLVVVGNLIADILYAIVDPRIEY*"
                     /label="appB CDS"
     gene            1139462..1140412
                     /gene="appB"
                     /locus_tag="BSU_11390"
                     /old_locus_tag="BSU11390"
                     /label="appB gene"
     CDS             1140429..1141340
                     /gene="appC"
                     /locus_tag="BSU_11400"
                     /old_locus_tag="BSU11400"
                     /function="16.1: Circulate"
                     /experiment="publication(s) with functional evidences,
                     PMID:7997159, 15849754, 16850406, 26728191"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 7997159, 15849754,
                     16850406, 26728191; Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="oligopeptide ABC transporter (permease)"
                     /protein_id="NP_389022.1"
                     /db_xref="EnsemblGenomes-Gn:BSU11400"
                     /db_xref="EnsemblGenomes-Tr:CAB12997"
                     /db_xref="GOA:P42063"
                     /db_xref="InterPro:IPR000515"
                     /db_xref="InterPro:IPR025966"
                     /db_xref="InterPro:IPR035906"
                     /db_xref="SubtiList:BG11089"
                     /db_xref="UniProtKB/Swiss-Prot:P42063"
                     /translation="MSELQTTPSPEIRLKENISKKPETMTKIFWEKFSKNKLAILGAV
                     ILFIIIMSAVFAPLIAPYPQEQQSLLDKYKAPGLEHLMGTDKFGRDIFSRILYGARVS
                     LLVGFASVVGSILIGTVLGALAGYFRGIVDAVIMRVVDIVLSIPDIFLLITLVTIFKP
                     GVDKLILIFCLTGWTTTARLVRGEFLSLRSREYVLAAKTIGTKTHKIIFSHILPNALG
                     PIIVSATLKVGSVILAESALSYLGFGIQPPIASWGNMLQDAQNFTVMIQAWWYPLFPG
                     LFILMTVLCFNFVGDGLRDALDPKNIK*"
                     /label="appC CDS"
     gene            1140429..1141340
                     /gene="appC"
                     /locus_tag="BSU_11400"
                     /old_locus_tag="BSU11400"
                     /label="appC gene"
     downshifts      1141354
                     /Source="Nicolas_upshifts"
                     /id="D619"
                     /incds=0
                     /nref=62
                     /ntot=188
                     /MaxReadThrough="5.13927"
                     /MaxDrop="5.50153"
                     /score="22.0028545"
                     /energy="-11.6"
                     /TU="U916,U917"
                     /idTUdmin="U916"
                     /TUdmin="-923"
                     /isTUend="FALSE"
                     /label="downshifts"
     S_feature       1141399..1141506
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1217180_1217287"
                     /HighExp="LoTm, S1, S2, BT, T3.30H, T4.0H, T5.0H, T3.0H,
                     Glu, T2.30H"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="Sig-, SigA"
                     /TUshortPSig="0.0629, 0.999"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S405"
     promotor_-35    1141479..1141484
                     /Source="Nicolas_upshift_promotors"
                     /id="U918"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp=1
                     /psig=1
                     /xcortree=1160
                     /SigmaFactorBS="cccagtgattccagatttcctcaatctctttGGAATAatttc
                     tctatcccttGCCTATACTGTGGACAACAgtttttataaaagtgaggggttagagatg
                     t"
                     /listShort="yjbA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    1141500..1141518
                     /Source="Nicolas_upshift_promotors"
                     /id="U918"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp=1
                     /psig=1
                     /xcortree=1160
                     /SigmaFactorBS="cccagtgattccagatttcctcaatctctttGGAATAatttc
                     tctatcccttGCCTATACTGTGGACAACAgtttttataaaagtgaggggttagagatg
                     t"
                     /listShort="yjbA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        1141508
                     /Source="Nicolas_upshifts"
                     /id="U918"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp=1
                     /psig=1
                     /xcortree=1160
                     /SigmaFactorBS="cccagtgattccagatttcctcaatctctttGGAATAatttc
                     tctatcccttGCCTATACTGTGGACAACAgtttttataaaagtgaggggttagagatg
                     t"
                     /listShort="yjbA"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             1141545..1142297
                     /gene="yjbA"
                     /locus_tag="BSU_11410"
                     /old_locus_tag="BSU11410"
                     /function="16.3: Control"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 11717292, 22882546;
                     Product type f: factor"
                     /codon_start=1
                     /transl_table=11
                     /product="putative sporulation nucleic acid binding
                     protein"
                     /protein_id="NP_389023.1"
                     /db_xref="EnsemblGenomes-Gn:BSU11410"
                     /db_xref="EnsemblGenomes-Tr:CAB12998"
                     /db_xref="InterPro:IPR020909"
                     /db_xref="SubtiList:BG13130"
                     /db_xref="UniProtKB/Swiss-Prot:O31597"
                     /translation="MLFLHDVWVNWFEGEENGYNVCHFHEWRKEDTVELLDQVPLLRV
                     PSVLFHYIENDLSELPKGLLEDVHQKSYIRKNHERTKLEYCFVVTDGIGILAVDTIGY
                     TIPVRKSRLIPRQEQLVYEMVKDVEPETYEFEPKKLESSKEYHILSLAPEHVRGLTRK
                     ERQIKQLMFMALDQLKGLKNRAEIGYWYTEWNPHMYEQIKRMSFEEIWDMLYNETIEG
                     WSDKHLAFCENLIKGQPFFEKLWEMENESKVN*"
                     /label="yjbA CDS"
     gene            1141545..1142297
                     /gene="yjbA"
                     /locus_tag="BSU_11410"
                     /old_locus_tag="BSU11410"
                     /label="yjbA gene"
     downshifts      1142277
                     /Source="Nicolas_upshifts"
                     /id="D620"
                     /incds=0
                     /nref=32
                     /ntot=112
                     /MaxReadThrough="1.07428"
                     /MaxDrop="6.2264"
                     /score="22.0028545"
                     /energy="-11.6"
                     /TU="NA"
                     /idTUdmin="U916"
                     /TUdmin=0
                     /isTUend="TRUE"
                     /label="downshifts"
     CDS             complement(1142332..1143324)
                     /gene="trpS"
                     /locus_tag="BSU_11420"
                     /old_locus_tag="BSU11420"
                     /EC_number="6.1.1.2"
                     /function="16.2: Construct biomass (Anabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:8950174, 10706627, 12682299, 24572018"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 8950174, 10706627,
                     12682299, 24572018; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="tryptophanyl-tRNA synthetase"
                     /protein_id="NP_389024.1"
                     /db_xref="EnsemblGenomes-Gn:BSU11420"
                     /db_xref="EnsemblGenomes-Tr:CAB12999"
                     /db_xref="GOA:P21656"
                     /db_xref="InterPro:IPR001412"
                     /db_xref="InterPro:IPR002305"
                     /db_xref="InterPro:IPR002306"
                     /db_xref="InterPro:IPR014729"
                     /db_xref="InterPro:IPR024109"
                     /db_xref="PDB:3PRH"
                     /db_xref="SubtiList:BG10799"
                     /db_xref="UniProtKB/Swiss-Prot:P21656"
                     /translation="MKQTIFSGIQPSGSVTLGNYIGAMKQFVELQHDYNSYFCIVDQH
                     AITVPQDRLELRKNIRNLAALYLAVGLDPEKATLFIQSEVPAHAQAGWMMQCVAYIGE
                     LERMTQFKDKSKGNEAVVSGLLTYPPLMAADILLYGTDLVPVGEDQKQHLELTRNLAE
                     RFNKKYNDIFTIPEVKIPKVGARIMSLNDPLKKMSKSDPNQKAYITLLDEPKQLEKKI
                     KSAVTDSEGIVKFDKENKPGVSNLLTIYSILGNTTIEELEAKYEGKGYGEFKGDLAEV
                     VVNALKPIQDRYYELIESEELDRILDEGAERANRTANKMLKKMENAMGLGRKRR*"
                     /label="trpS CDS"
     gene            complement(1142332..1143324)
                     /gene="trpS"
                     /locus_tag="BSU_11420"
                     /old_locus_tag="BSU11420"
                     /label="trpS gene"
     downshifts      complement(1142353)
                     /Source="Nicolas_upshifts"
                     /id="D621"
                     /incds=0
                     /nref=224
                     /ntot=255
                     /MaxReadThrough="1.77115"
                     /MaxDrop="6.72647"
                     /score="27.6275522"
                     /energy="-11.6"
                     /TU="U919"
                     /idTUdmin="U919"
                     /TUdmin="-22"
                     /isTUend="TRUE"
                     /label="downshifts"
     misc_RNA        complement(1143383..1143597)
                     /gene="tboWA"
                     /locus_tag="BSU_misc_RNA_13"
                     /product="T-box riboswitch specific of tryptophan tRNA"
                     /experiment="publication(s) with functional evidences,
                     PMID:8045882, 9098041, 10706627, 10943892, 11842119,
                     12165569, 12547201, 1317842"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 8045882, 9098041,
                     10706627, 10943892, 11842119, 12165569, 12547201, 1317842;
                     Product type n: RNA"
                     /function="16.3: Control"
                     /label="tboWA RNA"
     gene            complement(1143383..1143597)
                     /gene="tboWA"
                     /locus_tag="BSU_misc_RNA_13"
                     /label="tboWA gene"
     downshifts      complement(1143431)
                     /Source="Nicolas_upshifts"
                     /id="D622"
                     /incds=0
                     /nref=37
                     /ntot=127
                     /MaxReadThrough="6.8472"
                     /MaxDrop="5.13001"
                     /score="25.1445248"
                     /energy="-19"
                     /TU="U919"
                     /idTUdmin="U919"
                     /TUdmin="-1100"
                     /isTUend="FALSE"
                     /label="downshifts"
     misc_feature    complement(1143616..1143635)
                     /Source="Nicolas_upshift_promotors"
                     /id="U919"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.509490509490509"
                     /psig="0.99100899100899"
                     /xcortree=602
                     /SigmaFactorBS="tatttatattattacaattttactggaaaaaagaatgttttt
                     tcatgatgacaaTTGGTTATAATTGATTTATAatgaagcaatcaaaagaaaagcttgc
                     t"
                     /listShort="NA, trpS"
                     /GFF_Attribute="listLong"
                     /label="promotor_single_box"
                     /note="Geneious type: promotor_single_box"
     upshifts        complement(1143629)
                     /Source="Nicolas_upshifts"
                     /id="U919"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.509490509490509"
                     /psig="0.99100899100899"
                     /xcortree=602
                     /SigmaFactorBS="tatttatattattacaattttactggaaaaaagaatgttttt
                     tcatgatgacaaTTGGTTATAATTGATTTATAatgaagcaatcaaaagaaaagcttgc
                     t"
                     /listShort="NA, trpS"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    1143884..1143891
                     /Source="Nicolas_upshift_promotors"
                     /id="U920"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.828171828171828"
                     /psig=1
                     /xcortree=491
                     /SigmaFactorBS="aactaacgaagtttaaatattttaaattgataaaataaTATT
                     GCAAtaaattatttgtttCATTATAATGAACTTGTTCActctattgttacagcttttt
                     t"
                     /listShort="S406, oppA, S407, oppB, oppC, oppD, oppF"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     S_feature       1143905..1144067
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1219686_1219848"
                     /HighExp="S1, T3.0H, T3.30H, T2.30H, T4.0H, T5.0H, LoTm,
                     T2.0H, M40t90, T1.30H"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig=1
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S406"
     promotor_-10    1143906..1143925
                     /Source="Nicolas_upshift_promotors"
                     /id="U920"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.828171828171828"
                     /psig=1
                     /xcortree=491
                     /SigmaFactorBS="aactaacgaagtttaaatattttaaattgataaaataaTATT
                     GCAAtaaattatttgtttCATTATAATGAACTTGTTCActctattgttacagcttttt
                     t"
                     /listShort="S406, oppA, S407, oppB, oppC, oppD, oppF"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        1143906
                     /Source="Nicolas_upshifts"
                     /id="U920"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.828171828171828"
                     /psig=1
                     /xcortree=491
                     /SigmaFactorBS="aactaacgaagtttaaatattttaaattgataaaataaTATT
                     GCAAtaaattatttgtttCATTATAATGAACTTGTTCActctattgttacagcttttt
                     t"
                     /listShort="S406, oppA, S407, oppB, oppC, oppD, oppF"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             1144068..1145705
                     /gene="oppA"
                     /locus_tag="BSU_11430"
                     /old_locus_tag="BSU11430"
                     /function="16.1: Circulate"
                     /experiment="publication(s) with functional evidences,
                     PMID:1901616, 11083832, 11401703, 12823818, 15588833,
                     23133654, 26176322, 22720735, 25355936"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 1901616, 11083832,
                     11401703, 12823818, 15588833, 23133654, 26176322,
                     22720735, 25355936; Product type lp: lipoprotein"
                     /codon_start=1
                     /transl_table=11
                     /product="oligopeptide ABC transporter (binding
                     lipoprotein)"
                     /protein_id="NP_389025.1"
                     /db_xref="EnsemblGenomes-Gn:BSU11430"
                     /db_xref="EnsemblGenomes-Tr:CAB13000"
                     /db_xref="GOA:P24141"
                     /db_xref="InterPro:IPR000914"
                     /db_xref="InterPro:IPR023765"
                     /db_xref="InterPro:IPR030678"
                     /db_xref="SubtiList:BG10771"
                     /db_xref="UniProtKB/Swiss-Prot:P24141"
                     /translation="MKKRWSIVTLMLIFTLVLSACGFGGSGSNGEGKKDSKGKTTLNI
                     NIKTEPFSLHPGLANDSVSGGVIRQTFEGLTRINADGEPEEGMASKIETSKDGKTYTF
                     TIRDGVKWSNGDPVTAQDFEYAWKWALDPNNESQYAYQLYYIKGAEAANTGKGSLDDV
                     AVKAVNDKTLKVELNNPTPYFTELTAFYTYMPINKKIAEKNKKWNTNAGDDYVSNGPF
                     KMTAWKHSGSITLEKNDQYWDKDKVKLKKIDMVMINNNNTELKKFQAGELDWAGMPLG
                     QLPTESLPTLKKDGSLHVEPIAGVYWYKFNTEAKPLDNVNIRKALTYSLDRQSIVKNV
                     TQGEQIPAMAAVPPTMKGFEDNKEGYFKDNDVKTAKEYLEKGLKEMGLSKASDLPKIK
                     LSYNTDDAHAKIAQAVQEMWKKNLGVDVELDNSEWNVYIDKLHSQDYQIGRMGWLGDF
                     NDPINFLELFRDKNGGNNDTGWENPEFKKLLNQSQTETDKTKRAELLKKAEGIFIDEM
                     PVAPIYFYTDTWVQDENLKGVIMPGTGEVYFRNAYFK*"
                     /label="oppA CDS"
     gene            1144068..1145705
                     /gene="oppA"
                     /locus_tag="BSU_11430"
                     /old_locus_tag="BSU11430"
                     /label="oppA gene"
     downshifts      1145599
                     /Source="Nicolas_upshifts"
                     /id="D623"
                     /incds=1
                     /nref=8
                     /ntot=166
                     /MaxReadThrough="6.94127"
                     /MaxDrop="3.3677"
                     /score="-4.2761508"
                     /energy="-15.6"
                     /TU="U920"
                     /idTUdmin="U916"
                     /TUdmin=3322
                     /isTUend="FALSE"
                     /label="downshifts"
     S_feature       1145706..1145812
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1221487_1221593"
                     /HighExp="S1, LoTm, T4.0H, BT, T3.30H, T3.0H, T5.0H,
                     M0t90, T2.30H, T2.0H"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig=1
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S407"
     CDS             1145813..1146748
                     /gene="oppB"
                     /locus_tag="BSU_11440"
                     /old_locus_tag="BSU11440"
                     /function="16.1: Circulate"
                     /experiment="publication(s) with functional evidences,
                     PMID:1901616, 11401703, 15849754, 16850406, 17600541,
                     25355936"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 1901616, 11401703,
                     15849754, 16850406, 17600541, 25355936; Product type t :
                     transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="oligopeptide ABC transporter (permease)"
                     /protein_id="NP_389026.1"
                     /db_xref="EnsemblGenomes-Gn:BSU11440"
                     /db_xref="EnsemblGenomes-Tr:CAB13001"
                     /db_xref="GOA:P24138"
                     /db_xref="InterPro:IPR000515"
                     /db_xref="InterPro:IPR035906"
                     /db_xref="SubtiList:BG10772"
                     /db_xref="UniProtKB/Swiss-Prot:P24138"
                     /translation="MLKYIGRRLVYMIITLFVIVTVTFFLMQAAPGGPFSGEKKLPPE
                     IEANLNAHYGLDKPLFVQYVSYLKSVAMWDFGPSFKYKGQSVNDLISSGFPVSFTLGA
                     EAILLALALGVLFGVIAALYHNKWQDYTVAILTIFGISVPSFIMAAVLQYVFSMKLGL
                     FPVAGWDSWAYTFLPSIALASMPMAFIARLSRSSMIEVLNSDYIRTAKAKGLSRPAVT
                     VRHAIRNALLPVVTYMGPMAAQVLTGSFIIETIFGIPGLGAHFVNSITNRDYTVIMGV
                     TVFFSVILLLCVLIVDVLYGIIDPRIKLSKAKKGA*"
                     /label="oppB CDS"
     gene            1145813..1146748
                     /gene="oppB"
                     /locus_tag="BSU_11440"
                     /old_locus_tag="BSU11440"
                     /label="oppB gene"
     promotor_-10    complement(1145856..1145875)
                     /Source="Nicolas_upshift_promotors"
                     /id="U921"
                     /multdbtbs="-"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp="0.508491508491508"
                     /psig="0.97902097902098"
                     /xcortree=1450
                     /SigmaFactorBS="gctttttctcacctgaaaatggcccgcccggtgctgCTTGCA
                     TtaagaagaatgtcacAGTTACAATCACAAATAGTGtgataatcatatagactaagcg
                     t"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(1145873)
                     /Source="Nicolas_upshifts"
                     /id="U921"
                     /multdbtbs="-"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp="0.508491508491508"
                     /psig="0.97902097902098"
                     /xcortree=1450
                     /SigmaFactorBS="gctttttctcacctgaaaatggcccgcccggtgctgCTTGCA
                     TtaagaagaatgtcacAGTTACAATCACAAATAGTGtgataatcatatagactaagcg
                     t"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(1145891..1145897)
                     /Source="Nicolas_upshift_promotors"
                     /id="U921"
                     /multdbtbs="-"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp="0.508491508491508"
                     /psig="0.97902097902098"
                     /xcortree=1450
                     /SigmaFactorBS="gctttttctcacctgaaaatggcccgcccggtgctgCTTGCA
                     TtaagaagaatgtcacAGTTACAATCACAAATAGTGtgataatcatatagactaagcg
                     t"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             1146752..1147669
                     /gene="oppC"
                     /locus_tag="BSU_11450"
                     /old_locus_tag="BSU11450"
                     /function="16.1: Circulate"
                     /experiment="publication(s) with functional evidences,
                     PMID:1901616, 11401703, 15849754, 16850406, 26782429"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 1901616, 11401703,
                     15849754, 16850406, 26782429; Product type t :
                     transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="oligopeptide ABC transporter (permease)"
                     /protein_id="NP_389027.1"
                     /db_xref="EnsemblGenomes-Gn:BSU11450"
                     /db_xref="EnsemblGenomes-Tr:CAB13002"
                     /db_xref="GOA:P24139"
                     /db_xref="InterPro:IPR000515"
                     /db_xref="InterPro:IPR025966"
                     /db_xref="InterPro:IPR035906"
                     /db_xref="SubtiList:BG10773"
                     /db_xref="UniProtKB/Swiss-Prot:P24139"
                     /translation="MQNIPKNMFEPAAANAGDAEKISKKSLSLWKDAMLRFRSNKLAM
                     VGLIIIVLIILMAIFAPMFSRYDYSTTNLLNADKPPSKDHWFGTDDLGRDIFVRTWVG
                     ARISIFIGVAAAVLDLLIGVIWGSISGFRGGRTDEIMMRIADILWAVPSLLMVILLMV
                     VLPKGLFTIIIAMTITGWINMARIVRGQVLQLKNQEYVLASQTLGAKTSRLLFKHIVP
                     NAMGSILVTMTLTVPTAIFTEAFLSYLGLGVPAPLASWGTMASDGLPALTYYPWRLFF
                     PAGFICITMFGFNVVGDGLRDALDPKLRK*"
                     /label="oppC CDS"
     gene            1146752..1147669
                     /gene="oppC"
                     /locus_tag="BSU_11450"
                     /old_locus_tag="BSU11450"
                     /label="oppC gene"
     CDS             1147674..1148750
                     /gene="oppD"
                     /locus_tag="BSU_11460"
                     /old_locus_tag="BSU11460"
                     /function="16.1: Circulate"
                     /experiment="publication(s) with functional evidences,
                     PMID:1901616, 11401703, 19202088, 22720735"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 1901616, 11401703,
                     19202088, 22720735; Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="oligopeptide ABC transporter (ATP-binding
                     protein)"
                     /protein_id="NP_389028.1"
                     /db_xref="EnsemblGenomes-Gn:BSU11460"
                     /db_xref="EnsemblGenomes-Tr:CAB13003"
                     /db_xref="GOA:P24136"
                     /db_xref="InterPro:IPR003439"
                     /db_xref="InterPro:IPR003593"
                     /db_xref="InterPro:IPR013563"
                     /db_xref="InterPro:IPR017871"
                     /db_xref="InterPro:IPR027417"
                     /db_xref="SubtiList:BG10774"
                     /db_xref="UniProtKB/Swiss-Prot:P24136"
                     /translation="MIRVTRLLEVKDLAISFKTYGGEVQAIRGVNFHLDKGETLAIVG
                     ESGSGKSVTSQAIMKLIPMPPGYFKRGEILFEGKDLVPLSEKEMQNVRGKEIGMIFQD
                     PMTSLNPTMKVGKQITEVLFKHEKISKEAAKKRAVELLELVGIPMPEKRVNQFPHEFS
                     GGMRQRVVIAMALAANPKLLIADEPTTALDVTIQAQILELMKDLQKKIDTSIIFITHD
                     LGVVANVADRVAVMYAGQIVETGTVDEIFYDPRHPYTWGLLASMPTLESSGEEELTAI
                     PGTPPDLTNPPKGDAFALRSSYAMKIDFEQEPPMFKVSDTHYVKSWLLHPDAPKVEPP
                     EAVKAKMRKLANTFEKPVLVREVE*"
                     /label="oppD CDS"
     gene            1147674..1148750
                     /gene="oppD"
                     /locus_tag="BSU_11460"
                     /old_locus_tag="BSU11460"
                     /label="oppD gene"
     CDS             1148752..1149669
                     /gene="oppF"
                     /locus_tag="BSU_11470"
                     /old_locus_tag="BSU11470"
                     /function="16.1: Circulate"
                     /experiment="publication(s) with functional evidences,
                     PMID:1901616, 7997159, 11401703, 23133654, 22720735"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 1901616, 7997159,
                     11401703, 23133654, 22720735; Product type t :
                     transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="oligopeptide ABC transporter (ATP-binding
                     protein)"
                     /protein_id="NP_389029.1"
                     /db_xref="EnsemblGenomes-Gn:BSU11470"
                     /db_xref="EnsemblGenomes-Tr:CAB13004"
                     /db_xref="GOA:P24137"
                     /db_xref="InterPro:IPR003439"
                     /db_xref="InterPro:IPR003593"
                     /db_xref="InterPro:IPR013563"
                     /db_xref="InterPro:IPR017871"
                     /db_xref="InterPro:IPR027417"
                     /db_xref="SubtiList:BG10775"
                     /db_xref="UniProtKB/Swiss-Prot:P24137"
                     /translation="MTEKLLEIKHLKQHFVTPRGTVKAVDDLSFDIYKGETLGLVGES
                     GCGKSTTGRSIIRLYEATDGEVLFNGENVHGRKSRKKLLEFNRKMQMIFQDPYASLNP
                     RMTVADIIAEGLDIHKLAKTKKERMQRVHELLETVGLNKEHANRYPHEFSGGQRQRIG
                     IARALAVDPEFIIADEPISALDVSIQAQVVNLMKELQKEKGLTYLFIAHDLSMVKYIS
                     DRIGVMYFGKLVELAPADELYENPLHPYTKSLLSAIPLPDPDYERNRVRQKYDPSVHQ
                     LKDGETMEFREVKPGHFVMCTEAEFKAFS*"
                     /label="oppF CDS"
     gene            1148752..1149669
                     /gene="oppF"
                     /locus_tag="BSU_11470"
                     /old_locus_tag="BSU11470"
                     /label="oppF gene"
     downshifts      1149639
                     /Source="Nicolas_upshifts"
                     /id="D624"
                     /incds=0
                     /nref=21
                     /ntot=196
                     /MaxReadThrough="1.58906"
                     /MaxDrop="5.17491"
                     /score="28.2861081"
                     /energy="-15.2"
                     /TU="NA"
                     /idTUdmin="U920"
                     /TUdmin="-8"
                     /isTUend="TRUE"
                     /label="downshifts"
     promotor_-35    1149719..1149722
                     /Source="Nicolas_upshift_promotors"
                     /id="U922"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.651348651348651"
                     /psig="0.97002997002997"
                     /xcortree=3166
                     /SigmaFactorBS="caatccttcaagagatttctcttgaaggatttttttgcgtct
                     tcATAGaaagtgagaatgatAACATTTACAATTAGAGGAAaaagcggaggcgaaatac
                     g"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     upshifts        1149735
                     /Source="Nicolas_upshifts"
                     /id="U922"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.651348651348651"
                     /psig="0.97002997002997"
                     /xcortree=3166
                     /SigmaFactorBS="caatccttcaagagatttctcttgaaggatttttttgcgtct
                     tcATAGaaagtgagaatgatAACATTTACAATTAGAGGAAaaagcggaggcgaaatac
                     g"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-10    1149737..1149756
                     /Source="Nicolas_upshift_promotors"
                     /id="U922"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.651348651348651"
                     /psig="0.97002997002997"
                     /xcortree=3166
                     /SigmaFactorBS="caatccttcaagagatttctcttgaaggatttttttgcgtct
                     tcATAGaaagtgagaatgatAACATTTACAATTAGAGGAAaaagcggaggcgaaatac
                     g"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     CDS             1149776..1150993
                     /gene="yjbB"
                     /locus_tag="BSU_11480"
                     /old_locus_tag="BSU11480"
                     /function="16.1: Circulate"
                     /function="16.6: Maintain"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 14563878, 15849754,
                     16850406; Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="putative exporter"
                     /protein_id="NP_389030.2"
                     /db_xref="EnsemblGenomes-Gn:BSU11480"
                     /db_xref="EnsemblGenomes-Tr:CAB13005"
                     /db_xref="GOA:O31600"
                     /db_xref="InterPro:IPR011701"
                     /db_xref="InterPro:IPR020846"
                     /db_xref="InterPro:IPR036259"
                     /db_xref="SubtiList:BG13131"
                     /db_xref="UniProtKB/Swiss-Prot:O31600"
                     /translation="MQFLHNKNVFALLLSQSFQSLAGVLVTIVLMVRIYQMTDSVFLA
                     GLILSFMSFASIAASFCVSPVLRILGFKKVLAGANLLRAVFIILMAYSVTHHGQAFFW
                     ITLLFVFCFSFAGAFFQPARFALLPIIVPKKQYVKANGVISLSNQLFLTAGWGLGGLL
                     TYAVPFELVVGAAICLFVLSGASISVLHVNEEEAAGTAETASVRSIWKDLMIIPIVRD
                     ITVMDMLEALAGSVWSSAILLAFTAAVLHETEVWWGMFNASYFIGAIVGSVIAIRFSS
                     FFERNMGYAIMFSSLVMSALTLLFSFSPVPFLCALACAAMGPFYQVRDICQETMLQEV
                     IPEQKRIGIMAAKNAILTPWSGVTYSIMGLVADAAGAKIAFIAAAALYIMTFLIALAQ
                     PRLVHYRRENRVQ*"
                     /label="yjbB CDS"
     gene            1149776..1150993
                     /gene="yjbB"
                     /locus_tag="BSU_11480"
                     /old_locus_tag="BSU11480"
                     /label="yjbB gene"
     promotor_-35    1151046..1151055
                     /Source="Nicolas_upshift_promotors"
                     /id="U923"
                     /multdbtbs="SigW,SigX"
                     /comp="M9"
                     /sig="SigWXY"
                     /pcomp=1
                     /psig=1
                     /xcortree=114
                     /SigmaFactorBS="cagctggctccgttttgctgaaaaaaaaaTGAAACCATGgcg
                     gaagttcgcACGTCTTTATAGATGTaaggctgtttaaacaagaagaaatggggtatat
                     c"
                     /listShort="S408, yjbC, S409, spxA, S410"
                     /listLong="S411, mecA"
                     /label="promotor_-35"
     promotor_-10    1151068..1151083
                     /Source="Nicolas_upshift_promotors"
                     /id="U923"
                     /multdbtbs="SigW,SigX"
                     /comp="M9"
                     /sig="SigWXY"
                     /pcomp=1
                     /psig=1
                     /xcortree=114
                     /SigmaFactorBS="cagctggctccgttttgctgaaaaaaaaaTGAAACCATGgcg
                     gaagttcgcACGTCTTTATAGATGTaaggctgtttaaacaagaagaaatggggtatat
                     c"
                     /listShort="S408, yjbC, S409, spxA, S410"
                     /listLong="S411, mecA"
                     /label="promotor_-10"
     S_feature       1151077..1151156
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1226858_1226937"
                     /HighExp="Etha, B60, M9-stat, T0.30H, Salt, T3.0H, T1.0H,
                     T4.0H, T2.30H, T3.30H"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigWXY"
                     /TUshortPSig=1
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S408"
     upshifts        1151077
                     /Source="Nicolas_upshifts"
                     /id="U923"
                     /multdbtbs="SigW,SigX"
                     /comp="M9"
                     /sig="SigWXY"
                     /pcomp=1
                     /psig=1
                     /xcortree=114
                     /SigmaFactorBS="cagctggctccgttttgctgaaaaaaaaaTGAAACCATGgcg
                     gaagttcgcACGTCTTTATAGATGTaaggctgtttaaacaagaagaaatggggtatat
                     c"
                     /listShort="S408, yjbC, S409, spxA, S410"
                     /listLong="S411, mecA"
                     /label="upshifts"
     CDS             1151157..1151735
                     /gene="yjbC"
                     /locus_tag="BSU_11490"
                     /old_locus_tag="BSU11490"
                     /function="16.6: Maintain"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 17158660, 17158663,
                     21815947; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative thiol oxidation management factor;
                     putative acetyltransferase"
                     /protein_id="NP_389031.2"
                     /db_xref="EnsemblGenomes-Gn:BSU11490"
                     /db_xref="EnsemblGenomes-Tr:CAB13006"
                     /db_xref="GOA:O31601"
                     /db_xref="InterPro:IPR000182"
                     /db_xref="InterPro:IPR016181"
                     /db_xref="SubtiList:BG13132"
                     /db_xref="UniProtKB/Swiss-Prot:O31601"
                     /translation="MNWYEKLSEYFPIEEMKSKAHMEALLKERSDIYHKDEGKHHILM
                     FAEFDSFIFVDYLYVSKDARGQGLGGKLIAKLKKKNKPILLEVEPVDEDDTDTEKRLR
                     FYQREHFKHAQSIGYRRRSLATNEVNKMEILYWSPKTESEEEILEAMKQTYENIHTYK
                     DEKWYGESYEKTDEVLEIIDEEKQKNIFDQLS*"
                     /label="yjbC CDS"
     gene            1151157..1151735
                     /gene="yjbC"
                     /locus_tag="BSU_11490"
                     /old_locus_tag="BSU11490"
                     /label="yjbC gene"
     S_feature       1151736..1151850
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1227517_1227631"
                     /HighExp="B60, Etha, Salt, T0.30H, M9-stat, LoTm, Gly,
                     T1.0H, B36, Heat"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigWXY"
                     /TUshortPSig=1
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S409"
     promotor_-10    complement(1151787..1151806)
                     /Source="Nicolas_upshift_promotors"
                     /id="U924"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.507492507492508"
                     /psig="0.622377622377622"
                     /xcortree=51
                     /SigmaFactorBS="aaaaaggaatctttacaggtattaTACTATAAaaaagtaagt
                     gtgAACAGTATCCTAAGAAAAAAatgtgtcaatccagcaaatttttaatgttcatgat
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(1151791)
                     /Source="Nicolas_upshifts"
                     /id="U924"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.507492507492508"
                     /psig="0.622377622377622"
                     /xcortree=51
                     /SigmaFactorBS="aaaaaggaatctttacaggtattaTACTATAAaaaagtaagt
                     gtgAACAGTATCCTAAGAAAAAAatgtgtcaatccagcaaatttttaatgttcatgat
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(1151820..1151827)
                     /Source="Nicolas_upshift_promotors"
                     /id="U924"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.507492507492508"
                     /psig="0.622377622377622"
                     /xcortree=51
                     /SigmaFactorBS="aaaaaggaatctttacaggtattaTACTATAAaaaagtaagt
                     gtgAACAGTATCCTAAGAAAAAAatgtgtcaatccagcaaatttttaatgttcatgat
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     misc_feature    1151853..1151866
                     /Source="Nicolas_upshift_promotors"
                     /id="U925"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.815184815184815"
                     /psig="0.973026973026973"
                     /xcortree=1536
                     /SigmaFactorBS="cttaggatactgttcacacttacttttttatagtataatacc
                     tgtaaagattccttttttAGAGTAATTTCAATttaagaataaaatagatgttcatcct
                     a"
                     /listShort="spxA"
                     /GFF_Attribute="listLong"
                     /label="promotor_single_box"
                     /note="Geneious type: promotor_single_box"
     upshifts        1151853
                     /Source="Nicolas_upshifts"
                     /id="U925"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.815184815184815"
                     /psig="0.973026973026973"
                     /xcortree=1536
                     /SigmaFactorBS="cttaggatactgttcacacttacttttttatagtataatacc
                     tgtaaagattccttttttAGAGTAATTTCAATttaagaataaaatagatgttcatcct
                     a"
                     /listShort="spxA"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             1151916..1152311
                     /gene="spxA"
                     /locus_tag="BSU_11500"
                     /old_locus_tag="BSU11500"
                     /function="16.3: Control"
                     /experiment="publication(s) with functional evidences,
                     PMID:12642660, 14597697, 15659166, 16249335, 16740936,
                     18662407, 22307755, 23894131, 28484046, 22720735"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 12642660, 14597697,
                     15659166, 16249335, 16740936, 18662407, 22307755,
                     23894131, 28484046, 22720735; Product type r: regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="redox-sensitive regulator"
                     /protein_id="NP_389032.1"
                     /db_xref="EnsemblGenomes-Gn:BSU11500"
                     /db_xref="EnsemblGenomes-Tr:CAB13007"
                     /db_xref="GOA:O31602"
                     /db_xref="InterPro:IPR006504"
                     /db_xref="InterPro:IPR006660"
                     /db_xref="InterPro:IPR023731"
                     /db_xref="InterPro:IPR036249"
                     /db_xref="PDB:1Z3E"
                     /db_xref="PDB:3GFK"
                     /db_xref="PDB:3IHQ"
                     /db_xref="SubtiList:BG13133"
                     /db_xref="UniProtKB/Swiss-Prot:O31602"
                     /translation="MVTLYTSPSCTSCRKARAWLEEHEIPFVERNIFSEPLSIDEIKQ
                     ILRMTEDGTDEIISTRSKVFQKLNVNVESMPLQDLYRLINEHPGLLRRPIIIDEKRLQ
                     VGYNEDEIRRFLPRKVRSFQLREAQRLAN*"
                     /label="spxA CDS"
     gene            1151916..1152311
                     /gene="spxA"
                     /locus_tag="BSU_11500"
                     /old_locus_tag="BSU11500"
                     /label="spxA gene"
     promotor_no_box complement(1152147..1152247)
                     /Source="Nicolas_upshift_promotors"
                     /id="U926"
                     /multdbtbs="-"
                     /comp="M13"
                     /sig="Sig-"
                     /pcomp="0.96103896103896"
                     /psig="0.000999000999001"
                     /xcortree=57
                     /SigmaFactorBS="ctgatttcgtcttcgttatatccgacctgcaaacgtttttcg
                     tcaatgatgatcggacggcgaagcaaacctggatgctcgttgatcaagcggtacaaat
                     c"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_no_box"
     upshifts        complement(1152187)
                     /Source="Nicolas_upshifts"
                     /id="U926"
                     /multdbtbs="-"
                     /comp="M13"
                     /sig="Sig-"
                     /pcomp="0.96103896103896"
                     /psig="0.000999000999001"
                     /xcortree=57
                     /SigmaFactorBS="ctgatttcgtcttcgttatatccgacctgcaaacgtttttcg
                     tcaatgatgatcggacggcgaagcaaacctggatgctcgttgatcaagcggtacaaat
                     c"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     downshifts      1152309
                     /Source="Nicolas_upshifts"
                     /id="D625"
                     /incds=0
                     /nref=263
                     /ntot=269
                     /MaxReadThrough="4.34531"
                     /MaxDrop="8.0579"
                     /score="7.42972561"
                     /energy="-8.8"
                     /TU="U923"
                     /idTUdmin="U925"
                     /TUdmin=0
                     /isTUend="TRUE"
                     /label="downshifts"
     S_feature       1152354..1153143
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1228135_1228924"
                     /HighExp="B60, B36, Etha, M9-stat, Salt, H2O2, Paraq,
                     Cold, G180, G135"
                     /AntisenseName="yjbE"
                     /AntisenseCor="-0.18634010398760401"
                     /AntisenseRegPval="-2.7"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigWXY"
                     /TUshortPSig=1
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S410"
     CDS             complement(1152354..1153010)
                     /gene="yjbE"
                     /locus_tag="BSU_11510"
                     /old_locus_tag="BSU11510"
                     /function="16.8: Protect"
                     /function="16.1: Circulate"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 15849754, 16850406;
                     Product type m: membrane component"
                     /codon_start=1
                     /transl_table=11
                     /product="putative membrane protein of unknown function"
                     /protein_id="NP_389033.1"
                     /db_xref="EnsemblGenomes-Gn:BSU11510"
                     /db_xref="EnsemblGenomes-Tr:CAB13008"
                     /db_xref="GOA:O31603"
                     /db_xref="InterPro:IPR005496"
                     /db_xref="InterPro:IPR022301"
                     /db_xref="SubtiList:BG13134"
                     /db_xref="UniProtKB/Swiss-Prot:O31603"
                     /translation="MEHDYLISLLVIVGIDLILGGDNAVVIAMASRHLPDKQRQQAII
                     LGTFIAVAMRIGLTSAAVYLLNIPFLQCAGGIFLLYLGYQLLIEKKDTKHIKSSTSLW
                     RAIRTIVLADLFMSLDNVIAVAGASHGEFSLVVIGLCVSVPVIIWGSKLIHIALEKIP
                     LLIYAGSGLLAYTGGEMIVRDKKLSLFMAQHGTVETLLPILTVAFVILASIYYQQVEK
                     *"
                     /label="yjbE CDS"
     gene            complement(1152354..1153010)
                     /gene="yjbE"
                     /locus_tag="BSU_11510"
                     /old_locus_tag="BSU11510"
                     /label="yjbE gene"
     promotor_-10    complement(1153040..1153058)
                     /Source="Nicolas_upshift_promotors"
                     /id="U927"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.997002997002997"
                     /psig="0.997002997002997"
                     /xcortree=987
                     /SigmaFactorBS="cacctttgcctaaaaaacggcagatcaggcggctgatATCAT
                     AaaatatgacctgtcTCATATAGTAGTAGTACAAgcgaaggactgaaagcgaggtgcc
                     g"
                     /listShort="yjbE"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(1153055)
                     /Source="Nicolas_upshifts"
                     /id="U927"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.997002997002997"
                     /psig="0.997002997002997"
                     /xcortree=987
                     /SigmaFactorBS="cacctttgcctaaaaaacggcagatcaggcggctgatATCAT
                     AaaatatgacctgtcTCATATAGTAGTAGTACAAgcgaaggactgaaagcgaggtgcc
                     g"
                     /listShort="yjbE"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(1153073..1153078)
                     /Source="Nicolas_upshift_promotors"
                     /id="U927"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.997002997002997"
                     /psig="0.997002997002997"
                     /xcortree=987
                     /SigmaFactorBS="cacctttgcctaaaaaacggcagatcaggcggctgatATCAT
                     AaaatatgacctgtcTCATATAGTAGTAGTACAAgcgaaggactgaaagcgaggtgcc
                     g"
                     /listShort="yjbE"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-35    1153116..1153123
                     /Source="Nicolas_upshift_promotors"
                     /id="U928"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.845154845154845"
                     /psig="0.998001998001998"
                     /xcortree=622
                     /SigmaFactorBS="cgcctgatctgccgttttttaggcaaaggtgCATTTTTAttt
                     cttttgtgacTGTTTTATCATAAAATAGAAatacaaaggaattcacactggccttggt
                     t"
                     /listShort="S411, mecA, S412, S413, coiA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    1153137..1153156
                     /Source="Nicolas_upshift_promotors"
                     /id="U928"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.845154845154845"
                     /psig="0.998001998001998"
                     /xcortree=622
                     /SigmaFactorBS="cgcctgatctgccgttttttaggcaaaggtgCATTTTTAttt
                     cttttgtgacTGTTTTATCATAAAATAGAAatacaaaggaattcacactggccttggt
                     t"
                     /listShort="S411, mecA, S412, S413, coiA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     S_feature       1153145..1153286
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1228926_1229067"
                     /HighExp="B60, Diami, Etha, dia5, LPhT, M9-stat, T5.0H,
                     T3.0H, dia15, T0.30H"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.998"
                     /TUlongSig="SigWXY"
                     /TUlongPSig=1
                     /label="S411"
     upshifts        1153145
                     /Source="Nicolas_upshifts"
                     /id="U928"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.845154845154845"
                     /psig="0.998001998001998"
                     /xcortree=622
                     /SigmaFactorBS="cgcctgatctgccgttttttaggcaaaggtgCATTTTTAttt
                     cttttgtgacTGTTTTATCATAAAATAGAAatacaaaggaattcacactggccttggt
                     t"
                     /listShort="S411, mecA, S412, S413, coiA"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             1153180..1153320
                     /locus_tag="BSU_11515"
                     /old_locus_tag="BSU11515"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved hypothetical protein"
                     /protein_id="YP_009513949.1"
                     /translation="MVKVKMWTEWVKCSKVQLIGSLDVPSTSYIEGKVGKWKLKELTS
                     IQ*"
                     /label="conserved hypothetical protein CDS"
     gene            1153180..1153320
                     /locus_tag="BSU_11515"
                     /old_locus_tag="BSU11515"
                     /label="gene"
     CDS             1153287..1153943
                     /gene="mecA"
                     /locus_tag="BSU_11520"
                     /old_locus_tag="BSU11520"
                     /function="16.3: Control"
                     /function="16.6: Maintain"
                     /experiment="publication(s) with functional evidences,
                     PMID:10361283, 10447896, 16525504, 19801546, 21435029,
                     23595989"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 10361283, 10447896,
                     16525504, 19801546, 21435029, 23595989; Product type f :
                     factor"
                     /codon_start=1
                     /transl_table=11
                     /product="adaptor protein controlling oligomerization of
                     the AAA+ protein ClpC"
                     /protein_id="NP_389034.1"
                     /db_xref="EnsemblGenomes-Gn:BSU11520"
                     /db_xref="EnsemblGenomes-Tr:CAB13009"
                     /db_xref="GOA:P37958"
                     /db_xref="InterPro:IPR008681"
                     /db_xref="PDB:2Y1R"
                     /db_xref="PDB:3J3R"
                     /db_xref="PDB:3J3S"
                     /db_xref="PDB:3J3T"
                     /db_xref="PDB:3J3U"
                     /db_xref="PDB:3JTP"
                     /db_xref="PDB:3PXG"
                     /db_xref="PDB:3PXI"
                     /db_xref="SubtiList:BG10680"
                     /db_xref="UniProtKB/Swiss-Prot:P37958"
                     /translation="MEIERINEHTVKFYMSYGDIEDRGFDREEIWYNRERSEELFWEV
                     MDEVHEEEEFAVEGPLWIQVQALDKGLEIIVTKAQLSKDGQKLELPIPEDKKQEPASE
                     DLDALLDDFQKEEQAVNQEEKEQKLQFVLRFGDFEDVISLSKLNVNGSKTTLYSFENR
                     YYLYVDFCNMTDEEVENQLSILLEYATESSISIHRLEEYGKLIISEHALETIKKHFAS
                     *"
                     /label="mecA CDS"
     gene            1153287..1153943
                     /gene="mecA"
                     /locus_tag="BSU_11520"
                     /old_locus_tag="BSU11520"
                     /label="mecA gene"
     downshifts      1153933
                     /Source="Nicolas_upshifts"
                     /id="D626"
                     /incds=0
                     /nref=120
                     /ntot=308
                     /MaxReadThrough="5.41786"
                     /MaxDrop="7.67172"
                     /score="32.2431225"
                     /energy="-11.8"
                     /TU="U928"
                     /idTUdmin="U928"
                     /TUdmin="-774"
                     /isTUend="FALSE"
                     /label="downshifts"
     CDS             complement(1153938..1154060)
                     /locus_tag="BSU_11525"
                     /old_locus_tag="BSU11525"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved hypothetical protein"
                     /protein_id="YP_009513950.1"
                     /translation="MINSCSLYFLLVYMFLIFHISKMAFSCIKKTDFRKEIGLL*"
                     /label="conserved hypothetical protein CDS"
     gene            complement(1153938..1154060)
                     /locus_tag="BSU_11525"
                     /old_locus_tag="BSU11525"
                     /label="gene"
     S_feature       1153978..1154067
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1229759_1229848"
                     /HighExp="Etha, M9-stat, B60, dia15, T0.30H, Diami, C30,
                     H2O2, dia5, S8"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.998"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S412"
     promotor_-35    1154046..1154054
                     /Source="Nicolas_upshift_promotors"
                     /id="U929"
                     /multdbtbs="-"
                     /comp="M1"
                     /sig="SigH"
                     /pcomp="0.876123876123876"
                     /psig="0.876123876123876"
                     /xcortree=2965
                     /SigmaFactorBS="aaatcaaaaacatatagacaagcagaaaatacagcgaACAGG
                     AGTTgatcatctttTCCAGAAAGTATACTTCATctggaaaggagagatgacaattgtt
                     t"
                     /listShort="S413, coiA, pepF"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    1154065..1154083
                     /Source="Nicolas_upshift_promotors"
                     /id="U929"
                     /multdbtbs="-"
                     /comp="M1"
                     /sig="SigH"
                     /pcomp="0.876123876123876"
                     /psig="0.876123876123876"
                     /xcortree=2965
                     /SigmaFactorBS="aaatcaaaaacatatagacaagcagaaaatacagcgaACAGG
                     AGTTgatcatctttTCCAGAAAGTATACTTCATctggaaaggagagatgacaattgtt
                     t"
                     /listShort="S413, coiA, pepF"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     S_feature       1154069..1154133
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1229850_1229914"
                     /HighExp="Etha, G/S, GM 150, T-4.40H, S2, T-2.40H, Pyr,
                     C90, M9-tran, T-3.40H"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigH, SigA"
                     /TUshortPSig="0.876, 0.998"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S413"
     upshifts        1154069
                     /Source="Nicolas_upshifts"
                     /id="U929"
                     /multdbtbs="-"
                     /comp="M1"
                     /sig="SigH"
                     /pcomp="0.876123876123876"
                     /psig="0.876123876123876"
                     /xcortree=2965
                     /SigmaFactorBS="aaatcaaaaacatatagacaagcagaaaatacagcgaACAGG
                     AGTTgatcatctttTCCAGAAAGTATACTTCATctggaaaggagagatgacaattgtt
                     t"
                     /listShort="S413, coiA, pepF"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             1154134..1155255
                     /gene="coiA"
                     /locus_tag="BSU_11530"
                     /old_locus_tag="BSU11530"
                     /function="16.1: Circulate"
                     /function="16.11: Scavenge (Catabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:10438773, 17630974, 23046409, 26880300"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 10438773, 17630974,
                     23046409, 26880300; Product type s: structure"
                     /codon_start=1
                     /transl_table=11
                     /product="protein involved in establishment of DNA
                     transport in competence"
                     /protein_id="NP_389035.1"
                     /db_xref="EnsemblGenomes-Gn:BSU11530"
                     /db_xref="EnsemblGenomes-Tr:CAB13010"
                     /db_xref="GOA:O31604"
                     /db_xref="InterPro:IPR010330"
                     /db_xref="InterPro:IPR021176"
                     /db_xref="SubtiList:BG13135"
                     /db_xref="UniProtKB/Swiss-Prot:O31604"
                     /translation="MFHLLGAQQNQKLKRRRFFCPVCGGELAVKLGLQKAPHFAHKQN
                     KSCAIDIEPESAYHLEGKRQLYVWLKTQRASPILEPYIRTINQRPDVMARIKEHMLAV
                     EYQCATIAPDVFQKRTEGFKQEGIIPQWIMGYSRLKRTASSFYQLSTFHWQFINASPY
                     RELICYCPERRSFLRLSHIIPFYTNHSYSSVQTIPIHRAGAGDLFFTEPKPSIQYSGW
                     TKAIHRFRHKPHRFNSKETNRLRLLFYEKRQTPFSFLPTEVFVPVRKGAVFKSPVFVW
                     QGFLYLFMTDLGGKRAPIRFSAVLQQCKLHIHNKNIALRSECSEECLSEAVKQYIDFL
                     CKKGFLRETQKEVYVLNQPAGGIHSMQDLIERDRSCFIE*"
                     /label="coiA CDS"
     gene            1154134..1155255
                     /gene="coiA"
                     /locus_tag="BSU_11530"
                     /old_locus_tag="BSU11530"
                     /label="coiA gene"
     promotor_-35    1154909..1154915
                     /Source="Nicolas_upshift_promotors"
                     /id="U930"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp="0.999000999001"
                     /psig="0.999000999001"
                     /xcortree=156
                     /SigmaFactorBS="atgagaaacgacagacgcctttttcttttctgccgactgaag
                     TGTTTGTtcctgttagaaaagGGGCAGTTTTTAAGAGTCCggtttttgtgtggcaggg
                     g"
                     /listShort="pepF"
                     /listLong="S414, S415"
                     /label="promotor_-35"
     upshifts        1154927
                     /Source="Nicolas_upshifts"
                     /id="U930"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp="0.999000999001"
                     /psig="0.999000999001"
                     /xcortree=156
                     /SigmaFactorBS="atgagaaacgacagacgcctttttcttttctgccgactgaag
                     TGTTTGTtcctgttagaaaagGGGCAGTTTTTAAGAGTCCggtttttgtgtggcaggg
                     g"
                     /listShort="pepF"
                     /listLong="S414, S415"
                     /label="upshifts"
     promotor_-10    1154930..1154948
                     /Source="Nicolas_upshift_promotors"
                     /id="U930"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp="0.999000999001"
                     /psig="0.999000999001"
                     /xcortree=156
                     /SigmaFactorBS="atgagaaacgacagacgcctttttcttttctgccgactgaag
                     TGTTTGTtcctgttagaaaagGGGCAGTTTTTAAGAGTCCggtttttgtgtggcaggg
                     g"
                     /listShort="pepF"
                     /listLong="S414, S415"
                     /label="promotor_-10"
     promotor_-35    1155141..1155149
                     /Source="Nicolas_upshift_promotors"
                     /id="U931"
                     /multdbtbs="-"
                     /comp="M1"
                     /sig="SigH"
                     /pcomp="0.999000999001"
                     /psig="0.999000999001"
                     /xcortree=546
                     /SigmaFactorBS="agcggttaaacagtatattgattttttgtgcaaGAAGGGATT
                     tttaagggagaCTCAGAAAGAAGTATATGTgctgaatcagcctgcaggaggcatacac
                     t"
                     /listShort="pepF"
                     /listLong="S414, S415"
                     /label="promotor_-35"
     promotor_-10    1155161..1155179
                     /Source="Nicolas_upshift_promotors"
                     /id="U931"
                     /multdbtbs="-"
                     /comp="M1"
                     /sig="SigH"
                     /pcomp="0.999000999001"
                     /psig="0.999000999001"
                     /xcortree=546
                     /SigmaFactorBS="agcggttaaacagtatattgattttttgtgcaaGAAGGGATT
                     tttaagggagaCTCAGAAAGAAGTATATGTgctgaatcagcctgcaggaggcatacac
                     t"
                     /listShort="pepF"
                     /listLong="S414, S415"
                     /label="promotor_-10"
     upshifts        1155168
                     /Source="Nicolas_upshifts"
                     /id="U931"
                     /multdbtbs="-"
                     /comp="M1"
                     /sig="SigH"
                     /pcomp="0.999000999001"
                     /psig="0.999000999001"
                     /xcortree=546
                     /SigmaFactorBS="agcggttaaacagtatattgattttttgtgcaaGAAGGGATT
                     tttaagggagaCTCAGAAAGAAGTATATGTgctgaatcagcctgcaggaggcatacac
                     t"
                     /listShort="pepF"
                     /listLong="S414, S415"
                     /label="upshifts"
     promotor_-35    1155249..1155255
                     /Source="Nicolas_upshift_promotors"
                     /id="U932"
                     /multdbtbs="-"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp=1
                     /psig=1
                     /xcortree=911
                     /SigmaFactorBS="tctcatagaaagagaccgcagctgttttatAGAATGAgtttg
                     tcttatttgGCTCACCCTAAGacaaaggtggtgggcaggctgtgaaaggcacaaaagg
                     a"
                     /listShort="pepF"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    1155270..1155281
                     /Source="Nicolas_upshift_promotors"
                     /id="U932"
                     /multdbtbs="-"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp=1
                     /psig=1
                     /xcortree=911
                     /SigmaFactorBS="tctcatagaaagagaccgcagctgttttatAGAATGAgtttg
                     tcttatttgGCTCACCCTAAGacaaaggtggtgggcaggctgtgaaaggcacaaaagg
                     a"
                     /listShort="pepF"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        1155279
                     /Source="Nicolas_upshifts"
                     /id="U932"
                     /multdbtbs="-"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp=1
                     /psig=1
                     /xcortree=911
                     /SigmaFactorBS="tctcatagaaagagaccgcagctgttttatAGAATGAgtttg
                     tcttatttgGCTCACCCTAAGacaaaggtggtgggcaggctgtgaaaggcacaaaagg
                     a"
                     /listShort="pepF"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             1155302..1157314
                     /gene="pepF"
                     /locus_tag="BSU_11540"
                     /old_locus_tag="BSU11540"
                     /function="16.11: Scavenge (Catabolism)"
                     /function="16.3: Control"
                     /experiment="publication(s) with functional evidences,
                     PMID:11741842"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 11741842; Product type e:
                     enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="oligoendopeptidase F"
                     /protein_id="NP_389036.2"
                     /db_xref="EnsemblGenomes-Gn:BSU11540"
                     /db_xref="EnsemblGenomes-Tr:CAB13011"
                     /db_xref="GOA:O31605"
                     /db_xref="InterPro:IPR001567"
                     /db_xref="InterPro:IPR004438"
                     /db_xref="InterPro:IPR013647"
                     /db_xref="SubtiList:BG13136"
                     /db_xref="UniProtKB/Swiss-Prot:O31605"
                     /translation="MKGTKGKVFRVFTAFLAFVLFITAYDLTKGSEKPEDIHNTSLLR
                     NSCFFNWLESKKTRGITMAEEKKANQLPDRSEVKAEDTWRLEDIFPSDEAWNKEFQAV
                     KELIPNLSKYKGKLADSADHLYEALTYQDKVMERLGRLYTYAHMRSDQDTGNSFYQGL
                     NDKAGNLYTQAASATAYLVPEILSIEEDKLQQFILEKEELKLYSHAIEEITKERPHVL
                     SEKEEALLAEASEVLGSSSNTFSVLNNADITFPSIKDEDGNEKQITHGNFINFLESEN
                     REVRKNAFDAVYKTYGQYKNTMATTLSGTVKKDNFYARVKKYKSAREAALSNNSIPEE
                     VYDNLVKTINKHLPLLHRYIALRKKVLELDEVHIYDLYTPLVKDAGMKVTYEEAKDYM
                     LKGLAPLGEEYASILKEGLENRWVDVYENKGKRNGAYSSGAYGTNPYILMNWHNNVNN
                     LFTLVHEFGHSVHSYYTRKHQPYPYGNYSIFVAEVASTTNEALLGEYLLNNLEDEKQR
                     LYILNHMLEGFRGTVFRQTMFAEFEHLIHTKAQEGEPLTPELLTNVYYDLNKKYFGDG
                     MVIDKEIGLEWSRIPHFYYNYYVYQYATGYSAAQALSSQILKEGKPAVDRYIDFLKAG
                     SSQYPIDVLKKAGVDMTSPEPIEAACKMFEEKLDEMEELLMKVKQS*"
                     /label="pepF CDS"
     gene            1155302..1157314
                     /gene="pepF"
                     /locus_tag="BSU_11540"
                     /old_locus_tag="BSU11540"
                     /label="pepF gene"
     promotor_-35    1155377..1155384
                     /Source="Nicolas_upshift_promotors"
                     /id="U933"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.802197802197802"
                     /psig="0.926073926073926"
                     /xcortree=3181
                     /SigmaFactorBS="cattcgttctcttcattactgcatatGATTTGACaaaaggca
                     gtgaaaAACCGGAAGATATTCACAACacaagtttattgagaaacagctgttttttcaa
                     t"
                     /listShort="S414"
                     /listLong="S415"
                     /label="promotor_-35"
     promotor_-10    1155399..1155418
                     /Source="Nicolas_upshift_promotors"
                     /id="U933"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.802197802197802"
                     /psig="0.926073926073926"
                     /xcortree=3181
                     /SigmaFactorBS="cattcgttctcttcattactgcatatGATTTGACaaaaggca
                     gtgaaaAACCGGAAGATATTCACAACacaagtttattgagaaacagctgttttttcaa
                     t"
                     /listShort="S414"
                     /listLong="S415"
                     /label="promotor_-10"
     upshifts        1155411
                     /Source="Nicolas_upshifts"
                     /id="U933"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.802197802197802"
                     /psig="0.926073926073926"
                     /xcortree=3181
                     /SigmaFactorBS="cattcgttctcttcattactgcatatGATTTGACaaaaggca
                     gtgaaaAACCGGAAGATATTCACAACacaagtttattgagaaacagctgttttttcaa
                     t"
                     /listShort="S414"
                     /listLong="S415"
                     /label="upshifts"
     downshifts      1157261
                     /Source="Nicolas_upshifts"
                     /id="D627"
                     /incds=0
                     /nref=98
                     /ntot=339
                     /MaxReadThrough="4.70576"
                     /MaxDrop="5.74441"
                     /score="19.0969124"
                     /energy="-15.2"
                     /TU="U933"
                     /idTUdmin="U931"
                     /TUdmin=2
                     /isTUend="TRUE"
                     /label="downshifts"
     S_feature       1157315..1157616
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1233096_1233397"
                     /HighExp="Etha, dia15, Diami, B60, M9-stat, S8, M0t90,
                     dia5, B36, T0.30H"
                     /AntisenseName="yizD"
                     /AntisenseCor="-1.29003203536192E-2"
                     /AntisenseRegPval="-0.1"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.926"
                     /TUlongSig="SigH, SigB"
                     /TUlongPSig="0.999, 0.999"
                     /label="S414"
     CDS             complement(1157352..1157519)
                     /gene="yizD"
                     /locus_tag="BSU_11549"
                     /old_locus_tag="BSU11549"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved hypothetical protein"
                     /protein_id="YP_003097703.1"
                     /db_xref="EnsemblGenomes-Gn:BSU11549"
                     /db_xref="EnsemblGenomes-Tr:CAX52593"
                     /db_xref="GOA:C0H3Y6"
                     /db_xref="UniProtKB/Swiss-Prot:C0H3Y6"
                     /translation="MMSTLISIVCIAVFFCLNILGMMHMLPLYITSPLLFLSILFTLY
                     RLNHRKTFKGF*"
                     /label="yizD CDS"
     gene            complement(1157352..1157519)
                     /gene="yizD"
                     /locus_tag="BSU_11549"
                     /old_locus_tag="BSU11549"
                     /label="yizD gene"
     downshifts      complement(1157365)
                     /Source="Nicolas_upshifts"
                     /id="D628"
                     /incds=0
                     /nref=8
                     /ntot=61
                     /MaxReadThrough="1.527"
                     /MaxDrop="5.54041"
                     /score="-4.56163992"
                     /energy="-15.2"
                     /TU="NA"
                     /idTUdmin="U934"
                     /TUdmin="-8"
                     /isTUend="TRUE"
                     /label="downshifts"
     promotor_-10    complement(1157539..1157557)
                     /Source="Nicolas_upshift_promotors"
                     /id="U934"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp=1
                     /psig=1
                     /xcortree=1166
                     /SigmaFactorBS="acaacctctatgcttaatgttcatatttttgtcacaaAACAT
                     AacgaagtgcattcacTCATATCCTTATAAGGAAAaaggacgaggaggaccgccatga
                     t"
                     /listShort="yizD"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(1157555)
                     /Source="Nicolas_upshifts"
                     /id="U934"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp=1
                     /psig=1
                     /xcortree=1166
                     /SigmaFactorBS="acaacctctatgcttaatgttcatatttttgtcacaaAACAT
                     AacgaagtgcattcacTCATATCCTTATAAGGAAAaaggacgaggaggaccgccatga
                     t"
                     /listShort="yizD"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(1157573..1157578)
                     /Source="Nicolas_upshift_promotors"
                     /id="U934"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp=1
                     /psig=1
                     /xcortree=1166
                     /SigmaFactorBS="acaacctctatgcttaatgttcatatttttgtcacaaAACAT
                     AacgaagtgcattcacTCATATCCTTATAAGGAAAaaggacgaggaggaccgccatga
                     t"
                     /listShort="yizD"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-35    1157609..1157616
                     /Source="Nicolas_upshift_promotors"
                     /id="U935"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.583416583416583"
                     /psig="0.883116883116883"
                     /xcortree=90
                     /SigmaFactorBS="gtgaatgcacttcgttatgttttgtgacaaaaatatgaacat
                     taagcatagAGGTTGTCaaaagtcgacatctTTTGTTATCATAAGGATGTGaaattga
                     t"
                     /listShort="S415"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     S_feature       1157618..1157743
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1233399_1233524"
                     /HighExp="B36, T-1.10H, nit, T-0.40H, M9-tran, LoTm, Pyr,
                     Etha, Salt, T0.30H"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.883"
                     /TUlongSig="SigA, SigH, SigB"
                     /TUlongPSig="0.926, 0.999, 0.999"
                     /label="S415"
     upshifts        1157618
                     /Source="Nicolas_upshifts"
                     /id="U935"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.583416583416583"
                     /psig="0.883116883116883"
                     /xcortree=90
                     /SigmaFactorBS="gtgaatgcacttcgttatgttttgtgacaaaaatatgaacat
                     taagcatagAGGTTGTCaaaagtcgacatctTTTGTTATCATAAGGATGTGaaattga
                     t"
                     /listShort="S415"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     misc_RNA        1157624..1157762
                     /gene="roxS"
                     /locus_tag="BSU_misc_RNA_67"
                     /product="small regulatory RNA (NO regulated)"
                     /experiment="publication(s) with functional evidences,
                     PMID:19682248, 19786493, 20511587, 20525796, 25643072,
                     28436820"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 19682248, 19786493,
                     20511587, 20525796, 25643072, 28436820; Product type n :
                     RNA"
                     /label="roxS RNA"
     gene            1157624..1157762
                     /gene="roxS"
                     /locus_tag="BSU_misc_RNA_67"
                     /label="roxS gene"
     promotor_-10    1157631..1157650
                     /Source="Nicolas_upshift_promotors"
                     /id="U935"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.583416583416583"
                     /psig="0.883116883116883"
                     /xcortree=90
                     /SigmaFactorBS="gtgaatgcacttcgttatgttttgtgacaaaaatatgaacat
                     taagcatagAGGTTGTCaaaagtcgacatctTTTGTTATCATAAGGATGTGaaattga
                     t"
                     /listShort="S415"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     downshifts      1157700
                     /Source="Nicolas_upshifts"
                     /id="D629"
                     /incds=0
                     /nref=96
                     /ntot=135
                     /MaxReadThrough="3.50613"
                     /MaxDrop="9.07209"
                     /score="5.30186633"
                     /energy="-11.6"
                     /TU="U935"
                     /idTUdmin="U933"
                     /TUdmin=89
                     /isTUend="FALSE"
                     /label="downshifts"
     CDS             complement(1157833..1158732)
                     /gene="spxH"
                     /locus_tag="BSU_11550"
                     /old_locus_tag="BSU11550"
                     /function="16.3: Control"
                     /function="16.8: Protect"
                     /experiment="publication(s) with functional evidences,
                     PMID:17293416, 17908206, 21378193, 22194450, 24942655,
                     25353645, 27191337, 22720735"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 17293416, 17908206,
                     21378193, 22194450, 24942655, 25353645, 27191337,
                     22720735; Product type f: factor"
                     /codon_start=1
                     /transl_table=11
                     /product="thiol management effector of SpxA degradation"
                     /protein_id="NP_389037.2"
                     /db_xref="EnsemblGenomes-Gn:BSU11550"
                     /db_xref="EnsemblGenomes-Tr:CAB13012"
                     /db_xref="GOA:O31606"
                     /db_xref="InterPro:IPR036249"
                     /db_xref="SubtiList:BG13137"
                     /db_xref="UniProtKB/Swiss-Prot:O31606"
                     /translation="MTNYQHELYFAHCHGHPKKPLEIYMFVDPLCPECWSLEPVIKKL
                     KIRYGRFFTLRIIASASLTALNKKRKKHLLAEAWEKIASRSGMSCDGNVWFEQDQPLS
                     SPYMAALAFKAAELQGRKAGMQFLRNMQESLFVSKKNITDENVLLEIAENTSLDLEEF
                     KKDLHSQSAVKALQCDMKIAAEMDVSVNPTLTFFNTQHEDEGLKVPGSYSYDVYEEIL
                     FEMLGDEPKPSETPPLECFIEYFRFVASKEIALVYDLSLEEVEKEMKKLAFAKKVAKV
                     EAKHGMFWKSLSTYSDEYQSCEK*"
                     /label="spxH CDS"
     gene            complement(1157833..1158732)
                     /gene="spxH"
                     /locus_tag="BSU_11550"
                     /old_locus_tag="BSU11550"
                     /label="spxH gene"
     downshifts      complement(1157864)
                     /Source="Nicolas_upshifts"
                     /id="D630"
                     /incds=0
                     /nref=185
                     /ntot=251
                     /MaxReadThrough="3.70729"
                     /MaxDrop="5.65601"
                     /score="17.9327625"
                     /energy="-13.3"
                     /TU="U937"
                     /idTUdmin="U937"
                     /TUdmin="-89"
                     /isTUend="FALSE"
                     /label="downshifts"
     promotor_-35    1158068..1158073
                     /Source="Nicolas_upshift_promotors"
                     /id="U936"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.998001998001998"
                     /psig="0.998001998001998"
                     /xcortree=1111
                     /SigmaFactorBS="ataaaacattctaaaggcggtgtttccgacggcttcggctcg
                     tcgccaAGCATCtcaaataaaatttctTCATATACATCATATGAGTagctgccaggaa
                     c"
                     /listShort="S416"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     upshifts        1158080
                     /Source="Nicolas_upshifts"
                     /id="U936"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.998001998001998"
                     /psig="0.998001998001998"
                     /xcortree=1111
                     /SigmaFactorBS="ataaaacattctaaaggcggtgtttccgacggcttcggctcg
                     tcgccaAGCATCtcaaataaaatttctTCATATACATCATATGAGTagctgccaggaa
                     c"
                     /listShort="S416"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-10    1158089..1158107
                     /Source="Nicolas_upshift_promotors"
                     /id="U936"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.998001998001998"
                     /psig="0.998001998001998"
                     /xcortree=1111
                     /SigmaFactorBS="ataaaacattctaaaggcggtgtttccgacggcttcggctcg
                     tcgccaAGCATCtcaaataaaatttctTCATATACATCATATGAGTagctgccaggaa
                     c"
                     /listShort="S416"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     S_feature       1158096..1159997
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1233877_1235778"
                     /HighExp="S6, S4, S5, S8, S3, S7, BT, B36, C30, T5.0H"
                     /AntisenseName="yjbH"
                     /AntisenseCor="-0.61019541931037402"
                     /AntisenseRegPval="-28.1"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigEF"
                     /TUshortPSig="0.998"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S416"
     CDS             complement(1158729..1159127)
                     /gene="yjbI"
                     /locus_tag="BSU_11560"
                     /old_locus_tag="BSU11560"
                     /function="16.8: Protect"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 15866723, 17293416;
                     Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative thiol management oxidoreductase
                     component"
                     /protein_id="NP_389038.1"
                     /db_xref="EnsemblGenomes-Gn:BSU11560"
                     /db_xref="EnsemblGenomes-Tr:CAB13013"
                     /db_xref="GOA:O31607"
                     /db_xref="InterPro:IPR001486"
                     /db_xref="InterPro:IPR009050"
                     /db_xref="InterPro:IPR019795"
                     /db_xref="PDB:1UX8"
                     /db_xref="SubtiList:BG13138"
                     /db_xref="UniProtKB/Swiss-Prot:O31607"
                     /translation="MGQSFNAPYEAIGEELLSQLVDTFYERVASHPLLKPIFPSDLTE
                     TARKQKQFLTQYLGGPPLYTEEHGHPMLRARHLPFPITNERADAWLSCMKDAMDHVGL
                     EGEIREFLFGRLELTARHMVNQTEAEDRSS*"
                     /label="yjbI CDS"
     gene            complement(1158729..1159127)
                     /gene="yjbI"
                     /locus_tag="BSU_11560"
                     /old_locus_tag="BSU11560"
                     /label="yjbI gene"
     S_feature       complement(1159128..1159307)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1234909_1235088_c"
                     /HighExp="Diami, dia5, dia15, Etha, H2O2, C90, LoTm, Heat,
                     Salt, M0t90"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig=1
                     /TUlongSig="SigD, SigA"
                     /TUlongPSig="1, 0.999"
                     /label="S417"
     promotor_-10    complement(1159299..1159318)
                     /Source="Nicolas_upshift_promotors"
                     /id="U937"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.98101898101898"
                     /psig=1
                     /xcortree=1912
                     /SigmaFactorBS="tccctctggtttttttgcgaagtgaaatctTACGCATTcctg
                     atttttaTGTGATATGATATGAAATACaaaccccggctgtcagccgaaatgagtcatc
                     a"
                     /listShort="S417, yjbI, yjbH"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(1159307)
                     /Source="Nicolas_upshifts"
                     /id="U937"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.98101898101898"
                     /psig=1
                     /xcortree=1912
                     /SigmaFactorBS="tccctctggtttttttgcgaagtgaaatctTACGCATTcctg
                     atttttaTGTGATATGATATGAAATACaaaccccggctgtcagccgaaatgagtcatc
                     a"
                     /listShort="S417, yjbI, yjbH"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(1159330..1159337)
                     /Source="Nicolas_upshift_promotors"
                     /id="U937"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.98101898101898"
                     /psig=1
                     /xcortree=1912
                     /SigmaFactorBS="tccctctggtttttttgcgaagtgaaatctTACGCATTcctg
                     atttttaTGTGATATGATATGAAATACaaaccccggctgtcagccgaaatgagtcatc
                     a"
                     /listShort="S417, yjbI, yjbH"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             complement(1159382..1159927)
                     /gene="cwlQ"
                     /locus_tag="BSU_11570"
                     /old_locus_tag="BSU11570"
                     /EC_number="3.2.1.-"
                     /EC_number="3.2.1.17"
                     /function="16.5: Explore"
                     /function="16.13: Shape"
                     /experiment="publication(s) with functional evidences,
                     PMID:20609359"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 20609359; Product type e:
                     enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional muramidase and murein lytic
                     transglycosylase"
                     /protein_id="NP_389039.1"
                     /db_xref="EnsemblGenomes-Gn:BSU11570"
                     /db_xref="EnsemblGenomes-Tr:CAB13014"
                     /db_xref="GOA:O31608"
                     /db_xref="InterPro:IPR000189"
                     /db_xref="InterPro:IPR008258"
                     /db_xref="InterPro:IPR023346"
                     /db_xref="SubtiList:BG13139"
                     /db_xref="UniProtKB/Swiss-Prot:O31608"
                     /translation="MLNSANTTAPSLLSAYGLNSYTSSNSGSVTKAAESTETAVADSA
                     SNKHEANQIRSGDFSIDSAIKKAADKYGVDEKLIRAVIKQESGFNAKAVSGAGAMGLM
                     QLMPSTASSLGVSNPLDPQQNVEGGTKYLKQMLDKYDGNVSMALAAYNAGPGNVDRYG
                     GIPPFQETQNYVKKITSVYYA*"
                     /label="cwlQ CDS"
     gene            complement(1159382..1159927)
                     /gene="cwlQ"
                     /locus_tag="BSU_11570"
                     /old_locus_tag="BSU11570"
                     /label="cwlQ gene"
     downshifts      complement(1159406)
                     /Source="Nicolas_upshifts"
                     /id="D631"
                     /incds=0
                     /nref=101
                     /ntot=222
                     /MaxReadThrough="4.1014"
                     /MaxDrop="5.00847"
                     /score="6.97790581"
                     /energy="-9.1"
                     /TU="U938,U939"
                     /idTUdmin="U938"
                     /TUdmin="-90"
                     /isTUend="FALSE"
                     /label="downshifts"
     S_feature       complement(1159928..1160130)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1235709_1235911_c"
                     /HighExp="T0.30H, Gly, C90, GM 10, GM 45, M0t90, Lbstat,
                     C30, Lbtran, GM 25"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigD, SigA"
                     /TUshortPSig="1, 0.999"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S418"
     CDS             complement(1160131..1160703)
                     /gene="yjbK"
                     /locus_tag="BSU_11580"
                     /old_locus_tag="BSU11580"
                     /function="16.11: Scavenge (Catabolism)"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 9642185, 12456267,
                     16905149, 20509597, 26904951, 27881678; Product type e :
                     enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative RNA/thiamine triphosphatase"
                     /protein_id="NP_389040.1"
                     /db_xref="EnsemblGenomes-Gn:BSU11580"
                     /db_xref="EnsemblGenomes-Tr:CAB13015"
                     /db_xref="GOA:O31609"
                     /db_xref="InterPro:IPR009195"
                     /db_xref="InterPro:IPR023577"
                     /db_xref="InterPro:IPR033469"
                     /db_xref="SubtiList:BG13140"
                     /db_xref="UniProtKB/Swiss-Prot:O31609"
                     /translation="MSQEIEIEFKNMLTKQEFKNIASALQLTEKDFTDQKNHYFDTDS
                     FALKQKHAALRIRRKNGKYVLTLKEPADVGLLETHQQLSEVSDLAGFSVPEGPVKDQL
                     HKLQIDTDAIQYFGSLATNRAEKETEKGLIVLDHSRYLNKEDYEIEFEAADWHEGRQA
                     FEKLLQQFSIPQRETKNKILRFYEEKRKSI*"
                     /label="yjbK CDS"
     gene            complement(1160131..1160703)
                     /gene="yjbK"
                     /locus_tag="BSU_11580"
                     /old_locus_tag="BSU11580"
                     /label="yjbK gene"
     promotor_-10    complement(1160276..1160294)
                     /Source="Nicolas_upshift_promotors"
                     /id="U938"
                     /multdbtbs="-"
                     /comp="M10"
                     /sig="SigD"
                     /pcomp=1
                     /psig=1
                     /xcortree=2803
                     /SigmaFactorBS="caaaccgtgcggaaaaagaaacagaaaaaggCTTAATAGttt
                     tagaccacaGCCGATATTTAAATAAAGAggactatgaaattgaatttgaggcggcgga
                     t"
                     /listShort="S418, yjbJ"
                     /listLong="S417, yjbI, yjbH"
                     /label="promotor_-10"
     upshifts        complement(1160285)
                     /Source="Nicolas_upshifts"
                     /id="U938"
                     /multdbtbs="-"
                     /comp="M10"
                     /sig="SigD"
                     /pcomp=1
                     /psig=1
                     /xcortree=2803
                     /SigmaFactorBS="caaaccgtgcggaaaaagaaacagaaaaaggCTTAATAGttt
                     tagaccacaGCCGATATTTAAATAAAGAggactatgaaattgaatttgaggcggcgga
                     t"
                     /listShort="S418, yjbJ"
                     /listLong="S417, yjbI, yjbH"
                     /label="upshifts"
     promotor_-35    complement(1160307..1160314)
                     /Source="Nicolas_upshift_promotors"
                     /id="U938"
                     /multdbtbs="-"
                     /comp="M10"
                     /sig="SigD"
                     /pcomp=1
                     /psig=1
                     /xcortree=2803
                     /SigmaFactorBS="caaaccgtgcggaaaaagaaacagaaaaaggCTTAATAGttt
                     tagaccacaGCCGATATTTAAATAAAGAggactatgaaattgaatttgaggcggcgga
                     t"
                     /listShort="S418, yjbJ"
                     /listLong="S417, yjbI, yjbH"
                     /label="promotor_-35"
     promotor_-10    complement(1160732..1160751)
                     /Source="Nicolas_upshift_promotors"
                     /id="U939"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.782217782217782"
                     /psig="0.999000999001"
                     /xcortree=2255
                     /SigmaFactorBS="acaaagtacagattcattttatcatatcgagctcgaTATTGA
                     TAaacctaacatctaaAGAGATAATAGTAAAAATAAgatttacagggcggaaaggaag
                     a"
                     /listShort="yjbK, S418, yjbJ"
                     /listLong="S417, yjbI, yjbH"
                     /label="promotor_-10"
     upshifts        complement(1160749)
                     /Source="Nicolas_upshifts"
                     /id="U939"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.782217782217782"
                     /psig="0.999000999001"
                     /xcortree=2255
                     /SigmaFactorBS="acaaagtacagattcattttatcatatcgagctcgaTATTGA
                     TAaacctaacatctaaAGAGATAATAGTAAAAATAAgatttacagggcggaaaggaag
                     a"
                     /listShort="yjbK, S418, yjbJ"
                     /listLong="S417, yjbI, yjbH"
                     /label="upshifts"
     promotor_-35    1160765..1160768
                     /Source="Nicolas_upshift_promotors"
                     /id="U940"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.534465534465534"
                     /psig="0.994005994005994"
                     /xcortree=2570
                     /SigmaFactorBS="ccctgtaaatcttatttttactattatctctttagatgttag
                     gtTTATcaatatcgagctcgaTATGATAAAATGAATCTGTActttgtttaaaaaagga
                     g"
                     /listShort="yjbL, yjbM, ppnKA, yjbO"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-35    complement(1160766..1160773)
                     /Source="Nicolas_upshift_promotors"
                     /id="U939"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.782217782217782"
                     /psig="0.999000999001"
                     /xcortree=2255
                     /SigmaFactorBS="acaaagtacagattcattttatcatatcgagctcgaTATTGA
                     TAaacctaacatctaaAGAGATAATAGTAAAAATAAgatttacagggcggaaaggaag
                     a"
                     /listShort="yjbK, S418, yjbJ"
                     /listLong="S417, yjbI, yjbH"
                     /label="promotor_-35"
     upshifts        1160781
                     /Source="Nicolas_upshifts"
                     /id="U940"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.534465534465534"
                     /psig="0.994005994005994"
                     /xcortree=2570
                     /SigmaFactorBS="ccctgtaaatcttatttttactattatctctttagatgttag
                     gtTTATcaatatcgagctcgaTATGATAAAATGAATCTGTActttgtttaaaaaagga
                     g"
                     /listShort="yjbL, yjbM, ppnKA, yjbO"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-10    1160784..1160803
                     /Source="Nicolas_upshift_promotors"
                     /id="U940"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.534465534465534"
                     /psig="0.994005994005994"
                     /xcortree=2570
                     /SigmaFactorBS="ccctgtaaatcttatttttactattatctctttagatgttag
                     gtTTATcaatatcgagctcgaTATGATAAAATGAATCTGTActttgtttaaaaaagga
                     g"
                     /listShort="yjbL, yjbM, ppnKA, yjbO"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     CDS             1160828..1161196
                     /gene="yjbL"
                     /locus_tag="BSU_11590"
                     /old_locus_tag="BSU11590"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms; PubMedId: 22333191; Product type e :
                     enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved protein of unknown function"
                     /protein_id="NP_389041.1"
                     /db_xref="EnsemblGenomes-Gn:BSU11590"
                     /db_xref="EnsemblGenomes-Tr:CAB13016"
                     /db_xref="InterPro:IPR020908"
                     /db_xref="SubtiList:BG13141"
                     /db_xref="UniProtKB/Swiss-Prot:O31610"
                     /translation="MQNRIEILNATLSDDQLRLACQTEGNEAERKPSGQMLVDSDHFA
                     FVYILELADSFEYVIIKEHVWPELKQAHAQKIPVVLEAGDQTIELAGLHEELEYLLEN
                     IKDNANYGEEMEEKVKRVFL*"
                     /label="yjbL CDS"
     gene            1160828..1161196
                     /gene="yjbL"
                     /locus_tag="BSU_11590"
                     /old_locus_tag="BSU11590"
                     /label="yjbL gene"
     CDS             1161225..1161860
                     /gene="relP"
                     /locus_tag="BSU_11600"
                     /old_locus_tag="BSU11600"
                     /EC_number="2.7.6.5"
                     /function="16.1: Circulate"
                     /function="16.14: Store"
                     /function="16.3: Control"
                     /experiment="publication(s) with functional evidences,
                     PMID:17714452, 18067544, 19447912, 24163341, 25331430,
                     26825398"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 17714452, 18067544,
                     19447912, 24163341, 25331430, 26825398; Product type e :
                     enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="(p)ppGpp synthetase"
                     /protein_id="NP_389042.1"
                     /db_xref="EnsemblGenomes-Gn:BSU11600"
                     /db_xref="EnsemblGenomes-Tr:CAB13017"
                     /db_xref="GOA:O31611"
                     /db_xref="InterPro:IPR007685"
                     /db_xref="PDB:5DEC"
                     /db_xref="PDB:5DED"
                     /db_xref="PDB:5F2V"
                     /db_xref="SubtiList:BG13142"
                     /db_xref="UniProtKB/Swiss-Prot:O31611"
                     /translation="MDDKQWERFLVPYRQAVEELKVKLKGIRTLYEYEDDHSPIEFVT
                     GRVKPVASILEKARRKSIPLHEIETMQDIAGLRIMCQFVDDIQIVKEMLFARKDFTVV
                     DQRDYIAEHKESGYRSYHLVVLYPLQTVSGEKHVLVEIQIRTLAMNFWATIEHSLNYK
                     YSGNIPEKVKLRLQRASEAASRLDEEMSEIRGEVQEAQAAFSRKKKGSEQQ*"
                     /label="relP CDS"
     gene            1161225..1161860
                     /gene="relP"
                     /locus_tag="BSU_11600"
                     /old_locus_tag="BSU11600"
                     /label="relP gene"
     CDS             1161879..1162679
                     /gene="ppnKA"
                     /locus_tag="BSU_11610"
                     /old_locus_tag="BSU11610"
                     /EC_number="2.7.1.23"
                     /function="16.14: Store"
                     /function="16.7: Manage energy"
                     /function="16.2: Construct biomass (Anabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:12682299, 12897004, 16233726, 16511117, 18720024,
                     24048943"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 12682299, 12897004,
                     16233726, 16511117, 18720024, 24048943; Product type e :
                     enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="inorganic polyphosphate/ATP-NAD kinase
                     (quinolate activated)"
                     /protein_id="NP_389043.1"
                     /db_xref="EnsemblGenomes-Gn:BSU11610"
                     /db_xref="EnsemblGenomes-Tr:CAB13018"
                     /db_xref="GOA:O31612"
                     /db_xref="InterPro:IPR002504"
                     /db_xref="InterPro:IPR016064"
                     /db_xref="InterPro:IPR017437"
                     /db_xref="InterPro:IPR017438"
                     /db_xref="SubtiList:BG13143"
                     /db_xref="UniProtKB/Swiss-Prot:O31612"
                     /translation="MKFAVSSKGDQVSDTLKSKIQAYLLDFDMELDENEPEIVISVGG
                     DGTLLYAFHRYSDRLDKTAFVGVHTGHLGFYADWVPHEIEKLVLAIAKTPYHTVEYPL
                     LEVIVTYHENEREERYLALNECTIKSIEGSLVADVEIKGQLFETFRGDGLCLSTPSGS
                     TAYNKALGGAIIHPSIRAIQLAEMASINNRVFRTVGSPLLLPSHHDCMIKPRNEVDFQ
                     VTIDHLTLLHKDVKSIRCQVASEKVRFARFRPFPFWKRVQDSFIGKGE*"
                     /label="ppnKA CDS"
     gene            1161879..1162679
                     /gene="ppnKA"
                     /locus_tag="BSU_11610"
                     /old_locus_tag="BSU11610"
                     /label="ppnKA gene"
     CDS             1162742..1163593
                     /gene="yjbO"
                     /locus_tag="BSU_11620"
                     /old_locus_tag="BSU11620"
                     /EC_number="5.4.99.-"
                     /function="16.8: Protect"
                     /function="16.6: Maintain"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 2b: Function from indirect experimental
                     evidences (e.g. phenotypes); Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="pseudouridylate synthase"
                     /protein_id="NP_389044.1"
                     /db_xref="EnsemblGenomes-Gn:BSU11620"
                     /db_xref="EnsemblGenomes-Tr:CAB13019"
                     /db_xref="GOA:O31613"
                     /db_xref="InterPro:IPR002942"
                     /db_xref="InterPro:IPR006145"
                     /db_xref="InterPro:IPR006224"
                     /db_xref="InterPro:IPR006225"
                     /db_xref="InterPro:IPR020103"
                     /db_xref="SubtiList:BG13144"
                     /db_xref="UniProtKB/Swiss-Prot:O31613"
                     /translation="MTVKEYAGELGISKRLLTDIKFGGGDLQINGEHVTVKYVLKEGD
                     LLIVKFPEEQVSETLLAEPVPLDILYEDEHVLVINKQPYVSSIPSREHPSGSIANGII
                     DHYQTTGVRATVHLVTRLDRDTSGIMLVAKHRFAHSILSSAQKNGLVKRRYAAVVHGR
                     MAQMEGTVDAPIGRHPDSIIERTVTPDGQKAVTHFYVTCANDDMTSVALQLETGRTHQ
                     IRVHMSYLGHPLCGDTLYGGTRQEIGRQALHSEHLSFIHPLTQENMRFHAPLPQDMSK
                     LIKGENH*"
                     /label="yjbO CDS"
     gene            1162742..1163593
                     /gene="yjbO"
                     /locus_tag="BSU_11620"
                     /old_locus_tag="BSU11620"
                     /label="yjbO gene"
     downshifts      1163552
                     /Source="Nicolas_upshifts"
                     /id="D632"
                     /incds=0
                     /nref=203
                     /ntot=256
                     /MaxReadThrough="0.25796"
                     /MaxDrop="5.73002"
                     /score="21.4914497"
                     /energy="-12.8"
                     /TU="NA"
                     /idTUdmin="U940"
                     /TUdmin=0
                     /isTUend="TRUE"
                     /label="downshifts"
     CDS             complement(1163606..1164340)
                     /gene="prpE"
                     /locus_tag="BSU_11630"
                     /old_locus_tag="BSU11630"
                     /EC_number="3.6.1.17"
                     /function="16.3: Control"
                     /function="16.6: Maintain"
                     /experiment="publication(s) with functional evidences,
                     PMID:12059787, 16740944, 21092197, 23824080, 28516732"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 12059787, 16740944,
                     21092197, 23824080, 28516732; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphorylated protein phosphatase E and
                     diadenosine-polyphosphate hydrolase"
                     /protein_id="NP_389045.1"
                     /db_xref="EnsemblGenomes-Gn:BSU11630"
                     /db_xref="EnsemblGenomes-Tr:CAB13020"
                     /db_xref="GOA:O31614"
                     /db_xref="InterPro:IPR004843"
                     /db_xref="InterPro:IPR023937"
                     /db_xref="InterPro:IPR029052"
                     /db_xref="SubtiList:BG13145"
                     /db_xref="UniProtKB/Swiss-Prot:O31614"
                     /translation="MAYDIISDIHGCYDEMTALIQKLGYTIKNGVPVHEEGRVLVFAG
                     DLTDRGPKSIEVIRFVAGAYEKGAVRYVPGNHCNKLYRYLKGNPVKVMHGLETTAAEL
                     EELSKDEKKSVSEQFMKLYETAPLYDILHNGELVVAHAGIRADDIGKYTRRVKDFVLY
                     GDVTGETYPDGRPIRRDWAAAYNGKAWVVYGHTPVKEPRKVNRTINIDTGCVFGNQLT
                     GFRFPEIETVSVPSSLPYDESRFRPI*"
                     /label="prpE CDS"
     gene            complement(1163606..1164340)
                     /gene="prpE"
                     /locus_tag="BSU_11630"
                     /old_locus_tag="BSU11630"
                     /label="prpE gene"
     downshifts      complement(1163628)
                     /Source="Nicolas_upshifts"
                     /id="D633"
                     /incds=0
                     /nref=22
                     /ntot=152
                     /MaxReadThrough="1.18091"
                     /MaxDrop="3.57735"
                     /score="3.24324561"
                     /energy="-12.8"
                     /TU="NA"
                     /idTUdmin="U938"
                     /TUdmin="-4312"
                     /isTUend="FALSE"
                     /label="downshifts"
     promotor_-35    1164462..1164466
                     /Source="Nicolas_upshift_promotors"
                     /id="U941"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.768231768231768"
                     /psig="0.996003996003996"
                     /xcortree=1820
                     /SigmaFactorBS="ttctaaacaggattaagaccttatcACTTTatttttcatcat
                     caccCTTGTTAAAATCGCGTTATGttttttaaaaatgaggttttgttctctgagtgag
                     a"
                     /listShort="S419, yjbQ, NA"
                     /listLong="tenA, tenI, thiO, thiS, thiG, thiF, thiD, fabI"
                     /label="promotor_-35"
     promotor_-10    1164483..1164502
                     /Source="Nicolas_upshift_promotors"
                     /id="U941"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.768231768231768"
                     /psig="0.996003996003996"
                     /xcortree=1820
                     /SigmaFactorBS="ttctaaacaggattaagaccttatcACTTTatttttcatcat
                     caccCTTGTTAAAATCGCGTTATGttttttaaaaatgaggttttgttctctgagtgag
                     a"
                     /listShort="S419, yjbQ, NA"
                     /listLong="tenA, tenI, thiO, thiS, thiG, thiF, thiD, fabI"
                     /label="promotor_-10"
     upshifts        1164497
                     /Source="Nicolas_upshifts"
                     /id="U941"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.768231768231768"
                     /psig="0.996003996003996"
                     /xcortree=1820
                     /SigmaFactorBS="ttctaaacaggattaagaccttatcACTTTatttttcatcat
                     caccCTTGTTAAAATCGCGTTATGttttttaaaaatgaggttttgttctctgagtgag
                     a"
                     /listShort="S419, yjbQ, NA"
                     /listLong="tenA, tenI, thiO, thiS, thiG, thiF, thiD, fabI"
                     /label="upshifts"
     S_feature       1164498..1164574
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1240279_1240355"
                     /HighExp="H2O2, Diami, dia15, Paraq, Oxctl, Heat, G180,
                     Salt, BMM, G135"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.996"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S419"
     CDS             1164575..1166419
                     /gene="kefQ"
                     /locus_tag="BSU_11640"
                     /old_locus_tag="BSU11640"
                     /function="16.1: Circulate"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 2a: Function from experimental evidences
                     in other organisms; PubMedId: 15849754, 16850406,
                     21742892, 24330391; Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="gated K+/H+ antiporter"
                     /protein_id="NP_389046.1"
                     /db_xref="EnsemblGenomes-Gn:BSU11640"
                     /db_xref="EnsemblGenomes-Tr:CAB13021"
                     /db_xref="GOA:O31615"
                     /db_xref="InterPro:IPR003148"
                     /db_xref="InterPro:IPR006037"
                     /db_xref="InterPro:IPR006153"
                     /db_xref="InterPro:IPR036291"
                     /db_xref="InterPro:IPR036721"
                     /db_xref="SubtiList:BG13146"
                     /db_xref="UniProtKB/Swiss-Prot:O31615"
                     /translation="MAHTSVASLVVVLIVAFLTPILLHRFKLSIPVVVAEIIMGLIIG
                     KSGLNLVVEGDTWLQTLSMLGFIFLMFLSGLEIDFSSFEKGKKKQFLPNGKEAPNTFA
                     AASVIFVGIFILSLLLSYGFVLAGFIQNAFLMTLIISTISLGVVVPTLKEERIMNSNI
                     GQIILLVAVIADLATMILLAVFSSLYGEDSGNMWLLMILFAAGVVLYFFGRVFKHRSF
                     VQSMSKGTIQIGTRAIFTLIIVLVALSESLGAENILGAFLAGVLVSLLSPNKELVQQL
                     DSFGYGFLIPIFFVMVGVKLDIWTLFQDKTILIMIPLLLLALLVSKIIPVMYLKKWYD
                     NRTIFASGFLLTSTLSLVIAAATIGQQLHVISTNMSGALILVAVIASIFTPICFKKLY
                     KREEQPEEKKTITFIGANQMTLPVTLELPEEEYDVRVVHVYQENAEEKLSESVFAVET
                     ISDYEHETLESLGIFETDILVVATGNEDMNADIALLAKDKGTERVIASVGSPEHEAAL
                     KEQGISIFSILLSTKTLLRALIEAPGVMKLLTNQESSLYQINMENSKYDGVILREFPL
                     TGDVIFVRIFRGVDSIVPHGDTRLKLGDRLIVTGSRGYVTDLKKTLEG*"
                     /label="kefQ CDS"
     gene            1164575..1166419
                     /gene="kefQ"
                     /locus_tag="BSU_11640"
                     /old_locus_tag="BSU11640"
                     /label="kefQ gene"
     misc_feature    complement(1164902..1164921)
                     /Source="Nicolas_upshift_promotors"
                     /id="U942"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.995004995004995"
                     /psig="0.996003996003996"
                     /xcortree=3108
                     /SigmaFactorBS="taatcagggtcatcaaaaatgcattttggataaatccggcca
                     agacgaacccataggacaagagcAATGATAAAATAAAAATACCgacgaaaataacaga
                     t"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_single_box"
                     /note="Geneious type: promotor_single_box"
     upshifts        complement(1164926)
                     /Source="Nicolas_upshifts"
                     /id="U942"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.995004995004995"
                     /psig="0.996003996003996"
                     /xcortree=3108
                     /SigmaFactorBS="taatcagggtcatcaaaaatgcattttggataaatccggcca
                     agacgaacccataggacaagagcAATGATAAAATAAAAATACCgacgaaaataacaga
                     t"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    1166421..1166428
                     /Source="Nicolas_upshift_promotors"
                     /id="U943"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.878121878121878"
                     /psig="0.999000999001"
                     /xcortree=2884
                     /SigmaFactorBS="taacggatcttaagaaaacattggaaggataaaTCTTGACCa
                     aataaggattcgTGTTAATATAGAGGTGCAGAacaattcaatatgtattcgtttaacc
                     a"
                     /listShort="NA, tenA, tenI, thiO, thiS, thiG, thiF, thiD"
                     /listLong="fabI"
                     /label="promotor_-35"
     promotor_-10    1166442..1166461
                     /Source="Nicolas_upshift_promotors"
                     /id="U943"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.878121878121878"
                     /psig="0.999000999001"
                     /xcortree=2884
                     /SigmaFactorBS="taacggatcttaagaaaacattggaaggataaaTCTTGACCa
                     aataaggattcgTGTTAATATAGAGGTGCAGAacaattcaatatgtattcgtttaacc
                     a"
                     /listShort="NA, tenA, tenI, thiO, thiS, thiG, thiF, thiD"
                     /listLong="fabI"
                     /label="promotor_-10"
     upshifts        1166448
                     /Source="Nicolas_upshifts"
                     /id="U943"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.878121878121878"
                     /psig="0.999000999001"
                     /xcortree=2884
                     /SigmaFactorBS="taacggatcttaagaaaacattggaaggataaaTCTTGACCa
                     aataaggattcgTGTTAATATAGAGGTGCAGAacaattcaatatgtattcgtttaacc
                     a"
                     /listShort="NA, tenA, tenI, thiO, thiS, thiG, thiF, thiD"
                     /listLong="fabI"
                     /label="upshifts"
     misc_RNA        1166481..1166589
                     /gene="tswA"
                     /locus_tag="BSU_misc_RNA_14"
                     /product="thiamine pyrophosphate riboswitch"
                     /note="Evidence 1c: Function from experimental evidences
                     in the studied genus; PubMedId: 11470904, 12410317,
                     15862294, 16728979, 16962976, 17307816, 18179415,
                     18776013; Product type n: RNA"
                     /function="16.3: Control"
                     /label="tswA RNA"
     gene            1166481..1166589
                     /gene="tswA"
                     /locus_tag="BSU_misc_RNA_14"
                     /label="tswA gene"
     downshifts      1166584
                     /Source="Nicolas_upshifts"
                     /id="D634"
                     /incds=0
                     /nref=20
                     /ntot=84
                     /MaxReadThrough="7.67021"
                     /MaxDrop="5.27759"
                     /score="34.8346124"
                     /energy="-12.5"
                     /TU="U943"
                     /idTUdmin="U941"
                     /TUdmin="-4"
                     /isTUend="TRUE"
                     /label="downshifts"
     CDS             1166668..1167378
                     /gene="tenA"
                     /locus_tag="BSU_11650"
                     /old_locus_tag="BSU11650"
                     /EC_number="3.5.99.2"
                     /function="4.11: Thiamine"
                     /function="16.11: Scavenge (Catabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:15709744, 15858269, 16356850, 17618314, 18054064,
                     24311574"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 15709744, 15858269,
                     16356850, 17618314, 18054064, 24311574; Product type e :
                     enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="thiaminase II"
                     /protein_id="NP_389047.1"
                     /db_xref="EnsemblGenomes-Gn:BSU11650"
                     /db_xref="EnsemblGenomes-Tr:CAB13022"
                     /db_xref="GOA:P25052"
                     /db_xref="InterPro:IPR004305"
                     /db_xref="InterPro:IPR016084"
                     /db_xref="InterPro:IPR027574"
                     /db_xref="PDB:1TO9"
                     /db_xref="PDB:1TYH"
                     /db_xref="PDB:1YAF"
                     /db_xref="PDB:1YAK"
                     /db_xref="PDB:2QCX"
                     /db_xref="SubtiList:BG10791"
                     /db_xref="UniProtKB/Swiss-Prot:P25052"
                     /translation="MKFSEECRSAAAEWWEGSFVHPFVQGIGDGTLPIDRFKYYVLQD
                     SYYLTHFAKVQSFGAAYAKDLYTTGRMASHAQGTYEAEMALHREFAELLEISEEERKA
                     FKPSPTAYSYTSHMYRSVLSGNFAEILAALLPCYWLYYEVGEKLLHCDPGHPIYQKWI
                     GTYGGDWFRQQVEEQINRFDELAENSTEEVRAKMKENFVISSYYEYQFWGMAYRKEGW
                     SDSAIKEVEECGASRHNG*"
                     /label="tenA CDS"
     gene            1166668..1167378
                     /gene="tenA"
                     /locus_tag="BSU_11650"
                     /old_locus_tag="BSU11650"
                     /label="tenA gene"
     CDS             1167353..1167970
                     /gene="tenI"
                     /locus_tag="BSU_11660"
                     /old_locus_tag="BSU11660"
                     /EC_number="5.3.99.10"
                     /function="16.3: Control"
                     /experiment="publication(s) with functional evidences,
                     PMID:15709744, 15858269, 16356850, 21534620"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 15709744, 15858269,
                     16356850, 21534620; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="thiazole tautomerase"
                     /protein_id="NP_389048.1"
                     /db_xref="EnsemblGenomes-Gn:BSU11660"
                     /db_xref="EnsemblGenomes-Tr:CAB13023"
                     /db_xref="GOA:P25053"
                     /db_xref="InterPro:IPR013785"
                     /db_xref="InterPro:IPR022998"
                     /db_xref="InterPro:IPR036206"
                     /db_xref="PDB:1YAD"
                     /db_xref="PDB:3QH2"
                     /db_xref="SubtiList:BG10792"
                     /db_xref="UniProtKB/Swiss-Prot:P25053"
                     /translation="MELHAITDDSKPVEELARIIITIQNEVDFIHIRERSKSAADILK
                     LLDLIFEGGIDKRKLVMNGRVDIALFSTIHRVQLPSGSFSPKQIRARFPHLHIGRSVH
                     SLEEAVQAEKEDADYVLFGHVFETDCKKGLEGRGVSLLSDIKQRISIPVIAIGGMTPD
                     RLRDVKQAGADGIAVMSGIFSSAEPLEAARRYSRKLKEMRYEKAL*"
                     /label="tenI CDS"
     gene            1167353..1167970
                     /gene="tenI"
                     /locus_tag="BSU_11660"
                     /old_locus_tag="BSU11660"
                     /label="tenI gene"
     CDS             1167954..1169063
                     /gene="thiO"
                     /locus_tag="BSU_11670"
                     /old_locus_tag="BSU11670"
                     /EC_number="1.4.3.19"
                     /function="16.2: Construct biomass (Anabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:9827558, 11744710, 12627963, 15105420, 19751796,
                     26443755"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 9827558, 11744710,
                     12627963, 15105420, 19751796, 26443755; Product type e :
                     enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent glycine oxidase"
                     /protein_id="NP_389049.1"
                     /db_xref="EnsemblGenomes-Gn:BSU11670"
                     /db_xref="EnsemblGenomes-Tr:CAB13024"
                     /db_xref="GOA:O31616"
                     /db_xref="InterPro:IPR006076"
                     /db_xref="InterPro:IPR012727"
                     /db_xref="InterPro:IPR036188"
                     /db_xref="PDB:1NG3"
                     /db_xref="PDB:1NG4"
                     /db_xref="PDB:1RYI"
                     /db_xref="PDB:3IF9"
                     /db_xref="SubtiList:BG13147"
                     /db_xref="UniProtKB/Swiss-Prot:O31616"
                     /translation="MKRHYEAVVIGGGIIGSAIAYYLAKENKNTALFESGTMGGRTTS
                     AAAGMLGAHAECEERDAFFDFAMHSQRLYKGLGEELYALSGVDIRQHNGGMFKLAFSE
                     EDVLQLRQMDDLDSVSWYSKEEVLEKEPYASGDIFGASFIQDDVHVEPYFVCKAYVKA
                     AKMLGAEIFEHTPVLHVERDGEALFIKTPSGDVWANHVVVASGVWSGMFFKQLGLNNA
                     FLPVKGECLSVWNDDIPLTKTLYHDHCYIVPRKSGRLVVGATMKPGDWSETPDLGGLE
                     SVMKKAKTMLPAIQNMKVDRFWAGLRPGTKDGKPYIGRHPEDSRILFAAGHFRNGILL
                     APATGALISDLIMNKEVNQDWLHAFRIDRKEAVQI*"
                     /label="thiO CDS"
     gene            1167954..1169063
                     /gene="thiO"
                     /locus_tag="BSU_11670"
                     /old_locus_tag="BSU11670"
                     /label="thiO gene"
     CDS             1169063..1169263
                     /gene="thiS"
                     /locus_tag="BSU_11680"
                     /old_locus_tag="BSU11680"
                     /function="16.2: Construct biomass (Anabolism)"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 2a: Function from experimental evidences
                     in other organisms; PubMedId: 10939241, 14567704,
                     14757766, 15489164, 22616866, 26443755; Product type c :
                     carrier"
                     /codon_start=1
                     /transl_table=11
                     /product="sulfur carrier for synthesis of
                     hydroxyethylthiazole phosphate"
                     /protein_id="NP_389050.1"
                     /db_xref="EnsemblGenomes-Gn:BSU11680"
                     /db_xref="EnsemblGenomes-Tr:CAB13025"
                     /db_xref="GOA:O31617"
                     /db_xref="InterPro:IPR003749"
                     /db_xref="InterPro:IPR010035"
                     /db_xref="InterPro:IPR012675"
                     /db_xref="InterPro:IPR016155"
                     /db_xref="PDB:1TYG"
                     /db_xref="SubtiList:BG13148"
                     /db_xref="UniProtKB/Swiss-Prot:O31617"
                     /translation="MLQLNGKDVKWKKDTGTIQDLLASYQLENKIVIVERNKEIIGKE
                     RYHEVELCDRDVIEIVHFVGGG*"
                     /label="thiS CDS"
     gene            1169063..1169263
                     /gene="thiS"
                     /locus_tag="BSU_11680"
                     /old_locus_tag="BSU11680"
                     /label="thiS gene"
     CDS             1169260..1170030
                     /gene="thiG"
                     /locus_tag="BSU_11690"
                     /old_locus_tag="BSU11690"
                     /EC_number="2.8.1.10"
                     /function="16.2: Construct biomass (Anabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:10939241, 12627963, 14567704, 14757766, 15489164,
                     22938038"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 10939241, 12627963,
                     14567704, 14757766, 15489164, 22938038; Product type e :
                     enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxyethylthiazole phosphate synthetase
                     (thiamine biosynthesis)"
                     /protein_id="NP_389051.1"
                     /db_xref="EnsemblGenomes-Gn:BSU11690"
                     /db_xref="EnsemblGenomes-Tr:CAB13026"
                     /db_xref="GOA:O31618"
                     /db_xref="InterPro:IPR008867"
                     /db_xref="InterPro:IPR013785"
                     /db_xref="InterPro:IPR033983"
                     /db_xref="PDB:1TYG"
                     /db_xref="PDB:1XM3"
                     /db_xref="SubtiList:BG13149"
                     /db_xref="UniProtKB/Swiss-Prot:O31618"
                     /translation="MSMLTIGGKSFQSRLLLGTGKYPSFDIQKEAVAVSESDILTFAV
                     RRMNIFEASQPNFLEQLDLSKYTLLPNTAGASTAEEAVRIARLAKASGLCDMIKVEVI
                     GCSRSLLPDPVETLKASEQLLEEGFIVLPYTSDDVVLARKLEELGVHAIMPGASPIGS
                     GQGILNPLNLSFIIEQAKVPVIVDAGIGSPKDAAYAMELGADGVLLNTAVSGADDPVK
                     MARAMKLAVEAGRLSYEAGRIPLKQYGTASSPGEGLPV*"
                     /label="thiG CDS"
     gene            1169260..1170030
                     /gene="thiG"
                     /locus_tag="BSU_11690"
                     /old_locus_tag="BSU11690"
                     /label="thiG gene"
     CDS             1170027..1171037
                     /gene="thiF"
                     /locus_tag="BSU_11700"
                     /old_locus_tag="BSU11700"
                     /EC_number="2.7.7.73"
                     /function="16.2: Construct biomass (Anabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:10939241, 14567704, 14757766, 15489164, 16388576,
                     26443755"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 10939241, 14567704,
                     14757766, 15489164, 16388576, 26443755; Product type e :
                     enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="adenylate transferase and sulfur transferase
                     (thiamine biosynthesis)"
                     /protein_id="NP_389052.1"
                     /db_xref="EnsemblGenomes-Gn:BSU11700"
                     /db_xref="EnsemblGenomes-Tr:CAB13027"
                     /db_xref="GOA:O31619"
                     /db_xref="InterPro:IPR000594"
                     /db_xref="InterPro:IPR035985"
                     /db_xref="SubtiList:BG13150"
                     /db_xref="UniProtKB/Swiss-Prot:O31619"
                     /translation="MTGRYSRQELFAPIGPSGQKKLKEARAVIIGAGALGTASAEMLV
                     RAGVGSVKIADRDYVEWSNLQRQQLYTEDDVKKEMPKAAAAERRLRSINSDVDVTGLV
                     MDVTAENIFELIRDASIIVDAADNFETRLIVNDAAVKEGIPFLYGACVGSYGLTFTVV
                     PGSTPCLHCLLDALPIGGATCDTAGIISPAVLQVAVFQVTDALKLLTGEECEPVLRSF
                     DLWKNERSEVRAASLKHDACPSCGTKDFPFLSYENQTKAAVLCGRNTVQIRSSITKEA
                     DLEALAGQLRQAGLEVAANPYLISCRSDDMKMVLFRDGRALIHGTNDIARAKSIYHKW
                     IG*"
                     /label="thiF CDS"
     gene            1170027..1171037
                     /gene="thiF"
                     /locus_tag="BSU_11700"
                     /old_locus_tag="BSU11700"
                     /label="thiF gene"
     CDS             1171056..1171871
                     /gene="thiD"
                     /locus_tag="BSU_11710"
                     /old_locus_tag="BSU11710"
                     /EC_number="2.7.4.7"
                     /EC_number="2.7.1.49"
                     /function="16.11: Scavenge (Catabolism)"
                     /function="16.2: Construct biomass (Anabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:10939241, 12627963, 14973012, 16952958, 17012797,
                     26443755"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 10939241, 12627963,
                     14973012, 16952958, 17012797, 26443755; Product type e :
                     enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphomethylpyrimidine kinase,
                     4-amino-5-hydroxymethyl-2-methylpyrimidine and
                     4-amino-5-hydroxymethyl-2-methylpyrimidine pyrophosphate
                     kinase"
                     /protein_id="NP_389053.1"
                     /db_xref="EnsemblGenomes-Gn:BSU11710"
                     /db_xref="EnsemblGenomes-Tr:CAB13028"
                     /db_xref="GOA:O31620"
                     /db_xref="InterPro:IPR004399"
                     /db_xref="InterPro:IPR013749"
                     /db_xref="InterPro:IPR029056"
                     /db_xref="SubtiList:BG13151"
                     /db_xref="UniProtKB/Swiss-Prot:O31620"
                     /translation="MSIYKALTIAGSDSGGGAGIQADIKTFQELDVFGMSAITAVTAQ
                     NTLGVHGVHPLTVETLRQQIDAVAEDLRPDAVKTGMLWNADMIEEVARKIDEYGFNRV
                     IVDPVMIAKGGASLLRDESVATLKELLIPRSYAITPNVPEAETLTGMTISSLDDRKKA
                     AEQLVKMGAQHVIIKGGHQPEDNHITDLLFDGSMFMQITHPYINTKHTHGTGCTFAAA
                     LTAQTAKGDSIHQAFEVAANFVREAVENTLGIGSGHGPTNHFAFKRNSLNTSR*"
                     /label="thiD CDS"
     gene            1171056..1171871
                     /gene="thiD"
                     /locus_tag="BSU_11710"
                     /old_locus_tag="BSU11710"
                     /label="thiD gene"
     downshifts      1171845
                     /Source="Nicolas_upshifts"
                     /id="D635"
                     /incds=0
                     /nref=128
                     /ntot=172
                     /MaxReadThrough="3.33485"
                     /MaxDrop="5.0154"
                     /score="3.40314581"
                     /energy="-14.8"
                     /TU="U943"
                     /idTUdmin="U943"
                     /TUdmin="-89"
                     /isTUend="FALSE"
                     /label="downshifts"
     promotor_-35    1171918..1171924
                     /Source="Nicolas_upshift_promotors"
                     /id="U944"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.619380619380619"
                     /psig=1
                     /xcortree=2189
                     /SigmaFactorBS="gtgatctcttttgcgtttgctacggtatgcgCTTTTCAtctg
                     gacaaggtTATGATATGATAGGAATTAAgatcaggtactaatactatgtctttattaa
                     a"
                     /listShort="fabI, cotO"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    1171937..1171956
                     /Source="Nicolas_upshift_promotors"
                     /id="U944"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.619380619380619"
                     /psig=1
                     /xcortree=2189
                     /SigmaFactorBS="gtgatctcttttgcgtttgctacggtatgcgCTTTTCAtctg
                     gacaaggtTATGATATGATAGGAATTAAgatcaggtactaatactatgtctttattaa
                     a"
                     /listShort="fabI, cotO"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        1171947
                     /Source="Nicolas_upshifts"
                     /id="U944"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.619380619380619"
                     /psig=1
                     /xcortree=2189
                     /SigmaFactorBS="gtgatctcttttgcgtttgctacggtatgcgCTTTTCAtctg
                     gacaaggtTATGATATGATAGGAATTAAgatcaggtactaatactatgtctttattaa
                     a"
                     /listShort="fabI, cotO"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             1172007..1172783
                     /gene="fabI"
                     /locus_tag="BSU_11720"
                     /old_locus_tag="BSU11720"
                     /EC_number="1.3.1.9"
                     /function="16.2: Construct biomass (Anabolism)"
                     /function="16.11: Scavenge (Catabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:11007778, 15105103, 21185310, 25355936"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 11007778, 15105103,
                     21185310, 25355936; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="enoyl-acyl carrier protein reductase"
                     /protein_id="NP_389054.2"
                     /db_xref="EnsemblGenomes-Gn:BSU11720"
                     /db_xref="EnsemblGenomes-Tr:CAB13029"
                     /db_xref="GOA:P54616"
                     /db_xref="InterPro:IPR002347"
                     /db_xref="InterPro:IPR014358"
                     /db_xref="InterPro:IPR036291"
                     /db_xref="PDB:3OIF"
                     /db_xref="PDB:3OIG"
                     /db_xref="SubtiList:BG13152"
                     /db_xref="UniProtKB/Swiss-Prot:P54616"
                     /translation="MNFSLEGRNIVVMGVANKRSIAWGIARSLHEAGARLIFTYAGER
                     LEKSVHELAGTLDRNDSIILPCDVTNDAEIETCFASIKEQVGVIHGIAHCIAFANKEE
                     LVGEYLNTNRDGFLLAHNISSYSLTAVVKAARPMMTEGGSIVTLTYLGGELVMPNYNV
                     MGVAKASLDASVKYLAADLGKENIRVNSISAGPIRTLSAKGISDFNSILKDIEERAPL
                     RRTTTPEEVGDTAAFLFSDMSRGITGENLHVDSGFHITAR*"
                     /label="fabI CDS"
     gene            1172007..1172783
                     /gene="fabI"
                     /locus_tag="BSU_11720"
                     /old_locus_tag="BSU11720"
                     /label="fabI gene"
     downshifts      1172772
                     /Source="Nicolas_upshifts"
                     /id="D636"
                     /incds=0
                     /nref=229
                     /ntot=313
                     /MaxReadThrough="3.12901"
                     /MaxDrop="6.64182"
                     /score="33.5478109"
                     /energy="-11.8"
                     /TU="U944"
                     /idTUdmin="U944"
                     /TUdmin="-416"
                     /isTUend="FALSE"
                     /label="downshifts"
     promotor_-35    1172831..1172836
                     /Source="Nicolas_upshift_promotors"
                     /id="U945"
                     /multdbtbs="SigE"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.968031968031968"
                     /psig="0.968031968031968"
                     /xcortree=1095
                     /SigmaFactorBS="tcaagcaatcccgaatagggattgcttttttatttCTTCTGa
                     ttttcagctttctgTCATATAGATAGAATATGAcacaatcggagggatgaagatgtct
                     a"
                     /listShort="cotO"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    1172852..1172870
                     /Source="Nicolas_upshift_promotors"
                     /id="U945"
                     /multdbtbs="SigE"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.968031968031968"
                     /psig="0.968031968031968"
                     /xcortree=1095
                     /SigmaFactorBS="tcaagcaatcccgaatagggattgcttttttatttCTTCTGa
                     ttttcagctttctgTCATATAGATAGAATATGAcacaatcggagggatgaagatgtct
                     a"
                     /listShort="cotO"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        1172856
                     /Source="Nicolas_upshifts"
                     /id="U945"
                     /multdbtbs="SigE"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.968031968031968"
                     /psig="0.968031968031968"
                     /xcortree=1095
                     /SigmaFactorBS="tcaagcaatcccgaatagggattgcttttttatttCTTCTGa
                     ttttcagctttctgTCATATAGATAGAATATGAcacaatcggagggatgaagatgtct
                     a"
                     /listShort="cotO"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-10    complement(1172868..1172882)
                     /Source="Nicolas_upshift_promotors"
                     /id="U946"
                     /multdbtbs="-"
                     /comp="M15"
                     /sig="Sig-"
                     /pcomp="0.997002997002997"
                     /psig="0.001998001998002"
                     /xcortree=1241
                     /SigmaFactorBS="gagcggttttttatccgcgtttcttttcttattaGACATctt
                     catcCCTCCGATTGTGTCAtattctatctatatgacagaaagctgaaaatcagaagaa
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(1172868)
                     /Source="Nicolas_upshifts"
                     /id="U946"
                     /multdbtbs="-"
                     /comp="M15"
                     /sig="Sig-"
                     /pcomp="0.997002997002997"
                     /psig="0.001998001998002"
                     /xcortree=1241
                     /SigmaFactorBS="gagcggttttttatccgcgtttcttttcttattaGACATctt
                     catcCCTCCGATTGTGTCAtattctatctatatgacagaaagctgaaaatcagaagaa
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             1172884..1173567
                     /gene="cotO"
                     /locus_tag="BSU_11730"
                     /old_locus_tag="BSU11730"
                     /function="16.13: Shape"
                     /function="16.5: Explore"
                     /experiment="publication(s) with functional evidences,
                     PMID:16321932"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 16321932; Product type
                     cp: cell process"
                     /codon_start=1
                     /transl_table=11
                     /product="spore outer coat protein"
                     /protein_id="NP_389055.1"
                     /db_xref="EnsemblGenomes-Gn:BSU11730"
                     /db_xref="EnsemblGenomes-Tr:CAB13030"
                     /db_xref="GOA:O31622"
                     /db_xref="InterPro:IPR025439"
                     /db_xref="SubtiList:BG13153"
                     /db_xref="UniProtKB/Swiss-Prot:O31622"
                     /translation="MKMSNKKRNADKKPLMYIVQPDYAETTRSSMQEIVIKRKADKPA
                     PPKAEEKPAYHEKQQEEAVAQDVLQEDQKPAAEPVSQQTQEAREPENIKSQEEQKAEP
                     QAVEETVEHEPPKAEKKEEPALEARKPEKEPEAVHSADKAEEKAPPARKVKKPMSKMT
                     IHEKIDFLTKLPHNMPRALCLIEANGRTYRGVIVGRRNDSVLLRTTGNGAPTELAIDD
                     ITSLHPLGF*"
                     /label="cotO CDS"
     gene            1172884..1173567
                     /gene="cotO"
                     /locus_tag="BSU_11730"
                     /old_locus_tag="BSU11730"
                     /label="cotO gene"
     promotor_-35    complement(1172890..1172894)
                     /Source="Nicolas_upshift_promotors"
                     /id="U946"
                     /multdbtbs="-"
                     /comp="M15"
                     /sig="Sig-"
                     /pcomp="0.997002997002997"
                     /psig="0.001998001998002"
                     /xcortree=1241
                     /SigmaFactorBS="gagcggttttttatccgcgtttcttttcttattaGACATctt
                     catcCCTCCGATTGTGTCAtattctatctatatgacagaaagctgaaaatcagaagaa
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     downshifts      1173562
                     /Source="Nicolas_upshifts"
                     /id="D637"
                     /incds=0
                     /nref=4
                     /ntot=40
                     /MaxReadThrough="3.37645"
                     /MaxDrop="4.6587"
                     /score="18.0229289"
                     /energy="-13.4"
                     /TU="U945"
                     /idTUdmin="U945"
                     /TUdmin="-66"
                     /isTUend="FALSE"
                     /label="downshifts"
     downshifts      1173650
                     /Source="Nicolas_upshifts"
                     /id="D638"
                     /incds=0
                     /nref=1
                     /ntot=29
                     /MaxReadThrough="2.44926"
                     /MaxDrop="4.55934"
                     /score="18.0229289"
                     /energy="-13.4"
                     /TU="NA"
                     /idTUdmin="U945"
                     /TUdmin=22
                     /isTUend="TRUE"
                     /label="downshifts"
     CDS             complement(1173661..1174107)
                     /gene="cotZ"
                     /locus_tag="BSU_11740"
                     /old_locus_tag="BSU11740"
                     /function="16.13: Shape"
                     /function="16.8: Protect"
                     /function="16.5: Explore"
                     /experiment="publication(s) with functional evidences,
                     PMID:7519271, 8509331, 19933362, 26341943, 27320701"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 7519271, 8509331,
                     19933362, 26341943, 27320701; Product type s: structure"
                     /codon_start=1
                     /transl_table=11
                     /product="spore coat protein (insoluble fraction, crust
                     layer)"
                     /protein_id="NP_389056.1"
                     /db_xref="EnsemblGenomes-Gn:BSU11740"
                     /db_xref="EnsemblGenomes-Tr:CAB13031"
                     /db_xref="GOA:Q08312"
                     /db_xref="InterPro:IPR019593"
                     /db_xref="SubtiList:BG10499"
                     /db_xref="UniProtKB/Swiss-Prot:Q08312"
                     /translation="MSQKTSSCVREAVENIEDLQNAVEEDCPTGCHSKLLSVSHSLGD
                     TVPFAIFTSKSTPLVAFGNVGELDNGPCFNTVFFRVERVHGSCATLSLLIAFDEHKHI
                     LDFTDKDTVCEVFRLEKTNYCIEVDLDCFCAINCLNPRLINRTHHH*"
                     /label="cotZ CDS"
     gene            complement(1173661..1174107)
                     /gene="cotZ"
                     /locus_tag="BSU_11740"
                     /old_locus_tag="BSU11740"
                     /label="cotZ gene"
     downshifts      complement(1173682)
                     /Source="Nicolas_upshifts"
                     /id="D639"
                     /incds=0
                     /nref=7
                     /ntot=50
                     /MaxReadThrough="8.44444"
                     /MaxDrop="7.17581"
                     /score="2.03943557"
                     /energy="-9.3"
                     /TU="U949"
                     /idTUdmin="U950"
                     /TUdmin=0
                     /isTUend="TRUE"
                     /label="downshifts"
     S_feature       complement(1174108..1174234)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1249889_1250015_c"
                     /HighExp="S8, S7, S6, BT, S5, B36, G/S, Pyr, B60, SMMPr"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigK, SigEF"
                     /TUshortPSig="1, 0.993"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S420"
     CDS             complement(1174235..1174723)
                     /gene="cotY"
                     /locus_tag="BSU_11750"
                     /old_locus_tag="BSU11750"
                     /function="16.13: Shape"
                     /function="16.8: Protect"
                     /function="16.5: Explore"
                     /experiment="publication(s) with functional evidences,
                     PMID:7519271, 8509331, 14766913, 26341943, 26821119"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 7519271, 8509331,
                     14766913, 26341943, 26821119; Product type cp: cell
                     process"
                     /codon_start=1
                     /transl_table=11
                     /product="outer spore coat protein (crust layer,
                     insolublefraction)"
                     /protein_id="NP_389057.1"
                     /db_xref="EnsemblGenomes-Gn:BSU11750"
                     /db_xref="EnsemblGenomes-Tr:CAB13032"
                     /db_xref="GOA:Q08311"
                     /db_xref="InterPro:IPR019593"
                     /db_xref="SubtiList:BG10498"
                     /db_xref="UniProtKB/Swiss-Prot:Q08311"
                     /translation="MSCGKTHGRHENCVCDAVEKILAEQEAVEEQCPTGCYTNLLNPT
                     IAGKDTIPFLVFDKKGGLFSTFGNVGGFVDDMQCFESIFFRVEKLCDCCATLSILRPV
                     DVKGDTLSVCHPCDPDFFGLEKTDFCIEVDLGCFCAIQCLSPELVDRTSPHKDKKHHH
                     NG*"
                     /label="cotY CDS"
     gene            complement(1174235..1174723)
                     /gene="cotY"
                     /locus_tag="BSU_11750"
                     /old_locus_tag="BSU11750"
                     /label="cotY gene"
     promotor_-35    1174403..1174409
                     /Source="Nicolas_upshift_promotors"
                     /id="U947"
                     /multdbtbs="-"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp="0.53046953046953"
                     /psig="0.653346653346653"
                     /xcortree=1630
                     /SigmaFactorBS="agggtggcaaacacttaaggtATCGCCTttgacatcgaccgg
                     GCGTAAAATAGACAGTGTTGcacagcaatcgcataatttttcgacgcggaagaaaatg
                     g"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    1174424..1174443
                     /Source="Nicolas_upshift_promotors"
                     /id="U947"
                     /multdbtbs="-"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp="0.53046953046953"
                     /psig="0.653346653346653"
                     /xcortree=1630
                     /SigmaFactorBS="agggtggcaaacacttaaggtATCGCCTttgacatcgaccgg
                     GCGTAAAATAGACAGTGTTGcacagcaatcgcataatttttcgacgcggaagaaaatg
                     g"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        1174442
                     /Source="Nicolas_upshifts"
                     /id="U947"
                     /multdbtbs="-"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp="0.53046953046953"
                     /psig="0.653346653346653"
                     /xcortree=1630
                     /SigmaFactorBS="agggtggcaaacacttaaggtATCGCCTttgacatcgaccgg
                     GCGTAAAATAGACAGTGTTGcacagcaatcgcataatttttcgacgcggaagaaaatg
                     g"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    1174719..1174723
                     /Source="Nicolas_upshift_promotors"
                     /id="U948"
                     /multdbtbs="-"
                     /comp="M15"
                     /sig="Sig-"
                     /pcomp="0.997002997002997"
                     /psig="0.002997002997003"
                     /xcortree=1244
                     /SigmaFactorBS="tctcatgccggccatgggtttttccgcagCTCATtgatttca
                     GCTCCTTCTTTATAGggtatttgactttagtccttaacaacatatgtacccgtgcccc
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    1174732..1174746
                     /Source="Nicolas_upshift_promotors"
                     /id="U948"
                     /multdbtbs="-"
                     /comp="M15"
                     /sig="Sig-"
                     /pcomp="0.997002997002997"
                     /psig="0.002997002997003"
                     /xcortree=1244
                     /SigmaFactorBS="tctcatgccggccatgggtttttccgcagCTCATtgatttca
                     GCTCCTTCTTTATAGggtatttgactttagtccttaacaacatatgtacccgtgcccc
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        1174750
                     /Source="Nicolas_upshifts"
                     /id="U948"
                     /multdbtbs="-"
                     /comp="M15"
                     /sig="Sig-"
                     /pcomp="0.997002997002997"
                     /psig="0.002997002997003"
                     /xcortree=1244
                     /SigmaFactorBS="tctcatgccggccatgggtttttccgcagCTCATtgatttca
                     GCTCCTTCTTTATAGggtatttgactttagtccttaacaacatatgtacccgtgcccc
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-10    complement(1174760..1174779)
                     /Source="Nicolas_upshift_promotors"
                     /id="U949"
                     /multdbtbs="SigK"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp=1
                     /psig=1
                     /xcortree=1280
                     /SigmaFactorBS="tattttccaagcatatgatgaatatatagacgttcACCCACA
                     CCAagtggggcacgggTACATATGTTGTTAAGGACTaaagtcaaataccctataaaga
                     a"
                     /listShort="cotY, S420, cotZ"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(1174777)
                     /Source="Nicolas_upshifts"
                     /id="U949"
                     /multdbtbs="SigK"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp=1
                     /psig=1
                     /xcortree=1280
                     /SigmaFactorBS="tattttccaagcatatgatgaatatatagacgttcACCCACA
                     CCAagtggggcacgggTACATATGTTGTTAAGGACTaaagtcaaataccctataaaga
                     a"
                     /listShort="cotY, S420, cotZ"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(1174793..1174802)
                     /Source="Nicolas_upshift_promotors"
                     /id="U949"
                     /multdbtbs="SigK"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp=1
                     /psig=1
                     /xcortree=1280
                     /SigmaFactorBS="tattttccaagcatatgatgaatatatagacgttcACCCACA
                     CCAagtggggcacgggTACATATGTTGTTAAGGACTaaagtcaaataccctataaaga
                     a"
                     /listShort="cotY, S420, cotZ"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    complement(1174809..1174827)
                     /Source="Nicolas_upshift_promotors"
                     /id="U950"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.993006993006993"
                     /psig="0.993006993006993"
                     /xcortree=1006
                     /SigmaFactorBS="cttgtcctctaggacctaaaagcagagctaaaaacgctCTGC
                     TTtttcttattttccaaGCATATGATGAATATATAGacgttcacccacaccaagtggg
                     g"
                     /listShort="cotY, S420, cotZ"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(1174826)
                     /Source="Nicolas_upshifts"
                     /id="U950"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.993006993006993"
                     /psig="0.993006993006993"
                     /xcortree=1006
                     /SigmaFactorBS="cttgtcctctaggacctaaaagcagagctaaaaacgctCTGC
                     TTtttcttattttccaaGCATATGATGAATATATAGacgttcacccacaccaagtggg
                     g"
                     /listShort="cotY, S420, cotZ"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(1174843..1174848)
                     /Source="Nicolas_upshift_promotors"
                     /id="U950"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.993006993006993"
                     /psig="0.993006993006993"
                     /xcortree=1006
                     /SigmaFactorBS="cttgtcctctaggacctaaaagcagagctaaaaacgctCTGC
                     TTtttcttattttccaaGCATATGATGAATATATAGacgttcacccacaccaagtggg
                     g"
                     /listShort="cotY, S420, cotZ"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     downshifts      1174860
                     /Source="Nicolas_upshifts"
                     /id="D640"
                     /incds=0
                     /nref=1
                     /ntot=14
                     /MaxReadThrough="1.28604"
                     /MaxDrop="4.18677"
                     /score="-9.76125107"
                     /energy="-10.4"
                     /TU="NA"
                     /idTUdmin="U948"
                     /TUdmin=22
                     /isTUend="TRUE"
                     /label="downshifts"
     CDS             complement(1174875..1175393)
                     /gene="cotX"
                     /locus_tag="BSU_11760"
                     /old_locus_tag="BSU11760"
                     /function="16.13: Shape"
                     /function="16.8: Protect"
                     /function="16.5: Explore"
                     /experiment="publication(s) with functional evidences,
                     PMID:7519271, 8509331, 10400595, 10788508, 12031481,
                     19304857, 26821119"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 7519271, 8509331,
                     10400595, 10788508, 12031481, 19304857, 26821119; Product
                     type cp: cell process"
                     /codon_start=1
                     /transl_table=11
                     /product="spore coat protein (insoluble fraction)"
                     /protein_id="NP_389058.1"
                     /db_xref="EnsemblGenomes-Gn:BSU11760"
                     /db_xref="EnsemblGenomes-Tr:CAB13033"
                     /db_xref="GOA:Q08313"
                     /db_xref="InterPro:IPR011428"
                     /db_xref="SubtiList:BG10500"
                     /db_xref="UniProtKB/Swiss-Prot:Q08313"
                     /translation="MESRPYSWVALDPDCDHPLDDKEKDKEKHERKCHCDVCCNGNGF
                     FGNDNAFIDQDLAQANLNKQVSDETIIIRDSCDINVTSTDVQAVTSVVTALNAAVVTA
                     TLTSIADGVIAELVAQDLLQLTANKQVNRQKLLIECSRGVNVTTVDADIATLISTATN
                     TLVAILVITLVL*"
                     /label="cotX CDS"
     gene            complement(1174875..1175393)
                     /gene="cotX"
                     /locus_tag="BSU_11760"
                     /old_locus_tag="BSU11760"
                     /label="cotX gene"
     downshifts      complement(1174899)
                     /Source="Nicolas_upshifts"
                     /id="D641"
                     /incds=0
                     /nref=76
                     /ntot=102
                     /MaxReadThrough="1.79219"
                     /MaxDrop="8.69761"
                     /score="18.5755652"
                     /energy="-10.4"
                     /TU="U952"
                     /idTUdmin="U952"
                     /TUdmin="-29"
                     /isTUend="FALSE"
                     /label="downshifts"
     downshifts      1174904
                     /Source="Nicolas_upshifts"
                     /id="D642"
                     /incds=0
                     /nref=1
                     /ntot=8
                     /MaxReadThrough="1.2156"
                     /MaxDrop="3.69222"
                     /score="-9.76125107"
                     /energy="-10.4"
                     /TU="NA"
                     /idTUdmin="U948"
                     /TUdmin=66
                     /isTUend="FALSE"
                     /label="downshifts"
     S_feature       complement(1175394..1175491)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1251175_1251272_c"
                     /HighExp="S8, S7, S6, BT, B36, G/S, Pyr, S5, B60, SMMPr"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigK"
                     /TUshortPSig="0.748"
                     /TUlongSig="SigK"
                     /TUlongPSig="0.98"
                     /label="S421"
     CDS             complement(1175492..1175809)
                     /gene="cotW"
                     /locus_tag="BSU_11770"
                     /old_locus_tag="BSU11770"
                     /function="16.5: Explore"
                     /function="16.13: Shape"
                     /function="16.8: Protect"
                     /experiment="publication(s) with functional evidences,
                     PMID:8509331, 19304857, 21665972, 25872412"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 8509331, 19304857,
                     21665972, 25872412; Product type cp: cell process"
                     /codon_start=1
                     /transl_table=11
                     /product="spore coat protein (outemost layer)"
                     /protein_id="NP_389059.1"
                     /db_xref="EnsemblGenomes-Gn:BSU11770"
                     /db_xref="EnsemblGenomes-Tr:CAB13034"
                     /db_xref="GOA:Q08310"
                     /db_xref="SubtiList:BG10497"
                     /db_xref="UniProtKB/Swiss-Prot:Q08310"
                     /translation="MSDNDKFKEELAKLPEVDPMTKMLVQNIFSKHGVTKDKMKKVSD
                     EEKEMLLNLVKDLQAKSQALIENQKKKKEEAAAQEQKNTKPLSRREQLIEQIRQRRKN
                     DNN*"
                     /label="cotW CDS"
     gene            complement(1175492..1175809)
                     /gene="cotW"
                     /locus_tag="BSU_11770"
                     /old_locus_tag="BSU11770"
                     /label="cotW gene"
     CDS             complement(1175850..1176236)
                     /gene="cotV"
                     /locus_tag="BSU_11780"
                     /old_locus_tag="BSU11780"
                     /function="16.13: Shape"
                     /function="16.8: Protect"
                     /function="16.5: Explore"
                     /experiment="publication(s) with functional evidences,
                     PMID:7519271, 8509331"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 7519271, 8509331; Product
                     type cp: cell process"
                     /codon_start=1
                     /transl_table=11
                     /product="spore coat protein (insoluble fraction)"
                     /protein_id="NP_389060.1"
                     /db_xref="EnsemblGenomes-Gn:BSU11780"
                     /db_xref="EnsemblGenomes-Tr:CAB13035"
                     /db_xref="GOA:Q08309"
                     /db_xref="InterPro:IPR011428"
                     /db_xref="SubtiList:BG10496"
                     /db_xref="UniProtKB/Swiss-Prot:Q08309"
                     /translation="MSFEEKVESLHPAIFEQLSSEFEQQIEVIDCENITIDTSHITAA
                     LSIQAFVTTMIIVATQLVIADEDLADAVASEILILDSSQIKKRTIIKIINSRNIKITL
                     SADEIITFVQILLQVLNSILSELDVL*"
                     /label="cotV CDS"
     gene            complement(1175850..1176236)
                     /gene="cotV"
                     /locus_tag="BSU_11780"
                     /old_locus_tag="BSU11780"
                     /label="cotV gene"
     promotor_-35    1176232..1176236
                     /Source="Nicolas_upshift_promotors"
                     /id="U951"
                     /multdbtbs="-"
                     /comp="M15"
                     /sig="Sig-"
                     /pcomp="0.99100899100899"
                     /psig="0.005994005994006"
                     /xcortree=1245
                     /SigmaFactorBS="ttgctcaaatattgcagggtgcagggattcgactttttcttc
                     aaatGACATaaccttcACTCCTTTCTTATCCatactctatataatgcaaatggggtgc
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    1176244..1176258
                     /Source="Nicolas_upshift_promotors"
                     /id="U951"
                     /multdbtbs="-"
                     /comp="M15"
                     /sig="Sig-"
                     /pcomp="0.99100899100899"
                     /psig="0.005994005994006"
                     /xcortree=1245
                     /SigmaFactorBS="ttgctcaaatattgcagggtgcagggattcgactttttcttc
                     aaatGACATaaccttcACTCCTTTCTTATCCatactctatataatgcaaatggggtgc
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        1176246
                     /Source="Nicolas_upshifts"
                     /id="U951"
                     /multdbtbs="-"
                     /comp="M15"
                     /sig="Sig-"
                     /pcomp="0.99100899100899"
                     /psig="0.005994005994006"
                     /xcortree=1245
                     /SigmaFactorBS="ttgctcaaatattgcagggtgcagggattcgactttttcttc
                     aaatGACATaaccttcACTCCTTTCTTATCCatactctatataatgcaaatggggtgc
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-10    complement(1176256..1176275)
                     /Source="Nicolas_upshift_promotors"
                     /id="U952"
                     /multdbtbs="SigK"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp="0.748251748251748"
                     /psig="0.748251748251748"
                     /xcortree=1351
                     /SigmaFactorBS="catgaattgtatcttgtccggcagaaaattggttatttttat
                     taTtCcGctctgcaccccattTGCATTATATAGAGTATGGAtaagaaaggagtgaagg
                     t"
                     /listShort="cotV, cotW, S421, cotX"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(1176278)
                     /Source="Nicolas_upshifts"
                     /id="U952"
                     /multdbtbs="SigK"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp="0.748251748251748"
                     /psig="0.748251748251748"
                     /xcortree=1351
                     /SigmaFactorBS="catgaattgtatcttgtccggcagaaaattggttatttttat
                     taTtCcGctctgcaccccattTGCATTATATAGAGTATGGAtaagaaaggagtgaagg
                     t"
                     /listShort="cotV, cotW, S421, cotX"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     S_feature       complement(1176280..1176784)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1252061_1252565_c"
                     /HighExp="S8, S6, S7, BT, S5, B36, Pyr, C30, G/S, nit"
                     /AntisenseName="yjcA"
                     /AntisenseCor="0.69838474492609404"
                     /AntisenseRegPval="-39.9"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigK"
                     /TUshortPSig="0.98"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S422"
     promotor_-35    1176333..1176338
                     /Source="Nicolas_upshift_promotors"
                     /id="U953"
                     /multdbtbs="SigE"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp=1
                     /psig=1
                     /xcortree=1132
                     /SigmaFactorBS="aataaaaataaccaattttctgccggacaagatacaaTTCAT
                     GaagaatagggttttgGCATATATGTGAAGGGATCatgattggcaaaggagtgaacga
                     g"
                     /listShort="yjcA, S423"
                     /listLong="yjzK, yjcZ, S424, spoVIF, S425"
                     /label="promotor_-35"
     promotor_-10    1176354..1176372
                     /Source="Nicolas_upshift_promotors"
                     /id="U953"
                     /multdbtbs="SigE"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp=1
                     /psig=1
                     /xcortree=1132
                     /SigmaFactorBS="aataaaaataaccaattttctgccggacaagatacaaTTCAT
                     GaagaatagggttttgGCATATATGTGAAGGGATCatgattggcaaaggagtgaacga
                     g"
                     /listShort="yjcA, S423"
                     /listLong="yjzK, yjcZ, S424, spoVIF, S425"
                     /label="promotor_-10"
     upshifts        1176356
                     /Source="Nicolas_upshifts"
                     /id="U953"
                     /multdbtbs="SigE"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp=1
                     /psig=1
                     /xcortree=1132
                     /SigmaFactorBS="aataaaaataaccaattttctgccggacaagatacaaTTCAT
                     GaagaatagggttttgGCATATATGTGAAGGGATCatgattggcaaaggagtgaacga
                     g"
                     /listShort="yjcA, S423"
                     /listLong="yjzK, yjcZ, S424, spoVIF, S425"
                     /label="upshifts"
     CDS             1176396..1176752
                     /gene="yjcA"
                     /locus_tag="BSU_11790"
                     /old_locus_tag="BSU11790"
                     /function="16.8: Protect"
                     /function="16.13: Shape"
                     /function="16.5: Explore"
                     /experiment="publication(s) with functional evidences,
                     PMID:14523132, 15849754, 16850406"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 14523132, 15849754,
                     16850406; Product type cp: cell process"
                     /codon_start=1
                     /transl_table=11
                     /product="sporulation-specific protein"
                     /protein_id="NP_389061.1"
                     /db_xref="EnsemblGenomes-Gn:BSU11790"
                     /db_xref="EnsemblGenomes-Tr:CAB13036"
                     /db_xref="GOA:O31623"
                     /db_xref="InterPro:IPR010773"
                     /db_xref="SubtiList:BG13154"
                     /db_xref="UniProtKB/Swiss-Prot:O31623"
                     /translation="MVINGLTIVLLSLAVFRLARLLVFDTIMAPLRSLFHEEKEEKDA
                     DGNIETYIVIKGTGVRAFIGELLSCYWCTGVWCAGFLILCQAVIPQAAQWLILLLAIA
                     GLAGIIETLVSKWLQE*"
                     /label="yjcA CDS"
     gene            1176396..1176752
                     /gene="yjcA"
                     /locus_tag="BSU_11790"
                     /old_locus_tag="BSU11790"
                     /label="yjcA gene"
     promotor_-35    1176762..1176771
                     /Source="Nicolas_upshift_promotors"
                     /id="U955"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp="0.999000999001"
                     /psig="0.999000999001"
                     /xcortree=1353
                     /SigmaFactorBS="gctcgtatcaaaatggctgcaagaataaggcgttaccACCAG
                     CAACTttctgtcagaataCGCATAAAGTAGCATATAtgacataaggaaaggaagggga
                     c"
                     /listShort="S423, yjzK"
                     /listLong="yjcZ, S424, spoVIF, S425"
                     /label="promotor_-35"
     promotor_-10    complement(1176769..1176788)
                     /Source="Nicolas_upshift_promotors"
                     /id="U954"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp="0.98001998001998"
                     /psig="0.98001998001998"
                     /xcortree=1256
                     /SigmaFactorBS="atgatgctgattcatttttgtccccttcctttcCTTATGTCA
                     TatatgctactttaTGCGTATTCTGACAGAAAGTtgctggtggtaacgccttattctt
                     g"
                     /listShort="S422"
                     /listLong="cotV, cotW, S421, cotX"
                     /label="promotor_-10"
     CDS             complement(1176777..1177010)
                     /locus_tag="BSU_11798"
                     /old_locus_tag="BSU11798"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 5: Unknown function"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="protein remnant"
                     /db_xref="PSEUDO:SOX90549.1"
                     /translation="MLSETASLKKQKTGVLRFLCQAIEAFSFYFRTRSLSFLSFLIDT
                     MNLYMEIFGKVYDADSFLSPSFPYVIYATLCVF*"
                     /label="protein remnant CDS"
     gene            complement(1176777..1177010)
                     /locus_tag="BSU_11798"
                     /old_locus_tag="BSU11798"
                     /pseudo
                     /label="gene"
     upshifts        complement(1176784)
                     /Source="Nicolas_upshifts"
                     /id="U954"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp="0.98001998001998"
                     /psig="0.98001998001998"
                     /xcortree=1256
                     /SigmaFactorBS="atgatgctgattcatttttgtccccttcctttcCTTATGTCA
                     TatatgctactttaTGCGTATTCTGACAGAAAGTtgctggtggtaacgccttattctt
                     g"
                     /listShort="S422"
                     /listLong="cotV, cotW, S421, cotX"
                     /label="upshifts"
     S_feature       1176785..1176971
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1252566_1252752"
                     /HighExp="S8, S6, S7, BT, S5, B36, S4, S3, G/S, Pyr"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="0.26970100000000002"
                     /TUshortSig="SigK, SigEF"
                     /TUshortPSig="0.999, 1"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S423"
     promotor_-10    1176785..1176802
                     /Source="Nicolas_upshift_promotors"
                     /id="U955"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp="0.999000999001"
                     /psig="0.999000999001"
                     /xcortree=1353
                     /SigmaFactorBS="gctcgtatcaaaatggctgcaagaataaggcgttaccACCAG
                     CAACTttctgtcagaataCGCATAAAGTAGCATATAtgacataaggaaaggaagggga
                     c"
                     /listShort="S423, yjzK"
                     /listLong="yjcZ, S424, spoVIF, S425"
                     /label="promotor_-10"
     upshifts        1176785
                     /Source="Nicolas_upshifts"
                     /id="U955"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp="0.999000999001"
                     /psig="0.999000999001"
                     /xcortree=1353
                     /SigmaFactorBS="gctcgtatcaaaatggctgcaagaataaggcgttaccACCAG
                     CAACTttctgtcagaataCGCATAAAGTAGCATATAtgacataaggaaaggaagggga
                     c"
                     /listShort="S423, yjzK"
                     /listLong="yjcZ, S424, spoVIF, S425"
                     /label="upshifts"
     promotor_-35    complement(1176802..1176811)
                     /Source="Nicolas_upshift_promotors"
                     /id="U954"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp="0.98001998001998"
                     /psig="0.98001998001998"
                     /xcortree=1256
                     /SigmaFactorBS="atgatgctgattcatttttgtccccttcctttcCTTATGTCA
                     TatatgctactttaTGCGTATTCTGACAGAAAGTtgctggtggtaacgccttattctt
                     g"
                     /listShort="S422"
                     /listLong="cotV, cotW, S421, cotX"
                     /label="promotor_-35"
     downshifts      complement(1176828)
                     /Source="Nicolas_upshifts"
                     /id="D643"
                     /incds=0
                     /nref=2
                     /ntot=13
                     /MaxReadThrough="3.12564"
                     /MaxDrop="4.58782"
                     /score="-6.14331629"
                     /energy="-6.8"
                     /TU="NA"
                     /idTUdmin="U954"
                     /TUdmin="-528"
                     /isTUend="FALSE"
                     /label="downshifts"
     downshifts      1176928
                     /Source="Nicolas_upshifts"
                     /id="D644"
                     /incds=0
                     /nref=3
                     /ntot=32
                     /MaxReadThrough="5.73879"
                     /MaxDrop="3.6919"
                     /score="33.8150878"
                     /energy="-6.8"
                     /TU="U953,U955"
                     /idTUdmin="U953"
                     /TUdmin="-66"
                     /isTUend="FALSE"
                     /label="downshifts"
     upshifts        complement(1176982)
                     /Source="Nicolas_upshifts"
                     /id="U956"
                     /multdbtbs="-"
                     /comp="M15"
                     /sig="Sig-"
                     /pcomp="0.284715284715285"
                     /psig="0.032967032967033"
                     /xcortree=768
                     /SigmaFactorBS="ctcattcacttttatccccccgcttatgatatatgctgagcg
                     agaCCGCCTCGttaaaaaaacaaaaaaccggagttctccggtttctttgccaggctat
                     t"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    1176983..1176992
                     /Source="Nicolas_upshift_promotors"
                     /id="U957"
                     /multdbtbs="SigK"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp="0.971028971028971"
                     /psig="0.971028971028971"
                     /xcortree=1288
                     /SigmaFactorBS="gaaaccggagaactccggttttttgttTTTTTAACGAggcgg
                     tctcgctcAGCATATATCATAAGCGGGGggataaaagtgaatgagtttgaaaaatgga
                     t"
                     /listShort="yjzK, yjcZ, S424, spoVIF, S425"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     misc_feature    complement(1176990..1176997)
                     /Source="Nicolas_upshift_promotors"
                     /id="U956"
                     /multdbtbs="-"
                     /comp="M15"
                     /sig="Sig-"
                     /pcomp="0.284715284715285"
                     /psig="0.032967032967033"
                     /xcortree=768
                     /SigmaFactorBS="ctcattcacttttatccccccgcttatgatatatgctgagcg
                     agaCCGCCTCGttaaaaaaacaaaaaaccggagttctccggtttctttgccaggctat
                     t"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_single_box"
                     /note="Geneious type: promotor_single_box"
     promotor_-10    1177006..1177025
                     /Source="Nicolas_upshift_promotors"
                     /id="U957"
                     /multdbtbs="SigK"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp="0.971028971028971"
                     /psig="0.971028971028971"
                     /xcortree=1288
                     /SigmaFactorBS="gaaaccggagaactccggttttttgttTTTTTAACGAggcgg
                     tctcgctcAGCATATATCATAAGCGGGGggataaaagtgaatgagtttgaaaaatgga
                     t"
                     /listShort="yjzK, yjcZ, S424, spoVIF, S425"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        1177016
                     /Source="Nicolas_upshifts"
                     /id="U957"
                     /multdbtbs="SigK"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp="0.971028971028971"
                     /psig="0.971028971028971"
                     /xcortree=1288
                     /SigmaFactorBS="gaaaccggagaactccggttttttgttTTTTTAACGAggcgg
                     tctcgctcAGCATATATCATAAGCGGGGggataaaagtgaatgagtttgaaaaatgga
                     t"
                     /listShort="yjzK, yjcZ, S424, spoVIF, S425"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             1177034..1177240
                     /gene="yjzK"
                     /locus_tag="BSU_11799"
                     /old_locus_tag="BSU11799"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved hypothetical protein"
                     /protein_id="YP_003097704.1"
                     /db_xref="EnsemblGenomes-Gn:BSU11799"
                     /db_xref="EnsemblGenomes-Tr:CAX52594"
                     /db_xref="UniProtKB/Swiss-Prot:C0H3Y7"
                     /translation="MNEFEKWIEGRYEPHEQKQKEHEDTMGSIRKDLDAFDKAGLEFE
                     DEIEELAEKTEALLKKHQAQYDQS*"
                     /label="yjzK CDS"
     gene            1177034..1177240
                     /gene="yjzK"
                     /locus_tag="BSU_11799"
                     /old_locus_tag="BSU11799"
                     /label="yjzK gene"
     CDS             1177077..1177292
                     /gene="yjcB"
                     /locus_tag="BSU_11800"
                     /old_locus_tag="BSU11800"
                     /function="16.5: Explore"
                     /experiment="publication(s) with functional evidences,
                     PMID:14523132"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 14523132; Product type
                     cp: cell process"
                     /codon_start=1
                     /transl_table=11
                     /product="sporulation-specific protein"
                     /protein_id="YP_009513951.1"
                     /translation="MNKSKKSMKTRWAVSEKTWMHLIKPVWNLKMRLKSWLKKRRPYL
                     KNIKLNMINRKSANALCEYPSRSQQLT*"
                     /label="yjcB CDS"
     gene            1177077..1177292
                     /gene="yjcB"
                     /locus_tag="BSU_11800"
                     /old_locus_tag="BSU11800"
                     /label="yjcB gene"
     promotor_-35    1177264..1177273
                     /Source="Nicolas_upshift_promotors"
                     /id="U958"
                     /multdbtbs="SigK"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp=1
                     /psig=1
                     /xcortree=1409
                     /SigmaFactorBS="tcaatcgtaaatccgcaaacgccctatgcgaatATCCAAGCC
                     GatcccagcagctCACATAGTGTATAGAGAGTAaaggaggtgcttatctatgggcttt
                     g"
                     /listShort="yjcZ, S424, spoVIF, S425"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    1177286..1177305
                     /Source="Nicolas_upshift_promotors"
                     /id="U958"
                     /multdbtbs="SigK"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp=1
                     /psig=1
                     /xcortree=1409
                     /SigmaFactorBS="tcaatcgtaaatccgcaaacgccctatgcgaatATCCAAGCC
                     GatcccagcagctCACATAGTGTATAGAGAGTAaaggaggtgcttatctatgggcttt
                     g"
                     /listShort="yjcZ, S424, spoVIF, S425"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        1177291
                     /Source="Nicolas_upshifts"
                     /id="U958"
                     /multdbtbs="SigK"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp=1
                     /psig=1
                     /xcortree=1409
                     /SigmaFactorBS="tcaatcgtaaatccgcaaacgccctatgcgaatATCCAAGCC
                     GatcccagcagctCACATAGTGTATAGAGAGTAaaggaggtgcttatctatgggcttt
                     g"
                     /listShort="yjcZ, S424, spoVIF, S425"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-10    complement(1177298..1177312)
                     /Source="Nicolas_upshift_promotors"
                     /id="U959"
                     /multdbtbs="-"
                     /comp="M15"
                     /sig="Sig-"
                     /pcomp="0.999000999001"
                     /psig=0
                     /xcortree=690
                     /SigmaFactorBS="gccataacagccgccgccgtagccgccgccgaatccgtatcc
                     aaagCCCATagataagcaCCTCCTTTACTCTCTatacactatgtgagctgctgggatc
                     g"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(1177312)
                     /Source="Nicolas_upshifts"
                     /id="U959"
                     /multdbtbs="-"
                     /comp="M15"
                     /sig="Sig-"
                     /pcomp="0.999000999001"
                     /psig=0
                     /xcortree=690
                     /SigmaFactorBS="gccataacagccgccgccgtagccgccgccgaatccgtatcc
                     aaagCCCATagataagcaCCTCCTTTACTCTCTatacactatgtgagctgctgggatc
                     g"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(1177322..1177326)
                     /Source="Nicolas_upshift_promotors"
                     /id="U959"
                     /multdbtbs="-"
                     /comp="M15"
                     /sig="Sig-"
                     /pcomp="0.999000999001"
                     /psig=0
                     /xcortree=690
                     /SigmaFactorBS="gccataacagccgccgccgtagccgccgccgaatccgtatcc
                     aaagCCCATagataagcaCCTCCTTTACTCTCTatacactatgtgagctgctgggatc
                     g"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             1177322..1177471
                     /gene="yjcZ"
                     /locus_tag="BSU_11809"
                     /old_locus_tag="BSU11809"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 14523132, 20156992,
                     21670523; Product type h: extrachromosomal origin"
                     /codon_start=1
                     /transl_table=11
                     /product="putative type I toxin"
                     /protein_id="YP_003097705.1"
                     /db_xref="EnsemblGenomes-Gn:BSU11809"
                     /db_xref="EnsemblGenomes-Tr:CAX52595"
                     /db_xref="GOA:C0H3Y8"
                     /db_xref="InterPro:IPR010070"
                     /db_xref="UniProtKB/Swiss-Prot:C0H3Y8"
                     /translation="MGFGYGFGGGYGGGCYGGYAGGYGGGYGSTFVLLVVLFILLIIV
                     GASFF*"
                     /label="yjcZ CDS"
     gene            1177322..1177471
                     /gene="yjcZ"
                     /locus_tag="BSU_11809"
                     /old_locus_tag="BSU11809"
                     /label="yjcZ gene"
     downshifts      1177412
                     /Source="Nicolas_upshifts"
                     /id="D645"
                     /incds=0
                     /nref=4
                     /ntot=29
                     /MaxReadThrough="8.16203"
                     /MaxDrop="4.48861"
                     /score="1.53429015"
                     /energy="-22.4"
                     /TU="U957,U958"
                     /idTUdmin="U955"
                     /TUdmin=110
                     /isTUend="FALSE"
                     /label="downshifts"
     S_feature       1177472..1177603
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1253253_1253384"
                     /HighExp="S7, BT, S8, B36, S6, G/S, Pyr, B60, S5, LoTm"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigK, SigK"
                     /TUshortPSig="1, 0.971"
                     /TUlongSig="SigK, SigEF"
                     /TUlongPSig="0.999, 1"
                     /label="S424"
     CDS             1177604..1177858
                     /gene="spoVIF"
                     /locus_tag="BSU_11810"
                     /old_locus_tag="BSU11810"
                     /function="16.8: Protect"
                     /function="16.5: Explore"
                     /experiment="publication(s) with functional evidences,
                     PMID:14523132, 14702409, 20435725"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 14523132, 14702409,
                     20435725; Product type cp: cell process"
                     /codon_start=1
                     /transl_table=11
                     /product="sporulation-specific protein needed for heat
                     resistance"
                     /protein_id="NP_389063.2"
                     /db_xref="EnsemblGenomes-Gn:BSU11810"
                     /db_xref="EnsemblGenomes-Tr:CAB13038"
                     /db_xref="GOA:O31625"
                     /db_xref="InterPro:IPR025942"
                     /db_xref="SubtiList:BG13156"
                     /db_xref="UniProtKB/Swiss-Prot:O31625"
                     /translation="MDNQFFKNIEKKTGVKMQDVMNLAGSLQNANFKDENTVRSVINR
                     VAQMANRRVPKELEDKIVESITSGKEKLDFGTISKMMDNK*"
                     /label="spoVIF CDS"
     gene            1177604..1177858
                     /gene="spoVIF"
                     /locus_tag="BSU_11810"
                     /old_locus_tag="BSU11810"
                     /label="spoVIF gene"
     downshifts      1177843
                     /Source="Nicolas_upshifts"
                     /id="D646"
                     /incds=0
                     /nref=40
                     /ntot=79
                     /MaxReadThrough="5.66609"
                     /MaxDrop="5.8411"
                     /score="7.68851688"
                     /energy="-10.7"
                     /TU="U957,U958"
                     /idTUdmin="U955"
                     /TUdmin=541
                     /isTUend="FALSE"
                     /label="downshifts"
     downshifts      complement(1177862)
                     /Source="Nicolas_upshifts"
                     /id="D647"
                     /incds=0
                     /nref=3
                     /ntot=9
                     /MaxReadThrough="3.12148"
                     /MaxDrop="4.34051"
                     /score="24.4726468"
                     /energy="-14.3"
                     /TU="NA"
                     /idTUdmin="U961"
                     /TUdmin=88
                     /isTUend="FALSE"
                     /label="downshifts"
     S_feature       1177888..1178988
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1253669_1254769"
                     /HighExp="S8, S6, S7, B36, S5, C30, BT, dia15, Diami,
                     H2O2"
                     /AntisenseName="yjcD"
                     /AntisenseCor="-0.210610370451118"
                     /AntisenseRegPval="-3.3"
                     /CDS_PredictionProba="0.18426200000000001"
                     /TUshortSig="SigK, SigK"
                     /TUshortPSig="1, 0.971"
                     /TUlongSig="SigK, SigEF"
                     /TUlongPSig="0.999, 1"
                     /label="S425"
     CDS             complement(1177932..1180211)
                     /gene="yjcD"
                     /locus_tag="BSU_11820"
                     /old_locus_tag="BSU11820"
                     /function="16.6: Maintain"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 11544244, 16014871,
                     17114254, 22933559; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative ATP-dependent DNA helicase
                     (sporulationassociated)"
                     /protein_id="NP_389064.3"
                     /db_xref="EnsemblGenomes-Gn:BSU11820"
                     /db_xref="EnsemblGenomes-Tr:CAB13039"
                     /db_xref="GOA:O31626"
                     /db_xref="InterPro:IPR000212"
                     /db_xref="InterPro:IPR014016"
                     /db_xref="InterPro:IPR014017"
                     /db_xref="InterPro:IPR027417"
                     /db_xref="InterPro:IPR034739"
                     /db_xref="SubtiList:BG13157"
                     /db_xref="UniProtKB/Swiss-Prot:O31626"
                     /translation="MKCARLNDRIIHLHTYSREHYQFLFEEGIKGHLFCSHCGKPVLL
                     RLNIADPPEFIHRQPGDFPACEEACEPKPSKEGKKEDDQESGVIRLPKGKAIAADPSP
                     AVTEWHRPRSIKPGTPFVPKTIEPDTSLFPSVGLNTDQLKAVTETEGPLLVLAGAGSG
                     KTRVLTARAAHMIEHLGIPPENMLLVTFTTKAVAEMKERMANQYGLQPAKVRRIVTGT
                     FHSLFYKILYHSNSAKWNGEHLLKMEWQREQYIKKALYEEGIDEKESPVDQALQQIGF
                     WKNTYVPNERIPLKDEWEKQVYRLYEHYERQKKEHSQFDFDDMASACYELFIERPDLL
                     EQYQSRFTYILIDEFQDINPVQYKIMQMLASPEQNLCCVGDDDQSIYAFRGSNPSFIL
                     DFQKDYPGAKTIYLTANYRSTHPIVSSADIVVKKNKNRYAKTLEAARDDIQVPVLFYP
                     YDEEEEATMVVSDIKEKIQNGASPEDFAVLYRTNSGGRAIYERLHQSSIPYTADRGVQ
                     SFYSRRIVRQILAYLYASQNEDDTEAIKHLLPALFLKQSALNTLKALSITEDCTMIKA
                     LAKLPDLKPFQLDKIKKIVPFFASLRTMKPVEAITFAEGKMGFSEYLKKRGNEGNKLE
                     KGSDDLRDIKVVAKKFKTIPDFLAHVDHMRAAEKNRTDEHGVQLMTIHRSKGLEFKTV
                     YVLGTVDGSIPHDFSLETARKGDEAALEEERRLLYVAMTRAKQHLYLSCPANRRGKTA
                     NRSRFLYPLLQKARQPLHH*"
                     /label="yjcD CDS"
     gene            complement(1177932..1180211)
                     /gene="yjcD"
                     /locus_tag="BSU_11820"
                     /old_locus_tag="BSU11820"
                     /label="yjcD gene"
     downshifts      complement(1177950)
                     /Source="Nicolas_upshifts"
                     /id="D648"
                     /incds=0
                     /nref=61
                     /ntot=171
                     /MaxReadThrough="2.59869"
                     /MaxDrop="4.36061"
                     /score="24.4726468"
                     /energy="-14.3"
                     /TU="NA"
                     /idTUdmin="U961"
                     /TUdmin=0
                     /isTUend="TRUE"
                     /label="downshifts"
     S_feature       complement(1180086..1180260)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1255867_1256041_c"
                     /HighExp="G180, G135, G150, H2O2, Paraq, Oxctl, LBGexp,
                     dia15, dia0, MG 15"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig=1
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S426"
     promotor_-35    1180139..1180147
                     /Source="Nicolas_upshift_promotors"
                     /id="U960"
                     /multdbtbs="-"
                     /comp="M1"
                     /sig="SigH"
                     /pcomp="0.868131868131868"
                     /psig="0.868131868131868"
                     /xcortree=958
                     /SigmaFactorBS="tgagaacaaaataaatgtccttttattccctcttcaaAGAGG
                     AATTgataatgttcTCTCGAATATGTATGTAAAtgtatgattctatcattcagtcggg
                     c"
                     /listShort="S427, yjzE"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    1180158..1180176
                     /Source="Nicolas_upshift_promotors"
                     /id="U960"
                     /multdbtbs="-"
                     /comp="M1"
                     /sig="SigH"
                     /pcomp="0.868131868131868"
                     /psig="0.868131868131868"
                     /xcortree=958
                     /SigmaFactorBS="tgagaacaaaataaatgtccttttattccctcttcaaAGAGG
                     AATTgataatgttcTCTCGAATATGTATGTAAAtgtatgattctatcattcagtcggg
                     c"
                     /listShort="S427, yjzE"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     S_feature       1180162..1180297
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1255943_1256078"
                     /HighExp="S4, S5, S3, S6, S7, S8, M9-stat, T4.0H, T3.0H,
                     S2"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigH"
                     /TUshortPSig="0.868"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S427"
     upshifts        1180162
                     /Source="Nicolas_upshifts"
                     /id="U960"
                     /multdbtbs="-"
                     /comp="M1"
                     /sig="SigH"
                     /pcomp="0.868131868131868"
                     /psig="0.868131868131868"
                     /xcortree=958
                     /SigmaFactorBS="tgagaacaaaataaatgtccttttattccctcttcaaAGAGG
                     AATTgataatgttcTCTCGAATATGTATGTAAAtgtatgattctatcattcagtcggg
                     c"
                     /listShort="S427, yjzE"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-10    complement(1180248..1180267)
                     /Source="Nicolas_upshift_promotors"
                     /id="U961"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.987012987012987"
                     /psig=1
                     /xcortree=2545
                     /SigmaFactorBS="cacccctctgctgtctcttttcccttaaacttACTTTttgaa
                     acacatttctTTTGATATGATAGTCATTGTctgtaatgaacaccttttgattgggagg
                     a"
                     /listShort="S426, yjcD"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(1180259)
                     /Source="Nicolas_upshifts"
                     /id="U961"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.987012987012987"
                     /psig=1
                     /xcortree=2545
                     /SigmaFactorBS="cacccctctgctgtctcttttcccttaaacttACTTTttgaa
                     acacatttctTTTGATATGATAGTCATTGTctgtaatgaacaccttttgattgggagg
                     a"
                     /listShort="S426, yjcD"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    1180275..1180281
                     /Source="Nicolas_upshift_promotors"
                     /id="U962"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp=1
                     /psig=1
                     /xcortree=197
                     /SigmaFactorBS="tcattacagacaatgactatcatatcaaaagaaatgTGTTTC
                     AaaaagtaagtttaaGGGAAAAGAGACAGCAGAGgggtgggtattgtatgatatatgc
                     a"
                     /listShort="yjzE"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-35    complement(1180283..1180287)
                     /Source="Nicolas_upshift_promotors"
                     /id="U961"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.987012987012987"
                     /psig=1
                     /xcortree=2545
                     /SigmaFactorBS="cacccctctgctgtctcttttcccttaaacttACTTTttgaa
                     acacatttctTTTGATATGATAGTCATTGTctgtaatgaacaccttttgattgggagg
                     a"
                     /listShort="S426, yjcD"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    1180296..1180314
                     /Source="Nicolas_upshift_promotors"
                     /id="U962"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp=1
                     /psig=1
                     /xcortree=197
                     /SigmaFactorBS="tcattacagacaatgactatcatatcaaaagaaatgTGTTTC
                     AaaaagtaagtttaaGGGAAAAGAGACAGCAGAGgggtgggtattgtatgatatatgc
                     a"
                     /listShort="yjzE"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        1180299
                     /Source="Nicolas_upshifts"
                     /id="U962"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp=1
                     /psig=1
                     /xcortree=197
                     /SigmaFactorBS="tcattacagacaatgactatcatatcaaaagaaatgTGTTTC
                     AaaaagtaagtttaaGGGAAAAGAGACAGCAGAGgggtgggtattgtatgatatatgc
                     a"
                     /listShort="yjzE"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             1180328..1180582
                     /gene="yjzE"
                     /locus_tag="BSU_11839"
                     /old_locus_tag="BSU11839"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 5: Unknown function; PubMedId : 11976315,
                     23155385"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_003097706.1"
                     /db_xref="EnsemblGenomes-Gn:BSU11839"
                     /db_xref="EnsemblGenomes-Tr:CAX52596"
                     /db_xref="UniProtKB/Swiss-Prot:C0H3Y9"
                     /translation="MIYAGQIQNQQYAQYANRTIGHKQDYAGTEKISYVPFQRVYKEL
                     EKQQENQTAAERKVNEMKRKRSLYKRLREKGMGTYINRYV*"
                     /label="yjzE CDS"
     gene            1180328..1180582
                     /gene="yjzE"
                     /locus_tag="BSU_11839"
                     /old_locus_tag="BSU11839"
                     /label="yjzE gene"
     downshifts      1180558
                     /Source="Nicolas_upshifts"
                     /id="D649"
                     /incds=0
                     /nref=101
                     /ntot=248
                     /MaxReadThrough="3.69482"
                     /MaxDrop="7.80206"
                     /score="5.37568515"
                     /energy="-6.1"
                     /TU="U962"
                     /idTUdmin="U960"
                     /TUdmin=0
                     /isTUend="TRUE"
                     /label="downshifts"
     downshifts      complement(1180648)
                     /Source="Nicolas_upshifts"
                     /id="D650"
                     /incds=0
                     /nref=78
                     /ntot=283
                     /MaxReadThrough="3.21062"
                     /MaxDrop="7.8562"
                     /score="-4.05705392"
                     /energy="-6.1"
                     /TU="U963"
                     /idTUdmin="U963"
                     /TUdmin="-36"
                     /isTUend="FALSE"
                     /label="downshifts"
     CDS             complement(1180655..1181077)
                     /gene="yjcF"
                     /locus_tag="BSU_11840"
                     /old_locus_tag="BSU11840"
                     /EC_number="2.3.1.-"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative acetyltransferase"
                     /protein_id="NP_389066.1"
                     /db_xref="EnsemblGenomes-Gn:BSU11840"
                     /db_xref="EnsemblGenomes-Tr:CAB13041"
                     /db_xref="GOA:O31628"
                     /db_xref="InterPro:IPR000182"
                     /db_xref="InterPro:IPR016181"
                     /db_xref="PDB:1Q2Y"
                     /db_xref="SubtiList:BG13159"
                     /db_xref="UniProtKB/Swiss-Prot:O31628"
                     /translation="MKAVIAKNEEQLKDAFYVREEVFVKEQNVPAEEEIDELENESEH
                     IVVYDGEKPVGAGRWRMKDGYGKLERICVLKSHRSAGVGGIIMKALEKAAADGGASGF
                     ILNAQTQAVPFYKKHGYRVLSEKEFLDAGIPHLQMMKD*"
                     /label="yjcF CDS"
     gene            complement(1180655..1181077)
                     /gene="yjcF"
                     /locus_tag="BSU_11840"
                     /old_locus_tag="BSU11840"
                     /label="yjcF gene"
     CDS             complement(1181081..1181596)
                     /gene="yjcG"
                     /locus_tag="BSU_11850"
                     /old_locus_tag="BSU11850"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 12466548, 16511078,
                     17012785, 18473364, 25643072; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative RNA ligase or phosphoesterase"
                     /protein_id="NP_389067.1"
                     /db_xref="EnsemblGenomes-Gn:BSU11850"
                     /db_xref="EnsemblGenomes-Tr:CAB13042"
                     /db_xref="GOA:O31629"
                     /db_xref="InterPro:IPR009097"
                     /db_xref="InterPro:IPR022932"
                     /db_xref="PDB:2D4G"
                     /db_xref="SubtiList:BG13160"
                     /db_xref="UniProtKB/Swiss-Prot:O31629"
                     /translation="MKYGIVLFPSKKLQDLANSYRKRYDPSYSLIPPHLTLRASFECA
                     EEKADQLVSHLRNIAKESHPLVLKMTKYSSFAPVNNVIYIKAEPTEELKTLNEKLYTG
                     VLAGEQEYNFVPHVTVGQNLSDDEHSDVLGQLKMQEVSHEEIVDRFHLLYQLENGSWT
                     VYETFLLGRGE*"
                     /label="yjcG CDS"
     gene            complement(1181081..1181596)
                     /gene="yjcG"
                     /locus_tag="BSU_11850"
                     /old_locus_tag="BSU11850"
                     /label="yjcG gene"
     CDS             complement(1181633..1182355)
                     /gene="yjcH"
                     /locus_tag="BSU_11860"
                     /old_locus_tag="BSU11860"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 20941576; Product type
                     e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative stress-related hydrolase"
                     /protein_id="NP_389068.1"
                     /db_xref="EnsemblGenomes-Gn:BSU11860"
                     /db_xref="EnsemblGenomes-Tr:CAB13043"
                     /db_xref="InterPro:IPR000801"
                     /db_xref="InterPro:IPR029058"
                     /db_xref="SubtiList:BG13161"
                     /db_xref="UniProtKB/Swiss-Prot:O31630"
                     /translation="MAPKNGTVQEKKFFSKELNEEMTLLVYLPSNYSPLYKYHVIIAQ
                     DGHDYFRLGRIGRQVEELLSKREIDRSIIIGVPYKDVKERRNTYHPEGSKFSAYKRFI
                     AHELVPFADDEYPTYQIGYGRTLIGDSLGATVSLMTALDYPNMFGNIIMQSPYVDKHV
                     LEAVKQSDDIKHLSIYHQIGTKETDVHTTDGNILDFTEPNRELKQLLEKKLSDYDFEP
                     FDGDHKWTYWQPLITPALKKML*"
                     /label="yjcH CDS"
     gene            complement(1181633..1182355)
                     /gene="yjcH"
                     /locus_tag="BSU_11860"
                     /old_locus_tag="BSU11860"
                     /label="yjcH gene"
     misc_feature    complement(1182394..1182413)
                     /Source="Nicolas_upshift_promotors"
                     /id="U963"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.999000999001"
                     /psig=1
                     /xcortree=2938
                     /SigmaFactorBS="tttatttcaacacttttttcttcgtgtgccgaaccgtttaaa
                     gagagaaatttctaataattCATGGTACAATAATTGAAAAtgcaagaaagtatagtga
                     t"
                     /listShort="yjcH, yjcG, yjcF"
                     /GFF_Attribute="listLong"
                     /label="promotor_single_box"
                     /note="Geneious type: promotor_single_box"
     upshifts        complement(1182415)
                     /Source="Nicolas_upshifts"
                     /id="U963"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.999000999001"
                     /psig=1
                     /xcortree=2938
                     /SigmaFactorBS="tttatttcaacacttttttcttcgtgtgccgaaccgtttaaa
                     gagagaaatttctaataattCATGGTACAATAATTGAAAAtgcaagaaagtatagtga
                     t"
                     /listShort="yjcH, yjcG, yjcF"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    1182464..1182471
                     /Source="Nicolas_upshift_promotors"
                     /id="U964"
                     /multdbtbs="SigA"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.986013986013986"
                     /psig=1
                     /xcortree=2887
                     /SigmaFactorBS="tctctttaaacggttcggcacacgaagaaaaaagTGTTGAAA
                     taaactgtgaattgCGCTAATATAAAACAATCAGaaaattgaaatcgatatttcttat
                     c"
                     /listShort="NA, metI, metC, S428"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    1182486..1182505
                     /Source="Nicolas_upshift_promotors"
                     /id="U964"
                     /multdbtbs="SigA"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.986013986013986"
                     /psig=1
                     /xcortree=2887
                     /SigmaFactorBS="tctctttaaacggttcggcacacgaagaaaaaagTGTTGAAA
                     taaactgtgaattgCGCTAATATAAAACAATCAGaaaattgaaatcgatatttcttat
                     c"
                     /listShort="NA, metI, metC, S428"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        1182490
                     /Source="Nicolas_upshifts"
                     /id="U964"
                     /multdbtbs="SigA"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.986013986013986"
                     /psig=1
                     /xcortree=2887
                     /SigmaFactorBS="tctctttaaacggttcggcacacgaagaaaaaagTGTTGAAA
                     taaactgtgaattgCGCTAATATAAAACAATCAGaaaattgaaatcgatatttcttat
                     c"
                     /listShort="NA, metI, metC, S428"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     misc_RNA        1182523..1182643
                     /gene="mswA"
                     /locus_tag="BSU_misc_RNA_15"
                     /product="S-adenosylmethionine riboswitch"
                     /experiment="publication(s) with functional evidences,
                     PMID:10094622, 12626738, 12910260, 17381305, 18039762"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 10094622, 12626738,
                     12910260, 17381305, 18039762; Product type n: RNA"
                     /function="16.3: Control"
                     /label="mswA RNA"
     gene            1182523..1182643
                     /gene="mswA"
                     /locus_tag="BSU_misc_RNA_15"
                     /label="mswA gene"
     downshifts      1182648
                     /Source="Nicolas_upshifts"
                     /id="D651"
                     /incds=0
                     /nref=8
                     /ntot=59
                     /MaxReadThrough="7.71668"
                     /MaxDrop="5.0477"
                     /score="31.1477774"
                     /energy="-15.2"
                     /TU="U964"
                     /idTUdmin="U962"
                     /TUdmin=2024
                     /isTUend="FALSE"
                     /label="downshifts"
     CDS             1182711..1183832
                     /gene="metI"
                     /locus_tag="BSU_11870"
                     /old_locus_tag="BSU11870"
                     /EC_number="2.5.1.49"
                     /EC_number="2.5.1.48"
                     /function="16.2: Construct biomass (Anabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:10939241, 11832514, 22938038"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 10939241, 11832514,
                     22938038; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="cystathionine gamma-synthase and
                     O-acetylhomoserine thiolyase"
                     /protein_id="NP_389069.1"
                     /db_xref="EnsemblGenomes-Gn:BSU11870"
                     /db_xref="EnsemblGenomes-Tr:CAB13044"
                     /db_xref="GOA:O31631"
                     /db_xref="InterPro:IPR000277"
                     /db_xref="InterPro:IPR015421"
                     /db_xref="InterPro:IPR015422"
                     /db_xref="InterPro:IPR015424"
                     /db_xref="SubtiList:BG13162"
                     /db_xref="UniProtKB/Swiss-Prot:O31631"
                     /translation="MSQHVETKLAQIGNRSDEVTGTVSAPIYLSTAYRHRGIGESTGF
                     DYVRTKNPTRQLVEDAIANLENGARGLAFSSGMAAIQTIMALFKSGDELIVSSDLYGG
                     TYRLFENEWKKYGLTFHYDDFSDEDCLRSKITPNTKAVFVETPTNPLMQEADIEHIAR
                     ITKEHGLLLIVDNTFYTPVLQRPLELGADIVIHSATKYLGGHNDLLAGLVVVKDERLG
                     EEMFQHQNAIGAVLPPFDSWLLMRGMKTLSLRMRQHQANAQELAAFLEEQEEISDVLY
                     PGKGGMLSFRLQKEEWVNPFLKALKTICFAESLGGVESFITYPATQTHMDIPEEIRIA
                     NGVCNRLLRFSVGIEHAEDLKEDLKQALCQVKEGAVSFE*"
                     /label="metI CDS"
     gene            1182711..1183832
                     /gene="metI"
                     /locus_tag="BSU_11870"
                     /old_locus_tag="BSU11870"
                     /label="metI gene"
     CDS             1183825..1184997
                     /gene="metC"
                     /locus_tag="BSU_11880"
                     /old_locus_tag="BSU11880"
                     /EC_number="4.4.1.8"
                     /function="16.2: Construct biomass (Anabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:10939241, 11832514, 11948165, 15760717"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 10939241, 11832514,
                     11948165, 15760717; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="cystathionine beta-lyase"
                     /protein_id="NP_389070.1"
                     /db_xref="EnsemblGenomes-Gn:BSU11880"
                     /db_xref="EnsemblGenomes-Tr:CAB13045"
                     /db_xref="GOA:O31632"
                     /db_xref="InterPro:IPR000277"
                     /db_xref="InterPro:IPR015421"
                     /db_xref="InterPro:IPR015422"
                     /db_xref="InterPro:IPR015424"
                     /db_xref="SubtiList:BG13163"
                     /db_xref="UniProtKB/Swiss-Prot:O31632"
                     /translation="MSKHNWTLETQLVHNPFKTDGGTGAVSVPIQHASTFHQSSFEEF
                     GAYDYSRSGTPTRTALEETIAALEGGTRGFAFSSGMAAISTAFLLLSQGDHVLVTEDV
                     YGGTFRMVTEVLTRFGIEHTFVDMTDRNEVARSIKPNTKVIYMETPSNPTLGITDIKA
                     VVQLAKENGCLTFLDNTFMTPALQRPLDLGVDIVLHSATKFLSGHSDVLSGLAAVKDE
                     ELGKQLYKLQNAFGAVLGVQDCWLVLRGLKTLQVRLEKASQTAQRLAEFFQKHPAVKR
                     VYYPGLADHPGAETHKSQSTGAGAVLSFELESKEAVKKLVENVSLPVFAVSLGAVESI
                     LSYPATMSHAAMPKEEREKRGITDGLLRLSVGVEHADDLEHDFEQALKEIAPVSVR*"
                     /label="metC CDS"
     gene            1183825..1184997
                     /gene="metC"
                     /locus_tag="BSU_11880"
                     /old_locus_tag="BSU11880"
                     /label="metC gene"
     downshifts      1184980
                     /Source="Nicolas_upshifts"
                     /id="D652"
                     /incds=0
                     /nref=108
                     /ntot=205
                     /MaxReadThrough="4.73188"
                     /MaxDrop="5.54268"
                     /score="4.00424187"
                     /energy="-9.2"
                     /TU="U964"
                     /idTUdmin="U964"
                     /TUdmin="-1474"
                     /isTUend="FALSE"
                     /label="downshifts"
     misc_feature    1185014..1185032
                     /Source="Nicolas_upshift_promotors"
                     /id="U965"
                     /multdbtbs="-"
                     /comp="M18"
                     /sig="SigL"
                     /pcomp="0.671328671328671"
                     /psig="0.671328671328671"
                     /xcortree=2911
                     /SigmaFactorBS="gctgaaagaaattgctccagtttcggttcgttaaaaaagaag
                     ccggggatAGTCCGGCTTCTTTTATTAttgttcgtcatcaggattcagaatcgcgagg
                     a"
                     /listShort="S428"
                     /GFF_Attribute="listLong"
                     /label="promotor_single_box"
                     /note="Geneious type: promotor_single_box"
     upshifts        1185024
                     /Source="Nicolas_upshifts"
                     /id="U965"
                     /multdbtbs="-"
                     /comp="M18"
                     /sig="SigL"
                     /pcomp="0.671328671328671"
                     /psig="0.671328671328671"
                     /xcortree=2911
                     /SigmaFactorBS="gctgaaagaaattgctccagtttcggttcgttaaaaaagaag
                     ccggggatAGTCCGGCTTCTTTTATTAttgttcgtcatcaggattcagaatcgcgagg
                     a"
                     /listShort="S428"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     S_feature       1185025..1186554
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1260806_1262335"
                     /HighExp="MG 5, MG t5, MG 10, BMM, GM 25, MG 15, Glu, GM
                     15, GM 45, GM 10"
                     /AntisenseName="yjcK"
                     /AntisenseCor="0.123731990206979"
                     /AntisenseRegPval="-1.4"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigL, SigA"
                     /TUshortPSig="0.671, 1"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S428"
     CDS             complement(1185030..1185575)
                     /gene="yjcK"
                     /locus_tag="BSU_11890"
                     /old_locus_tag="BSU11890"
                     /EC_number="2.3.1.267"
                     /function="16.6: Maintain"
                     /function="16.2: Construct biomass (Anabolism)"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 2828880; Product type
                     e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative ribosomal-protein-alanine
                     N-acetyltransferase"
                     /protein_id="NP_389071.1"
                     /db_xref="EnsemblGenomes-Gn:BSU11890"
                     /db_xref="EnsemblGenomes-Tr:CAB13046"
                     /db_xref="GOA:O31633"
                     /db_xref="InterPro:IPR000182"
                     /db_xref="InterPro:IPR016181"
                     /db_xref="SubtiList:BG13164"
                     /db_xref="UniProtKB/Swiss-Prot:O31633"
                     /translation="MLKGKTIYVRPLEVTDAEENLGLQSENRDFFEQFSMIRADDYYT
                     VEGQRKRITEYQERLEKDEEYHFGIFTASDDRLIGTVSLFQIIRGALQTAFIGYFLDK
                     AHNGKGIMTEAVRLVVDYAFHELKLHRIEAGVMPRNLGSMRVLEKAGFHKEGIARKNV
                     KINGVWEDHQVLAILNPDDEQ*"
                     /label="yjcK CDS"
     gene            complement(1185030..1185575)
                     /gene="yjcK"
                     /locus_tag="BSU_11890"
                     /old_locus_tag="BSU11890"
                     /label="yjcK gene"
     downshifts      complement(1185051)
                     /Source="Nicolas_upshifts"
                     /id="D653"
                     /incds=0
                     /nref=14
                     /ntot=127
                     /MaxReadThrough="0.4032"
                     /MaxDrop="4.23858"
                     /score="-7.12102596"
                     /energy="-7.3"
                     /TU="NA"
                     /idTUdmin="U966"
                     /TUdmin="-17"
                     /isTUend="TRUE"
                     /label="downshifts"
     CDS             complement(1185645..1186835)
                     /gene="yjcL"
                     /locus_tag="BSU_11900"
                     /old_locus_tag="BSU11900"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 15849754, 16850406;
                     Product type m: membrane component"
                     /codon_start=1
                     /transl_table=11
                     /product="putative integral inner membrane protein;
                     possibly aquaporin-related"
                     /protein_id="NP_389072.1"
                     /db_xref="EnsemblGenomes-Gn:BSU11900"
                     /db_xref="EnsemblGenomes-Tr:CAB13047"
                     /db_xref="GOA:O31634"
                     /db_xref="InterPro:IPR008537"
                     /db_xref="SubtiList:BG13165"
                     /db_xref="UniProtKB/Swiss-Prot:O31634"
                     /translation="MHSLISSDDVWVLWGFIAVWAAVSIGLEQRFKWASAVSGAIIAL
                     AGAMVFTNVGVLPVESPVYDTVWSYVVPLAIPLLLFQINVRQIFKESRRLLFIFLISS
                     VGTVLGSILAFFLLKQHIPYLDKIGGMISASYIGGGVNFAAMAAKFETPGEYVSATVV
                     ADNFMMALLFFILISIPALKWFQRHYAMPFEEKVKADGNSGNSAESYWKRKDISLKDI
                     AFNAGAAFALVAVSMKVSGYFKSIFSHPLLTGTLGDQYLVLTSLTVLIIFLFPRFFER
                     LNGSQELGTFLIYLFFVVIGIPADLRLIVTNAPLILLFVFIIAISNLAVSLAAGKLFR
                     VRLEEILLAVNATVGGPTTAAAMAIAKGWRELVAPIMLVGTLGYLIGNYVGTFMGNWF
                     SSFL*"
                     /label="yjcL CDS"
     gene            complement(1185645..1186835)
                     /gene="yjcL"
                     /locus_tag="BSU_11900"
                     /old_locus_tag="BSU11900"
                     /label="yjcL gene"
     promotor_-10    complement(1186861..1186880)
                     /Source="Nicolas_upshift_promotors"
                     /id="U966"
                     /multdbtbs="-"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp="0.448551448551449"
                     /psig=1
                     /xcortree=2871
                     /SigmaFactorBS="ttttttagaaaaactttttttggACTTGCTGttccgttcccc
                     ggcTATTATAATATGTCTTAATTttctaacaatagaggtgatggggttttgcattctt
                     t"
                     /listShort="yjcL, yjcK"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(1186865)
                     /Source="Nicolas_upshifts"
                     /id="U966"
                     /multdbtbs="-"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp="0.448551448551449"
                     /psig=1
                     /xcortree=2871
                     /SigmaFactorBS="ttttttagaaaaactttttttggACTTGCTGttccgttcccc
                     ggcTATTATAATATGTCTTAATTttctaacaatagaggtgatggggttttgcattctt
                     t"
                     /listShort="yjcL, yjcK"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(1186895..1186902)
                     /Source="Nicolas_upshift_promotors"
                     /id="U966"
                     /multdbtbs="-"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp="0.448551448551449"
                     /psig=1
                     /xcortree=2871
                     /SigmaFactorBS="ttttttagaaaaactttttttggACTTGCTGttccgttcccc
                     ggcTATTATAATATGTCTTAATTttctaacaatagaggtgatggggttttgcattctt
                     t"
                     /listShort="yjcL, yjcK"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-35    1186929..1186936
                     /Source="Nicolas_upshift_promotors"
                     /id="U967"
                     /multdbtbs="-"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp="0.85914085914086"
                     /psig=1
                     /xcortree=2414
                     /SigmaFactorBS="agccggggaacggaacagcaagtccaaaaaaagtttttctaa
                     aaaagcaGTTGACGAatagaaggtaaggTTATATAATAGAACTTGTCAgaaagataac
                     a"
                     /listShort="trnSL-Val2, S430"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     upshifts        1186940
                     /Source="Nicolas_upshifts"
                     /id="U967"
                     /multdbtbs="-"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp="0.85914085914086"
                     /psig=1
                     /xcortree=2414
                     /SigmaFactorBS="agccggggaacggaacagcaagtccaaaaaaagtttttctaa
                     aaaagcaGTTGACGAatagaaggtaaggTTATATAATAGAACTTGTCAgaaagataac
                     a"
                     /listShort="trnSL-Val2, S430"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-10    1186950..1186969
                     /Source="Nicolas_upshift_promotors"
                     /id="U967"
                     /multdbtbs="-"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp="0.85914085914086"
                     /psig=1
                     /xcortree=2414
                     /SigmaFactorBS="agccggggaacggaacagcaagtccaaaaaaagtttttctaa
                     aaaagcaGTTGACGAatagaaggtaaggTTATATAATAGAACTTGTCAgaaagataac
                     a"
                     /listShort="trnSL-Val2, S430"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     tRNA            1187008..1187080
                     /gene="trnSL-Val2"
                     /locus_tag="BSU_tRNA_83"
                     /product="tRNA-Val"
                     /inference="profile:tRNAscan:1.23"
                     /note="valine tRNA (GAC); Evidence 2a: Function from
                     experimental evidences in other organisms; Product type n:
                     RNA"
                     /function="16.2: Construct biomass (Anabolism)"
                     /label="trnSL-Val2 tRNA"
     gene            1187008..1187080
                     /gene="trnSL-Val2"
                     /locus_tag="BSU_tRNA_83"
                     /label="trnSL-Val2 gene"
     promotor_-10    complement(1187022..1187039)
                     /Source="Nicolas_upshift_promotors"
                     /id="U968"
                     /multdbtbs="-"
                     /comp="M20"
                     /sig="Sig-"
                     /pcomp="0.926073926073926"
                     /psig="0.007992007992008"
                     /xcortree=394
                     /SigmaFactorBS="gcaagggtttaagctatgattccgactgggCTCGAACcagcg
                     acctctaccctgtcaAGGTAGCGCTCTCCCAGCtgagctacggaatcatgatatgtat
                     g"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(1187036)
                     /Source="Nicolas_upshifts"
                     /id="U968"
                     /multdbtbs="-"
                     /comp="M20"
                     /sig="Sig-"
                     /pcomp="0.926073926073926"
                     /psig="0.007992007992008"
                     /xcortree=394
                     /SigmaFactorBS="gcaagggtttaagctatgattccgactgggCTCGAACcagcg
                     acctctaccctgtcaAGGTAGCGCTCTCCCAGCtgagctacggaatcatgatatgtat
                     g"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(1187060..1187066)
                     /Source="Nicolas_upshift_promotors"
                     /id="U968"
                     /multdbtbs="-"
                     /comp="M20"
                     /sig="Sig-"
                     /pcomp="0.926073926073926"
                     /psig="0.007992007992008"
                     /xcortree=394
                     /SigmaFactorBS="gcaagggtttaagctatgattccgactgggCTCGAACcagcg
                     acctctaccctgtcaAGGTAGCGCTCTCCCAGCtgagctacggaatcatgatatgtat
                     g"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     downshifts      1187070
                     /Source="Nicolas_upshifts"
                     /id="D654"
                     /incds=0
                     /nref=17
                     /ntot=80
                     /MaxReadThrough="4.64061"
                     /MaxDrop="5.10012"
                     /score="20.8247903"
                     /energy="-9.1"
                     /TU="U967"
                     /idTUdmin="U965"
                     /TUdmin=550
                     /isTUend="FALSE"
                     /label="downshifts"
     S_feature       complement(1187095..1187830)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1262876_1263611_c"
                     /HighExp="M9-stat, Lbstat, M0t90, Pyr, T0.30H, M40t90,
                     C30, S1, LPhT, T1.30H"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.999"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S429"
     S_feature       1187115..1188763
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1262896_1264544"
                     /HighExp="Cold, C30, G135, G180, G150, Oxctl, Fru, HPh,
                     Glu, UNK1"
                     /AntisenseName="yjcM"
                     /AntisenseCor="0.46809452811910301"
                     /AntisenseRegPval="-15.3"
                     /CDS_PredictionProba="0.27514300000000003"
                     /TUshortSig="SigA"
                     /TUshortPSig=1
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S430"
     downshifts      complement(1187124)
                     /Source="Nicolas_upshifts"
                     /id="D655"
                     /incds=0
                     /nref=29
                     /ntot=192
                     /MaxReadThrough="1.23936"
                     /MaxDrop="3.57085"
                     /score="-4.98447688"
                     /energy="-7.9"
                     /TU="NA"
                     /idTUdmin="U970"
                     /TUdmin=0
                     /isTUend="TRUE"
                     /label="downshifts"
     S_feature       complement(1187832..1187920)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1263613_1263701_c"
                     /HighExp="aero, HPh, M0t45, SMM, dia0, GM 150, Mal, M/G,
                     Mt0, LPh"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.999"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S431"
     downshifts      complement(1187875)
                     /Source="Nicolas_upshifts"
                     /id="D656"
                     /incds=0
                     /nref=34
                     /ntot=148
                     /MaxReadThrough="4.13737"
                     /MaxDrop="4.5557"
                     /score="11.73443"
                     /energy="-14.2"
                     /TU="U970"
                     /idTUdmin="U970"
                     /TUdmin="-751"
                     /isTUend="FALSE"
                     /label="downshifts"
     CDS             complement(1187921..1189150)
                     /gene="yjcM"
                     /locus_tag="BSU_11910"
                     /old_locus_tag="BSU11910"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms; PubMedId: 20011599"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved hypothetical protein; phage island"
                     /protein_id="NP_389073.1"
                     /db_xref="EnsemblGenomes-Gn:BSU11910"
                     /db_xref="EnsemblGenomes-Tr:CAB13048"
                     /db_xref="InterPro:IPR024301"
                     /db_xref="SubtiList:BG13166"
                     /db_xref="UniProtKB/Swiss-Prot:O31635"
                     /translation="MKKELLASLVLCLSLSPLVSTNEVFAATTNKETKENVSITNEIG
                     YEKVKDMLEQQKYDFEHNTPLAHPKESKLTDSDEGVLLYSALSKVDKQKFHEFTYDID
                     DVKTSEKNNKLIVEAYITRNFVFGVEKVTTSLGDNIKLEIPKTTSNKQSSQSTNTSNL
                     SFSQVKNSSNQLNVIPLSNSSKQLNVTQLNNSSSTLQYENDEEYSSDVKLDEFLKKYK
                     QEVKNDDKEEVKSEDKPVSMNFNAANSNQLTVTATSVKGYSGYAAMKYAEKYALKPNK
                     NYKYYKDKDCTNFVSQALRAGRMPYFKEWKPYTDAWVNAGAFRSYILKAGGIKMKTVS
                     DTYSNVKLGDVYHYDYHNKIGLRYADGWMDHTAIVTSRANMKLYVSYHSTNRLNVPRE
                     YVTSKEGGKRYVSSIRN*"
                     /label="yjcM CDS"
     gene            complement(1187921..1189150)
                     /gene="yjcM"
                     /locus_tag="BSU_11910"
                     /old_locus_tag="BSU11910"
                     /label="yjcM gene"
     downshifts      complement(1188043)
                     /Source="Nicolas_upshifts"
                     /id="D657"
                     /incds=1
                     /nref=4
                     /ntot=143
                     /MaxReadThrough="5.58558"
                     /MaxDrop="3.45178"
                     /score="11.73443"
                     /energy="-14.2"
                     /TU="U970"
                     /idTUdmin="U970"
                     /TUdmin="-919"
                     /isTUend="FALSE"
                     /label="downshifts"
     downshifts      1188720
                     /Source="Nicolas_upshifts"
                     /id="D658"
                     /incds=1
                     /nref=1
                     /ntot=48
                     /MaxReadThrough="3.19343"
                     /MaxDrop="1.98614"
                     /score="26.2462772"
                     /energy="-24.7"
                     /TU="NA"
                     /idTUdmin="U967"
                     /TUdmin=0
                     /isTUend="TRUE"
                     /label="downshifts"
     S_feature       complement(1189151..1189236)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1264932_1265017_c"
                     /HighExp="aero, SMM, T-3.40H, MG 150, Lbexp, SMMPr, GM 90,
                     C90, nit, HPh"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.999"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S432"
     promotor_-35    1189191..1189198
                     /Source="Nicolas_upshift_promotors"
                     /id="U969"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.97902097902098"
                     /psig="0.998001998001998"
                     /xcortree=2298
                     /SigmaFactorBS="aaatctaaatataagtaatatttatCATTTACAccaattgaa
                     atatgGCATAAAATACATGTAATAAtataacataaaaataaatacataaaaaggtatc
                     g"
                     /listShort="yjcN, S433, yjzF, yjzG, yjcO, S434, yjcP,
                     yjcQ"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    1189213..1189232
                     /Source="Nicolas_upshift_promotors"
                     /id="U969"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.97902097902098"
                     /psig="0.998001998001998"
                     /xcortree=2298
                     /SigmaFactorBS="aaatctaaatataagtaatatttatCATTTACAccaattgaa
                     atatgGCATAAAATACATGTAATAAtataacataaaaataaatacataaaaaggtatc
                     g"
                     /listShort="yjcN, S433, yjzF, yjzG, yjcO, S434, yjcP,
                     yjcQ"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     promotor_-10    complement(1189222..1189241)
                     /Source="Nicolas_upshift_promotors"
                     /id="U970"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.320679320679321"
                     /psig="0.999000999001"
                     /xcortree=2299
                     /SigmaFactorBS="gtataattttagttttctttttcattttttcctccgatacCT
                     TTTTAtgtatttattttTATGTTATATTATTACATGTattttatgccatatttcaatt
                     g"
                     /listShort="S432, yjcM, S431, S429"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        1189226
                     /Source="Nicolas_upshifts"
                     /id="U969"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.97902097902098"
                     /psig="0.998001998001998"
                     /xcortree=2298
                     /SigmaFactorBS="aaatctaaatataagtaatatttatCATTTACAccaattgaa
                     atatgGCATAAAATACATGTAATAAtataacataaaaataaatacataaaaaggtatc
                     g"
                     /listShort="yjcN, S433, yjzF, yjzG, yjcO, S434, yjcP,
                     yjcQ"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     upshifts        complement(1189240)
                     /Source="Nicolas_upshifts"
                     /id="U970"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.320679320679321"
                     /psig="0.999000999001"
                     /xcortree=2299
                     /SigmaFactorBS="gtataattttagttttctttttcattttttcctccgatacCT
                     TTTTAtgtatttattttTATGTTATATTATTACATGTattttatgccatatttcaatt
                     g"
                     /listShort="S432, yjcM, S431, S429"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(1189254..1189260)
                     /Source="Nicolas_upshift_promotors"
                     /id="U970"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.320679320679321"
                     /psig="0.999000999001"
                     /xcortree=2299
                     /SigmaFactorBS="gtataattttagttttctttttcattttttcctccgatacCT
                     TTTTAtgtatttattttTATGTTATATTATTACATGTattttatgccatatttcaatt
                     g"
                     /listShort="S432, yjcM, S431, S429"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             1189276..1189596
                     /gene="yjcN"
                     /locus_tag="BSU_11920"
                     /old_locus_tag="BSU11920"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved hypothetical protein; phage island"
                     /protein_id="NP_389074.1"
                     /db_xref="EnsemblGenomes-Gn:BSU11920"
                     /db_xref="EnsemblGenomes-Tr:CAB13049"
                     /db_xref="SubtiList:BG13167"
                     /db_xref="UniProtKB/Swiss-Prot:O31636"
                     /translation="MKKKTKIILSLLAALIVILIVLPVLSPVVFTASSEKGAIRHEIY
                     KRGYPYQSYFAVLQKREGDNESGNLYYVNWLDWKDETGQTPHLCYSKKSSDGEYEVSC
                     GTGP*"
                     /label="yjcN CDS"
     gene            1189276..1189596
                     /gene="yjcN"
                     /locus_tag="BSU_11920"
                     /old_locus_tag="BSU11920"
                     /label="yjcN gene"
     downshifts      1189606
                     /Source="Nicolas_upshifts"
                     /id="D659"
                     /incds=0
                     /nref=57
                     /ntot=233
                     /MaxReadThrough="3.73892"
                     /MaxDrop="4.41989"
                     /score="26.2462772"
                     /energy="-24.7"
                     /TU="U969"
                     /idTUdmin="U967"
                     /TUdmin=886
                     /isTUend="FALSE"
                     /label="downshifts"
     S_feature       1189651..1189748
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1265432_1265529"
                     /HighExp="LoTm, B60, Cold, B36, T3.30H, T3.0H, T4.0H,
                     T2.0H, Sw, M9-stat"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.998"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S433"
     CDS             1189749..1189880
                     /gene="yjzF"
                     /locus_tag="BSU_11928"
                     /old_locus_tag="BSU11928"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved hypothetical protein"
                     /protein_id="YP_003097707.1"
                     /db_xref="EnsemblGenomes-Gn:BSU11928"
                     /db_xref="EnsemblGenomes-Tr:CAX52597"
                     /db_xref="UniProtKB/Swiss-Prot:C0H3Z0"
                     /translation="MKQSKKKPSQKQHERLDRFWQQMMNTNMQTLRRGKGGAYKRRK*
                     "
                     /label="yjzF CDS"
     gene            1189749..1189880
                     /gene="yjzF"
                     /locus_tag="BSU_11928"
                     /old_locus_tag="BSU11928"
                     /label="yjzF gene"
     CDS             1189896..1190069
                     /gene="yjzG"
                     /locus_tag="BSU_11929"
                     /old_locus_tag="BSU11929"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 5: Unknown function"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_003097708.1"
                     /db_xref="EnsemblGenomes-Gn:BSU11929"
                     /db_xref="EnsemblGenomes-Tr:CAX52598"
                     /db_xref="UniProtKB/Swiss-Prot:C0H3Z1"
                     /translation="MMKNGFAYKNGKLVNIFCGKEELYNELKAFLVKTFSINVKEVSR
                     PSIYRRTKSKQLE*"
                     /label="yjzG CDS"
     gene            1189896..1190069
                     /gene="yjzG"
                     /locus_tag="BSU_11929"
                     /old_locus_tag="BSU11929"
                     /label="yjzG gene"
     CDS             1190106..1190567
                     /gene="yjcO"
                     /locus_tag="BSU_11930"
                     /old_locus_tag="BSU11930"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; Product type r: regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="putative DNA binding protein; phage island"
                     /protein_id="NP_389075.1"
                     /db_xref="EnsemblGenomes-Gn:BSU11930"
                     /db_xref="EnsemblGenomes-Tr:CAB13050"
                     /db_xref="GOA:O31637"
                     /db_xref="InterPro:IPR013324"
                     /db_xref="SubtiList:BG13168"
                     /db_xref="UniProtKB/Swiss-Prot:O31637"
                     /translation="MTDQMIAWEIEEWIRDYKFMLREIKRLNRVLNKVDFISTKLTAT
                     YGEEAGMPRGSAGVSQAELRQMDRRERRLHKYESIVHYLDNAMEHIEEEKHRIVYDCM
                     MEGMSYTAIANHLDCSRDTIRKIKTAIIGNIVNKVKEANFLQYLNSFKSAV*"
                     /label="yjcO CDS"
     gene            1190106..1190567
                     /gene="yjcO"
                     /locus_tag="BSU_11930"
                     /old_locus_tag="BSU11930"
                     /label="yjcO gene"
     promotor_-35    1190538..1190545
                     /Source="Nicolas_upshift_promotors"
                     /id="U971"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.992007992007992"
                     /psig="0.997002997002997"
                     /xcortree=2045
                     /SigmaFactorBS="aataaagtcaaagaagccaactttctgcaaTATTTGAAttcg
                     tttaaatcggCGGTGTAAAATGGGGGGCAGgatcggcgcggcggattattcctgcgtc
                     a"
                     /listShort="S434"
                     /listLong="yjcP, yjcQ"
                     /label="promotor_-35"
     promotor_-10    1190560..1190579
                     /Source="Nicolas_upshift_promotors"
                     /id="U971"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.992007992007992"
                     /psig="0.997002997002997"
                     /xcortree=2045
                     /SigmaFactorBS="aataaagtcaaagaagccaactttctgcaaTATTTGAAttcg
                     tttaaatcggCGGTGTAAAATGGGGGGCAGgatcggcgcggcggattattcctgcgtc
                     a"
                     /listShort="S434"
                     /listLong="yjcP, yjcQ"
                     /label="promotor_-10"
     S_feature       1190568..1190808
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1266349_1266589"
                     /HighExp="LoTm, B60, Cold, B36, Diami, S8, dia15, C30,
                     dia5, LPhT"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="0.12525800000000001"
                     /TUshortSig="SigA, SigA"
                     /TUshortPSig="0.997, 0.998"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S434"
     upshifts        1190568
                     /Source="Nicolas_upshifts"
                     /id="U971"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.992007992007992"
                     /psig="0.997002997002997"
                     /xcortree=2045
                     /SigmaFactorBS="aataaagtcaaagaagccaactttctgcaaTATTTGAAttcg
                     tttaaatcggCGGTGTAAAATGGGGGGCAGgatcggcgcggcggattattcctgcgtc
                     a"
                     /listShort="S434"
                     /listLong="yjcP, yjcQ"
                     /label="upshifts"
     promotor_-35    1190781..1190788
                     /Source="Nicolas_upshift_promotors"
                     /id="U972"
                     /multdbtbs="SigD"
                     /comp="M10"
                     /sig="SigD"
                     /pcomp=1
                     /psig=1
                     /xcortree=2836
                     /SigmaFactorBS="caacagattcgttcgacaaattttgcaaattGTTAATCGata
                     acttttcattCCCGATATTAAAAATGGGAgtgaattgtaaaatgaaaaaacagaaaaa
                     t"
                     /listShort="yjcP, yjcQ"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    1190802..1190820
                     /Source="Nicolas_upshift_promotors"
                     /id="U972"
                     /multdbtbs="SigD"
                     /comp="M10"
                     /sig="SigD"
                     /pcomp=1
                     /psig=1
                     /xcortree=2836
                     /SigmaFactorBS="caacagattcgttcgacaaattttgcaaattGTTAATCGata
                     acttttcattCCCGATATTAAAAATGGGAgtgaattgtaaaatgaaaaaacagaaaaa
                     t"
                     /listShort="yjcP, yjcQ"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        1190810
                     /Source="Nicolas_upshifts"
                     /id="U972"
                     /multdbtbs="SigD"
                     /comp="M10"
                     /sig="SigD"
                     /pcomp=1
                     /psig=1
                     /xcortree=2836
                     /SigmaFactorBS="caacagattcgttcgacaaattttgcaaattGTTAATCGata
                     acttttcattCCCGATATTAAAAATGGGAgtgaattgtaaaatgaaaaaacagaaaaa
                     t"
                     /listShort="yjcP, yjcQ"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             1190833..1191336
                     /gene="yjcP"
                     /locus_tag="BSU_11940"
                     /old_locus_tag="BSU11940"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms; PubMedId: 15033535"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved hypothetical protein: phage island"
                     /protein_id="NP_389076.1"
                     /db_xref="EnsemblGenomes-Gn:BSU11940"
                     /db_xref="EnsemblGenomes-Tr:CAB13051"
                     /db_xref="GOA:O31638"
                     /db_xref="SubtiList:BG13169"
                     /db_xref="UniProtKB/Swiss-Prot:O31638"
                     /translation="MKKQKNNKKKNIEKRNIEKRNIEEKNNEDLEELENAIYTYHKKE
                     LLAFFLEKTRIGHDKEEYKRFQSLLYKLDIECLEFAISRFSHIDIIHDHSKYVPAFIP
                     LFAAYLTMFFNFYEKHWGALSFAAGTIAAIVWIIAVERKHRNQAISIMKIFEQVKERK
                     VKDRSKD*"
                     /label="yjcP CDS"
     gene            1190833..1191336
                     /gene="yjcP"
                     /locus_tag="BSU_11940"
                     /old_locus_tag="BSU11940"
                     /label="yjcP gene"
     CDS             1191348..1191632
                     /gene="yjcQ"
                     /locus_tag="BSU_11950"
                     /old_locus_tag="BSU11950"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms; PubMedId: 15033535"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved hypothetical protein; phage island"
                     /protein_id="NP_389077.1"
                     /db_xref="EnsemblGenomes-Gn:BSU11950"
                     /db_xref="EnsemblGenomes-Tr:CAB13052"
                     /db_xref="InterPro:IPR018597"
                     /db_xref="InterPro:IPR036388"
                     /db_xref="InterPro:IPR036390"
                     /db_xref="PDB:2HGC"
                     /db_xref="SubtiList:BG13170"
                     /db_xref="UniProtKB/Swiss-Prot:O31639"
                     /translation="MNKDKLRYAILKEIFEGNTPLSENDIGVTEDQFDDAVNFLKREG
                     YIIGVHYSDDRPHLYKLGPELTEKGENYLKENGTWSKAYKTIKEIKDWIK*"
                     /label="yjcQ CDS"
     gene            1191348..1191632
                     /gene="yjcQ"
                     /locus_tag="BSU_11950"
                     /old_locus_tag="BSU11950"
                     /label="yjcQ gene"
     downshifts      1191602
                     /Source="Nicolas_upshifts"
                     /id="D660"
                     /incds=0
                     /nref=215
                     /ntot=271
                     /MaxReadThrough="1.63272"
                     /MaxDrop="7.26386"
                     /score="22.0381158"
                     /energy="-7.2"
                     /TU="NA"
                     /idTUdmin="U969"
                     /TUdmin=0
                     /isTUend="TRUE"
                     /label="downshifts"
     upshifts        complement(1191634)
                     /Source="Nicolas_upshifts"
                     /id="U973"
                     /multdbtbs="-"
                     /comp="M13"
                     /sig="Sig-"
                     /pcomp="0.828171828171828"
                     /psig="0.107892107892108"
                     /xcortree=80
                     /SigmaFactorBS="tcctgagacttaccggaagcagtttacagggaacaaaaaaag
                     caccCCGCaggatgctcttattatttaatccaatctttaatctctttaatggtcttat
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     misc_feature    complement(1191645..1191648)
                     /Source="Nicolas_upshift_promotors"
                     /id="U973"
                     /multdbtbs="-"
                     /comp="M13"
                     /sig="Sig-"
                     /pcomp="0.828171828171828"
                     /psig="0.107892107892108"
                     /xcortree=80
                     /SigmaFactorBS="tcctgagacttaccggaagcagtttacagggaacaaaaaaag
                     caccCCGCaggatgctcttattatttaatccaatctttaatctctttaatggtcttat
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_single_box"
                     /note="Geneious type: promotor_single_box"
     CDS             1191793..1192320
                     /gene="yjcR"
                     /locus_tag="BSU_11960"
                     /old_locus_tag="BSU11960"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 7489895, 7704261;
                     Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative phage-related nucleic acid binding
                     terminase small subunit; phage island"
                     /protein_id="NP_389078.1"
                     /db_xref="EnsemblGenomes-Gn:BSU11960"
                     /db_xref="EnsemblGenomes-Tr:CAB13053"
                     /db_xref="GOA:O31640"
                     /db_xref="InterPro:IPR009057"
                     /db_xref="InterPro:IPR010332"
                     /db_xref="SubtiList:BG13171"
                     /db_xref="UniProtKB/Swiss-Prot:O31640"
                     /translation="MAEKHIQAYKDYVKGMKYKDLAEKYGVSVNTIKSWKQRHGWERK
                     KGAPIEKSVHTKKGGQPGNKNALGNNGGAPQKNQNAVTHGFFSKFLPEETLEIMEEIQ
                     ERSPADMIWDQIQIQYAAILRAQKIMFVSDKEEMIKELKKKRSLISEVSEIEDGLVIS
                     FSTWFRYRLYSETNT*"
                     /label="yjcR CDS"
     gene            1191793..1192320
                     /gene="yjcR"
                     /locus_tag="BSU_11960"
                     /old_locus_tag="BSU11960"
                     /label="yjcR gene"
     promotor_-35    1192467..1192472
                     /Source="Nicolas_upshift_promotors"
                     /id="U974"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.748251748251748"
                     /psig="0.992007992007992"
                     /xcortree=2218
                     /SigmaFactorBS="tacagcgattgattaactcgagcaatcaatgtcgcagttATA
                     TTTatttttcaagaaAATGTTATAATGAAAAGCCAtaaaatgatgggagggggaattt
                     c"
                     /listShort="yjcS, S435, yjdA, S436"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    1192485..1192504
                     /Source="Nicolas_upshift_promotors"
                     /id="U974"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.748251748251748"
                     /psig="0.992007992007992"
                     /xcortree=2218
                     /SigmaFactorBS="tacagcgattgattaactcgagcaatcaatgtcgcagttATA
                     TTTatttttcaagaaAATGTTATAATGAAAAGCCAtaaaatgatgggagggggaattt
                     c"
                     /listShort="yjcS, S435, yjdA, S436"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        1192488
                     /Source="Nicolas_upshifts"
                     /id="U974"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.748251748251748"
                     /psig="0.992007992007992"
                     /xcortree=2218
                     /SigmaFactorBS="tacagcgattgattaactcgagcaatcaatgtcgcagttATA
                     TTTatttttcaagaaAATGTTATAATGAAAAGCCAtaaaatgatgggagggggaattt
                     c"
                     /listShort="yjcS, S435, yjdA, S436"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             1192494..1192811
                     /gene="yjcS"
                     /locus_tag="BSU_11970"
                     /old_locus_tag="BSU11970"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved hypothetical protein; phage island"
                     /protein_id="NP_389079.1"
                     /db_xref="EnsemblGenomes-Gn:BSU11970"
                     /db_xref="EnsemblGenomes-Tr:CAB13054"
                     /db_xref="GOA:O31641"
                     /db_xref="InterPro:IPR007138"
                     /db_xref="InterPro:IPR011008"
                     /db_xref="PDB:1Q8B"
                     /db_xref="SubtiList:BG13172"
                     /db_xref="UniProtKB/Swiss-Prot:O31641"
                     /translation="MKSHKMMGGGISMHYITACLKIISDKDLNEIMKEFKKLEEETNK
                     EEGCITFHAYPLEPSERKIMLWEIWENEEAVKIHFTKKHTIDVQKQELTEVEWLMKSN
                     VND*"
                     /label="yjcS CDS"
     gene            1192494..1192811
                     /gene="yjcS"
                     /locus_tag="BSU_11970"
                     /old_locus_tag="BSU11970"
                     /label="yjcS gene"
     S_feature       1192812..1193047
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1268593_1268828"
                     /HighExp="dia5, H2O2, dia15, dia0, Lbexp, Lbtran, C90,
                     Oxctl, S1, aero"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.992"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S435"
     CDS             1193048..1193803
                     /gene="yjdA"
                     /locus_tag="BSU_11980"
                     /old_locus_tag="BSU11980"
                     /EC_number="1.1.1.-"
                     /function="16.2: Construct biomass (Anabolism)"
                     /function="16.11: Scavenge (Catabolism)"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 2243795; Product type
                     e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative acyl-carrier protein oxidoreductase;
                     phage island"
                     /protein_id="NP_389080.1"
                     /db_xref="EnsemblGenomes-Gn:BSU11980"
                     /db_xref="EnsemblGenomes-Tr:CAB13055"
                     /db_xref="GOA:O31642"
                     /db_xref="InterPro:IPR002347"
                     /db_xref="InterPro:IPR020904"
                     /db_xref="InterPro:IPR036291"
                     /db_xref="SubtiList:BG13173"
                     /db_xref="UniProtKB/Swiss-Prot:O31642"
                     /translation="MSHSQEKIALITGASSQGDIGTAICRKLASQGIHIFFTHWNSDT
                     AWIEEFQQEILRMGVRCEAMKIDLSDAHAAFTIHEKISDKLGYPSILINNAAHSASDN
                     YVSLDAKSLDEHYAVNMRSNFLLCVEFARRFKKSNLISGRIINMTSGQDLGPLPGELA
                     YAATKGAISAFTRSLSQELAPLGITVNAVNPGPTDSTWMTDEIRNFLSPKFPMGRIGT
                     PDDAARMIAFLASDEAEWITGQIIHSEGGFIRG*"
                     /label="yjdA CDS"
     gene            1193048..1193803
                     /gene="yjdA"
                     /locus_tag="BSU_11980"
                     /old_locus_tag="BSU11980"
                     /label="yjdA gene"
     S_feature       1193804..1193891
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1269585_1269672"
                     /HighExp="C90, S1, dia0, dia5, Mt0, Lbexp, Gly, H2O2,
                     Oxctl, Lbtran"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.992"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S436"
     downshifts      1193848
                     /Source="Nicolas_upshifts"
                     /id="D661"
                     /incds=0
                     /nref=89
                     /ntot=238
                     /MaxReadThrough="2.66489"
                     /MaxDrop="5.39812"
                     /score="-0.84766737"
                     /energy="-14.2"
                     /TU="NA"
                     /idTUdmin="U974"
                     /TUdmin="-20"
                     /isTUend="TRUE"
                     /label="downshifts"
     S_feature       complement(1193891..1193951)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1269672_1269732_c"
                     /HighExp="Lbstat, BI, BT, nit, S2, ferm, B60, B36, M0t90,
                     S3"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="NA"
                     /TUshortPSig="NA"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S437"
     downshifts      complement(1193922)
                     /Source="Nicolas_upshifts"
                     /id="D662"
                     /incds=0
                     /nref=80
                     /ntot=134
                     /MaxReadThrough="1.9707"
                     /MaxDrop="7.43843"
                     /score="-5.56180712"
                     /energy="-14.2"
                     /TU="NA"
                     /idTUdmin="U975"
                     /TUdmin=0
                     /isTUend="TRUE"
                     /label="downshifts"
     CDS             complement(1193952..1194299)
                     /gene="yjdB"
                     /locus_tag="BSU_11990"
                     /old_locus_tag="BSU11990"
                     /function="16.1: Circulate"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 16291680; Product type
                     h: extrachromosomal origin"
                     /codon_start=1
                     /transl_table=11
                     /product="putative exported protein; phage island"
                     /protein_id="NP_389081.1"
                     /db_xref="EnsemblGenomes-Gn:BSU11990"
                     /db_xref="EnsemblGenomes-Tr:CAB13056"
                     /db_xref="InterPro:IPR003343"
                     /db_xref="InterPro:IPR008964"
                     /db_xref="SubtiList:BG13174"
                     /db_xref="UniProtKB/Swiss-Prot:O31643"
                     /translation="MNFKKTVVSALSISALALSVSGVASAHEINSTPTEVKNISISPT
                     HVIKIQDYNLPLKVGETYSVKNNSATRYWTDNQKVAEVDQNGLVTAKSKGKATITLFK
                     GTAVFGKVYVTVY*"
                     /label="yjdB CDS"
     gene            complement(1193952..1194299)
                     /gene="yjdB"
                     /locus_tag="BSU_11990"
                     /old_locus_tag="BSU11990"
                     /label="yjdB gene"
     promotor_-10    complement(1194331..1194349)
                     /Source="Nicolas_upshift_promotors"
                     /id="U975"
                     /multdbtbs="-"
                     /comp="M1"
                     /sig="SigH"
                     /pcomp="0.997002997002997"
                     /psig="0.997002997002997"
                     /xcortree=507
                     /SigmaFactorBS="tcaattgatcgttcacatattattaacatttatttaCAAGGA
                     AAAtaattactttTATTGAATTGTTATAGTGCaagacaaaaaactttaaaggagtgtt
                     t"
                     /listShort="yjdB"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(1194344)
                     /Source="Nicolas_upshifts"
                     /id="U975"
                     /multdbtbs="-"
                     /comp="M1"
                     /sig="SigH"
                     /pcomp="0.997002997002997"
                     /psig="0.997002997002997"
                     /xcortree=507
                     /SigmaFactorBS="tcaattgatcgttcacatattattaacatttatttaCAAGGA
                     AAAtaattactttTATTGAATTGTTATAGTGCaagacaaaaaactttaaaggagtgtt
                     t"
                     /listShort="yjdB"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     S_feature       complement(1194346..1194802)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1270127_1270583_c"
                     /HighExp="T1.30H, T2.0H, T2.30H, T3.0H, M9-stat, T1.0H,
                     Lbstat, T3.30H, M0t90, Lbtran"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.983"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S438"
     promotor_-35    complement(1194360..1194368)
                     /Source="Nicolas_upshift_promotors"
                     /id="U975"
                     /multdbtbs="-"
                     /comp="M1"
                     /sig="SigH"
                     /pcomp="0.997002997002997"
                     /psig="0.997002997002997"
                     /xcortree=507
                     /SigmaFactorBS="tcaattgatcgttcacatattattaacatttatttaCAAGGA
                     AAAtaattactttTATTGAATTGTTATAGTGCaagacaaaaaactttaaaggagtgtt
                     t"
                     /listShort="yjdB"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     misc_feature    1194762..1194780
                     /Source="Nicolas_upshift_promotors"
                     /id="U976"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.33966033966034"
                     /psig="0.99100899100899"
                     /xcortree=1564
                     /SigmaFactorBS="tttttccggaagcttcggtaaaaaacgaaacttttgtctcta
                     tgatttTGTTTTATAATGTAAACGGtttcttatatagtatacttatactatcaatttg
                     c"
                     /listShort="manR"
                     /listLong="manP, manA, S439, S440, yjdF, yjdI"
                     /label="promotor_single_box"
                     /note="Geneious type: promotor_single_box"
     upshifts        1194774
                     /Source="Nicolas_upshifts"
                     /id="U976"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.33966033966034"
                     /psig="0.99100899100899"
                     /xcortree=1564
                     /SigmaFactorBS="tttttccggaagcttcggtaaaaaacgaaacttttgtctcta
                     tgatttTGTTTTATAATGTAAACGGtttcttatatagtatacttatactatcaatttg
                     c"
                     /listShort="manR"
                     /listLong="manP, manA, S439, S440, yjdF, yjdI"
                     /label="upshifts"
     promotor_-10    complement(1194780..1194799)
                     /Source="Nicolas_upshift_promotors"
                     /id="U977"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.572427572427572"
                     /psig="0.983016983016983"
                     /xcortree=327
                     /SigmaFactorBS="ttatgtattccatctgtttttctatccttcctgtcagtatct
                     ACTTGAGCaaattgatagtatAAGTATACTATATAAGAAACcgtttacattataaaac
                     a"
                     /listShort="S438, yjdB"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(1194802)
                     /Source="Nicolas_upshifts"
                     /id="U977"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.572427572427572"
                     /psig="0.983016983016983"
                     /xcortree=327
                     /SigmaFactorBS="ttatgtattccatctgtttttctatccttcctgtcagtatct
                     ACTTGAGCaaattgatagtatAAGTATACTATATAAGAAACcgtttacattataaaac
                     a"
                     /listShort="S438, yjdB"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(1194813..1194820)
                     /Source="Nicolas_upshift_promotors"
                     /id="U977"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.572427572427572"
                     /psig="0.983016983016983"
                     /xcortree=327
                     /SigmaFactorBS="ttatgtattccatctgtttttctatccttcctgtcagtatct
                     ACTTGAGCaaattgatagtatAAGTATACTATATAAGAAACcgtttacattataaaac
                     a"
                     /listShort="S438, yjdB"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             1194850..1196796
                     /gene="manR"
                     /locus_tag="BSU_12000"
                     /old_locus_tag="BSU12000"
                     /function="16.1: Circulate"
                     /function="16.3: Control"
                     /experiment="publication(s) with functional evidences,
                     PMID:10438772, 10960106, 23551403"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 10438772, 10960106,
                     23551403; Product type r: regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional DNA-binding activator"
                     /protein_id="NP_389082.2"
                     /db_xref="EnsemblGenomes-Gn:BSU12000"
                     /db_xref="EnsemblGenomes-Tr:CAB13057"
                     /db_xref="GOA:O31644"
                     /db_xref="InterPro:IPR002178"
                     /db_xref="InterPro:IPR007737"
                     /db_xref="InterPro:IPR011608"
                     /db_xref="InterPro:IPR013011"
                     /db_xref="InterPro:IPR013196"
                     /db_xref="InterPro:IPR016152"
                     /db_xref="InterPro:IPR036095"
                     /db_xref="InterPro:IPR036388"
                     /db_xref="InterPro:IPR036634"
                     /db_xref="SubtiList:BG13175"
                     /db_xref="UniProtKB/Swiss-Prot:O31644"
                     /translation="MEYINTRQKEILYLLLSEPDDYLVVQDFADRVQCSEKTIRNDLK
                     VIEDYLNEHSHAQLIRKPGLGVYLHIEEQERTWLSQQLHTEHFSSRQRSDKERMLHIA
                     YDLLMNPKPVSAKDIAARHFVNRSSIKKDLYAVEEWLKRFDLTLVSRQRLGLKVEGNE
                     RNKRKALARISDLIHNTAFTSQFIKSKFLHYEVDFVTKEIKSLQKKHSLYFTDETFES
                     LLLHTLLMVRRIKMKQPISLSPKEMAAVKKKKEYQWTFACLQRLEPVFAIRFPEEEAV
                     YLTLHILGGKVRYPLQTEENLENAVLPKVVGHLINRVSELKMMDFHKDQDLINGLNIH
                     LNTVLQRLSYDLSVANPMLNDIKKMYPYLFHLIIDVLEDINQTFDLHIPEEEAAYLTL
                     HFQAAIERMQGSSETHKKAVIVCHMGIGMSQLLRTKIERKYHQIAVMACIAKADLKDY
                     IKKHEDIDLVISTIALENITVPHIVVSPLLEPGEEKKLSAFIRQLGESHRQKQKTFQM
                     LNNTTPFLVFLQQEAEHRYKLIEQLATALFEKGYVDKDYAVHAVMREKMSATNIGSGI
                     AIPHANAKFIKQSAIAIATLKEPLEWGNEKVSLVFMLAVKHEDQTMTKQLFSELSYLS
                     EQPAFVQKLTKETNVMTFLSHLDY*"
                     /label="manR CDS"
     gene            1194850..1196796
                     /gene="manR"
                     /locus_tag="BSU_12000"
                     /old_locus_tag="BSU12000"
                     /label="manR gene"
     downshifts      1196772
                     /Source="Nicolas_upshifts"
                     /id="D663"
                     /incds=0
                     /nref=3
                     /ntot=35
                     /MaxReadThrough="4.64475"
                     /MaxDrop="3.79938"
                     /score="28.4199725"
                     /energy="-9.1"
                     /TU="U976"
                     /idTUdmin="U976"
                     /TUdmin="-110"
                     /isTUend="FALSE"
                     /label="downshifts"
     SCAR            1196826..1196827
                     /note="deletion occured in betwen marked nucleotides"
                     /created_by="User"
                     /label="IIG_Bs02"
     S_feature       <1196827..1196925
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1275640_1275738"
                     /HighExp="Oxctl, Lbexp, Paraq, T0.30H, dia0, Diami, H2O2,
                     dia5, Fru, G150"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="0.15168699999999999"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.936"
                     /TUlongSig="SigA"
                     /TUlongPSig="0.991"
                     /label="S439"
     promotor_-35    1196900..1196906
                     /Source="Nicolas_upshift_promotors"
                     /id="U980"
                     /multdbtbs="-"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp="0.463536463536464"
                     /psig="0.995004995004995"
                     /xcortree=2151
                     /SigmaFactorBS="ctattctccagcaatgatctaaataaaataagaGTTTAATag
                     ttggagaagaaaTGTTACACTCTTTTCTGTATatggtaaagaatgaaaaaacacgatt
                     c"
                     /listShort="S440, yjdF"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    1196921..1196940
                     /Source="Nicolas_upshift_promotors"
                     /id="U980"
                     /multdbtbs="-"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp="0.463536463536464"
                     /psig="0.995004995004995"
                     /xcortree=2151
                     /SigmaFactorBS="ctattctccagcaatgatctaaataaaataagaGTTTAATag
                     ttggagaagaaaTGTTACACTCTTTTCTGTATatggtaaagaatgaaaaaacacgatt
                     c"
                     /listShort="S440, yjdF"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     S_feature       1196927..1196995
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1275740_1275808"
                     /HighExp="Oxctl, Lbexp, Paraq, T0.30H, dia0, Diami, dia5,
                     Fru, H2O2, G150"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA, SigA"
                     /TUshortPSig="0.995, 0.936"
                     /TUlongSig="SigA"
                     /TUlongPSig="0.991"
                     /label="S440"
     upshifts        1196927
                     /Source="Nicolas_upshifts"
                     /id="U980"
                     /multdbtbs="-"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp="0.463536463536464"
                     /psig="0.995004995004995"
                     /xcortree=2151
                     /SigmaFactorBS="ctattctccagcaatgatctaaataaaataagaGTTTAATag
                     ttggagaagaaaTGTTACACTCTTTTCTGTATatggtaaagaatgaaaaaacacgatt
                     c"
                     /listShort="S440, yjdF"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             1196996..1197478
                     /gene="yjdF"
                     /locus_tag="BSU_12030"
                     /old_locus_tag="BSU12030"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms; PubMedId: 20139185"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved hypothetical protein"
                     /protein_id="NP_389085.1"
                     /db_xref="EnsemblGenomes-Gn:BSU12030"
                     /db_xref="EnsemblGenomes-Tr:CAB13060"
                     /db_xref="InterPro:IPR016787"
                     /db_xref="SubtiList:BG13178"
                     /db_xref="UniProtKB/Swiss-Prot:O31647"
                     /translation="MSVTFPSSGCPSFFNIFYEEGIVMKLTIYYDGQFWVGVVEVVDN
                     GKLRAFRHLFGKEPRDSEVLEFVHNQLLNMMAQAEQEGVRLQGRRQKKINPKRLQRQV
                     SKELKNAGVTSKAQEAIKLELEARKQKKKQIMKEQREHVKEQRYMLKKQKAKKKHRGK
                     *"
                     /label="yjdF CDS"
     gene            1196996..1197478
                     /gene="yjdF"
                     /locus_tag="BSU_12030"
                     /old_locus_tag="BSU12030"
                     /label="yjdF gene"
     downshifts      1197458
                     /Source="Nicolas_upshifts"
                     /id="D664"
                     /incds=0
                     /nref=220
                     /ntot=267
                     /MaxReadThrough="5.32805"
                     /MaxDrop="7.35641"
                     /score="7.68574519"
                     /energy="-10.2"
                     /TU="U978"
                     /idTUdmin="U980"
                     /TUdmin=1
                     /isTUend="TRUE"
                     /label="downshifts"
     CDS             complement(1197524..1198030)
                     /gene="yjdG"
                     /locus_tag="BSU_12040"
                     /old_locus_tag="BSU12040"
                     /EC_number="2.3.1.-"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative acetyltransferase"
                     /protein_id="NP_389086.1"
                     /db_xref="EnsemblGenomes-Gn:BSU12040"
                     /db_xref="EnsemblGenomes-Tr:CAB13061"
                     /db_xref="GOA:O31648"
                     /db_xref="InterPro:IPR000182"
                     /db_xref="InterPro:IPR016181"
                     /db_xref="SubtiList:BG13179"
                     /db_xref="UniProtKB/Swiss-Prot:O31648"
                     /translation="MVLLETNRLRLQTIDIPLLDAASKQDHQAIKELGYETNGEWPNS
                     DFFEAIPYFREILVKNNGTKGFDSWIIVKKDNYEIVGGTGFLGDPDENGMIEIGFATN
                     KSHRRKGYCVEAAQKLINWALSRETVSRITARCEHDNLGSQKTLEKLGFILNHKSAEY
                     KHWIYVTK*"
                     /label="yjdG CDS"
     gene            complement(1197524..1198030)
                     /gene="yjdG"
                     /locus_tag="BSU_12040"
                     /old_locus_tag="BSU12040"
                     /label="yjdG gene"
     downshifts      complement(1197548)
                     /Source="Nicolas_upshifts"
                     /id="D665"
                     /incds=0
                     /nref=13
                     /ntot=154
                     /MaxReadThrough="2.51872"
                     /MaxDrop="4.09551"
                     /score="15.8830125"
                     /energy="-9.9"
                     /TU="NA"
                     /idTUdmin="U984"
                     /TUdmin=7
                     /isTUend="TRUE"
                     /label="downshifts"
     misc_feature    complement(1198055..1198074)
                     /Source="Nicolas_upshift_promotors"
                     /id="U981"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.654345654345654"
                     /psig="0.775224775224775"
                     /xcortree=679
                     /SigmaFactorBS="aattttttcatctttctctactgccaaggtaccagagaaaat
                     tgttaTATGTTATCATTATTCCCAGtaaaaagaaaagaggattaaatatatggttctc
                     c"
                     /listShort="yjdG"
                     /GFF_Attribute="listLong"
                     /label="promotor_single_box"
                     /note="Geneious type: promotor_single_box"
     upshifts        complement(1198061)
                     /Source="Nicolas_upshifts"
                     /id="U981"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.654345654345654"
                     /psig="0.775224775224775"
                     /xcortree=679
                     /SigmaFactorBS="aattttttcatctttctctactgccaaggtaccagagaaaat
                     tgttaTATGTTATCATTATTCCCAGtaaaaagaaaagaggattaaatatatggttctc
                     c"
                     /listShort="yjdG"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     S_feature       complement(1198063..1198248)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1276876_1277061_c"
                     /HighExp="S5, S4, S7, S6, S8, B36, LoTm, S3, B60, T1.0H"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="0.289238"
                     /TUshortSig="SigEF, SigWXY"
                     /TUshortPSig="0.999, 1"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S441"
     CDS             complement(1198249..1198644)
                     /gene="yjdH"
                     /locus_tag="BSU_12050"
                     /old_locus_tag="BSU12050"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 12562816; Product type
                     cp: cell process"
                     /codon_start=1
                     /transl_table=11
                     /product="putative spore coat protein"
                     /protein_id="NP_389087.2"
                     /db_xref="EnsemblGenomes-Gn:BSU12050"
                     /db_xref="EnsemblGenomes-Tr:CAB13062"
                     /db_xref="SubtiList:BG13180"
                     /db_xref="UniProtKB/Swiss-Prot:O31649"
                     /translation="MYHYFYGPALIPYFSHTHNPQRSPDFSERQRRREITLTVDGFVP
                     PSSTEDLGDGFYSYAWTNQQVINPGEYLVCHLEGRDINVINGGFTPRDTAPLYAVASF
                     PRRRNQWVIIIHNPVQTQRAISLYLIAKR*"
                     /label="yjdH CDS"
     gene            complement(1198249..1198644)
                     /gene="yjdH"
                     /locus_tag="BSU_12050"
                     /old_locus_tag="BSU12050"
                     /label="yjdH gene"
     promotor_-10    complement(1198667..1198685)
                     /Source="Nicolas_upshift_promotors"
                     /id="U982"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.999000999001"
                     /psig="0.999000999001"
                     /xcortree=1101
                     /SigmaFactorBS="ctatagcccattattagtctacatggaacaaaacaGGAATGa
                     acaaataactcccACATACAATTTGTATGAATggaaaataaaggagtggttgctttgt
                     a"
                     /listShort="yjdH, S441, yjdG"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(1198680)
                     /Source="Nicolas_upshifts"
                     /id="U982"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.999000999001"
                     /psig="0.999000999001"
                     /xcortree=1101
                     /SigmaFactorBS="ctatagcccattattagtctacatggaacaaaacaGGAATGa
                     acaaataactcccACATACAATTTGTATGAATggaaaataaaggagtggttgctttgt
                     a"
                     /listShort="yjdH, S441, yjdG"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     S_feature       complement(1198682..1199382)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1277495_1278195_c"
                     /HighExp="T0.30H, T1.0H, T-0.40H, T1.30H, T0.0H, S0,
                     T2.0H, Salt, T2.30H, T-1.10H"
                     /AntisenseName="yjdI"
                     /AntisenseCor="-0.383915151906285"
                     /AntisenseRegPval="-10.1"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigWXY"
                     /TUshortPSig=1
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S442"
     promotor_-35    complement(1198700..1198705)
                     /Source="Nicolas_upshift_promotors"
                     /id="U982"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.999000999001"
                     /psig="0.999000999001"
                     /xcortree=1101
                     /SigmaFactorBS="ctatagcccattattagtctacatggaacaaaacaGGAATGa
                     acaaataactcccACATACAATTTGTATGAATggaaaataaaggagtggttgctttgt
                     a"
                     /listShort="yjdH, S441, yjdG"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-35    1198788..1198795
                     /Source="Nicolas_upshift_promotors"
                     /id="U983"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.983016983016983"
                     /psig=1
                     /xcortree=2214
                     /SigmaFactorBS="tgtccttccgttgattcaatgctagtaaCCTTGAAAatgcag
                     gttaggaTGATAGAATTTACATATTACtgcaagaagttagacatacatcattttgata
                     g"
                     /listShort="yjdI"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    1198809..1198828
                     /Source="Nicolas_upshift_promotors"
                     /id="U983"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.983016983016983"
                     /psig=1
                     /xcortree=2214
                     /SigmaFactorBS="tgtccttccgttgattcaatgctagtaaCCTTGAAAatgcag
                     gttaggaTGATAGAATTTACATATTACtgcaagaagttagacatacatcattttgata
                     g"
                     /listShort="yjdI"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        1198820
                     /Source="Nicolas_upshifts"
                     /id="U983"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.983016983016983"
                     /psig=1
                     /xcortree=2214
                     /SigmaFactorBS="tgtccttccgttgattcaatgctagtaaCCTTGAAAatgcag
                     gttaggaTGATAGAATTTACATATTACtgcaagaagttagacatacatcattttgata
                     g"
                     /listShort="yjdI"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             1198873..1199352
                     /gene="trnE"
                     /locus_tag="BSU_12060"
                     /old_locus_tag="BSU12060"
                     /function="16.6: Maintain"
                     /function="16.8: Protect"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 2a: Function from experimental evidences
                     in other organisms; PubMedId: 22128149; Product type e :
                     enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="cys-tRNApro deacetylase; tRNA editing"
                     /protein_id="NP_389088.1"
                     /db_xref="EnsemblGenomes-Gn:BSU12060"
                     /db_xref="EnsemblGenomes-Tr:CAB13063"
                     /db_xref="GOA:O31650"
                     /db_xref="InterPro:IPR004369"
                     /db_xref="InterPro:IPR007214"
                     /db_xref="InterPro:IPR036754"
                     /db_xref="SubtiList:BG13181"
                     /db_xref="UniProtKB/Swiss-Prot:O31650"
                     /translation="MAKKMAKTNAVRLIEQQNISYEVLGYKTDGQPVDGISVAEKIGY
                     SLKYVYKTLVAAAGTNHYYVFVVPVAEELDVKKAAKVTGEKKIEMIAMKELLAVTGYL
                     RGGCSPIGMKKLFPTYIDASAETLDFIIVSAGKIGMQLKLAPQDLARSCDAAFAEIV*
                     "
                     /label="trnE CDS"
     gene            1198873..1199352
                     /gene="trnE"
                     /locus_tag="BSU_12060"
                     /old_locus_tag="BSU12060"
                     /label="trnE gene"
     downshifts      1199351
                     /Source="Nicolas_upshifts"
                     /id="D666"
                     /incds=0
                     /nref=4
                     /ntot=100
                     /MaxReadThrough="2.68858"
                     /MaxDrop="3.19616"
                     /score="-5.52314972"
                     /energy="-12.5"
                     /TU="NA"
                     /idTUdmin="U978"
                     /TUdmin=0
                     /isTUend="TRUE"
                     /label="downshifts"
     CDS             complement(1199392..1199586)
                     /gene="yjzH"
                     /locus_tag="BSU_12069"
                     /old_locus_tag="BSU12069"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved hypothetical protein"
                     /protein_id="YP_003097709.1"
                     /db_xref="EnsemblGenomes-Gn:BSU12069"
                     /db_xref="EnsemblGenomes-Tr:CAX52599"
                     /db_xref="InterPro:IPR025234"
                     /db_xref="UniProtKB/Swiss-Prot:C0H3Z2"
                     /translation="MKEYEFVRVELSTMRRRPKEDYQQIIHDYAKRGWRFVQIFAPSI
                     DGYGAAAYFEIIFERDAEKA*"
                     /label="yjzH CDS"
     gene            complement(1199392..1199586)
                     /gene="yjzH"
                     /locus_tag="BSU_12069"
                     /old_locus_tag="BSU12069"
                     /label="yjzH gene"
     downshifts      complement(1199427)
                     /Source="Nicolas_upshifts"
                     /id="D667"
                     /incds=0
                     /nref=6
                     /ntot=144
                     /MaxReadThrough="7.83072"
                     /MaxDrop="2.95935"
                     /score="-6.07514027"
                     /energy="-7"
                     /TU="U984"
                     /idTUdmin="U987"
                     /TUdmin=220
                     /isTUend="FALSE"
                     /label="downshifts"
     promotor_-10    complement(1199600..1199615)
                     /Source="Nicolas_upshift_promotors"
                     /id="U984"
                     /multdbtbs="-"
                     /comp="M9"
                     /sig="SigWXY"
                     /pcomp=1
                     /psig=1
                     /xcortree=1698
                     /SigmaFactorBS="tagtgagtgaaatatactttccgaccttaacctaggttttCG
                     GAACTTCTcgctccattttACGTATACCTTAATAGgagggatcaaacgatgaaagaat
                     a"
                     /listShort="yjzH, S442, yjdH, S441, yjdG"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(1199616)
                     /Source="Nicolas_upshifts"
                     /id="U984"
                     /multdbtbs="-"
                     /comp="M9"
                     /sig="SigWXY"
                     /pcomp=1
                     /psig=1
                     /xcortree=1698
                     /SigmaFactorBS="tagtgagtgaaatatactttccgaccttaacctaggttttCG
                     GAACTTCTcgctccattttACGTATACCTTAATAGgagggatcaaacgatgaaagaat
                     a"
                     /listShort="yjzH, S442, yjdH, S441, yjdG"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(1199627..1199636)
                     /Source="Nicolas_upshift_promotors"
                     /id="U984"
                     /multdbtbs="-"
                     /comp="M9"
                     /sig="SigWXY"
                     /pcomp=1
                     /psig=1
                     /xcortree=1698
                     /SigmaFactorBS="tagtgagtgaaatatactttccgaccttaacctaggttttCG
                     GAACTTCTcgctccattttACGTATACCTTAATAGgagggatcaaacgatgaaagaat
                     a"
                     /listShort="yjzH, S442, yjdH, S441, yjdG"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             complement(1199752..1200081)
                     /gene="yjdJ"
                     /locus_tag="BSU_12070"
                     /old_locus_tag="BSU12070"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved hypothetical protein"
                     /protein_id="NP_389089.1"
                     /db_xref="EnsemblGenomes-Gn:BSU12070"
                     /db_xref="EnsemblGenomes-Tr:CAB13064"
                     /db_xref="GOA:O31651"
                     /db_xref="InterPro:IPR016508"
                     /db_xref="InterPro:IPR025440"
                     /db_xref="SubtiList:BG13182"
                     /db_xref="UniProtKB/Swiss-Prot:O31651"
                     /translation="MKGIFLVVQLGFSIMVFLFLAAVNWYQGSELVSDRFDWNYTAKL
                     SKLLNGIDAVSSPKQISQLDFFIYSAKHYPVMSALMIISFLYVLAALFLLIYSVKCNK
                     QEIHLDC*"
                     /label="yjdJ CDS"
     gene            complement(1199752..1200081)
                     /gene="yjdJ"
                     /locus_tag="BSU_12070"
                     /old_locus_tag="BSU12070"
                     /label="yjdJ gene"
     promotor_-10    complement(1200118..1200137)
                     /Source="Nicolas_upshift_promotors"
                     /id="U985"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.428571428571429"
                     /psig="0.994005994005994"
                     /xcortree=3103
                     /SigmaFactorBS="aaatagacttgcgtttgagttgtatggaagtgaaATTGCAag
                     aataacccatacGGTGGTAATATATTGTTTGAttttcccatattcatagatttggagg
                     t"
                     /listShort="yjdJ"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(1200131)
                     /Source="Nicolas_upshifts"
                     /id="U985"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.428571428571429"
                     /psig="0.994005994005994"
                     /xcortree=3103
                     /SigmaFactorBS="aaatagacttgcgtttgagttgtatggaagtgaaATTGCAag
                     aataacccatacGGTGGTAATATATTGTTTGAttttcccatattcatagatttggagg
                     t"
                     /listShort="yjdJ"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     S_feature       complement(1200133..1200700)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1278946_1279513_c"
                     /HighExp="S8, S6, nit, S7, ferm, S2, S5, M9-tran, M/G, GM
                     150"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA, SigK"
                     /TUshortPSig="0.987, 1"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S443"
     promotor_-35    complement(1200152..1200157)
                     /Source="Nicolas_upshift_promotors"
                     /id="U985"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.428571428571429"
                     /psig="0.994005994005994"
                     /xcortree=3103
                     /SigmaFactorBS="aaatagacttgcgtttgagttgtatggaagtgaaATTGCAag
                     aataacccatacGGTGGTAATATATTGTTTGAttttcccatattcatagatttggagg
                     t"
                     /listShort="yjdJ"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-35    1200185..1200189
                     /Source="Nicolas_upshift_promotors"
                     /id="U986"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.913086913086913"
                     /psig="0.996003996003996"
                     /xcortree=2745
                     /SigmaFactorBS="tcttgcaatttcacttccatacaactcaaacgcaagTCTATt
                     tttttgtttgttttTGGCTTATAATACCTGATGAtggaaaaagagtgcgggtttatag
                     a"
                     /listShort="S444"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    1200205..1200224
                     /Source="Nicolas_upshift_promotors"
                     /id="U986"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.913086913086913"
                     /psig="0.996003996003996"
                     /xcortree=2745
                     /SigmaFactorBS="tcttgcaatttcacttccatacaactcaaacgcaagTCTATt
                     tttttgtttgttttTGGCTTATAATACCTGATGAtggaaaaagagtgcgggtttatag
                     a"
                     /listShort="S444"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     S_feature       1200209..1200710
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1279022_1279523"
                     /HighExp="LBGstat, C30, HPh, Oxctl, dia15, Paraq, T0.30H,
                     C90, LBGtran, LPh"
                     /AntisenseName="ctaO"
                     /AntisenseCor="-0.43946575370083102"
                     /AntisenseRegPval="-13.4"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.996"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S444"
     upshifts        1200209
                     /Source="Nicolas_upshifts"
                     /id="U986"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.913086913086913"
                     /psig="0.996003996003996"
                     /xcortree=2745
                     /SigmaFactorBS="tcttgcaatttcacttccatacaactcaaacgcaagTCTATt
                     tttttgtttgttttTGGCTTATAATACCTGATGAtggaaaaagagtgcgggtttatag
                     a"
                     /listShort="S444"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             complement(1200701..1201690)
                     /gene="ctaO"
                     /locus_tag="BSU_12080"
                     /old_locus_tag="BSU12080"
                     /EC_number="2.5.1.-"
                     /function="16.10: Respire"
                     /function="16.2: Construct biomass (Anabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:10675592, 15491161, 15849754, 16850406"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 10675592, 15491161,
                     15849754, 16850406; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="minor protoheme IX farnesyltransferase 1 (heme
                     Osynthase)"
                     /protein_id="NP_389090.2"
                     /db_xref="EnsemblGenomes-Gn:BSU12080"
                     /db_xref="EnsemblGenomes-Tr:CAB13065"
                     /db_xref="GOA:O31652"
                     /db_xref="InterPro:IPR000537"
                     /db_xref="InterPro:IPR006369"
                     /db_xref="InterPro:IPR030470"
                     /db_xref="SubtiList:BG13183"
                     /db_xref="UniProtKB/Swiss-Prot:O31652"
                     /translation="MQFWGRRLFLENTRDSAAISETKYIKASNRVTIYDFIKLAKPGI
                     IISNSIAAFGGFWIAFASAEKTLTGLAFLMTMVTAMLGTAFVMASGTVYNNYFDRHMD
                     AKMARTRSRASVTGKMPPAMILTYGSVLGIAGLAMLYSLNPLTAFLGLAAFIFYAIIY
                     TVWVKRTSVWSTFVGSFPGAAPPLMGYCAVTGDFSMTAVLLYTIMFLWQPPHFWAIGI
                     RRKEEYRAAGVPLLPVVKGNHVTKIKMMQYIAVLVPVTLLFPFSLGTGHISPFYFLAA
                     LVLGGIWIKKSIKGFKTDDDVKWAKDMFVYSLIYFCLLFFIMMIDSFMMFLIR*"
                     /label="ctaO CDS"
     gene            complement(1200701..1201690)
                     /gene="ctaO"
                     /locus_tag="BSU_12080"
                     /old_locus_tag="BSU12080"
                     /label="ctaO gene"
     promotor_-10    complement(1201691..1201710)
                     /Source="Nicolas_upshift_promotors"
                     /id="U987"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.36963036963037"
                     /psig="0.987012987012987"
                     /xcortree=2978
                     /SigmaFactorBS="aatatcatgacaaatatgggaaataATTGTGattctgtcccc
                     ctCTTGTTACGATAACAAAAGCatgcagttttgggggaggcgtctatttttggagaat
                     a"
                     /listShort="ctaO, S443, yjdJ"
                     /listLong="yjzH"
                     /label="promotor_-10"
     upshifts        complement(1201694)
                     /Source="Nicolas_upshifts"
                     /id="U987"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.36963036963037"
                     /psig="0.987012987012987"
                     /xcortree=2978
                     /SigmaFactorBS="aatatcatgacaaatatgggaaataATTGTGattctgtcccc
                     ctCTTGTTACGATAACAAAAGCatgcagttttgggggaggcgtctatttttggagaat
                     a"
                     /listShort="ctaO, S443, yjdJ"
                     /listLong="yjzH"
                     /label="upshifts"
     promotor_-35    complement(1201724..1201729)
                     /Source="Nicolas_upshift_promotors"
                     /id="U987"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.36963036963037"
                     /psig="0.987012987012987"
                     /xcortree=2978
                     /SigmaFactorBS="aatatcatgacaaatatgggaaataATTGTGattctgtcccc
                     ctCTTGTTACGATAACAAAAGCatgcagttttgggggaggcgtctatttttggagaat
                     a"
                     /listShort="ctaO, S443, yjdJ"
                     /listLong="yjzH"
                     /label="promotor_-35"
     CDS             complement(1201813..1202061)
                     /gene="cotT"
                     /locus_tag="BSU_12090"
                     /old_locus_tag="BSU12090"
                     /function="16.5: Explore"
                     /function="16.13: Shape"
                     /experiment="publication(s) with functional evidences,
                     PMID:1391045, 1917883, 19933362"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 1391045, 1917883,
                     19933362; Product type cp: cell process"
                     /codon_start=1
                     /transl_table=11
                     /product="spore coat protein (inner coat)"
                     /protein_id="NP_389091.2"
                     /db_xref="EnsemblGenomes-Gn:BSU12090"
                     /db_xref="EnsemblGenomes-Tr:CAB13066"
                     /db_xref="GOA:P11863"
                     /db_xref="SubtiList:BG10495"
                     /db_xref="UniProtKB/Swiss-Prot:P11863"
                     /translation="MDYPLNEQSFEQITPYDERQPYYYPRPRPPFYPPYYYPRPYYPF
                     YPFYPRPPYYYPRPRPPYYPWYGYGGGYGGGYGGGYGY*"
                     /label="cotT CDS"
     gene            complement(1201813..1202061)
                     /gene="cotT"
                     /locus_tag="BSU_12090"
                     /old_locus_tag="BSU12090"
                     /label="cotT gene"
     downshifts      complement(1201823)
                     /Source="Nicolas_upshifts"
                     /id="D668"
                     /incds=0
                     /nref=37
                     /ntot=82
                     /MaxReadThrough="5.73194"
                     /MaxDrop="6.23577"
                     /score="25.0951218"
                     /energy="-8.4"
                     /TU="U989"
                     /idTUdmin="U990"
                     /TUdmin=2
                     /isTUend="TRUE"
                     /label="downshifts"
     promotor_-35    1202057..1202061
                     /Source="Nicolas_upshift_promotors"
                     /id="U988"
                     /multdbtbs="-"
                     /comp="M15"
                     /sig="Sig-"
                     /pcomp=1
                     /psig=0
                     /xcortree=705
                     /SigmaFactorBS="gggtaatttgttcaaatgactgttcattcaaagggtaaTCCA
                     AgaggaaaaCCTCCCTAGCTTTTTttattccttttaccatattcctgatgcttaagtt
                     g"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    1202070..1202084
                     /Source="Nicolas_upshift_promotors"
                     /id="U988"
                     /multdbtbs="-"
                     /comp="M15"
                     /sig="Sig-"
                     /pcomp=1
                     /psig=0
                     /xcortree=705
                     /SigmaFactorBS="gggtaatttgttcaaatgactgttcattcaaagggtaaTCCA
                     AgaggaaaaCCTCCCTAGCTTTTTttattccttttaccatattcctgatgcttaagtt
                     g"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        1202079
                     /Source="Nicolas_upshifts"
                     /id="U988"
                     /multdbtbs="-"
                     /comp="M15"
                     /sig="Sig-"
                     /pcomp=1
                     /psig=0
                     /xcortree=705
                     /SigmaFactorBS="gggtaatttgttcaaatgactgttcattcaaagggtaaTCCA
                     AgaggaaaaCCTCCCTAGCTTTTTttattccttttaccatattcctgatgcttaagtt
                     g"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-10    complement(1202086..1202105)
                     /Source="Nicolas_upshift_promotors"
                     /id="U989"
                     /multdbtbs="SigK"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp=1
                     /psig=1
                     /xcortree=1278
                     /SigmaFactorBS="ataaaaaaaaccgaatttcatgaatgtACATACACCCaactt
                     aagcatcaGGAATATGGTAAAAGGAATAaaaaaagctagggaggttttcctcttggat
                     t"
                     /listShort="cotT, ctaO, S443"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(1202095)
                     /Source="Nicolas_upshifts"
                     /id="U989"
                     /multdbtbs="SigK"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp=1
                     /psig=1
                     /xcortree=1278
                     /SigmaFactorBS="ataaaaaaaaccgaatttcatgaatgtACATACACCCaactt
                     aagcatcaGGAATATGGTAAAAGGAATAaaaaaagctagggaggttttcctcttggat
                     t"
                     /listShort="cotT, ctaO, S443"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(1202119..1202128)
                     /Source="Nicolas_upshift_promotors"
                     /id="U989"
                     /multdbtbs="SigK"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp=1
                     /psig=1
                     /xcortree=1278
                     /SigmaFactorBS="ataaaaaaaaccgaatttcatgaatgtACATACACCCaactt
                     aagcatcaGGAATATGGTAAAAGGAATAaaaaaagctagggaggttttcctcttggat
                     t"
                     /listShort="cotT, ctaO, S443"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-35    1202176..1202183
                     /Source="Nicolas_upshift_promotors"
                     /id="U991"
                     /multdbtbs="-"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp="0.713286713286713"
                     /psig="0.994005994005994"
                     /xcortree=1545
                     /SigmaFactorBS="ttttatgatgaaattccttaaaaaggATTGACATgaacttct
                     aaatcTCATAGTATTACAAATGTGAaataaatgttactacaatgttacaaaaacattt
                     c"
                     /listShort="S445, yjeA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    complement(1202190..1202209)
                     /Source="Nicolas_upshift_promotors"
                     /id="U990"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.433566433566434"
                     /psig="0.684315684315684"
                     /xcortree=2052
                     /SigmaFactorBS="atctatttagaaatgtttttgtaacattgTAGTAACAtttat
                     ttcacattTGTAATACTATGAGATTTAGaagttcatgtcaatcctttttaaggaattt
                     c"
                     /listShort="cotT"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     promotor_-10    1202197..1202216
                     /Source="Nicolas_upshift_promotors"
                     /id="U991"
                     /multdbtbs="-"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp="0.713286713286713"
                     /psig="0.994005994005994"
                     /xcortree=1545
                     /SigmaFactorBS="ttttatgatgaaattccttaaaaaggATTGACATgaacttct
                     aaatcTCATAGTATTACAAATGTGAaataaatgttactacaatgttacaaaaacattt
                     c"
                     /listShort="S445, yjeA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(1202199)
                     /Source="Nicolas_upshifts"
                     /id="U990"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.433566433566434"
                     /psig="0.684315684315684"
                     /xcortree=2052
                     /SigmaFactorBS="atctatttagaaatgtttttgtaacattgTAGTAACAtttat
                     ttcacattTGTAATACTATGAGATTTAGaagttcatgtcaatcctttttaaggaattt
                     c"
                     /listShort="cotT"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     upshifts        1202210
                     /Source="Nicolas_upshifts"
                     /id="U991"
                     /multdbtbs="-"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp="0.713286713286713"
                     /psig="0.994005994005994"
                     /xcortree=1545
                     /SigmaFactorBS="ttttatgatgaaattccttaaaaaggATTGACATgaacttct
                     aaatcTCATAGTATTACAAATGTGAaataaatgttactacaatgttacaaaaacattt
                     c"
                     /listShort="S445, yjeA"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     S_feature       1202211..1202314
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1281024_1281127"
                     /HighExp="Heat, T0.30H, T1.0H, ferm, Diami, dia5, T1.30H,
                     M9-stat, T3.0H, T2.30H"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.994"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S445"
     promotor_-35    complement(1202223..1202230)
                     /Source="Nicolas_upshift_promotors"
                     /id="U990"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.433566433566434"
                     /psig="0.684315684315684"
                     /xcortree=2052
                     /SigmaFactorBS="atctatttagaaatgtttttgtaacattgTAGTAACAtttat
                     ttcacattTGTAATACTATGAGATTTAGaagttcatgtcaatcctttttaaggaattt
                     c"
                     /listShort="cotT"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             1202315..1203718
                     /gene="pdaC"
                     /locus_tag="BSU_12100"
                     /old_locus_tag="BSU12100"
                     /function="16.6: Maintain"
                     /experiment="publication(s) with functional evidences,
                     PMID:14679227, 17878218, 22277649"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 14679227, 17878218,
                     22277649; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylmuramic acid deacetylase"
                     /protein_id="NP_389092.1"
                     /db_xref="EnsemblGenomes-Gn:BSU12100"
                     /db_xref="EnsemblGenomes-Tr:CAB13067"
                     /db_xref="GOA:O34798"
                     /db_xref="InterPro:IPR002509"
                     /db_xref="InterPro:IPR011330"
                     /db_xref="InterPro:IPR017219"
                     /db_xref="InterPro:IPR021729"
                     /db_xref="InterPro:IPR025303"
                     /db_xref="InterPro:IPR037126"
                     /db_xref="SubtiList:BG13184"
                     /db_xref="UniProtKB/Swiss-Prot:O34798"
                     /translation="MLAKRIKWFHVLIAVVCVVGLIGFFHNHSLKKETVMNKVRTDSQ
                     YGNVEIATLVNDGKTFNYAVNYPVFKNEKMDSALKRFAEKEVRQFQKETKDVDQEHTT
                     KRNELNVDYKIVHYAKQTVAIVFNEYKYIGGAHGQTVKKTFNYDFSKQAFLSIDDIFK
                     EDADYLHKLSLIAYHELKKNKDIAADDALLKEGTAPKKENFSRFAIKEDYIELYFDTY
                     QVAAGYLGEQSIAIKKSLLKDILKEQYIDKAKNKNKIKEQKPKHEVISLPKEETVDPN
                     QKVIALTFDDGPNPATTNQILDSLKKYKGHATFFVLGSRVQYYPETLIRMLKEGNEVG
                     NHSWSHPLLTRLSVKEALKQINDTQDIIEKISGYRPTLVRPPYGGINDELRSQMKMDV
                     ALWDVDPEDWKDRNKKTIVDRVMNQAGDGRTILIHDIYRTSADAADEIIKKLTDQGYQ
                     LVTVSQLEEVKKQREAK*"
                     /label="pdaC CDS"
     gene            1202315..1203718
                     /gene="pdaC"
                     /locus_tag="BSU_12100"
                     /old_locus_tag="BSU12100"
                     /label="pdaC gene"
     downshifts      1203707
                     /Source="Nicolas_upshifts"
                     /id="D669"
                     /incds=0
                     /nref=173
                     /ntot=238
                     /MaxReadThrough="1.38483"
                     /MaxDrop="6.60322"
                     /score="39.935002"
                     /energy="-13.8"
                     /TU="NA"
                     /idTUdmin="U991"
                     /TUdmin=0
                     /isTUend="TRUE"
                     /label="downshifts"
     CDS             complement(1203758..1204231)
                     /gene="yjfA"
                     /locus_tag="BSU_12110"
                     /old_locus_tag="BSU12110"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved hypothetical protein"
                     /protein_id="NP_389093.1"
                     /db_xref="EnsemblGenomes-Gn:BSU12110"
                     /db_xref="EnsemblGenomes-Tr:CAB13068"
                     /db_xref="InterPro:IPR021224"
                     /db_xref="SubtiList:BG13185"
                     /db_xref="UniProtKB/Swiss-Prot:O34554"
                     /translation="MKRLFMKASLVLFAVVFVFAVKGAPAKAETHAYDGKSPYYNDCA
                     SSGSTKKSSNLVNASNQVIGVVELKFSSTCKTAWAKITMNNTLTSGYEANAEITRNTD
                     GKRYNCDSAGGNGKAVAGQKSCYTPMVYDLDPRTSYAFGKYSGPNLNVWATTGSY*"
                     /label="yjfA CDS"
     gene            complement(1203758..1204231)
                     /gene="yjfA"
                     /locus_tag="BSU_12110"
                     /old_locus_tag="BSU12110"
                     /label="yjfA gene"
     downshifts      complement(1203762)
                     /Source="Nicolas_upshifts"
                     /id="D670"
                     /incds=0
                     /nref=33
                     /ntot=176
                     /MaxReadThrough="2.25434"
                     /MaxDrop="5.38548"
                     /score="20.5383759"
                     /energy="-13.8"
                     /TU="NA"
                     /idTUdmin="U992"
                     /TUdmin="-1"
                     /isTUend="TRUE"
                     /label="downshifts"
     promotor_-10    complement(1204253..1204271)
                     /Source="Nicolas_upshift_promotors"
                     /id="U992"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.994005994005994"
                     /psig="0.994005994005994"
                     /xcortree=1105
                     /SigmaFactorBS="ctccatcctcccggccgcctttattgttcacaaaaaagcaTG
                     CATGttttgattgttcctCCATATGATTTATTGTTTGccatattaaggaggtcataaa
                     t"
                     /listShort="yjfA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(1204271)
                     /Source="Nicolas_upshifts"
                     /id="U992"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.994005994005994"
                     /psig="0.994005994005994"
                     /xcortree=1105
                     /SigmaFactorBS="ctccatcctcccggccgcctttattgttcacaaaaaagcaTG
                     CATGttttgattgttcctCCATATGATTTATTGTTTGccatattaaggaggtcataaa
                     t"
                     /listShort="yjfA"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(1204286..1204291)
                     /Source="Nicolas_upshift_promotors"
                     /id="U992"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.994005994005994"
                     /psig="0.994005994005994"
                     /xcortree=1105
                     /SigmaFactorBS="ctccatcctcccggccgcctttattgttcacaaaaaagcaTG
                     CATGttttgattgttcctCCATATGATTTATTGTTTGccatattaaggaggtcataaa
                     t"
                     /listShort="yjfA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             complement(1204356..1204523)
                     /gene="yjfB"
                     /locus_tag="BSU_12120"
                     /old_locus_tag="BSU12120"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms; PubMedId: 15033535"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved hypothetical protein"
                     /protein_id="NP_389094.1"
                     /db_xref="EnsemblGenomes-Gn:BSU12120"
                     /db_xref="EnsemblGenomes-Tr:CAB13069"
                     /db_xref="InterPro:IPR025906"
                     /db_xref="SubtiList:BG13186"
                     /db_xref="UniProtKB/Swiss-Prot:O34438"
                     /translation="MDIPALSVAMHQASLAQNVNIALTKKRLDTAQQNADQTLKMIQH
                     PTLGQTIDVKA*"
                     /label="yjfB CDS"
     gene            complement(1204356..1204523)
                     /gene="yjfB"
                     /locus_tag="BSU_12120"
                     /old_locus_tag="BSU12120"
                     /label="yjfB gene"
     downshifts      complement(1204359)
                     /Source="Nicolas_upshifts"
                     /id="D671"
                     /incds=0
                     /nref=109
                     /ntot=232
                     /MaxReadThrough="3.53249"
                     /MaxDrop="4.93218"
                     /score="-9.08395816"
                     /energy="-13.9"
                     /TU="U993"
                     /idTUdmin="U993"
                     /TUdmin="-576"
                     /isTUend="FALSE"
                     /label="downshifts"
     promotor_-10    complement(1204535..1204553)
                     /Source="Nicolas_upshift_promotors"
                     /id="U993"
                     /multdbtbs="SigD"
                     /comp="M10"
                     /sig="SigD"
                     /pcomp=1
                     /psig=1
                     /xcortree=2829
                     /SigmaFactorBS="gggtcaacaagagaaattaagccatttttcaCTGTAAAAtca
                     tacaaacccGCCGATAGGTAAGGCATAGgaggtggaaccatggatattcctgctttat
                     c"
                     /listShort="yjfB, yjfA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(1204544)
                     /Source="Nicolas_upshifts"
                     /id="U993"
                     /multdbtbs="SigD"
                     /comp="M10"
                     /sig="SigD"
                     /pcomp=1
                     /psig=1
                     /xcortree=2829
                     /SigmaFactorBS="gggtcaacaagagaaattaagccatttttcaCTGTAAAAtca
                     tacaaacccGCCGATAGGTAAGGCATAGgaggtggaaccatggatattcctgctttat
                     c"
                     /listShort="yjfB, yjfA"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(1204566..1204573)
                     /Source="Nicolas_upshift_promotors"
                     /id="U993"
                     /multdbtbs="SigD"
                     /comp="M10"
                     /sig="SigD"
                     /pcomp=1
                     /psig=1
                     /xcortree=2829
                     /SigmaFactorBS="gggtcaacaagagaaattaagccatttttcaCTGTAAAAtca
                     tacaaacccGCCGATAGGTAAGGCATAGgaggtggaaccatggatattcctgctttat
                     c"
                     /listShort="yjfB, yjfA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             1204650..1205549
                     /gene="yjfC"
                     /locus_tag="BSU_12130"
                     /old_locus_tag="BSU12130"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved hypothetical protein"
                     /protein_id="NP_389095.2"
                     /db_xref="EnsemblGenomes-Gn:BSU12130"
                     /db_xref="EnsemblGenomes-Tr:CAB13070"
                     /db_xref="InterPro:IPR018728"
                     /db_xref="SubtiList:BG13187"
                     /db_xref="UniProtKB/Swiss-Prot:O34458"
                     /translation="MNLVMEKTFEQYEKLFSMEEQKREDVFRYTMMRPFEKMWTAIQV
                     PLKAKEPNGYDVIMAAKMLGYLDVRDAESGQKALQILKESHVSETAESALRQCIFFAE
                     REQLRVNAKEIKFGLYIADPNKLQLQKGYCGFGGIPGFIHVWINPNSYNLPRIPSIIA
                     HEFHHNVRFSYIDFHHGSVSVGDYLVIEGLAESFARELFGTERLGPWVTRFDHEDLQY
                     SIDVINEVLDVKGFSEVSRYMFGDPIANDQGFKPAGLSAFAGYAVGYHAVQSFMNQHH
                     ITISEATRLDAKTIISQCGLFST*"
                     /label="yjfC CDS"
     gene            1204650..1205549
                     /gene="yjfC"
                     /locus_tag="BSU_12130"
                     /old_locus_tag="BSU12130"
                     /label="yjfC gene"
     CDS             complement(1205558..1205956)
                     /gene="yjgA"
                     /locus_tag="BSU_12140"
                     /old_locus_tag="BSU12140"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms; PubMedId: 15849754, 16850406"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved membrane protein"
                     /protein_id="NP_389096.1"
                     /db_xref="EnsemblGenomes-Gn:BSU12140"
                     /db_xref="EnsemblGenomes-Tr:CAB13071"
                     /db_xref="GOA:O35027"
                     /db_xref="InterPro:IPR021257"
                     /db_xref="SubtiList:BG13188"
                     /db_xref="UniProtKB/Swiss-Prot:O35027"
                     /translation="MKRNRWIYAVFTILIIGLGLGSRAFSSVLPDTLNTYLGDSLWAA
                     MIFTGCGFLFRKLKTMITGIISLSFCFVIEFSQLYHAEWIDQIRDTSLGGLVLGYGFL
                     WSDIEAYTIGIAACAAIELLVLGIKKRRCM*"
                     /label="yjgA CDS"
     gene            complement(1205558..1205956)
                     /gene="yjgA"
                     /locus_tag="BSU_12140"
                     /old_locus_tag="BSU12140"
                     /label="yjgA gene"
     downshifts      complement(1205588)
                     /Source="Nicolas_upshifts"
                     /id="D672"
                     /incds=0
                     /nref=2
                     /ntot=27
                     /MaxReadThrough="2.86089"
                     /MaxDrop="2.52307"
                     /score="23.8106216"
                     /energy="-10.1"
                     /TU="U994,U995"
                     /idTUdmin="U995"
                     /TUdmin="-243"
                     /isTUend="FALSE"
                     /label="downshifts"
     promotor_-10    complement(1205985..1206004)
                     /Source="Nicolas_upshift_promotors"
                     /id="U994"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.915084915084915"
                     /psig=1
                     /xcortree=1954
                     /SigmaFactorBS="caaaataaacaccctacgcggctattcagccgctttttTAGT
                     GGACaaataaaagctataTTCCTTACAATACAGGGAGAtgaagcagagacggggtatc
                     a"
                     /listShort="yjgA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(1206004)
                     /Source="Nicolas_upshifts"
                     /id="U994"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.915084915084915"
                     /psig=1
                     /xcortree=1954
                     /SigmaFactorBS="caaaataaacaccctacgcggctattcagccgctttttTAGT
                     GGACaaataaaagctataTTCCTTACAATACAGGGAGAtgaagcagagacggggtatc
                     a"
                     /listShort="yjgA"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(1206019..1206026)
                     /Source="Nicolas_upshift_promotors"
                     /id="U994"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.915084915084915"
                     /psig=1
                     /xcortree=1954
                     /SigmaFactorBS="caaaataaacaccctacgcggctattcagccgctttttTAGT
                     GGACaaataaaagctataTTCCTTACAATACAGGGAGAtgaagcagagacggggtatc
                     a"
                     /listShort="yjgA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             complement(1206057..1206632)
                     /gene="yjgB"
                     /locus_tag="BSU_12150"
                     /old_locus_tag="BSU12150"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 1580552"
                     /codon_start=1
                     /transl_table=11
                     /product="putative exported protein"
                     /protein_id="NP_389097.1"
                     /db_xref="EnsemblGenomes-Gn:BSU12150"
                     /db_xref="EnsemblGenomes-Tr:CAB13072"
                     /db_xref="InterPro:IPR025453"
                     /db_xref="PDB:4YGT"
                     /db_xref="SubtiList:BG13189"
                     /db_xref="UniProtKB/Swiss-Prot:O34960"
                     /translation="MKKTMSAITAAAAVTSCFTGFGAASFSAPAKAAAQTNTLSENTN
                     QSAAELVKNLYNTAYKGEMPQQAQGLTINKSTKGDVHAAFGEPERPVGGDNRFDLYHW
                     NMGQPGYGFSYHKDMTISEIRYFGTGVERQLNLGGVTPEVLQKQLGPVNRVLTVPFTD
                     EIDYVYDTGRYELHFVIGTDQTADHVNLKAK*"
                     /label="yjgB CDS"
     gene            complement(1206057..1206632)
                     /gene="yjgB"
                     /locus_tag="BSU_12150"
                     /old_locus_tag="BSU12150"
                     /label="yjgB gene"
     downshifts      complement(1206072)
                     /Source="Nicolas_upshifts"
                     /id="D673"
                     /incds=0
                     /nref=3
                     /ntot=16
                     /MaxReadThrough="5.38565"
                     /MaxDrop="3.9021"
                     /score="23.8106216"
                     /energy="-10.1"
                     /TU="U995"
                     /idTUdmin="U995"
                     /TUdmin="-727"
                     /isTUend="FALSE"
                     /label="downshifts"
     promotor_-10    complement(1206651..1206669)
                     /Source="Nicolas_upshift_promotors"
                     /id="U995"
                     /multdbtbs="SigB"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp=1
                     /psig=1
                     /xcortree=183
                     /SigmaFactorBS="tacaacaactcaataaaacatacaaagcgcactcacaTGTTT
                     CGttgcaaaaacacgGGGAAACGGAATGGTAGATcaattaggagggattaacatgaaa
                     a"
                     /listShort="yjgB, yjgA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(1206666)
                     /Source="Nicolas_upshifts"
                     /id="U995"
                     /multdbtbs="SigB"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp=1
                     /psig=1
                     /xcortree=183
                     /SigmaFactorBS="tacaacaactcaataaaacatacaaagcgcactcacaTGTTT
                     CGttgcaaaaacacgGGGAAACGGAATGGTAGATcaattaggagggattaacatgaaa
                     a"
                     /listShort="yjgB, yjgA"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(1206683..1206689)
                     /Source="Nicolas_upshift_promotors"
                     /id="U995"
                     /multdbtbs="SigB"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp=1
                     /psig=1
                     /xcortree=183
                     /SigmaFactorBS="tacaacaactcaataaaacatacaaagcgcactcacaTGTTT
                     CGttgcaaaaacacgGGGAAACGGAATGGTAGATcaattaggagggattaacatgaaa
                     a"
                     /listShort="yjgB, yjgA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-35    1206707..1206713
                     /Source="Nicolas_upshift_promotors"
                     /id="U996"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp=1
                     /psig=1
                     /xcortree=186
                     /SigmaFactorBS="ccgtgtttttgcaacgaaacatgtgagtgcgctttgtaTGTT
                     TTAttgagttgttgtaaGGGAACTGAAATAGGTAATtcggtatataaagcaagaaagg
                     g"
                     /listShort="yjgC, yjgD, S446, yjhA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    1206728..1206746
                     /Source="Nicolas_upshift_promotors"
                     /id="U996"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp=1
                     /psig=1
                     /xcortree=186
                     /SigmaFactorBS="ccgtgtttttgcaacgaaacatgtgagtgcgctttgtaTGTT
                     TTAttgagttgttgtaaGGGAACTGAAATAGGTAATtcggtatataaagcaagaaagg
                     g"
                     /listShort="yjgC, yjgD, S446, yjhA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        1206729
                     /Source="Nicolas_upshifts"
                     /id="U996"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp=1
                     /psig=1
                     /xcortree=186
                     /SigmaFactorBS="ccgtgtttttgcaacgaaacatgtgagtgcgctttgtaTGTT
                     TTAttgagttgttgtaaGGGAACTGAAATAGGTAATtcggtatataaagcaagaaagg
                     g"
                     /listShort="yjgC, yjgD, S446, yjhA"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             1206778..1209735
                     /gene="yjgC"
                     /locus_tag="BSU_12160"
                     /old_locus_tag="BSU12160"
                     /EC_number="1.2.1.-"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative molybdoenzyme; putative formate
                     dehydrogenase"
                     /protein_id="NP_389098.1"
                     /db_xref="EnsemblGenomes-Gn:BSU12160"
                     /db_xref="EnsemblGenomes-Tr:CAB13073"
                     /db_xref="GOA:O34720"
                     /db_xref="InterPro:IPR001041"
                     /db_xref="InterPro:IPR006478"
                     /db_xref="InterPro:IPR006656"
                     /db_xref="InterPro:IPR006657"
                     /db_xref="InterPro:IPR006963"
                     /db_xref="InterPro:IPR009010"
                     /db_xref="InterPro:IPR012675"
                     /db_xref="InterPro:IPR017896"
                     /db_xref="InterPro:IPR017900"
                     /db_xref="InterPro:IPR019574"
                     /db_xref="InterPro:IPR036010"
                     /db_xref="SubtiList:BG13190"
                     /db_xref="UniProtKB/Swiss-Prot:O34720"
                     /translation="MAGKKTITINGVEMEASEEQTVLQLLNNSSIEVPQVCYHPSLGP
                     IETCDTCIVSINGELKRSCSAELKDGDVIDTLSPDVKKAQVIGMDKILYNHELYCTVC
                     DYNNGGCEIHNTVKEMKINHQSIPFDHKPYHKDESHPFYRYDPDQCILCGRCVEACQD
                     VQVTETLTIDWERKRPRVIWDNDVPINESSCVSCGHCSTVCPCNAMMEKGMEGEAGYL
                     TGINNETLRPMIEITKGVETGYGSILAISDMESAMRDERIKKTKTVCTYCGVGCSFDV
                     WTKGRDILKVEPQEEAPANGISTCVKGKFGWDFVNSEERLTKPLIREGDHFREAEWEE
                     ALLLIASKFTELKEAFGPDSLAFITSSKCTNEESYLMQKLARGVIGTNNVDNCSRYCQ
                     SPATAGLFRTVGYGGDSGSITDIAQADLVLIIGSNTSESHPVLSTRIKRAHKLRGQKV
                     IVADIRKHEMAERSDLFVQPRAGSDIVWLNAIAKYLIENGKADERFLRERVNGRDEYV
                     KSLAPYTLEYAEEKTGIDQETLIQMAEMIGQADSVCALWAMGVTQHIGGSDTSTAISN
                     LLLVTGNYGKPGAGSYPLRGHNNVQGASDFGSMPDRLPGYEKVTDEQVRQKYERVWGV
                     PLPKEPGMTNHEMIEKIHSGQLKAMYVKGEEMGLVDSNINHVHAAYEKLDFFVVQDIF
                     LSRTAEFADVVLPASPSLEKEGTFTNTERRIQRLYQVFEPLGESKPDWQIIMEVANKL
                     GAGWLYEHPADIMEEAAKLSPIYAGVTYERLEGYNSLQWPVNADGKDSPLLFTERFPF
                     PDGKAILYPVQWTEPKEFGEEYDIHVNNGRLLEHFHEGNLTYKSKGISEKTPEVFLEI
                     SPELAAERGIQDGTLVRLTSPFGNVKVKCLITDRVKGKEVYLPMNDSGEAAINLLTGS
                     HADKDTDTPAYKETSAKMEILKHDGISPLPKINHRNGNPQPQIGVQVHKKWARKDYIF
                     PGDAVKRGMGHNG*"
                     /label="yjgC CDS"
     gene            1206778..1209735
                     /gene="yjgC"
                     /locus_tag="BSU_12160"
                     /old_locus_tag="BSU12160"
                     /label="yjgC gene"
     CDS             1209728..1210288
                     /gene="yjgD"
                     /locus_tag="BSU_12170"
                     /old_locus_tag="BSU12170"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved hypothetical protein"
                     /protein_id="NP_389099.1"
                     /db_xref="EnsemblGenomes-Gn:BSU12170"
                     /db_xref="EnsemblGenomes-Tr:CAB13074"
                     /db_xref="InterPro:IPR012440"
                     /db_xref="SubtiList:BG13191"
                     /db_xref="UniProtKB/Swiss-Prot:O34681"
                     /translation="MAKAIKRIQKIEVTEEDQRKRDLREIEDALIDHKEAILETLHML
                     GHMNERGVLPLLRGLFGQGDKVLDILVKKADTEETANTLKNLLLLFGTLGMLDVKQLE
                     PLILKVNAGVASAVEQKNSEEKTGYFDIIRSLKDPEINKSITLLFSFLKGMGQDTKEL
                     ERTTQPPEHQKHHQEPREKRGMNKRD*"
                     /label="yjgD CDS"
     gene            1209728..1210288
                     /gene="yjgD"
                     /locus_tag="BSU_12170"
                     /old_locus_tag="BSU12170"
                     /label="yjgD gene"
     downshifts      1210281
                     /Source="Nicolas_upshifts"
                     /id="D674"
                     /incds=0
                     /nref=18
                     /ntot=84
                     /MaxReadThrough="5.25706"
                     /MaxDrop="6.46184"
                     /score="20.7921843"
                     /energy="-15"
                     /TU="U996"
                     /idTUdmin="U996"
                     /TUdmin="-819"
                     /isTUend="FALSE"
                     /label="downshifts"
     S_feature       1210326..1210444
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1289139_1289257"
                     /HighExp="Etha, Salt, Heat, S8, M9-stat, S7, LPhT, G135,
                     C30, Sw"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigB"
                     /TUshortPSig=1
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S446"
     promotor_-35    1210422..1210425
                     /Source="Nicolas_upshift_promotors"
                     /id="U997"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.779220779220779"
                     /psig="0.998001998001998"
                     /xcortree=2980
                     /SigmaFactorBS="tgatgaatgagatagaaataatcgttactttcttacCTGTta
                     agaaaagggaaaaTCTGATTATAATAGAAATCGattactttagatgggggaacaatca
                     t"
                     /listShort="yjhA, yjhB"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    1210441..1210460
                     /Source="Nicolas_upshift_promotors"
                     /id="U997"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.779220779220779"
                     /psig="0.998001998001998"
                     /xcortree=2980
                     /SigmaFactorBS="tgatgaatgagatagaaataatcgttactttcttacCTGTta
                     agaaaagggaaaaTCTGATTATAATAGAAATCGattactttagatgggggaacaatca
                     t"
                     /listShort="yjhA, yjhB"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        1210446
                     /Source="Nicolas_upshifts"
                     /id="U997"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.779220779220779"
                     /psig="0.998001998001998"
                     /xcortree=2980
                     /SigmaFactorBS="tgatgaatgagatagaaataatcgttactttcttacCTGTta
                     agaaaagggaaaaTCTGATTATAATAGAAATCGattactttagatgggggaacaatca
                     t"
                     /listShort="yjhA, yjhB"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             1210485..1211126
                     /gene="yjhA"
                     /locus_tag="BSU_12180"
                     /old_locus_tag="BSU12180"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; Product type lp: lipoprotein"
                     /codon_start=1
                     /transl_table=11
                     /product="putative lipoprotein"
                     /protein_id="NP_389100.1"
                     /db_xref="EnsemblGenomes-Gn:BSU12180"
                     /db_xref="EnsemblGenomes-Tr:CAB13075"
                     /db_xref="GOA:O34725"
                     /db_xref="InterPro:IPR029050"
                     /db_xref="InterPro:IPR029051"
                     /db_xref="PDB:3CFU"
                     /db_xref="SubtiList:BG13192"
                     /db_xref="UniProtKB/Swiss-Prot:O34725"
                     /translation="MKKVLLLLFVLTIGLALSACSQSSDASEKEKPKEKKSQEELEKE
                     LDKELKKGGEPKTKKDDQIHKIGETFKAGHTNFTVNKVDRVQKGEYMNVGGAVNEETK
                     TIKDDEERLIIEVTMENIGEDSISYNFIGFDLRDKNDQSVRPVFSIEEKGRILMGGTL
                     VSGKKVTGVLSYVIPKGEQKHYTLVYNPFLADTNSSNTEERVKDDIDYLVKLD*"
                     /label="yjhA CDS"
     gene            1210485..1211126
                     /gene="yjhA"
                     /locus_tag="BSU_12180"
                     /old_locus_tag="BSU12180"
                     /label="yjhA gene"
     downshifts      complement(1210494)
                     /Source="Nicolas_upshifts"
                     /id="D675"
                     /incds=0
                     /nref=7
                     /ntot=57
                     /MaxReadThrough="2.5769"
                     /MaxDrop="3.81596"
                     /score="-9.34186213"
                     /energy="-3"
                     /TU="NA"
                     /idTUdmin="U998"
                     /TUdmin=1386
                     /isTUend="FALSE"
                     /label="downshifts"
     downshifts      1211099
                     /Source="Nicolas_upshifts"
                     /id="D676"
                     /incds=0
                     /nref=24
                     /ntot=186
                     /MaxReadThrough="4.29897"
                     /MaxDrop="3.4683"
                     /score="19.6571267"
                     /energy="-17"
                     /TU="U997"
                     /idTUdmin="U996"
                     /TUdmin="-1"
                     /isTUend="TRUE"
                     /label="downshifts"
     CDS             1211205..1211831
                     /gene="yjhB"
                     /locus_tag="BSU_12190"
                     /old_locus_tag="BSU12190"
                     /EC_number="3.6.1.-"
                     /function="16.6: Maintain"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 12483591, 16513759;
                     Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative ADP-ribose pyrophosphatase"
                     /protein_id="NP_389101.2"
                     /db_xref="EnsemblGenomes-Gn:BSU12190"
                     /db_xref="EnsemblGenomes-Tr:CAB13076"
                     /db_xref="GOA:C0SPC3"
                     /db_xref="InterPro:IPR000086"
                     /db_xref="InterPro:IPR015797"
                     /db_xref="SubtiList:BG13193"
                     /db_xref="UniProtKB/Swiss-Prot:C0SPC3"
                     /translation="MIKVQTKWLERAQRIRAIAQAGLAFSKDVYDRERYEELMKLSAE
                     MMADYSEKDIEVITDLWQGEKGYPTPKADVRGAVFRENQILLVREKHDELWSLPGGFC
                     EIGLSPAENVVKEIKEESGYDTEPSRLLAVLDSHKHSHPPQPYHYYKIFIACSMTDGQ
                     GETGIETNHAAFFPEDRLPPLSPKRNTPSQLSMLFDFLRHPDKKTIFD*"
                     /label="yjhB CDS"
     gene            1211205..1211831
                     /gene="yjhB"
                     /locus_tag="BSU_12190"
                     /old_locus_tag="BSU12190"
                     /label="yjhB gene"
     downshifts      1211833
                     /Source="Nicolas_upshifts"
                     /id="D677"
                     /incds=0
                     /nref=97
                     /ntot=202
                     /MaxReadThrough="0.597580000000001"
                     /MaxDrop="6.62023"
                     /score="12.2319602"
                     /energy="-7"
                     /TU="NA"
                     /idTUdmin="U997"
                     /TUdmin=7
                     /isTUend="TRUE"
                     /label="downshifts"
     downshifts      complement(1211836)
                     /Source="Nicolas_upshifts"
                     /id="D678"
                     /incds=0
                     /nref=1
                     /ntot=9
                     /MaxReadThrough="0.18907"
                     /MaxDrop="3.31161"
                     /score="10.5815896"
                     /energy="-7"
                     /TU="NA"
                     /idTUdmin="U998"
                     /TUdmin=44
                     /isTUend="FALSE"
                     /label="downshifts"
     CDS             complement(1211862..1212140)
                     /gene="yjiA"
                     /locus_tag="BSU_12200"
                     /old_locus_tag="BSU12200"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 5: Unknown function; PubMedId : 14563871"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="NP_389102.1"
                     /db_xref="EnsemblGenomes-Gn:BSU12200"
                     /db_xref="EnsemblGenomes-Tr:CAB13077"
                     /db_xref="SubtiList:BG13194"
                     /db_xref="UniProtKB/Swiss-Prot:O34679"
                     /translation="MAAQTDYKKQVVGILLSLAFVLFVFSFSERHEKPLVEGKKQENW
                     HTVVDKASVKIYGSRLVEENKLKQKLGHKQADSILTLLKLANEKHITL*"
                     /label="yjiA CDS"
     gene            complement(1211862..1212140)
                     /gene="yjiA"
                     /locus_tag="BSU_12200"
                     /old_locus_tag="BSU12200"
                     /label="yjiA gene"
     downshifts      complement(1211880)
                     /Source="Nicolas_upshifts"
                     /id="D679"
                     /incds=0
                     /nref=162
                     /ntot=247
                     /MaxReadThrough="1.96302"
                     /MaxDrop="5.98058"
                     /score="10.5815896"
                     /energy="-7"
                     /TU="NA"
                     /idTUdmin="U998"
                     /TUdmin=0
                     /isTUend="TRUE"
                     /label="downshifts"
     promotor_-10    complement(1212169..1212180)
                     /Source="Nicolas_upshift_promotors"
                     /id="U998"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.632367632367632"
                     /psig="0.972027972027972"
                     /xcortree=575
                     /SigmaFactorBS="gtctctgttttcaaccaaatgcactaactccaaaaatgactt
                     tcccattatgtaaaataaTTTGGTTcTATGATTAAATAgaaggtaaaaggtgaaggag
                     a"
                     /listShort="yjiA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     promotor_-35    complement(1212182..1212188)
                     /Source="Nicolas_upshift_promotors"
                     /id="U998"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.632367632367632"
                     /psig="0.972027972027972"
                     /xcortree=575
                     /SigmaFactorBS="gtctctgttttcaaccaaatgcactaactccaaaaatgactt
                     tcccattatgtaaaataaTTTGGTTcTATGATTAAATAgaaggtaaaaggtgaaggag
                     a"
                     /listShort="yjiA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     upshifts        complement(1212188)
                     /Source="Nicolas_upshifts"
                     /id="U998"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.632367632367632"
                     /psig="0.972027972027972"
                     /xcortree=575
                     /SigmaFactorBS="gtctctgttttcaaccaaatgcactaactccaaaaatgactt
                     tcccattatgtaaaataaTTTGGTTcTATGATTAAATAgaaggtaaaaggtgaaggag
                     a"
                     /listShort="yjiA"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     S_feature       complement(1212190..1212606)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1291003_1291419_c"
                     /HighExp="S6, S7, S8, S5, BT, C30, Pyr, G/S, C90, B36"
                     /AntisenseName="yjiB"
                     /AntisenseCor="-0.25565388711625397"
                     /AntisenseRegPval="-4.7"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigK"
                     /TUshortPSig=1
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S447"
     upshifts        1212358
                     /Source="Nicolas_upshifts"
                     /id="U999"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.766233766233766"
                     /psig=1
                     /xcortree=3183
                     /SigmaFactorBS="tatgcctaaggtcacgttgtgagccaaaacagcagtgcagaa
                     tagaaaaaaattgaaagatTATGGTAAGATGAACGAAATtcgagggggaatatatgat
                     g"
                     /listShort="S448, yjiB, yjiC"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     misc_feature    1212359..1212378
                     /Source="Nicolas_upshift_promotors"
                     /id="U999"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.766233766233766"
                     /psig=1
                     /xcortree=3183
                     /SigmaFactorBS="tatgcctaaggtcacgttgtgagccaaaacagcagtgcagaa
                     tagaaaaaaattgaaagatTATGGTAAGATGAACGAAATtcgagggggaatatatgat
                     g"
                     /listShort="S448, yjiB, yjiC"
                     /GFF_Attribute="listLong"
                     /label="promotor_single_box"
                     /note="Geneious type: promotor_single_box"
     S_feature       1212376..1212530
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1291189_1291343"
                     /HighExp="BC, T5.0H, T4.0H, C90, Sw, T3.30H, Lbstat,
                     Diami, dia5, S2"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="0.995811"
                     /TUshortSig="SigA"
                     /TUshortPSig=1
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S448"
     CDS             1212531..1213721
                     /gene="cypE"
                     /locus_tag="BSU_12210"
                     /old_locus_tag="BSU12210"
                     /EC_number="1.14.-.-"
                     /function="16.11: Scavenge (Catabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:25587700"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 25587700; Product type e:
                     enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome P450 CYP109B1, monooxygenase"
                     /protein_id="NP_389103.1"
                     /db_xref="EnsemblGenomes-Gn:BSU12210"
                     /db_xref="EnsemblGenomes-Tr:CAB13078"
                     /db_xref="GOA:O34374"
                     /db_xref="InterPro:IPR001128"
                     /db_xref="InterPro:IPR002397"
                     /db_xref="InterPro:IPR017972"
                     /db_xref="InterPro:IPR036396"
                     /db_xref="PDB:4RM4"
                     /db_xref="SubtiList:BG13195"
                     /db_xref="UniProtKB/Swiss-Prot:O34374"
                     /translation="MNVLNRRQALQRALLNGKNKQDAYHPFPWYESMRKDAPVSFDEE
                     NQVWSVFLYDDVKKVVGDKELFSSCMPQQTSSIGNSIINMDPPKHTKIRSVVNKAFTP
                     RVMKQWEPRIQEITDELIQKFQGRSEFDLVHDFSYPLPVIVISELLGVPSAHMEQFKA
                     WSDLLVSTPKDKSEEAEKAFLEERDKCEEELAAFFAGIIEEKRNKPEQDIISILVEAE
                     ETGEKLSGEELIPFCTLLLVAGNETTTNLISNAMYSILETPGVYEELRSHPELMPQAV
                     EEALRFRAPAPVLRRIAKRDTEIGGHLIKEGDMVLAFVASANRDEAKFDRPHMFDIRR
                     HPNPHIAFGHGIHFCLGAPLARLEANIALTSLISAFPHMECVSITPIENSVIYGLKSF
                     RVKM*"
                     /label="cypE CDS"
     gene            1212531..1213721
                     /gene="cypE"
                     /locus_tag="BSU_12210"
                     /old_locus_tag="BSU12210"
                     /label="cypE gene"
     promotor_-10    complement(1212604..1212623)
                     /Source="Nicolas_upshift_promotors"
                     /id="U1000"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp=1
                     /psig=1
                     /xcortree=1374
                     /SigmaFactorBS="ggttttcttcatcaaaggaaACAGGCGCATcctttctcatcg
                     aTTCATACCATGGAAACGGATgatacgcatcctgtttgtttttcccattgagcagcgc
                     t"
                     /listShort="S447, yjiA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(1212606)
                     /Source="Nicolas_upshifts"
                     /id="U1000"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp=1
                     /psig=1
                     /xcortree=1374
                     /SigmaFactorBS="ggttttcttcatcaaaggaaACAGGCGCATcctttctcatcg
                     aTTCATACCATGGAAACGGATgatacgcatcctgtttgtttttcccattgagcagcgc
                     t"
                     /listShort="S447, yjiA"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(1212637..1212646)
                     /Source="Nicolas_upshift_promotors"
                     /id="U1000"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp=1
                     /psig=1
                     /xcortree=1374
                     /SigmaFactorBS="ggttttcttcatcaaaggaaACAGGCGCATcctttctcatcg
                     aTTCATACCATGGAAACGGATgatacgcatcctgtttgtttttcccattgagcagcgc
                     t"
                     /listShort="S447, yjiA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             1213744..1214922
                     /gene="ppuG"
                     /locus_tag="BSU_12220"
                     /old_locus_tag="BSU12220"
                     /EC_number="2.4.1.-"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 1c: Function from experimental evidences
                     in the studied genus; PubMedId: 24893262, 27444326;
                     Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="polyphenols TDP-rhamnosyltransferase,
                     promiscuous"
                     /protein_id="NP_389104.1"
                     /db_xref="EnsemblGenomes-Gn:BSU12220"
                     /db_xref="EnsemblGenomes-Tr:CAB13079"
                     /db_xref="GOA:O34539"
                     /db_xref="InterPro:IPR002213"
                     /db_xref="InterPro:IPR006326"
                     /db_xref="InterPro:IPR007235"
                     /db_xref="SubtiList:BG13196"
                     /db_xref="UniProtKB/Swiss-Prot:O34539"
                     /translation="MKKYHISMINIPAYGHVNPTLALVEKLCEKGHRVTYATTEEFAP
                     AVQQAGGEALIYHTSLNIDPKQIREMMEKNDAPLSLLKESLSILPQLEELYKDDQPDL
                     IIYDFVALAGKLFAEKLNVPVIKLCSSYAQNESFQLGNEDMLKKIREAEAEFKAYLEQ
                     EKLPAVSFEQLAVPEALNIVFMPKSFQIQHETFDDRFCFVGPSLGERKEKESLLIDKD
                     DRPLMLISLGTAFNAWPEFYKMCIKAFRDSSWQVIMSVGKTIDPESLEDIPANFTIRQ
                     SVPQLEVLEKADLFISHGGMNSTMEAMNAGVPLVVIPQMYEQELTANRVDELGLGVYL
                     PKEEVTVSSLQEAVQAVSSDQELLSRVKNMQKDVKEAGGAERAAAEIEAFMKKSAVPQ
                     *"
                     /label="ppuG CDS"
     gene            1213744..1214922
                     /gene="ppuG"
                     /locus_tag="BSU_12220"
                     /old_locus_tag="BSU12220"
                     /label="ppuG gene"
     CDS             complement(1214963..1215151)
                     /gene="yjzI"
                     /locus_tag="BSU_12229"
                     /old_locus_tag="BSU12229"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences"
                     /codon_start=1
                     /transl_table=11
                     /product="putative phage protein"
                     /protein_id="YP_003097710.1"
                     /db_xref="EnsemblGenomes-Gn:BSU12229"
                     /db_xref="EnsemblGenomes-Tr:CAX52600"
                     /db_xref="UniProtKB/Swiss-Prot:C0H3Z3"
                     /translation="METKKEEYETKGYDTSIVYEFNEYPDARSGRCDNCDYTLFKSSV
                     KGGKFLRECRRCGMKKNI*"
                     /label="yjzI CDS"
     gene            complement(1214963..1215151)
                     /gene="yjzI"
                     /locus_tag="BSU_12229"
                     /old_locus_tag="BSU12229"
                     /label="yjzI gene"
     downshifts      complement(1214979)
                     /Source="Nicolas_upshifts"
                     /id="D680"
                     /incds=0
                     /nref=94
                     /ntot=231
                     /MaxReadThrough="-0.1433"
                     /MaxDrop="5.1712"
                     /score="13.0160925"
                     /energy="-9.5"
                     /TU="NA"
                     /idTUdmin="U1001"
                     /TUdmin=3
                     /isTUend="TRUE"
                     /label="downshifts"
     promotor_-10    complement(1215177..1215196)
                     /Source="Nicolas_upshift_promotors"
                     /id="U1001"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.34965034965035"
                     /psig="0.993006993006993"
                     /xcortree=2410
                     /SigmaFactorBS="agataaacccaacctcctaaaatcCATTGAAtacgccggaag
                     ctTGCTGTAAGATAAACAGCAGacacgtcttgtaacggaggatcgacatggaaaccaa
                     a"
                     /listShort="yjzI"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(1215180)
                     /Source="Nicolas_upshifts"
                     /id="U1001"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.34965034965035"
                     /psig="0.993006993006993"
                     /xcortree=2410
                     /SigmaFactorBS="agataaacccaacctcctaaaatcCATTGAAtacgccggaag
                     ctTGCTGTAAGATAAACAGCAGacacgtcttgtaacggaggatcgacatggaaaccaa
                     a"
                     /listShort="yjzI"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(1215210..1215216)
                     /Source="Nicolas_upshift_promotors"
                     /id="U1001"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.34965034965035"
                     /psig="0.993006993006993"
                     /xcortree=2410
                     /SigmaFactorBS="agataaacccaacctcctaaaatcCATTGAAtacgccggaag
                     ctTGCTGTAAGATAAACAGCAGacacgtcttgtaacggaggatcgacatggaaaccaa
                     a"
                     /listShort="yjzI"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-35    1215238..1215245
                     /Source="Nicolas_upshift_promotors"
                     /id="U1002"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.356643356643357"
                     /psig="0.982017982017982"
                     /xcortree=2379
                     /SigmaFactorBS="tcaatggattttaggaggttgggtttaTCTTGATTtctccct
                     tggtttgCGCCAAAATAGCTTTATTAAgcttatatacataaaaagcctatgcaaagag
                     g"
                     /listShort="yjjA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    1215260..1215279
                     /Source="Nicolas_upshift_promotors"
                     /id="U1002"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.356643356643357"
                     /psig="0.982017982017982"
                     /xcortree=2379
                     /SigmaFactorBS="tcaatggattttaggaggttgggtttaTCTTGATTtctccct
                     tggtttgCGCCAAAATAGCTTTATTAAgcttatatacataaaaagcctatgcaaagag
                     g"
                     /listShort="yjjA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        1215271
                     /Source="Nicolas_upshifts"
                     /id="U1002"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.356643356643357"
                     /psig="0.982017982017982"
                     /xcortree=2379
                     /SigmaFactorBS="tcaatggattttaggaggttgggtttaTCTTGATTtctccct
                     tggtttgCGCCAAAATAGCTTTATTAAgcttatatacataaaaagcctatgcaaagag
                     g"
                     /listShort="yjjA"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-10    complement(1215286..1215305)
                     /Source="Nicolas_upshift_promotors"
                     /id="U1003"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp="0.868131868131868"
                     /psig="0.868131868131868"
                     /xcortree=1376
                     /SigmaFactorBS="cgttttccaagtaacccttttccCATACCCGtttcctctcct
                     cttTGCATAGGCTTTTTATGTATataagcttaataaagctattttggcgcaaaccaag
                     g"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(1215290)
                     /Source="Nicolas_upshifts"
                     /id="U1003"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp="0.868131868131868"
                     /psig="0.868131868131868"
                     /xcortree=1376
                     /SigmaFactorBS="cgttttccaagtaacccttttccCATACCCGtttcctctcct
                     cttTGCATAGGCTTTTTATGTATataagcttaataaagctattttggcgcaaaccaag
                     g"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(1215320..1215327)
                     /Source="Nicolas_upshift_promotors"
                     /id="U1003"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp="0.868131868131868"
                     /psig="0.868131868131868"
                     /xcortree=1376
                     /SigmaFactorBS="cgttttccaagtaacccttttccCATACCCGtttcctctcct
                     cttTGCATAGGCTTTTTATGTATataagcttaataaagctattttggcgcaaaccaag
                     g"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             1215325..1216137
                     /gene="yjjA"
                     /locus_tag="BSU_12230"
                     /old_locus_tag="BSU12230"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative enzyme"
                     /protein_id="NP_389105.1"
                     /db_xref="EnsemblGenomes-Gn:BSU12230"
                     /db_xref="EnsemblGenomes-Tr:CAB13080"
                     /db_xref="GOA:O34394"
                     /db_xref="InterPro:IPR003754"
                     /db_xref="InterPro:IPR036108"
                     /db_xref="SubtiList:BG13197"
                     /db_xref="UniProtKB/Swiss-Prot:O34394"
                     /translation="MGKGLLGKRVAIGGSRKTEEISTIIEKQGGIPVIRPLQGTVYLA
                     EKQVEPDLRTFAEEKADWVIFTTGIGLETLVDMAEKIGLKDEFLQAIRQAKAACRGYK
                     TLSALKKLGITPEASDEDGTTRGLIRSLEPHDFSGKTVMVQLHGEKAPALMAFLEEKG
                     ASVLPILPYQHIPPEEETVERLCRELMNDEVDAVCFTTAIQVRSLFDFAKGRGYINEV
                     KKVFEERAIAAAVGKVTAEALREEGITRLLAPEIERMGAMIVELAKYYEEKE*"
                     /label="yjjA CDS"
     gene            1215325..1216137
                     /gene="yjjA"
                     /locus_tag="BSU_12230"
                     /old_locus_tag="BSU12230"
                     /label="yjjA gene"
     downshifts      1216116
                     /Source="Nicolas_upshifts"
                     /id="D681"
                     /incds=0
                     /nref=196
                     /ntot=254
                     /MaxReadThrough="3.61369"
                     /MaxDrop="5.73094"
                     /score="10.6328997"
                     /energy="-14.5"
                     /TU="U1002"
                     /idTUdmin="U1002"
                     /TUdmin="-22"
                     /isTUend="TRUE"
                     /label="downshifts"
     CDS             complement(1216183..1216935)
                     /gene="yjkA"
                     /locus_tag="BSU_12240"
                     /old_locus_tag="BSU12240"
                     /function="16.1: Circulate"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 15849754, 16850406;
                     Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="putative ABC transporter (permease)"
                     /protein_id="NP_389106.1"
                     /db_xref="EnsemblGenomes-Gn:BSU12240"
                     /db_xref="EnsemblGenomes-Tr:CAB13081"
                     /db_xref="GOA:O34684"
                     /db_xref="InterPro:IPR005226"
                     /db_xref="SubtiList:BG13198"
                     /db_xref="UniProtKB/Swiss-Prot:O34684"
                     /translation="MDYLSLSLTMIFVLIALFLSKSFKAGVEKDMIIATIRAAVQLLI
                     IGYVLSLIFRGDHPVFILLMVLLMLAVAAQNVIKRKKNTIGSFWRVFAALAIVEIVTQ
                     GILLSLHIIPLTARYVIPISGMVIGNSMVLSSLFLNRLNSEVGVRKEEIQLILSLGGT
                     PKQSIQRILTSAMKMSMIPTLESQKTLGLVQLPGMMTGQILAGADPIQAVRFQLLIVF
                     TTMASAALTCVILSVLTYPSLFTVHQQLKQNE*"
                     /label="yjkA CDS"
     gene            complement(1216183..1216935)
                     /gene="yjkA"
                     /locus_tag="BSU_12240"
                     /old_locus_tag="BSU12240"
                     /label="yjkA gene"
     downshifts      complement(1216192)
                     /Source="Nicolas_upshifts"
                     /id="D682"
                     /incds=0
                     /nref=5
                     /ntot=153
                     /MaxReadThrough="0.924970000000001"
                     /MaxDrop="3.5673"
                     /score="13.1058081"
                     /energy="-12.8"
                     /TU="NA"
                     /idTUdmin="U1001"
                     /TUdmin="-1210"
                     /isTUend="FALSE"
                     /label="downshifts"
     CDS             complement(1216935..1217687)
                     /gene="yjkB"
                     /locus_tag="BSU_12250"
                     /old_locus_tag="BSU12250"
                     /function="16.1: Circulate"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="putative ABC transporter (ATP-binding protein)"
                     /protein_id="NP_389107.1"
                     /db_xref="EnsemblGenomes-Gn:BSU12250"
                     /db_xref="EnsemblGenomes-Tr:CAB13082"
                     /db_xref="GOA:O34756"
                     /db_xref="InterPro:IPR003439"
                     /db_xref="InterPro:IPR003593"
                     /db_xref="InterPro:IPR005670"
                     /db_xref="InterPro:IPR017871"
                     /db_xref="InterPro:IPR027417"
                     /db_xref="SubtiList:BG13199"
                     /db_xref="UniProtKB/Swiss-Prot:O34756"
                     /translation="MEANDQTQNIPAISFRSVRKSYKQDGQTYDVLQDVTGDIQQGAI
                     VAVLGPSGSGKSTLLSMCNLMRTPDSGEVNIYGKEVREWNVNELRRTAALAFQSAPVL
                     DGTVRDNLSLVQRLHQSQLYSPEKLASLAGLPPELLDRSARDLSGGQRQRLSLARTLS
                     NPSSILLLDEITSALDPVSALEIEELIKRQHQEKKWTVMWVTHNMEQAKRIADTIWFM
                     ADGRLLEIAETDTFFSAPQHEAAKEFLKGGTR*"
                     /label="yjkB CDS"
     gene            complement(1216935..1217687)
                     /gene="yjkB"
                     /locus_tag="BSU_12250"
                     /old_locus_tag="BSU12250"
                     /label="yjkB gene"
     CDS             complement(1217807..1218781)
                     /gene="yjlA"
                     /locus_tag="BSU_12260"
                     /old_locus_tag="BSU12260"
                     /function="16.1: Circulate"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 14627822, 15849754,
                     16850406; Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="putative permease"
                     /protein_id="NP_389108.1"
                     /db_xref="EnsemblGenomes-Gn:BSU12260"
                     /db_xref="EnsemblGenomes-Tr:CAB13083"
                     /db_xref="GOA:O34428"
                     /db_xref="InterPro:IPR032713"
                     /db_xref="SubtiList:BG13200"
                     /db_xref="UniProtKB/Swiss-Prot:O34428"
                     /translation="MKAIVIGILASLFFAVTFILNRAMELSGGSWLWSSSLRFIFMVP
                     FLCLIVIMRGTFTPLLLEMRKKPFYWIKWSFVGFVLFYAPITFAAAYGPGWLIAGTWQ
                     ITIVAGVLLSPLFYVKQDMPGGPQLIRQKIPLVSLGTSVIILIGAALIQLQHAESLSG
                     RMLLFSVLPVVIAAFAYPLGNRRMLEEYGGRLDTFQRVLGMTLASLPFWLILAAYGWW
                     SDGLPTASQTVQSFIVAVSSGIIATVLFFWATDMVRDNPQKLAAVEATQSGEVIFALL
                     GEIVLLSGVFPSLLSFAGLFIIIAGMMLHTFASQPRKPKKKAQSNLTA*"
                     /label="yjlA CDS"
     gene            complement(1217807..1218781)
                     /gene="yjlA"
                     /locus_tag="BSU_12260"
                     /old_locus_tag="BSU12260"
                     /label="yjlA gene"
     downshifts      complement(1217842)
                     /Source="Nicolas_upshifts"
                     /id="D683"
                     /incds=0
                     /nref=1
                     /ntot=95
                     /MaxReadThrough="1.84381"
                     /MaxDrop="2.54799"
                     /score="4.80318278"
                     /energy="-14.5"
                     /TU="NA"
                     /idTUdmin="U1004"
                     /TUdmin=0
                     /isTUend="TRUE"
                     /label="downshifts"
     promotor_-10    complement(1218802..1218821)
                     /Source="Nicolas_upshift_promotors"
                     /id="U1004"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.451548451548452"
                     /psig="0.997002997002997"
                     /xcortree=2386
                     /SigmaFactorBS="tccacatatagcggttcgccaaacatgatgtttttctcatga
                     ttcCATTGATCtgcatgataccgaaTAGTATAGTATAAAAAAATAatgccagaatgag
                     g"
                     /listShort="yjlA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(1218828)
                     /Source="Nicolas_upshifts"
                     /id="U1004"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.451548451548452"
                     /psig="0.997002997002997"
                     /xcortree=2386
                     /SigmaFactorBS="tccacatatagcggttcgccaaacatgatgtttttctcatga
                     ttcCATTGATCtgcatgataccgaaTAGTATAGTATAAAAAAATAatgccagaatgag
                     g"
                     /listShort="yjlA"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     S_feature       complement(1218830..1221336)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1297643_1300149_c"
                     /HighExp="Lbstat, S2, M0t90, nit, BT, M40t90, ferm, BC,
                     C30, Gly"
                     /AntisenseName="ndh"
                     /AntisenseCor="-0.74506751931257098"
                     /AntisenseRegPval="-48.1"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigH"
                     /TUshortPSig=1
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S449"
     promotor_-35    complement(1218836..1218843)
                     /Source="Nicolas_upshift_promotors"
                     /id="U1004"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.451548451548452"
                     /psig="0.997002997002997"
                     /xcortree=2386
                     /SigmaFactorBS="tccacatatagcggttcgccaaacatgatgtttttctcatga
                     ttcCATTGATCtgcatgataccgaaTAGTATAGTATAAAAAAATAatgccagaatgag
                     g"
                     /listShort="yjlA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-35    1218864..1218870
                     /Source="Nicolas_upshift_promotors"
                     /id="U1005"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp="0.998001998001998"
                     /psig="0.998001998001998"
                     /xcortree=269
                     /SigmaFactorBS="atcatgcagatcaatggaatcatgagaaaaacatcaTGTTTG
                     GcgaaccgctatatgTGGAAGACAAAAAAGGGAGgtgaaattgatggaaagagagaca
                     c"
                     /listShort="yjlB, S450, S451, rex, ndh"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    1218885..1218903
                     /Source="Nicolas_upshift_promotors"
                     /id="U1005"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp="0.998001998001998"
                     /psig="0.998001998001998"
                     /xcortree=269
                     /SigmaFactorBS="atcatgcagatcaatggaatcatgagaaaaacatcaTGTTTG
                     GcgaaccgctatatgTGGAAGACAAAAAAGGGAGgtgaaattgatggaaagagagaca
                     c"
                     /listShort="yjlB, S450, S451, rex, ndh"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        1218888
                     /Source="Nicolas_upshifts"
                     /id="U1005"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp="0.998001998001998"
                     /psig="0.998001998001998"
                     /xcortree=269
                     /SigmaFactorBS="atcatgcagatcaatggaatcatgagaaaaacatcaTGTTTG
                     GcgaaccgctatatgTGGAAGACAAAAAAGGGAGgtgaaattgatggaaagagagaca
                     c"
                     /listShort="yjlB, S450, S451, rex, ndh"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             1218913..1219410
                     /gene="yjlB"
                     /locus_tag="BSU_12270"
                     /old_locus_tag="BSU12270"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms; PubMedId: 10704478"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved hypothetical protein; cupin family"
                     /protein_id="NP_389109.1"
                     /db_xref="EnsemblGenomes-Gn:BSU12270"
                     /db_xref="EnsemblGenomes-Tr:CAB13084"
                     /db_xref="GOA:O34612"
                     /db_xref="InterPro:IPR006045"
                     /db_xref="InterPro:IPR011051"
                     /db_xref="InterPro:IPR014500"
                     /db_xref="InterPro:IPR014710"
                     /db_xref="SubtiList:BG13201"
                     /db_xref="UniProtKB/Swiss-Prot:O34612"
                     /translation="MERETQTYFFPDDGRIPNHPDFPLVVYQNALKDTGLAERIVTRH
                     GWSNSWSGSVFPYHHYHSNTHEVLIALRREAVIQFGGEKGAAIPFKSGDAVVIPAGVG
                     HKKLSSSPDFTVLGAYPGGVQYDMKTGKPNEREEAVKQIKQAALPANDPITGKREPLL
                     EIWVK*"
                     /label="yjlB CDS"
     gene            1218913..1219410
                     /gene="yjlB"
                     /locus_tag="BSU_12270"
                     /old_locus_tag="BSU12270"
                     /label="yjlB gene"
     S_feature       1219411..1219524
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1298224_1298337"
                     /HighExp="Etha, M9-stat, B60, Salt, Gly, LPhT, Heat, Sw,
                     HiTm, B36"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigB"
                     /TUshortPSig="0.998"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S450"
     promotor_-35    1219504..1219508
                     /Source="Nicolas_upshift_promotors"
                     /id="U1006"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.618381618381618"
                     /psig=1
                     /xcortree=2641
                     /SigmaFactorBS="agctccatataaattaatttcataatcgaagcaattcaCGTT
                     CaaattttgttcaaaaAGTGTTATCATATAGAAGGTaatcgaattggagttttttgtg
                     t"
                     /listShort="S451, rex, ndh"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    1219524..1219543
                     /Source="Nicolas_upshift_promotors"
                     /id="U1006"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.618381618381618"
                     /psig=1
                     /xcortree=2641
                     /SigmaFactorBS="agctccatataaattaatttcataatcgaagcaattcaCGTT
                     CaaattttgttcaaaaAGTGTTATCATATAGAAGGTaatcgaattggagttttttgtg
                     t"
                     /listShort="S451, rex, ndh"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     S_feature       1219526..1219798
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1298339_1298611"
                     /HighExp="LBGtran, dia5, Lbexp, LBGexp, dia0, HPh, aero,
                     LPh, BMM, MG 25"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA, SigB"
                     /TUshortPSig="1, 0.998"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S451"
     upshifts        1219526
                     /Source="Nicolas_upshifts"
                     /id="U1006"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.618381618381618"
                     /psig=1
                     /xcortree=2641
                     /SigmaFactorBS="agctccatataaattaatttcataatcgaagcaattcaCGTT
                     CaaattttgttcaaaaAGTGTTATCATATAGAAGGTaatcgaattggagttttttgtg
                     t"
                     /listShort="S451, rex, ndh"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             1219799..1220221
                     /gene="yjlC"
                     /locus_tag="BSU_12280"
                     /old_locus_tag="BSU12280"
                     /function="16.3: Control"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms; PubMedId: 16513748, 17015645, 22720735"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved hypothetical protein"
                     /protein_id="NP_389110.1"
                     /db_xref="EnsemblGenomes-Gn:BSU12280"
                     /db_xref="EnsemblGenomes-Tr:CAB13085"
                     /db_xref="InterPro:IPR012440"
                     /db_xref="SubtiList:BG13202"
                     /db_xref="UniProtKB/Swiss-Prot:O34633"
                     /translation="MPETIDQTNASVSQSQQDLIDQLLKPEVQESLTVLVDQLPKLTE
                     LVNILTKSYDFAQSVATDEVLKSDTVGAITEILEPVKETAKEVAATAIEAKDRAEASN
                     ETIGLFGLLRMLKDPQAQKLFRFANSYLEVMNERENQK*"
                     /label="yjlC CDS"
     gene            1219799..1220221
                     /gene="yjlC"
                     /locus_tag="BSU_12280"
                     /old_locus_tag="BSU12280"
                     /label="yjlC gene"
     CDS             1220261..1221439
                     /gene="ndh"
                     /locus_tag="BSU_12290"
                     /old_locus_tag="BSU12290"
                     /EC_number="1.6.99.-"
                     /function="16.10: Respire"
                     /experiment="publication(s) with functional evidences,
                     PMID:6816592, 16513748, 17015645, 22720735"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 6816592, 16513748,
                     17015645, 22720735; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH dehydrogenase"
                     /protein_id="NP_389111.1"
                     /db_xref="EnsemblGenomes-Gn:BSU12290"
                     /db_xref="EnsemblGenomes-Tr:CAB13086"
                     /db_xref="GOA:P80861"
                     /db_xref="InterPro:IPR023753"
                     /db_xref="InterPro:IPR036188"
                     /db_xref="SubtiList:BG13203"
                     /db_xref="UniProtKB/Swiss-Prot:P80861"
                     /translation="MSKHIVILGAGYGGVLSALTVRKHYTKEQARVTVVNKYPTHQII
                     TELHRLAAGNVSEKAVAMPLEKLFKGKDIDLKIAEVSSFSVDKKEVALADGSTLTYDA
                     LVVGLGSVTAYFGIPGLEENSMVLKSAADANKVFQHVEDRVREYSKTKNEADATILIG
                     GGGLTGVELVGELADIMPNLAKKYGVDHKEIKLKLVEAGPKILPVLPDDLIERATASL
                     EKRGVEFLTGLPVTNVEGNVIDLKDGSKVVANTFVWTGGVQGNPLVGESGLEVNRGRA
                     TVNDFLQSTSHEDVFVAGDSAVYFGPDGRPYPPTAQIAWQMGELIGYNLFAYLEGKTL
                     ETFKPVNSGTLASLGRKDAVAIIGANSTPLKGLPASLMKEASNVRYLTHIKGLFSLAY
                     *"
                     /label="ndh CDS"
     gene            1220261..1221439
                     /gene="ndh"
                     /locus_tag="BSU_12290"
                     /old_locus_tag="BSU12290"
                     /label="ndh gene"
     promotor_no_box 1221270..1221370
                     /Source="Nicolas_upshift_promotors"
                     /id="U1007"
                     /multdbtbs="-"
                     /comp="M21"
                     /sig="Sig-"
                     /pcomp="0.59040959040959"
                     /psig="0.015984015984016"
                     /xcortree=1732
                     /SigmaFactorBS="tcaagccagtaaactctggtacacttgcaagccttggacgca
                     aagacgcggttgccatcattggtgctaattctacaccgcttaaaggtcttcctgcttc
                     c"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_no_box"
     promotor_-10    complement(1221328..1221346)
                     /Source="Nicolas_upshift_promotors"
                     /id="U1008"
                     /multdbtbs="-"
                     /comp="M1"
                     /sig="SigH"
                     /pcomp=1
                     /psig=1
                     /xcortree=506
                     /SigmaFactorBS="cgtacattacttgcttctttcatcaaggaaGCAGGAAGAcct
                     ttaagcggTGTAGAATTAGCACCAATGatggcaaccgcgtctttgcgtccaaggcttg
                     c"
                     /listShort="S449, yjlA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        1221330
                     /Source="Nicolas_upshifts"
                     /id="U1007"
                     /multdbtbs="-"
                     /comp="M21"
                     /sig="Sig-"
                     /pcomp="0.59040959040959"
                     /psig="0.015984015984016"
                     /xcortree=1732
                     /SigmaFactorBS="tcaagccagtaaactctggtacacttgcaagccttggacgca
                     aagacgcggttgccatcattggtgctaattctacaccgcttaaaggtcttcctgcttc
                     c"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     upshifts        complement(1221336)
                     /Source="Nicolas_upshifts"
                     /id="U1008"
                     /multdbtbs="-"
                     /comp="M1"
                     /sig="SigH"
                     /pcomp=1
                     /psig=1
                     /xcortree=506
                     /SigmaFactorBS="cgtacattacttgcttctttcatcaaggaaGCAGGAAGAcct
                     ttaagcggTGTAGAATTAGCACCAATGatggcaaccgcgtctttgcgtccaaggcttg
                     c"
                     /listShort="S449, yjlA"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(1221358..1221366)
                     /Source="Nicolas_upshift_promotors"
                     /id="U1008"
                     /multdbtbs="-"
                     /comp="M1"
                     /sig="SigH"
                     /pcomp=1
                     /psig=1
                     /xcortree=506
                     /SigmaFactorBS="cgtacattacttgcttctttcatcaaggaaGCAGGAAGAcct
                     ttaagcggTGTAGAATTAGCACCAATGatggcaaccgcgtctttgcgtccaaggcttg
                     c"
                     /listShort="S449, yjlA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     downshifts      1221438
                     /Source="Nicolas_upshifts"
                     /id="D684"
                     /incds=0
                     /nref=220
                     /ntot=278
                     /MaxReadThrough="2.01042"
                     /MaxDrop="8.69373"
                     /score="30.6421047"
                     /energy="-23.1"
                     /TU="NA"
                     /idTUdmin="U1005"
                     /TUdmin="-2"
                     /isTUend="TRUE"
                     /label="downshifts"
     promotor_-35    1221547..1221554
                     /Source="Nicolas_upshift_promotors"
                     /id="U1009"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.694305694305694"
                     /psig="0.935064935064935"
                     /xcortree=1573
                     /SigmaFactorBS="ttttcaaaaaagaGATTGATCccaaaggaatataaAGGTAAA
                     ATAAAAACAAATCaaaatgttaacgttaacattttgaaatagaatgaaagacggtgag
                     g"
                     /listShort="uxaC"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    1221569..1221588
                     /Source="Nicolas_upshift_promotors"
                     /id="U1009"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.694305694305694"
                     /psig="0.935064935064935"
                     /xcortree=1573
                     /SigmaFactorBS="ttttcaaaaaagaGATTGATCccaaaggaatataaAGGTAAA
                     ATAAAAACAAATCaaaatgttaacgttaacattttgaaatagaatgaaagacggtgag
                     g"
                     /listShort="uxaC"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        1221594
                     /Source="Nicolas_upshifts"
                     /id="U1009"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.694305694305694"
                     /psig="0.935064935064935"
                     /xcortree=1573
                     /SigmaFactorBS="ttttcaaaaaagaGATTGATCccaaaggaatataaAGGTAAA
                     ATAAAAACAAATCaaaatgttaacgttaacattttgaaatagaatgaaagacggtgag
                     g"
                     /listShort="uxaC"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             1221637..1223058
                     /gene="uxaC"
                     /locus_tag="BSU_12300"
                     /old_locus_tag="BSU12300"
                     /EC_number="5.3.1.12"
                     /function="16.11: Scavenge (Catabolism)"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 2a: Function from experimental evidences
                     in other organisms; PubMedId: 9579062, 9882655; Product
                     type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="galacturonate isomerase"
                     /protein_id="NP_389112.1"
                     /db_xref="EnsemblGenomes-Gn:BSU12300"
                     /db_xref="EnsemblGenomes-Tr:CAB13087"
                     /db_xref="GOA:O34808"
                     /db_xref="InterPro:IPR003766"
                     /db_xref="InterPro:IPR032466"
                     /db_xref="SubtiList:BG13204"
                     /db_xref="UniProtKB/Swiss-Prot:O34808"
                     /translation="MEPFMGKNFLLKNETAVSLYHNYAKDMPIIDYHCHLSPKEIYEN
                     KTFQNITEAWLYGDHYKWRIMRANGIEETYITGDAPDEEKFMAWAKTVPMAIGNPLYN
                     WTHLELQRFFGIYEILNEKSGSAIWKQTNKLLKGEGFGARDLIVKSNVKVVCTTDDPV
                     DSLEYHLLLKEDKDFPVSVLPGFRPDKGLEINREGFPEWVQALEDAAAISITTYDEFL
                     KALEKRVRFFHSAGGRVSDHAIDTMVFAETTKEEAGRIFSDRLQGTEVSCEDEKKFKT
                     YTLQFLCGLYAELDWAMQFHINALRNTNTKMMKRLGPDTGYDSMNDEEIAKPLYKLLN
                     SVEMKNQLPKTILYSLNPNDNYVIASMINSFQDGITPGKIQFGTAWWFNDTKDGMLDQ
                     MKALSNVGLFSRFIGMLTDSRSFLSYTRHEYFRRIVCNLIGEWVENGEVPRDMELLGS
                     IVQGICYDNAKHYFQFQEEKANV*"
                     /label="uxaC CDS"
     gene            1221637..1223058
                     /gene="uxaC"
                     /locus_tag="BSU_12300"
                     /old_locus_tag="BSU12300"
                     /label="uxaC gene"
     CDS             1223126..1224505
                     /gene="exuM"
                     /locus_tag="BSU_12310"
                     /old_locus_tag="BSU12310"
                     /function="16.1: Circulate"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 9882655, 15849754,
                     16850406; Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="putative Na+:altronate/mannonate symporter"
                     /protein_id="NP_389113.1"
                     /db_xref="EnsemblGenomes-Gn:BSU12310"
                     /db_xref="EnsemblGenomes-Tr:CAB13088"
                     /db_xref="GOA:O34961"
                     /db_xref="InterPro:IPR001927"
                     /db_xref="InterPro:IPR018043"
                     /db_xref="InterPro:IPR020846"
                     /db_xref="InterPro:IPR036259"
                     /db_xref="SubtiList:BG13205"
                     /db_xref="UniProtKB/Swiss-Prot:O34961"
                     /translation="MRTELANKVVSVETEKRLSLKEKMSYGFGDFGNGFMFDLGQIYL
                     LKYFTDVAGIPAAMAGGIFLVSKLFAAITDPIVGSSIDYRKNIGKRGKFRPYLLIGSI
                     VLAVLTVLIFLSPNVSTTGKLIYAYASYMIWGIGYSFVNIPYGSLGAAMTQNSEDRTS
                     ISTFRQIGSLGALFITSVAVMPLLVKFDNPKVGYPVVMGLFAALGVFWFYICYRNCKE
                     RIIISEAPKEKLTLSSVVKTFITNKPLLTLVLMTIFSISAYNIKSAMLVYFAQYNLGN
                     VELMAYMNFIIIGSSFLGVVFLPKLVKMFGKKRTAMIGFGISVAADLINFMLPSNVYV
                     FTILASIAFIGISIPNGITWALVSDIIDYGEWKSGERKEATTYSLFNFSRKLAQSLSG
                     FLSGIGLGIIGYVPNAVQTAQALIGIKALLLLYPAIALALAMFIIGFLYKLTDQQHAQ
                     IVQDLHQKS*"
                     /label="exuM CDS"
     gene            1223126..1224505
                     /gene="exuM"
                     /locus_tag="BSU_12310"
                     /old_locus_tag="BSU12310"
                     /label="exuM gene"
     promotor_-10    complement(1223645..1223664)
                     /Source="Nicolas_upshift_promotors"
                     /id="U1010"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.988011988011988"
                     /psig="0.999000999001"
                     /xcortree=2077
                     /SigmaFactorBS="cgggtagccgaccttcggattatcaAACTTGACgagcagcgg
                     catcACGGCCACACTTGTGATAAAcaaggcgccaagtgatccgatttggcggaacgtc
                     g"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(1223650)
                     /Source="Nicolas_upshifts"
                     /id="U1010"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.988011988011988"
                     /psig="0.999000999001"
                     /xcortree=2077
                     /SigmaFactorBS="cgggtagccgaccttcggattatcaAACTTGACgagcagcgg
                     catcACGGCCACACTTGTGATAAAcaaggcgccaagtgatccgatttggcggaacgtc
                     g"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(1223678..1223685)
                     /Source="Nicolas_upshift_promotors"
                     /id="U1010"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.988011988011988"
                     /psig="0.999000999001"
                     /xcortree=2077
                     /SigmaFactorBS="cgggtagccgaccttcggattatcaAACTTGACgagcagcgg
                     catcACGGCCACACTTGTGATAAAcaaggcgccaagtgatccgatttggcggaacgtc
                     g"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     upshifts        1224530
                     /Source="Nicolas_upshifts"
                     /id="U1011"
                     /multdbtbs="SigE"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.926073926073926"
                     /psig="0.926073926073926"
                     /xcortree=1048
                     /SigmaFactorBS="gctcagatcgttcaggatcttcatcaaaagagctgacaatat
                     aatataaagaatatttaaaataatttgtAAATAAAAtgtgtttgtaggggtttcgctt
                     g"
                     /listShort="S452, yjmC, yjmD, uxuA, uxuB, exuT, exuR"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     misc_feature    1224540..1224547
                     /Source="Nicolas_upshift_promotors"
                     /id="U1011"
                     /multdbtbs="SigE"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.926073926073926"
                     /psig="0.926073926073926"
                     /xcortree=1048
                     /SigmaFactorBS="gctcagatcgttcaggatcttcatcaaaagagctgacaatat
                     aatataaagaatatttaaaataatttgtAAATAAAAtgtgtttgtaggggtttcgctt
                     g"
                     /listShort="S452, yjmC, yjmD, uxuA, uxuB, exuT, exuR"
                     /GFF_Attribute="listLong"
                     /label="promotor_single_box"
                     /note="Geneious type: promotor_single_box"
     S_feature       1224542..1224609
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1303355_1303422"
                     /HighExp="S4, S5, S6, S3, S8, S7, T5.0H, T4.0H, T3.30H,
                     M9-stat"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigEF"
                     /TUshortPSig="0.926"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S452"
     CDS             1224610..1225623
                     /gene="yjmC"
                     /locus_tag="BSU_12320"
                     /old_locus_tag="BSU12320"
                     /EC_number="1.1.1.-"
                     /function="16.11: Scavenge (Catabolism)"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 9579062, 9882655,
                     16788182; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative oxidoreductase"
                     /protein_id="NP_389114.1"
                     /db_xref="EnsemblGenomes-Gn:BSU12320"
                     /db_xref="EnsemblGenomes-Tr:CAB13089"
                     /db_xref="GOA:O34736"
                     /db_xref="InterPro:IPR003767"
                     /db_xref="InterPro:IPR036111"
                     /db_xref="SubtiList:BG13206"
                     /db_xref="UniProtKB/Swiss-Prot:O34736"
                     /translation="MKTITIAAEEAKELVWQKLDGAGLNERDAEKVADVLVHADLRNV
                     HSHGVLHTEHYVNRLLAGGINPGAQPVFKETGPVTGVLDGDDGFGHVNCDMAMDHAID
                     MAKKKGVGMVTAVNSSHCGALSYFVQKAADEKLIGMAMTHTDSIVVPFGGRTPILGTN
                     PIAYGVPAKHKKPFILDMATSKVAFGKILQAREEGKEIPEGWGVDENGEAVTDPDKVV
                     SLSTFGGPKGYGLSIVVDVFSGLLAGAAFGPHIAKMYNGLDQKRKLGHYVCAINPSFF
                     TDWDTFLEQMDAMIDELQQSPPAVGFERVYVPGEIEQLHEERNKKNGISIARSVYEFL
                     KSR*"
                     /label="yjmC CDS"
     gene            1224610..1225623
                     /gene="yjmC"
                     /locus_tag="BSU_12320"
                     /old_locus_tag="BSU12320"
                     /label="yjmC gene"
     CDS             1225629..1226648
                     /gene="yjmD"
                     /locus_tag="BSU_12330"
                     /old_locus_tag="BSU12330"
                     /EC_number="1.1.1.-"
                     /function="16.11: Scavenge (Catabolism)"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 9579062, 9882655;
                     Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative oxidoreductase"
                     /protein_id="NP_389115.1"
                     /db_xref="EnsemblGenomes-Gn:BSU12330"
                     /db_xref="EnsemblGenomes-Tr:CAB13090"
                     /db_xref="GOA:O35045"
                     /db_xref="InterPro:IPR002328"
                     /db_xref="InterPro:IPR011032"
                     /db_xref="InterPro:IPR013149"
                     /db_xref="InterPro:IPR013154"
                     /db_xref="InterPro:IPR020843"
                     /db_xref="InterPro:IPR036291"
                     /db_xref="SubtiList:BG13207"
                     /db_xref="UniProtKB/Swiss-Prot:O35045"
                     /translation="MKAVQVRKAYDLVTAEVKKPVLSKDDEVLVKVKRVGICGSDMHI
                     YHGTNPLATLPRVIGHEVTGQVEAVGANVQSLKPGDHVVIEPISYCGSCYACRKGRPN
                     VCAKLSVFGVHEDGGMREYIVLPERQLHAVSKDLPWEEAVMAEPYTIGAQAVWRGQVE
                     KGDTVLIQGAGPIGICVLKMAKLAGAAVMMTDLNNERLAFAKENGADAVVNVQAEHVA
                     ERVLEWTGNEGANVVIDAVCLPETFALSIEAVSPAGHVVVLGFDERAAQISQLPITKK
                     EVTITGSRLQTNQFPKVVELLNGGRLMHNGLVTHTFSVDDVHHAFQFIKEHPDQVRKA
                     VITFD*"
                     /label="yjmD CDS"
     gene            1225629..1226648
                     /gene="yjmD"
                     /locus_tag="BSU_12330"
                     /old_locus_tag="BSU12330"
                     /label="yjmD gene"
     CDS             1226673..1227752
                     /gene="uxuA"
                     /locus_tag="BSU_12340"
                     /old_locus_tag="BSU12340"
                     /EC_number="4.2.1.8"
                     /function="16.11: Scavenge (Catabolism)"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 1c: Function from experimental evidences
                     in the studied genus; PubMedId: 9579062, 9882655,
                     10368143, 25145794; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="D-mannonate dehydratase"
                     /protein_id="NP_389116.1"
                     /db_xref="EnsemblGenomes-Gn:BSU12340"
                     /db_xref="EnsemblGenomes-Tr:CAB13091"
                     /db_xref="GOA:O34346"
                     /db_xref="InterPro:IPR004628"
                     /db_xref="InterPro:IPR036237"
                     /db_xref="SubtiList:BG13208"
                     /db_xref="UniProtKB/Swiss-Prot:O34346"
                     /translation="MNMTFRWYGRGNDTVTLEYVKQIPGVKGIVWALHQKPVGDVWEK
                     EEIRAETEYIQSYGFHAEVVESVNVHEAIKLGNEERGRYIENYKQTIRNLAGFGVKVI
                     CYNFMPVFDWTRTDMFRPLEDGSTALFFEKAKVESLDPQELIRTVEEASDMTLPGWEP
                     EKLARIKELFAAYRTVDEEKLWDNLSFFLQEILPVAEAYGVQMAIHPDDPPWPIFGLP
                     RIITGEASYKKLRAISDSPSNCITLCTGSMGANPANDMVEIAKTYAGIAPFSHIRNVK
                     IYENGDFIETSHLTKDGSINIQGVMEELHKQDYEGYVRPDHGRHLWGEQCRPGYGLYD
                     RALGIMYLNGLWDAYEAMAKKEVGI*"
                     /label="uxuA CDS"
     gene            1226673..1227752
                     /gene="uxuA"
                     /locus_tag="BSU_12340"
                     /old_locus_tag="BSU12340"
                     /label="uxuA gene"
     CDS             1227749..1228585
                     /gene="uxuB"
                     /locus_tag="BSU_12350"
                     /old_locus_tag="BSU12350"
                     /EC_number="1.1.1.57"
                     /function="16.11: Scavenge (Catabolism)"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 2a: Function from experimental evidences
                     in other organisms; PubMedId: 9579062, 9882655, 10368143;
                     Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="fructuronate reductase"
                     /protein_id="NP_389117.1"
                     /db_xref="EnsemblGenomes-Gn:BSU12350"
                     /db_xref="EnsemblGenomes-Tr:CAB13092"
                     /db_xref="GOA:O34896"
                     /db_xref="InterPro:IPR002347"
                     /db_xref="InterPro:IPR020904"
                     /db_xref="InterPro:IPR036291"
                     /db_xref="SubtiList:BG13209"
                     /db_xref="UniProtKB/Swiss-Prot:O34896"
                     /translation="MIPLHENLAGKTAVITGGSGVLCSAMARELARHGMKVAILNRTA
                     EKGQAVVKEITAAGGTACAVAADVLDRMSLERAKEDILGQFGAVDLLINGAGGNHPDA
                     ITDVETYEEAGEGQSFFDMDERGFLTVFSTNFTGAFLASQVFGKELLKADSPAIINLS
                     SMSAYSPMTKVPAYSAAKASINNFTMWMAVHFAETGLRVNAIAPGFFLTKQNHDLLIN
                     QDGTFTSRSHKIIAGTPMKRFGKPEDLLGTLLWLADESYSGFVTGITVPVDGGFMAYS
                     GV*"
                     /label="uxuB CDS"
     gene            1227749..1228585
                     /gene="uxuB"
                     /locus_tag="BSU_12350"
                     /old_locus_tag="BSU12350"
                     /label="uxuB gene"
     CDS             1228633..1229901
                     /gene="exuT"
                     /locus_tag="BSU_12360"
                     /old_locus_tag="BSU12360"
                     /function="16.1: Circulate"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 2a: Function from experimental evidences
                     in other organisms; PubMedId: 8320243, 9579062, 9882655,
                     15849754, 16850406; Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="hexuronate transporter"
                     /protein_id="NP_389118.1"
                     /db_xref="EnsemblGenomes-Gn:BSU12360"
                     /db_xref="EnsemblGenomes-Tr:CAB13093"
                     /db_xref="GOA:O34456"
                     /db_xref="InterPro:IPR000849"
                     /db_xref="InterPro:IPR004744"
                     /db_xref="InterPro:IPR011701"
                     /db_xref="InterPro:IPR020846"
                     /db_xref="InterPro:IPR036259"
                     /db_xref="SubtiList:BG13210"
                     /db_xref="UniProtKB/Swiss-Prot:O34456"
                     /translation="MFSKDKLPVILFLFLAGVINYLDRSALSIAAPFIQDDLTLSATQ
                     MGLIFSSFSIGYAIFNFLGGVASDRYGAKLTLFVAMVVWSLFSGAVALAFGFVSLLII
                     RILFGMGEGPLSATINKMVNNWFPPTQRASVIGVTNSGTPLGGAISGPIVGMIAVAFS
                     WKVSFVLIMIIGLIWAVLWFKFVKEKPQETIKEAPAIKAETSPGEKIPLTFYLKQKTV
                     LFTAFAFFAYNYILFFFLTWFPSYLVDERGLSVESMSVITVIPWILGFIGLAAGGFVS
                     DYVYKKTARKGVLFSRKVVLVTCLFSSAVLIGFAGLVATTAGAVTLVALSVFFLYLTG
                     AIYWAVIQDVVDQNNVGSVGGFMHFLANTAGIIGPALTGFIVDQTGTFSGAFLLAGGL
                     AVFASLAVIRFVRPIIGKPAGTEAENPVSY*"
                     /label="exuT CDS"
     gene            1228633..1229901
                     /gene="exuT"
                     /locus_tag="BSU_12360"
                     /old_locus_tag="BSU12360"
                     /label="exuT gene"
     promotor_-35    1229845..1229848
                     /Source="Nicolas_upshift_promotors"
                     /id="U1012"
                     /multdbtbs="-"
                     /comp="M13"
                     /sig="Sig-"
                     /pcomp="0.637362637362637"
                     /psig="0.005994005994006"
                     /xcortree=1486
                     /SigmaFactorBS="ctggctgtcttcgcttcacttgctgtgattcgttttgtcCGT
                     CcaatcattggtaagcCAGCGggaacagaagctgagaatcctgtgtcttattaatctg
                     g"
                     /listShort="exuR"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    1229864..1229868
                     /Source="Nicolas_upshift_promotors"
                     /id="U1012"
                     /multdbtbs="-"
                     /comp="M13"
                     /sig="Sig-"
                     /pcomp="0.637362637362637"
                     /psig="0.005994005994006"
                     /xcortree=1486
                     /SigmaFactorBS="ctggctgtcttcgcttcacttgctgtgattcgttttgtcCGT
                     CcaatcattggtaagcCAGCGggaacagaagctgagaatcctgtgtcttattaatctg
                     g"
                     /listShort="exuR"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        1229866
                     /Source="Nicolas_upshifts"
                     /id="U1012"
                     /multdbtbs="-"
                     /comp="M13"
                     /sig="Sig-"
                     /pcomp="0.637362637362637"
                     /psig="0.005994005994006"
                     /xcortree=1486
                     /SigmaFactorBS="ctggctgtcttcgcttcacttgctgtgattcgttttgtcCGT
                     CcaatcattggtaagcCAGCGggaacagaagctgagaatcctgtgtcttattaatctg
                     g"
                     /listShort="exuR"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     misc_feature    1229934..1229953
                     /Source="Nicolas_upshift_promotors"
                     /id="U1013"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.966033966033966"
                     /psig=1
                     /xcortree=3107
                     /SigmaFactorBS="agaagctgagaatcctgtgtcttattaatctggaaatatagt
                     gggagaggcggtatgtttGATGATACAATATACAGTAAataatcgcagccggtatgat
                     a"
                     /listShort="exuR"
                     /GFF_Attribute="listLong"
                     /label="promotor_single_box"
                     /note="Geneious type: promotor_single_box"
     upshifts        1229934
                     /Source="Nicolas_upshifts"
                     /id="U1013"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.966033966033966"
                     /psig=1
                     /xcortree=3107
                     /SigmaFactorBS="agaagctgagaatcctgtgtcttattaatctggaaatatagt
                     gggagaggcggtatgtttGATGATACAATATACAGTAAataatcgcagccggtatgat
                     a"
                     /listShort="exuR"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             1229989..1230990
                     /gene="exuR"
                     /locus_tag="BSU_12370"
                     /old_locus_tag="BSU12370"
                     /function="16.3: Control"
                     /experiment="publication(s) with functional evidences,
                     PMID:9579062, 9882655"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 9579062, 9882655; Product
                     type r: regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator (LacI family)"
                     /protein_id="NP_389119.1"
                     /db_xref="EnsemblGenomes-Gn:BSU12370"
                     /db_xref="EnsemblGenomes-Tr:CAB13094"
                     /db_xref="GOA:Q9JMQ1"
                     /db_xref="InterPro:IPR000843"
                     /db_xref="InterPro:IPR010982"
                     /db_xref="InterPro:IPR028082"
                     /db_xref="SubtiList:BG13211"
                     /db_xref="UniProtKB/Swiss-Prot:Q9JMQ1"
                     /translation="MVTIKDIAKLANVSHTTVSRALNNSPYIKEHTKKKILELAEQLN
                     YTPNVNAKSLAMQKSHTIGLFFTSITNGTSHSFFADTIKGVNQAISEDYNLYVRGIDD
                     LKNYDSVTPMRYDGIILMSQSDIDNSFIYHIREKNIPLVVLNRDIDDRTITNILSNDK
                     EGSQEAVEYFIQSGHQDIAIIEGIEGFKSSQQRKEGYLSALIQHHIPIKHEYSVKGQY
                     DMESGFQAMERLLALPNPPTAVFCSNDDMAIGAMNAIFAKGLRVPDDISVIGFDDIGF
                     SQYITPRLSTVKRPVEKISVLGAQKLLSLISEPETKAEKILENTEFMVRDSVRRLTT*
                     "
                     /label="exuR CDS"
     gene            1229989..1230990
                     /gene="exuR"
                     /locus_tag="BSU_12370"
                     /old_locus_tag="BSU12370"
                     /label="exuR gene"
     promotor_no_box complement(1230672..1230772)
                     /Source="Nicolas_upshift_promotors"
                     /id="U1014"
                     /multdbtbs="-"
                     /comp="M13"
                     /sig="Sig-"
                     /pcomp="0.915084915084915"
                     /psig="0.024975024975025"
                     /xcortree=19
                     /SigmaFactorBS="cgcgcaggccctttgcgaatatcgcattcatcgctccgattg
                     ccatgtcatcattcgaacaaaaaacagcggttggaggattcggcagtgccagcagccg
                     c"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_no_box"
     upshifts        complement(1230712)
                     /Source="Nicolas_upshifts"
                     /id="U1014"
                     /multdbtbs="-"
                     /comp="M13"
                     /sig="Sig-"
                     /pcomp="0.915084915084915"
                     /psig="0.024975024975025"
                     /xcortree=19
                     /SigmaFactorBS="cgcgcaggccctttgcgaatatcgcattcatcgctccgattg
                     ccatgtcatcattcgaacaaaaaacagcggttggaggattcggcagtgccagcagccg
                     c"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     downshifts      1230966
                     /Source="Nicolas_upshifts"
                     /id="D685"
                     /incds=0
                     /nref=2
                     /ntot=132
                     /MaxReadThrough="2.47166"
                     /MaxDrop="3.11543"
                     /score="12.2153519"
                     /energy="-7.4"
                     /TU="NA"
                     /idTUdmin="U1011"
                     /TUdmin=0
                     /isTUend="TRUE"
                     /label="downshifts"
     CDS             1231067..1232509
                     /gene="uxaB"
                     /locus_tag="BSU_12380"
                     /old_locus_tag="BSU12380"
                     /EC_number="1.1.1.58"
                     /function="16.11: Scavenge (Catabolism)"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 2a: Function from experimental evidences
                     in other organisms; PubMedId: 9579062, 9882655; Product
                     type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="tagaturonate reductase (altronate
                     oxidoreductase)"
                     /protein_id="NP_389120.1"
                     /db_xref="EnsemblGenomes-Gn:BSU12380"
                     /db_xref="EnsemblGenomes-Tr:CAB13095"
                     /db_xref="GOA:O34354"
                     /db_xref="InterPro:IPR000669"
                     /db_xref="InterPro:IPR008927"
                     /db_xref="InterPro:IPR013118"
                     /db_xref="InterPro:IPR013131"
                     /db_xref="InterPro:IPR013328"
                     /db_xref="InterPro:IPR023668"
                     /db_xref="InterPro:IPR036291"
                     /db_xref="SubtiList:BG13212"
                     /db_xref="UniProtKB/Swiss-Prot:O34354"
                     /translation="MQKLNKNVYDHYTQYPEKILQFGEGNFLRGFIDWQIDQLNQHTD
                     FNGSVAVVQPRGSEKIKRLNEQDGLYTLFLQGMKDGEAVNEHMIINSISRGIDLFSDY
                     EAYKELASSERLRFIISNTTEAGIVCDEKDRLEDRPQKTFPGKLTAFLYFRYQAFKGD
                     QTKGCVLIPCELIENNGEKLRETVLHYAHLWKLEEGFTQWIHEANTFCNSLVDRIVPG
                     FPVDSIDEITADLGYQDDLIVVGEQYYLWVIEGPDWIGKELPFAAAGLHTKIVSDLTP
                     YRTKKVRILNGAHTAMTPVALLYGLKTVRDAVEHPEVGRFIRELIDDEILPVLKMEGL
                     SQYADDVLNRFKNPYIKHYLESIALNAISKFKTRNLPTLKEYAEQKGQLPERLVFSFS
                     ALLYFYHDNETLQDDPAVLQFFKEVWCQEDGDMLRIASRVLGEQRLWGADLNEIPKLT
                     DRVAVYLNHIHELGMQRALEQYCIQGGEVR*"
                     /label="uxaB CDS"
     gene            1231067..1232509
                     /gene="uxaB"
                     /locus_tag="BSU_12380"
                     /old_locus_tag="BSU12380"
                     /label="uxaB gene"
     CDS             1232506..1233999
                     /gene="uxaA"
                     /locus_tag="BSU_12390"
                     /old_locus_tag="BSU12390"
                     /EC_number="4.2.1.7"
                     /function="16.11: Scavenge (Catabolism)"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 2a: Function from experimental evidences
                     in other organisms; PubMedId: 9579062, 9882655; Product
                     type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="altronate dehydratase"
                     /protein_id="NP_389121.2"
                     /db_xref="EnsemblGenomes-Gn:BSU12390"
                     /db_xref="EnsemblGenomes-Tr:CAB13096"
                     /db_xref="GOA:O34673"
                     /db_xref="InterPro:IPR007392"
                     /db_xref="InterPro:IPR013974"
                     /db_xref="SubtiList:BG13213"
                     /db_xref="UniProtKB/Swiss-Prot:O34673"
                     /translation="MKSFIKIHKQDNVLLALRDIQKGERLHAYGVSIEVKDDIKRGHK
                     IALQSIKENDSIVKYGFPIGHASQDISIGEHIHVHNTKTNLSDIQLYSYTPRFDENPY
                     SNENRTFKGFRRENGDAGVRNELWIVPTVGCVNGIAEKMLQRFVRETGDIAPFDNVLV
                     LKHQYGCSQLGDDHENTKQILLNAIRHPNAGGVLVLGLGCENNELARMKEALQDVNLK
                     RVKFLESQSVTDEMEAGVALLKEIHEAAKGDKREDIPLSELKIGLKCGGSDGFSGITA
                     NPLLGRFSDYLIAQGGSTVLTEVPEMFGAETILMQRAANEEVFHKIVDLINDFKQYFI
                     KHDQPVYENPSPGNKAGGISTLEDKSLGCTQKAGISPVTDVLKYGEVLKTKGLTLLSA
                     PGNDLIASSALAAAGCQIVLFTTGRGTPFGTFVPTVKVATNTELYEAKPHWIDFNAGL
                     LAEDDVHEEYVLREFIHYMIEVASGQLVNHEKNDFKELAIFKSGVTL*"
                     /label="uxaA CDS"
     gene            1232506..1233999
                     /gene="uxaA"
                     /locus_tag="BSU_12390"
                     /old_locus_tag="BSU12390"
                     /label="uxaA gene"
     CDS             complement(1234038..1234802)
                     /gene="yjnA"
                     /locus_tag="Delta6_BSU_12400_SNPvariant"
                     /old_locus_tag="BSU_12400"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 15849754, 16850406,
                     16885442; Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="putative permease"
                     /protein_id="NP_389122.1"
                     /db_xref="EnsemblGenomes-Gn:BSU12400"
                     /db_xref="EnsemblGenomes-Tr:CAB13097"
                     /db_xref="GOA:O34578"
                     /db_xref="InterPro:IPR002781"
                     /db_xref="SubtiList:BG13214"
                     /db_xref="UniProtKB/Swiss-Prot:O34578"
                     /modified_by="User"
                     /translation="MSVSIILMGLFVGALVGLTGVGGAALLTPLLIVLGINPSIAVGT
                     DLVYNSITKLFGVASHWRQKTINFKLVKYLAIGGIPSASLAIGILHLFPAFHQHQEEI
                     IKHALGYVLTLVAISIIVRLFLDRKLRPNRWQLMPLENKRALTILIGVVFGFIVGLTS
                     IGSGSLFAIAMIYLFNMKASQIVGTDIAHAFLLVTAAGILNASFGSVDYMLAANLLLG
                     SIPGVLIGSHLSPRFSPRPLQFIMASIILVSGLKLI*"
                     /label="Delta6_BSU_12400_SNPvariant"
     gene            complement(1234038..1234802)
                     /gene="yjnA"
                     /locus_tag="Delta6_BSU_12400_SNPvariant"
                     /old_locus_tag="BSU_12400"
                     /modified_by="User"
                     /label="Delta6_BSU_12400_SNPvariant"
     downshifts      complement(1234057)
                     /Source="Nicolas_upshifts"
                     /id="D686"
                     /incds=0
                     /nref=96
                     /ntot=170
                     /MaxReadThrough="1.34004"
                     /MaxDrop="4.60564"
                     /score="6.47747687"
                     /energy="-11.3"
                     /TU="NA"
                     /idTUdmin="U1015"
                     /TUdmin="-1"
                     /isTUend="TRUE"
                     /label="downshifts"
     Polymorphism    join(1234570,1234572)
                     /Source="geneious"
                     /ID="SNP_BsDelta6_1313384_1313384"
                     /Polymorphism_Type="SNP (transition)"
                     /note="SNP between marked nucleotides"
                     /strain="Bacillus subtilis Delta6"
                     /Length=1
                     /Amino_Acid_Change="S -> G"
                     /CDS_Position=232
                     /Change="T -> C"
                     /Codon_Change="AGT -> GGT"
                     /Coverage=150
                     /locus_tag="BSU_12400"
                     /Protein_Effect="Substitution"
                     /Reference_Frequency
                     /Reference_Nucleotides="T"
                     /Variant_Nucleotides="C"
                     /Variant_P_Value=0
                     /Variant_Raw_Frequency=149
                     /comment="Delta6_BSU_12400_SNPvariant"
                     /modified_by="User"
                     /
                     /label="Polymorphism_Delta6"
     SCAR            join(1234829,1234836)
                     /created_by="User"
                     /modified_by="User"
                     /label="TF8A"
     N_region        1234830..1234835
                     /created_by="User"
                     /note_="EcoRI site (GAATTC)"
                     /modified_by="User"
                     /label="TF8A"
     CDS             <1234838..1235158
                     /gene="xlyA"
                     /locus_tag="Delta6_pseudo_BSU_12810"
                     /old_locus_tag="BSU12810"
                     /EC_number="3.5.1.28"
                     /function="16.5: Explore"
                     /experiment="publication(s) with functional evidences,
                     PMID:7921239, 9555893"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 7921239, 9555893; Product
                     type h: extrachromosomal origin"
                     /codon_start=1
                     /transl_table=11
                     /product="phage PBSX; N-acetylmuramoyl-L-alanine amidase"
                     /protein_id="NP_389164.1"
                     /db_xref="EnsemblGenomes-Gn:BSU12810"
                     /db_xref="EnsemblGenomes-Tr:CAB13138"
                     /db_xref="GOA:P39800"
                     /db_xref="InterPro:IPR002477"
                     /db_xref="InterPro:IPR002502"
                     /db_xref="InterPro:IPR018392"
                     /db_xref="InterPro:IPR036365"
                     /db_xref="InterPro:IPR036366"
                     /db_xref="InterPro:IPR036505"
                     /db_xref="InterPro:IPR036779"
                     /db_xref="PDB:3HMB"
                     /db_xref="PDB:3RDR"
                     /db_xref="SubtiList:BG10962"
                     /db_xref="UniProtKB/Swiss-Prot:P39800"
                     /NCBI_locus_tag="A8O17_RS06625"
                     /modified_by="User"
                     /translation="PNLIRVGQVLIVSAPSAAEKPELYPLPDGIIQLTTPYTSGEHVF
                     QVQRALAALYFYPDKGAVNNGIDGVYGPKTADAVARFQSVNGLTADGIYGPATKEKIA
                     AQLS*"
                     /label="Delta6_pseudo_BSU_12810"
     gene            <1234838..1235158
                     /gene="xlyA"
                     /locus_tag="Delta6_pseudo_BSU_12810"
                     /old_locus_tag="BSU12810"
                     /NCBI_locus_tag="A8O17_RS06625"
                     /modified_by="User"
                     /label="Delta6_pseudo_BSU_12810"
     downshifts      1235167
                     /Source="Nicolas_upshifts"
                     /id="D696"
                     /incds=0
                     /nref=29
                     /ntot=162
                     /MaxReadThrough="3.77255"
                     /MaxDrop="5.00305"
                     /score="30.9009227"
                     /energy="-12.5"
                     /TU="U1029,U1033"
                     /idTUdmin="U1029"
                     /TUdmin="-152"
                     /isTUend="FALSE"
                     /label="downshifts"
     S_feature       complement(1235176..1235379)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1348200_1348403_c"
                     /HighExp="S8, S6, S7, BT, B36, S5, S4, G/S, Pyr, B60"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA, SigEF"
                     /TUshortPSig="1, 0.798"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S458"
     CDS             complement(1235195..1235332)
                     /gene="spoIISC"
                     /locus_tag="BSU_12815"
                     /old_locus_tag="BSU12815"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 1c: Function from experimental evidences
                     in the studied genus; PubMedId: 11371520, 18096016,
                     20863891, 21147767, 25039482, 26300872, 27294956; Product
                     type r: regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="three component toxin / antitoxin / antitoxin
                     SpoIISABC, antitoxin C"
                     /protein_id="YP_009513952.1"
                     /translation="MSGDTVKKLVRRVKFVDYGRFGLSGYSLRVRERSAGIIKKLKKK
                     K*"
                     /label="spoIISC CDS"
     gene            complement(1235195..1235332)
                     /gene="spoIISC"
                     /locus_tag="BSU_12815"
                     /old_locus_tag="BSU12815"
                     /label="spoIISC gene"
     downshifts      complement(1235219)
                     /Source="Nicolas_upshifts"
                     /id="D697"
                     /incds=0
                     /nref=31
                     /ntot=215
                     /MaxReadThrough="2.75573"
                     /MaxDrop="4.3776"
                     /score="24.0186344"
                     /energy="-12.5"
                     /TU="U1034"
                     /idTUdmin="U1035"
                     /TUdmin=0
                     /isTUend="TRUE"
                     /label="downshifts"
     CDS             complement(1235418..1235588)
                     /gene="spoIISB"
                     /locus_tag="BSU_12820"
                     /old_locus_tag="BSU12820"
                     /function="16.3: Control"
                     /experiment="publication(s) with functional evidences,
                     PMID:11371520, 18096016, 20863891, 21147767, 25039482,
                     26300872, 27294956"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 11371520, 18096016,
                     20863891, 21147767, 25039482, 26300872, 27294956; Product
                     type f: factor"
                     /codon_start=1
                     /transl_table=11
                     /product="three-component apoptotic control system
                     component B (antitoxin B)"
                     /protein_id="NP_389165.1"
                     /db_xref="EnsemblGenomes-Gn:BSU12820"
                     /db_xref="EnsemblGenomes-Tr:CAB13139"
                     /db_xref="GOA:O34800"
                     /db_xref="InterPro:IPR025897"
                     /db_xref="PDB:3O6Q"
                     /db_xref="SubtiList:BG12678"
                     /db_xref="UniProtKB/Swiss-Prot:O34800"
                     /translation="MERAFQNRCEPRAAKPFKILKKRSTTSVASYQVSPHTARIFKEN
                     ERLIDEYKRKKA*"
                     /label="spoIISB CDS"
     gene            complement(1235418..1235588)
                     /gene="spoIISB"
                     /locus_tag="BSU_12820"
                     /old_locus_tag="BSU12820"
                     /label="spoIISB gene"
     downshifts      complement(1235424)
                     /Source="Nicolas_upshifts"
                     /id="D698"
                     /incds=0
                     /nref=6
                     /ntot=86
                     /MaxReadThrough="4.69899"
                     /MaxDrop="3.0872"
                     /score="24.0186344"
                     /energy="-12.5"
                     /TU="U1034,U1035"
                     /idTUdmin="U1035"
                     /TUdmin="-205"
                     /isTUend="FALSE"
                     /label="downshifts"
     CDS             complement(1235588..1236334)
                     /gene="spoIISA"
                     /locus_tag="BSU_12830"
                     /old_locus_tag="BSU12830"
                     /function="16.3: Control"
                     /experiment="publication(s) with functional evidences,
                     PMID:11371520, 18096016, 20863891, 21147767, 25039482,
                     26300872, 27294956"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 11371520, 18096016,
                     20863891, 21147767, 25039482, 26300872, 27294956; Product
                     type f: factor"
                     /codon_start=1
                     /transl_table=11
                     /product="three-component apoptosis factor (ABC
                     toxin/antitoxin/antitoxin system)"
                     /protein_id="NP_389166.1"
                     /db_xref="EnsemblGenomes-Gn:BSU12830"
                     /db_xref="EnsemblGenomes-Tr:CAB13140"
                     /db_xref="GOA:O34853"
                     /db_xref="InterPro:IPR025940"
                     /db_xref="PDB:3O6Q"
                     /db_xref="SubtiList:BG12677"
                     /db_xref="UniProtKB/Swiss-Prot:O34853"
                     /translation="MVLFFQIMVWCIVAGLGLYVYATWRFEAKVKEKMSAIRKTWYLL
                     FVLGAMVYWTYEPTSLFTHWERYLIVAVSFALIDAFIFLSAYVKKLAGSELETDTREI
                     LEENNEMLHMYLNRLKTYQYLLKNEPIHVYYGSIDAYAEGIDKLLKTYADKMNLTASL
                     CHYSTQADKDRLTEHMDDPADVQTRLDRKDVYYDQYGKVVLIPFTIETQNYVIKLTSD
                     SIVTEFDYLLFTSLTSIYDLVLPIEEEGEG*"
                     /label="spoIISA CDS"
     gene            complement(1235588..1236334)
                     /gene="spoIISA"
                     /locus_tag="BSU_12830"
                     /old_locus_tag="BSU12830"
                     /label="spoIISA gene"
     promotor_-10    complement(1236169..1236188)
                     /Source="Nicolas_upshift_promotors"
                     /id="U1034"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.724275724275724"
                     /psig=1
                     /xcortree=623
                     /SigmaFactorBS="tcaaagaaaaaatgtccgccattcggaaaacttggTATTTGC
                     TgtttgttctgggcgcTATGGTATACTGGACATATGagcccacttccctatttaccca
                     c"
                     /listShort="spoIISB, S458"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(1236186)
                     /Source="Nicolas_upshifts"
                     /id="U1034"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.724275724275724"
                     /psig=1
                     /xcortree=623
                     /SigmaFactorBS="tcaaagaaaaaatgtccgccattcggaaaacttggTATTTGC
                     TgtttgttctgggcgcTATGGTATACTGGACATATGagcccacttccctatttaccca
                     c"
                     /listShort="spoIISB, S458"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(1236204..1236211)
                     /Source="Nicolas_upshift_promotors"
                     /id="U1034"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.724275724275724"
                     /psig=1
                     /xcortree=623
                     /SigmaFactorBS="tcaaagaaaaaatgtccgccattcggaaaacttggTATTTGC
                     TgtttgttctgggcgcTATGGTATACTGGACATATGagcccacttccctatttaccca
                     c"
                     /listShort="spoIISB, S458"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    complement(1236360..1236378)
                     /Source="Nicolas_upshift_promotors"
                     /id="U1035"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.798201798201798"
                     /psig="0.798201798201798"
                     /xcortree=1112
                     /SigmaFactorBS="cttctgtcaaaggagcggtttttttgatggaacaGGAAAAcc
                     atccggatctctcGAATACAATAAGCAGAACCtatttcagatgtgagggattcgaata
                     t"
                     /listShort="spoIISA, spoIISB, S458"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(1236373)
                     /Source="Nicolas_upshifts"
                     /id="U1035"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.798201798201798"
                     /psig="0.798201798201798"
                     /xcortree=1112
                     /SigmaFactorBS="cttctgtcaaaggagcggtttttttgatggaacaGGAAAAcc
                     atccggatctctcGAATACAATAAGCAGAACCtatttcagatgtgagggattcgaata
                     t"
                     /listShort="spoIISA, spoIISB, S458"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(1236394..1236399)
                     /Source="Nicolas_upshift_promotors"
                     /id="U1035"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.798201798201798"
                     /psig="0.798201798201798"
                     /xcortree=1112
                     /SigmaFactorBS="cttctgtcaaaggagcggtttttttgatggaacaGGAAAAcc
                     atccggatctctcGAATACAATAAGCAGAACCtatttcagatgtgagggattcgaata
                     t"
                     /listShort="spoIISA, spoIISB, S458"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             complement(1236444..1237445)
                     /gene="pitB"
                     /locus_tag="BSU_12840"
                     /old_locus_tag="BSU12840"
                     /function="16.1: Circulate"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 2b: Function from indirect experimental
                     evidences (e.g. phenotypes); PubMedId: 10784039, 15849754,
                     16850406; Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="putative low-affinity inorganic phosphate
                     transporter"
                     /protein_id="NP_389167.2"
                     /db_xref="EnsemblGenomes-Gn:BSU12840"
                     /db_xref="EnsemblGenomes-Tr:CAB13141"
                     /db_xref="GOA:O34436"
                     /db_xref="InterPro:IPR001204"
                     /db_xref="SubtiList:BG13226"
                     /db_xref="UniProtKB/Swiss-Prot:O34436"
                     /translation="MDILLILTILIVICALAFDFINGFHDTANAIATSVSTKALKPRH
                     AIILAAVMNFVGAMTFTGVAKTITKDIVDPYTLENGSVVILAALLAAIAWNLITWYYG
                     IPSSSSHAIIGAIAGAAIAAAGFAALNYKGFIKIIEALILSPIIAFVLGFILYSIVKL
                     IFKDSNLAKTNKQFRRVQIVTAALQSYTHGTNDAQKAMGIITMALITANLHTSANDIP
                     TWVQFACATAMGLGTSIGGWKIIKTVGGKIMKIRPVNGVSADLTGAAIIFGATFIHLP
                     VSTTHVISSSILGVGASHRVKGVNWGTAKRMLITWVITLPISATLGAIAYFILNMIF*
                     "
                     /label="pitB CDS"
     gene            complement(1236444..1237445)
                     /gene="pitB"
                     /locus_tag="BSU_12840"
                     /old_locus_tag="BSU12840"
                     /label="pitB gene"
     downshifts      complement(1236473)
                     /Source="Nicolas_upshifts"
                     /id="D699"
                     /incds=0
                     /nref=205
                     /ntot=253
                     /MaxReadThrough="3.49591"
                     /MaxDrop="5.81942"
                     /score="21.8061263"
                     /energy="-11"
                     /TU="U1036,U1038"
                     /idTUdmin="U1037"
                     /TUdmin=0
                     /isTUend="TRUE"
                     /label="downshifts"
     CDS             complement(1237458..1238075)
                     /gene="ykaA"
                     /locus_tag="BSU_12850"
                     /old_locus_tag="BSU12850"
                     /function="16.1: Circulate"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 9696772, 14563871;
                     Product type r: regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="putative PitB transporter accessory protein"
                     /protein_id="NP_389168.1"
                     /db_xref="EnsemblGenomes-Gn:BSU12850"
                     /db_xref="EnsemblGenomes-Tr:CAB13142"
                     /db_xref="InterPro:IPR018445"
                     /db_xref="SubtiList:BG13225"
                     /db_xref="UniProtKB/Swiss-Prot:O34454"
                     /translation="MIRRKKDKFSLLLTEIAKNIDETAEYFVNFKVTNQTTLKEFADT
                     LKEYETKGDNHVHVMIKELNKAFITPIEREDILQLTNSLDDVLDGIEHFSAMMEIFSI
                     TSSDEHIDKFSGYIRECAKEILITIELLAENRLKDIQPHAIKIKEYEHSCDNLHRKSL
                     KNLFGNETDPIKVIQYREIYETLEEIADSCQSVANNLETIIMKNA*"
                     /label="ykaA CDS"
     gene            complement(1237458..1238075)
                     /gene="ykaA"
                     /locus_tag="BSU_12850"
                     /old_locus_tag="BSU12850"
                     /label="ykaA gene"
     promotor_-10    complement(1238111..1238130)
                     /Source="Nicolas_upshift_promotors"
                     /id="U1036"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.933066933066933"
                     /psig="0.996003996003996"
                     /xcortree=2607
                     /SigmaFactorBS="aagatacgtttttttcgactttaCCTGTtttttttcgacaaa
                     aGGCTATATAATAATTTGATGtgtgcattgttcattcaaactatggagggtttttaat
                     g"
                     /listShort="ykaA, pit"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(1238113)
                     /Source="Nicolas_upshifts"
                     /id="U1036"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.933066933066933"
                     /psig="0.996003996003996"
                     /xcortree=2607
                     /SigmaFactorBS="aagatacgtttttttcgactttaCCTGTtttttttcgacaaa
                     aGGCTATATAATAATTTGATGtgtgcattgttcattcaaactatggagggtttttaat
                     g"
                     /listShort="ykaA, pit"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     S_feature       complement(1238115..1238212)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1351139_1351236_c"
                     /HighExp="H2O2, Etha, dia15, Diami, Paraq, Heat, dia5,
                     Salt, LBGstat, Oxctl"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA, SigA"
                     /TUshortPSig="0.972, 0.987"
                     /TUlongSig="SigA"
                     /TUlongPSig="0.992"
                     /label="S459"
     promotor_-35    complement(1238146..1238150)
                     /Source="Nicolas_upshift_promotors"
                     /id="U1036"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.933066933066933"
                     /psig="0.996003996003996"
                     /xcortree=2607
                     /SigmaFactorBS="aagatacgtttttttcgactttaCCTGTtttttttcgacaaa
                     aGGCTATATAATAATTTGATGtgtgcattgttcattcaaactatggagggtttttaat
                     g"
                     /listShort="ykaA, pit"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    complement(1238192..1238211)
                     /Source="Nicolas_upshift_promotors"
                     /id="U1037"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.962037962037962"
                     /psig="0.972027972027972"
                     /xcortree=641
                     /SigmaFactorBS="atatactttttacgttaagcagaaagtttttgcaaacttGGG
                     TCGTTtttttaaagcgaagTAGGTCAAAATAAGGAGACAcgatttatcaaaaaagtca
                     a"
                     /listShort="S459, ykaA, pit"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(1238212)
                     /Source="Nicolas_upshifts"
                     /id="U1037"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.962037962037962"
                     /psig="0.972027972027972"
                     /xcortree=641
                     /SigmaFactorBS="atatactttttacgttaagcagaaagtttttgcaaacttGGG
                     TCGTTtttttaaagcgaagTAGGTCAAAATAAGGAGACAcgatttatcaaaaaagtca
                     a"
                     /listShort="S459, ykaA, pit"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(1238226..1238233)
                     /Source="Nicolas_upshift_promotors"
                     /id="U1037"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.962037962037962"
                     /psig="0.972027972027972"
                     /xcortree=641
                     /SigmaFactorBS="atatactttttacgttaagcagaaagtttttgcaaacttGGG
                     TCGTTtttttaaagcgaagTAGGTCAAAATAAGGAGACAcgatttatcaaaaaagtca
                     a"
                     /listShort="S459, ykaA, pit"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     misc_feature    complement(1238257..1238276)
                     /Source="Nicolas_upshift_promotors"
                     /id="U1038"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.677322677322677"
                     /psig="0.987012987012987"
                     /xcortree=1829
                     /SigmaFactorBS="ggaaccgttttttggtgaaacagaagataaaagttgacagga
                     aaaacacaactTTTGATATACTTTTTACGTTaagcagaaagtttttgcaaacttgggt
                     c"
                     /listShort="S459, ykaA, pit"
                     /GFF_Attribute="listLong"
                     /label="promotor_single_box"
                     /note="Geneious type: promotor_single_box"
     upshifts        complement(1238269)
                     /Source="Nicolas_upshifts"
                     /id="U1038"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.677322677322677"
                     /psig="0.987012987012987"
                     /xcortree=1829
                     /SigmaFactorBS="ggaaccgttttttggtgaaacagaagataaaagttgacagga
                     aaaacacaactTTTGATATACTTTTTACGTTaagcagaaagtttttgcaaacttgggt
                     c"
                     /listShort="S459, ykaA, pit"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             complement(1238351..1239667)
                     /gene="steT"
                     /locus_tag="BSU_12860"
                     /old_locus_tag="BSU12860"
                     /function="16.1: Circulate"
                     /experiment="publication(s) with functional evidences,
                     PMID:15849754, 16850406, 17344220, 19419962, 20610400"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 15849754, 16850406,
                     17344220, 19419962, 20610400; Product type t :
                     transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="serine / threonine exchanger"
                     /protein_id="NP_389169.1"
                     /db_xref="EnsemblGenomes-Gn:BSU12860"
                     /db_xref="EnsemblGenomes-Tr:CAB13143"
                     /db_xref="GOA:O34739"
                     /db_xref="InterPro:IPR002293"
                     /db_xref="SubtiList:BG13227"
                     /db_xref="UniProtKB/Swiss-Prot:O34739"
                     /translation="MHTEDNGLKKEIGLLFALTLVIGTIIGSGVFMKPGAVLAYSGDS
                     KMALFAWLLGGILTLAGGLTIAEIGTQIPKTGGLYTYLEEVYGEFWGFLCGWVQIIIY
                     GPAIIGALGLYFGSLMANLFGWGSGLSKVIGIIAVLFLCVINIIGTKYGGFVQTLTTI
                     GKLIPIACIIVFGLWKGDQHIFTAVNESISDMNFGAAILATLFAYDGWILLAALGGEM
                     KNPEKLLPRAMTGGLLIVTAIYIFINFALLHILSANEIVTLGENATSTAATMLFGSIG
                     GKLISVGIIVSIFGCLNGKVLSFPRVSFAMAERKQLPFAEKLSHVHPSFRTPWIAISF
                     QIALALIMMLISNPDKLSEISIFMIYIFYVMAFFAVFILRKRAKGEKRAYSVPLYPFM
                     PILAIAGSFFVLGSTLITDTMSCGLSILIGLAGLPVYYGMKKRKAS*"
                     /label="steT CDS"
     gene            complement(1238351..1239667)
                     /gene="steT"
                     /locus_tag="BSU_12860"
                     /old_locus_tag="BSU12860"
                     /label="steT gene"
     downshifts      complement(1238366)
                     /Source="Nicolas_upshifts"
                     /id="D700"
                     /incds=0
                     /nref=3
                     /ntot=92
                     /MaxReadThrough="3.59461"
                     /MaxDrop="3.97157"
                     /score="23.3119204"
                     /energy="-14.4"
                     /TU="U1039"
                     /idTUdmin="U1039"
                     /TUdmin="-88"
                     /isTUend="FALSE"
                     /label="downshifts"
     promotor_-10    complement(1239714..1239733)
                     /Source="Nicolas_upshift_promotors"
                     /id="U1039"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.633366633366633"
                     /psig="0.992007992007992"
                     /xcortree=2632
                     /SigmaFactorBS="gtacacaaagcaaatttcgaaaatcagaaaatttattttATT
                     TcacttttctaaaatAGGGTTTACAATATGAAAAAatagattcttcaacatgaagctt
                     c"
                     /listShort="ykbA"
                     /listLong="S459, ykaA, pit"
                     /label="promotor_-10"
     upshifts        complement(1239730)
                     /Source="Nicolas_upshifts"
                     /id="U1039"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.633366633366633"
                     /psig="0.992007992007992"
                     /xcortree=2632
                     /SigmaFactorBS="gtacacaaagcaaatttcgaaaatcagaaaatttattttATT
                     TcacttttctaaaatAGGGTTTACAATATGAAAAAatagattcttcaacatgaagctt
                     c"
                     /listShort="ykbA"
                     /listLong="S459, ykaA, pit"
                     /label="upshifts"
     promotor_-35    complement(1239748..1239751)
                     /Source="Nicolas_upshift_promotors"
                     /id="U1039"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.633366633366633"
                     /psig="0.992007992007992"
                     /xcortree=2632
                     /SigmaFactorBS="gtacacaaagcaaatttcgaaaatcagaaaatttattttATT
                     TcacttttctaaaatAGGGTTTACAATATGAAAAAatagattcttcaacatgaagctt
                     c"
                     /listShort="ykbA"
                     /listLong="S459, ykaA, pit"
                     /label="promotor_-35"
     promotor_-35    1239950..1239957
                     /Source="Nicolas_upshift_promotors"
                     /id="U1040"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.774225774225774"
                     /psig="0.964035964035964"
                     /xcortree=632
                     /SigmaFactorBS="tgaacgaaccttcggtgaagctgataTGTTGACTttctcatg
                     cgaataAAATACTTTGTTATTAGAACaataaatatacaattatgatatgatatctcga
                     a"
                     /listShort="S460, mhqA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    1239972..1239991
                     /Source="Nicolas_upshift_promotors"
                     /id="U1040"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.774225774225774"
                     /psig="0.964035964035964"
                     /xcortree=632
                     /SigmaFactorBS="tgaacgaaccttcggtgaagctgataTGTTGACTttctcatg
                     cgaataAAATACTTTGTTATTAGAACaataaatatacaattatgatatgatatctcga
                     a"
                     /listShort="S460, mhqA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     S_feature       1239984..1240055
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1353008_1353079"
                     /HighExp="Etha, dia15, Salt, Heat, dia5, Diami, H2O2,
                     M9-stat, MG 25, BMM"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.964"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S460"
     upshifts        1239984
                     /Source="Nicolas_upshifts"
                     /id="U1040"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.774225774225774"
                     /psig="0.964035964035964"
                     /xcortree=632
                     /SigmaFactorBS="tgaacgaaccttcggtgaagctgataTGTTGACTttctcatg
                     cgaataAAATACTTTGTTATTAGAACaataaatatacaattatgatatgatatctcga
                     a"
                     /listShort="S460, mhqA"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             1240056..1241006
                     /gene="mhqA"
                     /locus_tag="BSU_12870"
                     /old_locus_tag="BSU12870"
                     /EC_number="1.13.11.-"
                     /function="16.11: Scavenge (Catabolism)"
                     /function="16.6: Maintain"
                     /experiment="publication(s) with functional evidences,
                     PMID:17407181, 17725564"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 17407181, 17725564;
                     Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="hydroquinone-specific extradiol dioxygenase"
                     /protein_id="NP_389170.1"
                     /db_xref="EnsemblGenomes-Gn:BSU12870"
                     /db_xref="EnsemblGenomes-Tr:CAB13144"
                     /db_xref="GOA:O34689"
                     /db_xref="InterPro:IPR004360"
                     /db_xref="InterPro:IPR029068"
                     /db_xref="SubtiList:BG13228"
                     /db_xref="UniProtKB/Swiss-Prot:O34689"
                     /translation="MKVNGIHHVSALTADAQKNLDFYKKVLGLKLVKKSVNQDEPTMY
                     HLFYGDEVANPGTELTFFEIPRIAPFHAGTNSISSIGLRVPGTEALHYWKERFEEQQV
                     THSGISKRAGRDILAFQDHEGQRLVLTADEEGKGYGLPVKQSGIPEEFSFRGLGPVEL
                     TVPYAEPTLHVLTNILGFTEISREPVEGQGTAVILESGEGGAATEIHLIERNDLPRER
                     QGKGSVHHVAFRVRDEEELAGWHRIISREGFSNSGIVERYYFKALYFREPNGILFELS
                     TDGPGFMVDENLDELGQTIALPPYLEHRRAEIEAKLKPIQ*"
                     /label="mhqA CDS"
     gene            1240056..1241006
                     /gene="mhqA"
                     /locus_tag="BSU_12870"
                     /old_locus_tag="BSU12870"
                     /label="mhqA gene"
     downshifts      1240994
                     /Source="Nicolas_upshifts"
                     /id="D701"
                     /incds=0
                     /nref=95
                     /ntot=231
                     /MaxReadThrough="0.70251"
                     /MaxDrop="5.11652"
                     /score="51.2936135"
                     /energy="-17.5"
                     /TU="NA"
                     /idTUdmin="U1040"
                     /TUdmin="-2"
                     /isTUend="TRUE"
                     /label="downshifts"
     CDS             1241107..1241253
                     /locus_tag="BSU_12875"
                     /old_locus_tag="BSU12875"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 5: Unknown function"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_009513953.1"
                     /translation="MLIGRNGLKPFANMGDWYGMASAKILSLFINSLFIFACYTISKL
                     DKKE*"
                     /label="hypothetical protein CDS"
     gene            1241107..1241253
                     /locus_tag="BSU_12875"
                     /old_locus_tag="BSU12875"
                     /label="gene"
     CDS             1241261..1243411
                     /gene="ykcB"
                     /locus_tag="BSU_12880"
                     /old_locus_tag="BSU12880"
                     /EC_number="2.4.1.-"
                     /function="16.13: Shape"
                     /function="16.8: Protect"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 15849754, 16850406,
                     18175906; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative membrane glycosyl transferase"
                     /protein_id="NP_389171.2"
                     /db_xref="EnsemblGenomes-Gn:BSU12880"
                     /db_xref="EnsemblGenomes-Tr:CAB13145"
                     /db_xref="GOA:O34575"
                     /db_xref="SubtiList:BG13229"
                     /db_xref="UniProtKB/Swiss-Prot:O34575"
                     /translation="MEKKKRELDIVLLLILLASAFLNIYNIWKDDTVNPYYTAAVTSM
                     MQSFHNFFYASFDAAGFITVDKPPVTYQIQTISALIFGMHGWSVILPQALAGVGSVLL
                     MYLLIKPTFGKTAARIASFVMACTPIAVAVARTNNVDALLVFFLLLATWLLFKAIRKG
                     KLIWLLAAFFVVGVGFNTKMLQAYMILPAFLLFYLIAANATIKKKIVSLVSALAVLAA
                     VSLSWPLIVDNIPASKRPYIGSSQTNSVLELAFGYNGIQRLTGQNSGGGQGAPNKDAS
                     KEMSSSDNTQAPPNQSSSNSSSSDGKSSNGNMAAPPSNGQMPSGGQGGPPSGGDGGQG
                     GPGGDGGKGGTGTGSKMQSGSGMFGTGTPGPLRLFQQELSDQISWLLPFAIFGIAGLL
                     IAGARERRRLSVEQKETVFWVAWLVPIAGFFSVAEFFHHYYLIMLAPPIAALVGAGWV
                     ALVHLYRNQTGWKAWLLPGAIIATTGFELFILRNYNDQIGVGWSIGVGVIGVLSAIAL
                     LLFKQRQKPFSYYVSLAALLALLVMPMYWASTPLLYGGNSSLPETGPQLASMSGKGMG
                     MSDATVNEKLIKYLEENNSGAEYLFATTDSNTAAPYIIKTKKAVMAIGGYSGSDPAIT
                     LTQFKKLVKEGKVKYFLASGMGRGGNNDIVEWVEKNGKEVASEKWQSSSDQKTENTDS
                     ADTSSSKASGENGKMGGPGGMNQSATLYELHADE*"
                     /label="ykcB CDS"
     gene            1241261..1243411
                     /gene="ykcB"
                     /locus_tag="BSU_12880"
                     /old_locus_tag="BSU12880"
                     /label="ykcB gene"
     promotor_no_box 1242150..1242250
                     /Source="Nicolas_upshift_promotors"
                     /id="U1041"
                     /multdbtbs="-"
                     /comp="M13"
                     /sig="Sig-"
                     /pcomp="0.608391608391608"
                     /psig="0.000999000999001"
                     /xcortree=1488
                     /SigmaFactorBS="catcaagcgatggtaaatcctcaaatggcaatatggcggcgc
                     ctccatccaatggccaaatgccaagcggcggtcaaggaggccctccaagcggcggaga
                     t"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_no_box"
     upshifts        1242210
                     /Source="Nicolas_upshifts"
                     /id="U1041"
                     /multdbtbs="-"
                     /comp="M13"
                     /sig="Sig-"
                     /pcomp="0.608391608391608"
                     /psig="0.000999000999001"
                     /xcortree=1488
                     /SigmaFactorBS="catcaagcgatggtaaatcctcaaatggcaatatggcggcgc
                     ctccatccaatggccaaatgccaagcggcggtcaaggaggccctccaagcggcggaga
                     t"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     downshifts      1242298
                     /Source="Nicolas_upshifts"
                     /id="D702"
                     /incds=1
                     /nref=4
                     /ntot=10
                     /MaxReadThrough="0.56615"
                     /MaxDrop="4.44711"
                     /score="51.2936135"
                     /energy="-17.5"
                     /TU="NA"
                     /idTUdmin="U1041"
                     /TUdmin=0
                     /isTUend="TRUE"
                     /label="downshifts"
     CDS             1243423..1244394
                     /gene="ykcC"
                     /locus_tag="BSU_12890"
                     /old_locus_tag="BSU12890"
                     /EC_number="2.4.-.-"
                     /function="16.2: Construct biomass (Anabolism)"
                     /function="16.13: Shape"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative glycosyltransferase"
                     /protein_id="NP_389172.2"
                     /db_xref="EnsemblGenomes-Gn:BSU12890"
                     /db_xref="EnsemblGenomes-Tr:CAB13146"
                     /db_xref="GOA:O34319"
                     /db_xref="InterPro:IPR001173"
                     /db_xref="InterPro:IPR029044"
                     /db_xref="SubtiList:BG13230"
                     /db_xref="UniProtKB/Swiss-Prot:O34319"
                     /translation="MSRHIQYSIVVPVYNEELVIHETYQRLKEVMDQTKENYELLFVN
                     DGSKDRSIEILREHSLIDPRVKIIDFSRNFGHQIAITAGMDYAQGNAIVVIDADLQDP
                     PELILEMIEKWKEGYEVVYAVRTKRKGETFFKKQTAAMFYRLLSGMTDIDIPIDTGDF
                     RLMDRKVCDEMKRLKEKNPFVRGLVSWVGFKQTAVEYVRDERLAGETKYPLKKMLKLS
                     MDGITTFSHKPLKLASYAGILMSGTGFLYMFIVLYLKLFTDSTITGWSSLIVIQLLFS
                     GIVLLILGVIGEYIGRIYDEAKDRPLYIVQKSYGIENKRLYRDQHMS*"
                     /label="ykcC CDS"
     gene            1243423..1244394
                     /gene="ykcC"
                     /locus_tag="BSU_12890"
                     /old_locus_tag="BSU12890"
                     /label="ykcC gene"
     S_feature       complement(1243751..1244392)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1356775_1357416_c"
                     /HighExp="T-0.40H, T0.0H, Salt, T0.30H, T-1.10H, C30,
                     T-1.40H, S0, H2O2, T1.0H"
                     /AntisenseName="ykcC"
                     /AntisenseCor="9.6017422892053297E-4"
                     /AntisenseRegPval=0
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigWXY"
                     /TUshortPSig=1
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S461"
     downshifts      complement(1244437)
                     /Source="Nicolas_upshifts"
                     /id="D703"
                     /incds=0
                     /nref=9
                     /ntot=114
                     /MaxReadThrough="4.36795"
                     /MaxDrop="4.15844"
                     /score="4.98888048"
                     /energy="-19.1"
                     /TU="U1042"
                     /idTUdmin="U1044"
                     /TUdmin=489
                     /isTUend="FALSE"
                     /label="downshifts"
     S_feature       complement(1244462..1244828)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1357486_1357852_c"
                     /HighExp="T1.0H, T1.30H, T0.30H, T2.0H, T0.0H, T2.30H,
                     T-0.40H, T3.0H, Salt, T-1.10H"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="0.99893799999999999"
                     /TUshortSig="SigWXY"
                     /TUshortPSig=1
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S462"
     downshifts      complement(1244505)
                     /Source="Nicolas_upshifts"
                     /id="D704"
                     /incds=0
                     /nref=17
                     /ntot=157
                     /MaxReadThrough="6.61192"
                     /MaxDrop="3.74411"
                     /score="4.98888048"
                     /energy="-19.1"
                     /TU="U1042"
                     /idTUdmin="U1044"
                     /TUdmin=421
                     /isTUend="FALSE"
                     /label="downshifts"
     promotor_-10    complement(1244808..1244823)
                     /Source="Nicolas_upshift_promotors"
                     /id="U1042"
                     /multdbtbs="-"
                     /comp="M9"
                     /sig="SigWXY"
                     /pcomp=1
                     /psig=1
                     /xcortree=1700
                     /SigmaFactorBS="agcggtctgaggctttttattagataaaagacctaattgttc
                     taTGAAACTTTCtgacgagatatCCGTATATCATACAGAttgacatcattcacatcag
                     a"
                     /listShort="S462, S461"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(1244828)
                     /Source="Nicolas_upshifts"
                     /id="U1042"
                     /multdbtbs="-"
                     /comp="M9"
                     /sig="SigWXY"
                     /pcomp=1
                     /psig=1
                     /xcortree=1700
                     /SigmaFactorBS="agcggtctgaggctttttattagataaaagacctaattgttc
                     taTGAAACTTTCtgacgagatatCCGTATATCATACAGAttgacatcattcacatcag
                     a"
                     /listShort="S462, S461"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(1244835..1244844)
                     /Source="Nicolas_upshift_promotors"
                     /id="U1042"
                     /multdbtbs="-"
                     /comp="M9"
                     /sig="SigWXY"
                     /pcomp=1
                     /psig=1
                     /xcortree=1700
                     /SigmaFactorBS="agcggtctgaggctttttattagataaaagacctaattgttc
                     taTGAAACTTTCtgacgagatatCCGTATATCATACAGAttgacatcattcacatcag
                     a"
                     /listShort="S462, S461"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             complement(1244912..1246261)
                     /gene="htrA"
                     /locus_tag="BSU_12900"
                     /old_locus_tag="BSU12900"
                     /EC_number="3.4.21.107"
                     /function="16.6: Maintain"
                     /function="16.3: Control"
                     /experiment="publication(s) with functional evidences,
                     PMID:10692364, 11133960, 11555295, 12823817, 24362423"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 10692364, 11133960,
                     11555295, 12823817, 24362423; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="membrane bound serine protease Do, quality
                     control protease and chaperone (heat-shock protein)"
                     /protein_id="NP_389173.2"
                     /db_xref="EnsemblGenomes-Gn:BSU12900"
                     /db_xref="EnsemblGenomes-Tr:CAB13147"
                     /db_xref="GOA:O34358"
                     /db_xref="InterPro:IPR001478"
                     /db_xref="InterPro:IPR001940"
                     /db_xref="InterPro:IPR009003"
                     /db_xref="InterPro:IPR036034"
                     /db_xref="SubtiList:BG12608"
                     /db_xref="UniProtKB/Swiss-Prot:O34358"
                     /translation="MDNYRDENRTKGNENEVFLTKENDQSASYSARNVIHDQEKKKRG
                     FGWFRPLLGGVIGGSLALGIYTFTPLGDHDSQDTAKQSSSQQQTQSVTATSTSSESKK
                     SSSSSSAFKSEDSSKISDMVEDLSPAIVGITNLQAQSNSSLFGSSSSDSSEDTESGSG
                     SGVIFKKENGKAYIITNNHVVEGASSLKVSLYDGTEVTAKLVGSDSLTDLAVLQISDD
                     HVTKVANFGDSSDLRTGETVIAIGDPLGKDLSRTVTQGIVSGVDRTVSMSTSAGETSI
                     NVIQTDAAINPGNSGGPLLNTDGKIVGINSMKISEDDVEGIGFAIPSNDVKPIAEELL
                     SKGQIERPYIGVSMLDLEQVPQNYQEGTLGLFGSQLNKGVYIREVASGSPAEKAGLKA
                     EDIIIGLKGKEIDTGSELRNILYKDAKIGDTVEVKILRNGKEMTKKIKLDQKEEKTS*
                     "
                     /label="htrA CDS"
     gene            complement(1244912..1246261)
                     /gene="htrA"
                     /locus_tag="BSU_12900"
                     /old_locus_tag="BSU12900"
                     /label="htrA gene"
     downshifts      complement(1244926)
                     /Source="Nicolas_upshifts"
                     /id="D705"
                     /incds=0
                     /nref=198
                     /ntot=244
                     /MaxReadThrough="2.95586"
                     /MaxDrop="5.35972"
                     /score="30.7234179"
                     /energy="-19.9"
                     /TU="NA"
                     /idTUdmin="U1044"
                     /TUdmin=0
                     /isTUend="TRUE"
                     /label="downshifts"
     promotor_-35    1246301..1246308
                     /Source="Nicolas_upshift_promotors"
                     /id="U1043"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.948051948051948"
                     /psig="0.999000999001"
                     /xcortree=2991
                     /SigmaFactorBS="tcatgttcactccgtttctctattttcacatgtctatttaTA
                     TTGATAggtttatgacttgaGTTTATCATAAACAAAAACTgtgggataaaaatgaaaa
                     g"
                     /GFF_Attribute="listShort"
                     /listLong="proG"
                     /label="promotor_-35"
     promotor_-10    complement(1246313..1246332)
                     /Source="Nicolas_upshift_promotors"
                     /id="U1044"
                     /multdbtbs="SigA"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.865134865134865"
                     /psig="0.998001998001998"
                     /xcortree=1763
                     /SigmaFactorBS="tttccgcactttttcacaatttcccataatcttttcattttT
                     ATCCCACagtttttgttTATGATAAACTCAAGTCATAaacctatcaatataaatagac
                     a"
                     /listShort="htrA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        1246321
                     /Source="Nicolas_upshifts"
                     /id="U1043"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.948051948051948"
                     /psig="0.999000999001"
                     /xcortree=2991
                     /SigmaFactorBS="tcatgttcactccgtttctctattttcacatgtctatttaTA
                     TTGATAggtttatgacttgaGTTTATCATAAACAAAAACTgtgggataaaaatgaaaa
                     g"
                     /GFF_Attribute="listShort"
                     /listLong="proG"
                     /label="upshifts"
     promotor_-10    1246323..1246342
                     /Source="Nicolas_upshift_promotors"
                     /id="U1043"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.948051948051948"
                     /psig="0.999000999001"
                     /xcortree=2991
                     /SigmaFactorBS="tcatgttcactccgtttctctattttcacatgtctatttaTA
                     TTGATAggtttatgacttgaGTTTATCATAAACAAAAACTgtgggataaaaatgaaaa
                     g"
                     /GFF_Attribute="listShort"
                     /listLong="proG"
                     /label="promotor_-10"
     upshifts        complement(1246331)
                     /Source="Nicolas_upshifts"
                     /id="U1044"
                     /multdbtbs="SigA"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.865134865134865"
                     /psig="0.998001998001998"
                     /xcortree=1763
                     /SigmaFactorBS="tttccgcactttttcacaatttcccataatcttttcattttT
                     ATCCCACagtttttgttTATGATAAACTCAAGTCATAaacctatcaatataaatagac
                     a"
                     /listShort="htrA"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     S_feature       complement(1246333..1246415)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1359357_1359439_c"
                     /HighExp="Etha, dia5, S8, S6, T2.0H, T3.30H, dia15, T5.0H,
                     BC, Diami"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.682"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S463"
     promotor_-35    complement(1246343..1246350)
                     /Source="Nicolas_upshift_promotors"
                     /id="U1044"
                     /multdbtbs="SigA"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.865134865134865"
                     /psig="0.998001998001998"
                     /xcortree=1763
                     /SigmaFactorBS="tttccgcactttttcacaatttcccataatcttttcattttT
                     ATCCCACagtttttgttTATGATAAACTCAAGTCATAaacctatcaatataaatagac
                     a"
                     /listShort="htrA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-35    1246372..1246378
                     /Source="Nicolas_upshift_promotors"
                     /id="U1045"
                     /multdbtbs="-"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp="0.390609390609391"
                     /psig="0.994005994005994"
                     /xcortree=2259
                     /SigmaFactorBS="aaaaactgtgggataaaaatgaaaagattatgggaaATTGTG
                     AaaaagtgcggaaaaCGGTACACTTCATATTGTATatgaaaggactgagtcgatggaa
                     c"
                     /listShort="proG"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    1246393..1246412
                     /Source="Nicolas_upshift_promotors"
                     /id="U1045"
                     /multdbtbs="-"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp="0.390609390609391"
                     /psig="0.994005994005994"
                     /xcortree=2259
                     /SigmaFactorBS="aaaaactgtgggataaaaatgaaaagattatgggaaATTGTG
                     AaaaagtgcggaaaaCGGTACACTTCATATTGTATatgaaaggactgagtcgatggaa
                     c"
                     /listShort="proG"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        1246396
                     /Source="Nicolas_upshifts"
                     /id="U1045"
                     /multdbtbs="-"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp="0.390609390609391"
                     /psig="0.994005994005994"
                     /xcortree=2259
                     /SigmaFactorBS="aaaaactgtgggataaaaatgaaaagattatgggaaATTGTG
                     AaaaagtgcggaaaaCGGTACACTTCATATTGTATatgaaaggactgagtcgatggaa
                     c"
                     /listShort="proG"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-10    complement(1246398..1246417)
                     /Source="Nicolas_upshift_promotors"
                     /id="U1046"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.416583416583417"
                     /psig="0.682317682317682"
                     /xcortree=624
                     /SigmaFactorBS="tcatatccgccatgctgccatatccaatcaatccaatctGTT
                     CcatcgactcagtcctTTCATATACAATATGAAGTGtaccgttttccgcactttttca
                     c"
                     /listShort="S463, htrA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(1246415)
                     /Source="Nicolas_upshifts"
                     /id="U1046"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.416583416583417"
                     /psig="0.682317682317682"
                     /xcortree=624
                     /SigmaFactorBS="tcatatccgccatgctgccatatccaatcaatccaatctGTT
                     CcatcgactcagtcctTTCATATACAATATGAAGTGtaccgttttccgcactttttca
                     c"
                     /listShort="S463, htrA"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             1246430..1247248
                     /gene="proCC"
                     /locus_tag="BSU_12910"
                     /old_locus_tag="BSU12910"
                     /EC_number="1.5.1.2"
                     /function="16.8: Protect"
                     /function="16.11: Scavenge (Catabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:11418582"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 11418582; Product type e:
                     enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="redundant pyrroline-5-carboxylate reductase"
                     /protein_id="NP_389174.1"
                     /db_xref="EnsemblGenomes-Gn:BSU12910"
                     /db_xref="EnsemblGenomes-Tr:CAB13148"
                     /db_xref="GOA:Q00777"
                     /db_xref="InterPro:IPR000304"
                     /db_xref="InterPro:IPR008927"
                     /db_xref="InterPro:IPR028939"
                     /db_xref="InterPro:IPR029036"
                     /db_xref="InterPro:IPR036291"
                     /db_xref="SubtiList:BG10841"
                     /db_xref="UniProtKB/Swiss-Prot:Q00777"
                     /translation="MEQIGLIGYGSMADMIARQLLKHEQIKENELFIETRTKGERLRA
                     LMSDYPNVSADPLENWANTCQLILICVPPLHVIETMRRLYPYVNRNTHIVSIAAGVPL
                     RLLEAETEAGISRVIPAITSEAEAGISLVVHSEALAAEKKERLNELLSVFSRVREIKE
                     SNLDVASNLTSSAPGFIAAIFEELALSAVRNSSLSKEEAFDFLIHSLYGTGKMLIEKN
                     MSFEETLERVATKGGITGEGAEVIHASVPDVFDEVFERTLRKYELLTEQVGKQT*"
                     /label="proCC CDS"
     gene            1246430..1247248
                     /gene="proCC"
                     /locus_tag="BSU_12910"
                     /old_locus_tag="BSU12910"
                     /label="proCC gene"
     promotor_-35    complement(1246433..1246436)
                     /Source="Nicolas_upshift_promotors"
                     /id="U1046"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.416583416583417"
                     /psig="0.682317682317682"
                     /xcortree=624
                     /SigmaFactorBS="tcatatccgccatgctgccatatccaatcaatccaatctGTT
                     CcatcgactcagtcctTTCATATACAATATGAAGTGtaccgttttccgcactttttca
                     c"
                     /listShort="S463, htrA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     downshifts      1247226
                     /Source="Nicolas_upshifts"
                     /id="D706"
                     /incds=0
                     /nref=90
                     /ntot=220
                     /MaxReadThrough="1.3818"
                     /MaxDrop="4.43155"
                     /score="-5.08770006"
                     /energy="-5.3"
                     /TU="NA"
                     /idTUdmin="U1045"
                     /TUdmin=0
                     /isTUend="TRUE"
                     /label="downshifts"
     promotor_-35    1247305..1247312
                     /Source="Nicolas_upshift_promotors"
                     /id="U1047"
                     /multdbtbs="SigA"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.984015984015984"
                     /psig=1
                     /xcortree=2874
                     /SigmaFactorBS="tttatcactgaatgattgagatttttcccagttaTATTGCAT
                     ttttcctcttttttTAATATAATTTGTTAGAATAttcataatttagtaaaaaaggagg
                     a"
                     /listShort="dppA, dppB, dppC, dppD, dppE, ykfA, ykfB,
                     ykfC, ykfD, S465"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    1247327..1247346
                     /Source="Nicolas_upshift_promotors"
                     /id="U1047"
                     /multdbtbs="SigA"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.984015984015984"
                     /psig=1
                     /xcortree=2874
                     /SigmaFactorBS="tttatcactgaatgattgagatttttcccagttaTATTGCAT
                     ttttcctcttttttTAATATAATTTGTTAGAATAttcataatttagtaaaaaaggagg
                     a"
                     /listShort="dppA, dppB, dppC, dppD, dppE, ykfA, ykfB,
                     ykfC, ykfD, S465"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        1247331
                     /Source="Nicolas_upshifts"
                     /id="U1047"
                     /multdbtbs="SigA"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.984015984015984"
                     /psig=1
                     /xcortree=2874
                     /SigmaFactorBS="tttatcactgaatgattgagatttttcccagttaTATTGCAT
                     ttttcctcttttttTAATATAATTTGTTAGAATAttcataatttagtaaaaaaggagg
                     a"
                     /listShort="dppA, dppB, dppC, dppD, dppE, ykfA, ykfB,
                     ykfC, ykfD, S465"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             1247377..1248201
                     /gene="dppA"
                     /locus_tag="BSU_12920"
                     /old_locus_tag="BSU12920"
                     /EC_number="3.4.11.-"
                     /function="16.11: Scavenge (Catabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:11069674, 11473256, 19340926"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 11069674, 11473256,
                     19340926; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="D-alanyl-aminopeptidase"
                     /protein_id="NP_389175.2"
                     /db_xref="EnsemblGenomes-Gn:BSU12920"
                     /db_xref="EnsemblGenomes-Tr:CAB13149"
                     /db_xref="GOA:P26902"
                     /db_xref="InterPro:IPR007035"
                     /db_xref="InterPro:IPR027476"
                     /db_xref="InterPro:IPR033824"
                     /db_xref="InterPro:IPR036177"
                     /db_xref="PDB:1HI9"
                     /db_xref="SubtiList:BG10842"
                     /db_xref="UniProtKB/Swiss-Prot:P26902"
                     /translation="MKLYMSVDMEGISGLPDDTFVDSGKRNYERGRLIMTEEANYCIA
                     EAFNSGCTEVLVNDSHSKMNNLMVEKLHPEADLISGDVKPFSMVEGLDDTFRGALFLG
                     YHARASTPGVMSHSMIFGVRHFYINDRPVGELGLNAYVAGYYDVPVLMVAGDDRAAKE
                     AEELIPNVTTAAVKQTISRSAVKCLSPAKAGRLLTEKTAFALQNKDKVKPLTPPDRPV
                     LSIEFANYGQAEWANLMPGTEIKTGTTTVQFQAKDMLEAYQAMLVMTELAMRTSFC*"
                     /label="dppA CDS"
     gene            1247377..1248201
                     /gene="dppA"
                     /locus_tag="BSU_12920"
                     /old_locus_tag="BSU12920"
                     /label="dppA gene"
     CDS             1248218..1249144
                     /gene="dppB"
                     /locus_tag="BSU_12930"
                     /old_locus_tag="BSU12930"
                     /function="16.1: Circulate"
                     /experiment="publication(s) with functional evidences,
                     PMID:1766370, 7536291, 15849754, 16850406"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 1766370, 7536291,
                     15849754, 16850406; Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="dipeptide ABC transporter (permease)"
                     /protein_id="NP_389176.1"
                     /db_xref="EnsemblGenomes-Gn:BSU12930"
                     /db_xref="EnsemblGenomes-Tr:CAB13150"
                     /db_xref="GOA:P26903"
                     /db_xref="InterPro:IPR000515"
                     /db_xref="InterPro:IPR035906"
                     /db_xref="SubtiList:BG10843"
                     /db_xref="UniProtKB/Swiss-Prot:P26903"
                     /translation="MARYMIKRFWAMAATILVITTLTFVLMKVIPGSPFNEERGTNEA
                     VQKNLEAYYHLDDPLIFQYIFYLKSIITFDFGPSIKKPSDSVNDMLERGFPVSFELGM
                     TAIVIAVISGLVLGVIAALRRNGFLDYAAMSLAVLGISIPNFILATLLIQQFAVNLKL
                     FPAATWTSPIHMVLPTAALAVGPMAIIARLTRSSMVEVLTQDYIRTAKAKGLSPFKII
                     VKHALRNALMPVITVLGTLVASILTGSFVIEKIFAIPGMGKYFVESINQRDYPVIMGT
                     TVFYSVILIIMLFLVDLAYGLLDPRIKLHKKG*"
                     /label="dppB CDS"
     gene            1248218..1249144
                     /gene="dppB"
                     /locus_tag="BSU_12930"
                     /old_locus_tag="BSU12930"
                     /label="dppB gene"
     CDS             1249150..1250112
                     /gene="dppC"
                     /locus_tag="BSU_12940"
                     /old_locus_tag="BSU12940"
                     /function="16.1: Circulate"
                     /experiment="publication(s) with functional evidences,
                     PMID:1766370, 7536291, 15849754, 16850406"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 1766370, 7536291,
                     15849754, 16850406; Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="dipeptide ABC transporter (permease)"
                     /protein_id="NP_389177.1"
                     /db_xref="EnsemblGenomes-Gn:BSU12940"
                     /db_xref="EnsemblGenomes-Tr:CAB13151"
                     /db_xref="GOA:P26904"
                     /db_xref="InterPro:IPR000515"
                     /db_xref="InterPro:IPR025966"
                     /db_xref="InterPro:IPR035906"
                     /db_xref="SubtiList:BG10844"
                     /db_xref="UniProtKB/Swiss-Prot:P26904"
                     /translation="MNLPVQTDERQPEQHNQVPDEWFVLNQEKNREADSVKRPSLSYT
                     QDAWRRLKKNKLAMAGLFILLFLFVMAVIGPFLSPHSVVRQSLTEQNLPPSADHWFGT
                     DELGRDVFTRTWYGARISLFVGVMAALIDFLIGVIYGGVAGYKGGRIDSIMMRIIEVL
                     YGLPYLLVVILLMVLMGPGLGTIIVALTVTGWVGMARIVRGQVLQIKNYEYVLASKTF
                     GAKTFRIIRKNLLPNTMGAIIVQMTLTVPAAIFAESFLSFLGLGIQAPFASWGVMAND
                     GLPTILSGHWWRLFFPAFFISLTMYAFNVLGDGLQDALDPKLRR*"
                     /label="dppC CDS"
     gene            1249150..1250112
                     /gene="dppC"
                     /locus_tag="BSU_12940"
                     /old_locus_tag="BSU12940"
                     /label="dppC gene"
     promotor_-35    1249844..1249849
                     /Source="Nicolas_upshift_promotors"
                     /id="U1048"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.997002997002997"
                     /psig="0.997002997002997"
                     /xcortree=761
                     /SigmaFactorBS="cgcgaaaacctttcgcatcatccggaagaatttgctgcCGAA
                     TActatgggagcgatcaTCGTACAAATGACATTAACcgtacctgccgccatattcgca
                     g"
                     /listShort="dppD, dppE, ykfA, ykfB, ykfC, ykfD, S465"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    1249865..1249883
                     /Source="Nicolas_upshift_promotors"
                     /id="U1048"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.997002997002997"
                     /psig="0.997002997002997"
                     /xcortree=761
                     /SigmaFactorBS="cgcgaaaacctttcgcatcatccggaagaatttgctgcCGAA
                     TActatgggagcgatcaTCGTACAAATGACATTAACcgtacctgccgccatattcgca
                     g"
                     /listShort="dppD, dppE, ykfA, ykfB, ykfC, ykfD, S465"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        1249866
                     /Source="Nicolas_upshifts"
                     /id="U1048"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.997002997002997"
                     /psig="0.997002997002997"
                     /xcortree=761
                     /SigmaFactorBS="cgcgaaaacctttcgcatcatccggaagaatttgctgcCGAA
                     TActatgggagcgatcaTCGTACAAATGACATTAACcgtacctgccgccatattcgca
                     g"
                     /listShort="dppD, dppE, ykfA, ykfB, ykfC, ykfD, S465"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             1250117..1251124
                     /gene="dppD"
                     /locus_tag="BSU_12950"
                     /old_locus_tag="BSU12950"
                     /function="16.1: Circulate"
                     /experiment="publication(s) with functional evidences,
                     PMID:7536291"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 7536291; Product type t :
                     transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="dipeptide ABC transporter (ATP-binding subunit)"
                     /protein_id="NP_389178.1"
                     /db_xref="EnsemblGenomes-Gn:BSU12950"
                     /db_xref="EnsemblGenomes-Tr:CAB13152"
                     /db_xref="GOA:P26905"
                     /db_xref="InterPro:IPR003439"
                     /db_xref="InterPro:IPR003593"
                     /db_xref="InterPro:IPR013563"
                     /db_xref="InterPro:IPR017871"
                     /db_xref="InterPro:IPR027417"
                     /db_xref="SubtiList:BG10845"
                     /db_xref="UniProtKB/Swiss-Prot:P26905"
                     /translation="MEKVLSVQNLHVSFTTYGGTVQAVRGVSFDLYKGETFAIVGESG
                     CGKSVTSQSIMGLLPPYSAKVTDGRILFKNKDLCRLSDKEMRGIRGADISMIFQDPMT
                     ALNPTLTVGDQLGEALLRHKKMSKKAARKEVLSMLSLVGIPDPGERLKQYPHQFSGGM
                     RQRIVIAMALICEPDILIADEPTTALDVTIQAQILELFKEIQRKTDVSVILITHDLGV
                     VAQVADRVAVMYAGKMAEIGTRKDIFYQPQHPYTKGLLGSVPRLDLNGAELTPIDGTP
                     PDLFSPPPGCPFAARCPNRMVVCDRVYPGQTIRSDSHTVNCWLQDQRAEHAVLSGDAK
                     D*"
                     /label="dppD CDS"
     gene            1250117..1251124
                     /gene="dppD"
                     /locus_tag="BSU_12950"
                     /old_locus_tag="BSU12950"
                     /label="dppD gene"
     CDS             1251127..1252776
                     /gene="dppE"
                     /locus_tag="BSU_12960"
                     /old_locus_tag="BSU12960"
                     /function="16.1: Circulate"
                     /experiment="publication(s) with functional evidences,
                     PMID:7783641, 8793880, 11390694"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 7783641, 8793880,
                     11390694; Product type lp: lipoprotein"
                     /codon_start=1
                     /transl_table=11
                     /product="dipeptide ABC transporter (dipeptide-binding
                     lipoprotein)"
                     /protein_id="NP_389179.2"
                     /db_xref="EnsemblGenomes-Gn:BSU12960"
                     /db_xref="EnsemblGenomes-Tr:CAB13153"
                     /db_xref="GOA:P26906"
                     /db_xref="InterPro:IPR000914"
                     /db_xref="InterPro:IPR023765"
                     /db_xref="InterPro:IPR030678"
                     /db_xref="SubtiList:BG10846"
                     /db_xref="UniProtKB/Swiss-Prot:P26906"
                     /translation="MKRGKRMKRVKKLWGMGLALGLSFALMGCTANEQAGKEGSHDKA
                     KTSGEKVLYVNNENEPTSFDPPIGFNNVSWQPLNNIMEGLTRLGKDHEPEPAMAEKWS
                     VSKDNKTYTFTIRENAKWTNGDPVTAGDFEYAWKRMLDPKKGASSAFLGYFIEGGEAY
                     NSGKGKKDDVKVTAKDDRTLEVTLEAPQKYFLSVVSNPAYFPVNEKVDKDNPKWFAES
                     DTFVGNGPFKLTEWKHDDSITMEKSDTYWDKDTVKLDKVKWAMVSDRNTDYQMFQSGE
                     LDTAYVPAELSDQLLDQDNVNIVDQAGLYFYRFNVNMEPFQNENIRKAFAMAVDQEEI
                     VKYVTKNNEKPAHAFVSPGFTQPDGKDFREAGGDLIKPNESKAKQLLEKGMKEENYNK
                     LPAITLTYSTKPEHKKIAEAIQQKLKNSLGVDVKLANMEWNVFLEDQKALKFQFSQSS
                     FLPDYADPISFLEAFQTGNSMNRTGWANKEYDQLIKQAKNEADEKTRFSLMHQAEELL
                     INEAPIIPVYFYNQVHLQNEQVKGIVRHPVGYIDLKWADKN*"
                     /label="dppE CDS"
     gene            1251127..1252776
                     /gene="dppE"
                     /locus_tag="BSU_12960"
                     /old_locus_tag="BSU12960"
                     /label="dppE gene"
     downshifts      1252770
                     /Source="Nicolas_upshifts"
                     /id="D707"
                     /incds=0
                     /nref=2
                     /ntot=25
                     /MaxReadThrough="6.73127"
                     /MaxDrop="3.5888"
                     /score="22.838155"
                     /energy="-13.9"
                     /TU="U1047,U1048"
                     /idTUdmin="U1048"
                     /TUdmin="-4469"
                     /isTUend="FALSE"
                     /label="downshifts"
     CDS             1252864..1253823
                     /gene="ldcA"
                     /locus_tag="BSU_12970"
                     /old_locus_tag="BSU12970"
                     /EC_number="3.4.17.-"
                     /function="16.11: Scavenge (Catabolism)"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 2a: Function from experimental evidences
                     in other organisms; PubMedId: 10428950, 15101989,
                     18535144, 20944232, 24123814; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="muropeptide L,D-carboxypeptidase"
                     /protein_id="NP_389180.2"
                     /db_xref="EnsemblGenomes-Gn:BSU12970"
                     /db_xref="EnsemblGenomes-Tr:CAB13154"
                     /db_xref="GOA:O34851"
                     /db_xref="InterPro:IPR003507"
                     /db_xref="InterPro:IPR027461"
                     /db_xref="InterPro:IPR027478"
                     /db_xref="InterPro:IPR029062"
                     /db_xref="SubtiList:BG13231"
                     /db_xref="UniProtKB/Swiss-Prot:O34851"
                     /translation="MKGVFSLNYKPKALNKGDTVGVIAPASPPDPKKLDTALLFLEEL
                     GLQVKLGKALKNQHGYLAGQDDERLADLHEMFRDDEVKAVLCACGGFGTGRIAAGIDF
                     SLIRKHPKIFWGYSDITFLHTAIHQNTGLVTFHGPMLSTDIGLDDVHPLTKASYKQLF
                     QETEFTYTEELSPLTELVPGKAEGELVGGNLSLLTSTLGTPFEIDTRGKLLFIEDIDE
                     EPYQIDRMLNQLKMGGKLTDAAGILVCDFHNCVPVKREKSLSLEQVLEDYIISAGRPA
                     LRGFKIGHCSPSIAVPIGAKAAMNTAEKTAVIEAGVSEGALKT*"
                     /label="ldcA CDS"
     gene            1252864..1253823
                     /gene="ldcA"
                     /locus_tag="BSU_12970"
                     /old_locus_tag="BSU12970"
                     /label="ldcA gene"
     CDS             1253820..1254920
                     /gene="aeeB"
                     /locus_tag="BSU_12980"
                     /old_locus_tag="BSU12980"
                     /EC_number="5.1.1.20"
                     /function="16.11: Scavenge (Catabolism)"
                     /function="16.5: Explore"
                     /function="16.6: Maintain"
                     /experiment="publication(s) with functional evidences,
                     PMID:11747447, 11747448, 15101989"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 11747447, 11747448,
                     15101989; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="L-Ala-D/L-Glu epimerase"
                     /protein_id="NP_389181.1"
                     /db_xref="EnsemblGenomes-Gn:BSU12980"
                     /db_xref="EnsemblGenomes-Tr:CAB13155"
                     /db_xref="GOA:O34508"
                     /db_xref="InterPro:IPR013341"
                     /db_xref="InterPro:IPR013342"
                     /db_xref="InterPro:IPR029017"
                     /db_xref="InterPro:IPR029065"
                     /db_xref="InterPro:IPR034390"
                     /db_xref="InterPro:IPR036849"
                     /db_xref="PDB:1JPM"
                     /db_xref="PDB:1TKK"
                     /db_xref="SubtiList:BG13232"
                     /db_xref="UniProtKB/Swiss-Prot:O34508"
                     /translation="MKIIRIETSRIAVPLTKPFKTALRTVYTAESVIVRITYDSGAVG
                     WGEAPPTLVITGDSMDSIESAIHHVLKPALLGKSLAGYEAILHDIQHLLTGNMSAKAA
                     VEMALYDGWAQMCGLPLYQMLGGYRDTLETDYTVSVNSPEEMAADAENYLKQGFQTLK
                     IKVGKDDIATDIARIQEIRKRVGSAVKLRLDANQGWRPKEAVTAIRKMEDAGLGIELV
                     EQPVHKDDLAGLKKVTDATDTPIMADESVFTPRQAFEVLQTRSADLINIKLMKAGGIS
                     GAEKINAMAEACGVECMVGSMIETKLGITAAAHFAASKRNITRFDFDAPLMLKTDVFN
                     GGITYSGSTISMPGKPGLGIIGAALLKGEKEQ*"
                     /label="aeeB CDS"
     gene            1253820..1254920
                     /gene="aeeB"
                     /locus_tag="BSU_12980"
                     /old_locus_tag="BSU12980"
                     /label="aeeB gene"
     CDS             1254917..1255807
                     /gene="eepC"
                     /locus_tag="BSU_12990"
                     /old_locus_tag="BSU12990"
                     /EC_number="3.4.-.-"
                     /function="16.11: Scavenge (Catabolism)"
                     /function="16.5: Explore"
                     /experiment="publication(s) with functional evidences,
                     PMID:15101989, 20944232"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 15101989, 20944232;
                     Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="gamma-D-glutamyl-L-diaminoacid endopeptidase"
                     /protein_id="NP_389182.2"
                     /db_xref="EnsemblGenomes-Gn:BSU12990"
                     /db_xref="EnsemblGenomes-Tr:CAB13156"
                     /db_xref="GOA:O35010"
                     /db_xref="InterPro:IPR000064"
                     /db_xref="SubtiList:BG13233"
                     /db_xref="UniProtKB/Swiss-Prot:O35010"
                     /translation="MMHTVISAVANIWTAPDSPRPSDQFMLQPTVMIRDWLERMTYDE
                     RLGLCTDNVIQTQVLFGEKVLVTAEQGEWVSVIVPSQPSRKDPRGYPGWMKKYQLEKT
                     KPIHTQHDVMISKPAAFLYRSNGEKEIELSFLTVLPLIAKENGYFKVSTVFGERFVRQ
                     SDAVPVSQQKGTAEDIIQTGAFFLGLPYLWGGISGFGFDCSGFMYSIFKANGYSIPRD
                     AGDQAKAGKGVPLDDMKAGDLLFFAYEEGKGAIHHVGLYVGGGKMLHSPKTGKSIEIL
                     TLTETIYEKELCAVRRCFSE*"
                     /label="eepC CDS"
     gene            1254917..1255807
                     /gene="eepC"
                     /locus_tag="BSU_12990"
                     /old_locus_tag="BSU12990"
                     /label="eepC gene"
     CDS             1255820..1256809
                     /gene="ykfD"
                     /locus_tag="BSU_13000"
                     /old_locus_tag="BSU13000"
                     /function="16.1: Circulate"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 15101989; Product type
                     t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="putative cell wall oligopeptide ABC transporter
                     (ATP binding protein)"
                     /protein_id="NP_389183.2"
                     /db_xref="EnsemblGenomes-Gn:BSU13000"
                     /db_xref="EnsemblGenomes-Tr:CAB13157"
                     /db_xref="GOA:C0SP98"
                     /db_xref="InterPro:IPR003439"
                     /db_xref="InterPro:IPR003593"
                     /db_xref="InterPro:IPR013563"
                     /db_xref="InterPro:IPR017871"
                     /db_xref="InterPro:IPR027417"
                     /db_xref="SubtiList:BG13234"
                     /db_xref="UniProtKB/Swiss-Prot:C0SP98"
                     /translation="MRRLPLLEVSQLKMHFDAGKKRTVKAVDGVTFQIREGETFGLVG
                     ESGCGKSTLGRVLMRLYQPTEGSVTYRGTNLHALSEKEQFAFNRKLQMIFQDPYASLN
                     PRMTVREIILEPMEIHNLYNTHKARLLVVDELLEAVGLHPDFGSRYPHEFSGGQRQRI
                     GIARALSLNPEFIVADEPISALDVSVQAQVVNLLKRLQKEKGLTFLFIAHDLSMVKHI
                     SDRIGVMYLGHMMEITESGTLYREPLHPYTKALLSSIPIPDPELEDKRERILLKGELP
                     SPVNPPSGCVFRTRCPEAMPECGESRPQLQEIEPGRFVACHLYRNAETKEKVR*"
                     /label="ykfD CDS"
     gene            1255820..1256809
                     /gene="ykfD"
                     /locus_tag="BSU_13000"
                     /old_locus_tag="BSU13000"
                     /label="ykfD gene"
     S_feature       complement(1256103..1256830)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1369127_1369854_c"
                     /HighExp="Etha, S7, Gly, M40t90, C30, H2O2, M0t90, dia15,
                     T1.0H, S8"
                     /AntisenseName="ykfD"
                     /AntisenseCor="-6.3474114158352593E-2"
                     /AntisenseRegPval="-0.5"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigB"
                     /TUshortPSig=1
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S464"
     downshifts      1256799
                     /Source="Nicolas_upshifts"
                     /id="D708"
                     /incds=0
                     /nref=1
                     /ntot=91
                     /MaxReadThrough="5.08319"
                     /MaxDrop="3.1399"
                     /score="-3.10371155"
                     /energy="-13.9"
                     /TU="U1047,U1048"
                     /idTUdmin="U1048"
                     /TUdmin="-440"
                     /isTUend="FALSE"
                     /label="downshifts"
     S_feature       1256844..1258012
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1369868_1371036"
                     /HighExp="T3.30H, T4.0H, T3.0H, T5.0H, T2.30H, T2.0H, S1,
                     M9-stat, T1.30H, HiOs"
                     /AntisenseName="ykgB"
                     /AntisenseCor="-0.33524952291190102"
                     /AntisenseRegPval="-7.8"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigEF, SigA"
                     /TUshortPSig="0.997, 1"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S465"
     CDS             complement(1256852..1257901)
                     /gene="pgl"
                     /locus_tag="BSU_13010"
                     /old_locus_tag="BSU13010"
                     /EC_number="3.1.1.31"
                     /function="16.2: Construct biomass (Anabolism)"
                     /function="16.11: Scavenge (Catabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:22960854, 28032445"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 22960854, 28032445;
                     Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="6-phosphogluconolactonase"
                     /protein_id="NP_389184.1"
                     /db_xref="EnsemblGenomes-Gn:BSU13010"
                     /db_xref="EnsemblGenomes-Tr:CAB13158"
                     /db_xref="GOA:O34499"
                     /db_xref="InterPro:IPR011048"
                     /db_xref="InterPro:IPR015943"
                     /db_xref="InterPro:IPR019405"
                     /db_xref="SubtiList:BG13236"
                     /db_xref="UniProtKB/Swiss-Prot:O34499"
                     /translation="MTKYIGYVGTYTKGGSEGIYSFELDTEKKALSEPKLAAKLGNPT
                     YVATNKNNTILYSIEKADGQGGVAAYQIDKNSGELTFLNHQLIDGPSPCHVSVDDQNQ
                     FVLTANYHSGKVHVFPVQEDGSLQSPVSEAAHTGKGPHERQEKPHTHYAGFTPEHNYV
                     VAVDLGIDKLYTYKLKDGVLTESGSHSFAPGAGPRHIAFHPKEKYAYVMTELSNEVIA
                     LEYNPTAGEFREIQVVSAIPDDFTDNSQGSAIHVTQDGRFVYVANRGHDSIAVFEVNQ
                     YSGELAFVERVSTEGNWPRDFVFDPTEGFLVASNEETGNLVLFERDKETGRLTLLPST
                     VSVPYPVCVKFLHQV*"
                     /label="pgl CDS"
     gene            complement(1256852..1257901)
                     /gene="pgl"
                     /locus_tag="BSU_13010"
                     /old_locus_tag="BSU13010"
                     /label="pgl gene"
     downshifts      complement(1256875)
                     /Source="Nicolas_upshifts"
                     /id="D709"
                     /incds=0
                     /nref=208
                     /ntot=262
                     /MaxReadThrough="5.12776"
                     /MaxDrop="6.0668"
                     /score="24.6986564"
                     /energy="-15.6"
                     /TU="U1050"
                     /idTUdmin="U1049"
                     /TUdmin=0
                     /isTUend="TRUE"
                     /label="downshifts"
     promotor_-10    complement(1257928..1257947)
                     /Source="Nicolas_upshift_promotors"
                     /id="U1049"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.524475524475524"
                     /psig="0.996003996003996"
                     /xcortree=2235
                     /SigmaFactorBS="ggcgaatgaagaatcttcccctttttcatgTTTTGAACagct
                     tattttatcaAGATACGTTAATATAGAGGTgacatcatttttaagggggaaatcgcat
                     g"
                     /listShort="ykgB"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(1257939)
                     /Source="Nicolas_upshifts"
                     /id="U1049"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.524475524475524"
                     /psig="0.996003996003996"
                     /xcortree=2235
                     /SigmaFactorBS="ggcgaatgaagaatcttcccctttttcatgTTTTGAACagct
                     tattttatcaAGATACGTTAATATAGAGGTgacatcatttttaagggggaaatcgcat
                     g"
                     /listShort="ykgB"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(1257962..1257969)
                     /Source="Nicolas_upshift_promotors"
                     /id="U1049"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.524475524475524"
                     /psig="0.996003996003996"
                     /xcortree=2235
                     /SigmaFactorBS="ggcgaatgaagaatcttcccctttttcatgTTTTGAACagct
                     tattttatcaAGATACGTTAATATAGAGGTgacatcatttttaagggggaaatcgcat
                     g"
                     /listShort="ykgB"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             complement(1257991..1258851)
                     /gene="ddaH"
                     /locus_tag="BSU_13020"
                     /old_locus_tag="BSU13020"
                     /EC_number="3.5.3.18"
                     /function="16.11: Scavenge (Catabolism)"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 2a: Function from experimental evidences
                     in other organisms; PubMedId: 27258038; Product type e :
                     enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="N(G),N(G)-dimethylarginine
                     dimethylaminohydrolase"
                     /protein_id="NP_389185.2"
                     /db_xref="EnsemblGenomes-Gn:BSU13020"
                     /db_xref="EnsemblGenomes-Tr:CAB13159"
                     /db_xref="GOA:O34497"
                     /db_xref="InterPro:IPR033199"
                     /db_xref="SubtiList:BG13235"
                     /db_xref="UniProtKB/Swiss-Prot:O34497"
                     /translation="MDVSIPKSQHKTVCRTEYGTLQKVILCKPEHMTIKDVINETQKH
                     FEDDNIHVKTANDQHSRLVEALRSHNVEVVLLPVRDGLPEQVFTRDIGFVIGEKAFLS
                     SMTEPIRQGEEAVIKDFFHSQGISYTRMLDTSIEGGDVIIDDDIVYVGISQRTDISAI
                     GQLEEALPEYTIVPVKLHEKFLHLDCVFNIISESEALIYSQAIEPDAADMLAKRYDLI
                     EVPEDEQFTLGTNVLSIGKKTIISLPGNRHVNQQLSKRGYHIIEIDLSEIIKSGGSFR
                     CCTMPLIRGE*"
                     /label="ddaH CDS"
     gene            complement(1257991..1258851)
                     /gene="ddaH"
                     /locus_tag="BSU_13020"
                     /old_locus_tag="BSU13020"
                     /label="ddaH gene"
     promotor_-10    complement(1258876..1258894)
                     /Source="Nicolas_upshift_promotors"
                     /id="U1050"
                     /multdbtbs="SigB"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp=1
                     /psig=1
                     /xcortree=242
                     /SigmaFactorBS="aaacaatattctcttccatttgtctaaaatttaaaatGGTTT
                     AAtgattttcatgatgaGGGAATAATAAATGTATTCttcacactttaggaggaaaaac
                     a"
                     /listShort="ykgA, ykgB, S464"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(1258893)
                     /Source="Nicolas_upshifts"
                     /id="U1050"
                     /multdbtbs="SigB"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp=1
                     /psig=1
                     /xcortree=242
                     /SigmaFactorBS="aaacaatattctcttccatttgtctaaaatttaaaatGGTTT
                     AAtgattttcatgatgaGGGAATAATAAATGTATTCttcacactttaggaggaaaaac
                     a"
                     /listShort="ykgA, ykgB, S464"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(1258910..1258916)
                     /Source="Nicolas_upshift_promotors"
                     /id="U1050"
                     /multdbtbs="SigB"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp=1
                     /psig=1
                     /xcortree=242
                     /SigmaFactorBS="aaacaatattctcttccatttgtctaaaatttaaaatGGTTT
                     AAtgattttcatgatgaGGGAATAATAAATGTATTCttcacactttaggaggaaaaac
                     a"
                     /listShort="ykgA, ykgB, S464"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-35    1258925..1258932
                     /Source="Nicolas_upshift_promotors"
                     /id="U1051"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.933066933066933"
                     /psig=1
                     /xcortree=2004
                     /SigmaFactorBS="cctcatcatgaaaatcattaaaccattttaaaTTTTAGACaa
                     atggaagagaaTATTGTTTAATAGGAGAATAtaagtgcatttagctaaaagatcagac
                     a"
                     /listShort="ykhA, S466, hmp"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    1258946..1258965
                     /Source="Nicolas_upshift_promotors"
                     /id="U1051"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.933066933066933"
                     /psig=1
                     /xcortree=2004
                     /SigmaFactorBS="cctcatcatgaaaatcattaaaccattttaaaTTTTAGACaa
                     atggaagagaaTATTGTTTAATAGGAGAATAtaagtgcatttagctaaaagatcagac
                     a"
                     /listShort="ykhA, S466, hmp"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        1258953
                     /Source="Nicolas_upshifts"
                     /id="U1051"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.933066933066933"
                     /psig=1
                     /xcortree=2004
                     /SigmaFactorBS="cctcatcatgaaaatcattaaaccattttaaaTTTTAGACaa
                     atggaagagaaTATTGTTTAATAGGAGAATAtaagtgcatttagctaaaagatcagac
                     a"
                     /listShort="ykhA, S466, hmp"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             1259011..1259529
                     /gene="ykhA"
                     /locus_tag="BSU_13030"
                     /old_locus_tag="BSU13030"
                     /EC_number="3.1.2.-"
                     /function="16.11: Scavenge (Catabolism)"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 2a: Function from experimental evidences
                     in other organisms; PubMedId: 12426338, 18247525,
                     24623648, 24722906; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="promiscuous acyl-CoA thioesterase"
                     /protein_id="NP_389186.2"
                     /db_xref="EnsemblGenomes-Gn:BSU13030"
                     /db_xref="EnsemblGenomes-Tr:CAB13160"
                     /db_xref="GOA:P49851"
                     /db_xref="InterPro:IPR006683"
                     /db_xref="InterPro:IPR029069"
                     /db_xref="InterPro:IPR033120"
                     /db_xref="SubtiList:BG11417"
                     /db_xref="UniProtKB/Swiss-Prot:P49851"
                     /translation="METPETRFCKESKVVKTSRVFPLDTNNHNTLFGGKLMSYIDDIA
                     SISAARHCRRETVTASMDSVDFLKPIGQKDSVCLESYVTWVGTSSMEVFVKVIKEHLM
                     TGERELAATSFLTFVALDSNGKPVPVPRVVPETEEEIMLHNTAVQRANERKNRKRHSQ
                     ALANALGTDKPW*"
                     /label="ykhA CDS"
     gene            1259011..1259529
                     /gene="ykhA"
                     /locus_tag="BSU_13030"
                     /old_locus_tag="BSU13030"
                     /label="ykhA gene"
     downshifts      1259520
                     /Source="Nicolas_upshifts"
                     /id="D710"
                     /incds=0
                     /nref=34
                     /ntot=265
                     /MaxReadThrough="4.66856"
                     /MaxDrop="4.77681"
                     /score="24.0889455"
                     /energy="-10.9"
                     /TU="U1051"
                     /idTUdmin="U1051"
                     /TUdmin="-1436"
                     /isTUend="FALSE"
                     /label="downshifts"
     promotor_-35    1259594..1259600
                     /Source="Nicolas_upshift_promotors"
                     /id="U1052"
                     /multdbtbs="-"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp="0.998001998001998"
                     /psig="0.998001998001998"
                     /xcortree=854
                     /SigmaFactorBS="tgttttgggtttttttgtacttttcaatggtgattattacaa
                     TGGTTAGtccgtttttgctaGGGGATTCTATAaaaaagcaacaaatgtcatgttaaat
                     t"
                     /listShort="S466, hmp"
                     /listLong="S467, ykjA, ykkA"
                     /label="promotor_-35"
     S_feature       1259612..1259718
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1372636_1372742"
                     /HighExp="Etha, S5, S6, S8, nit, S7, ferm, S4, dia15,
                     dia5"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigGF, SigA"
                     /TUshortPSig="0.998, 1"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S466"
     upshifts        1259612
                     /Source="Nicolas_upshifts"
                     /id="U1052"
                     /multdbtbs="-"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp="0.998001998001998"
                     /psig="0.998001998001998"
                     /xcortree=854
                     /SigmaFactorBS="tgttttgggtttttttgtacttttcaatggtgattattacaa
                     TGGTTAGtccgtttttgctaGGGGATTCTATAaaaaagcaacaaatgtcatgttaaat
                     t"
                     /listShort="S466, hmp"
                     /listLong="S467, ykjA, ykkA"
                     /label="upshifts"
     promotor_-10    1259614..1259625
                     /Source="Nicolas_upshift_promotors"
                     /id="U1052"
                     /multdbtbs="-"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp="0.998001998001998"
                     /psig="0.998001998001998"
                     /xcortree=854
                     /SigmaFactorBS="tgttttgggtttttttgtacttttcaatggtgattattacaa
                     TGGTTAGtccgtttttgctaGGGGATTCTATAaaaaagcaacaaatgtcatgttaaat
                     t"
                     /listShort="S466, hmp"
                     /listLong="S467, ykjA, ykkA"
                     /label="promotor_-10"
     promotor_-35    1259693..1259696
                     /Source="Nicolas_upshift_promotors"
                     /id="U1053"
                     /multdbtbs="SigA"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.452547452547453"
                     /psig="0.99000999000999"
                     /xcortree=1618
                     /SigmaFactorBS="ttgtgacaactttattaaagattcattttagatATATctttt
                     attcgtaagaTCATGTATTTTAAAGATATAttttaaatacatcttttcgaaaggattg
                     t"
                     /listShort="hmp, S467, ykjA, ykkA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    1259712..1259731
                     /Source="Nicolas_upshift_promotors"
                     /id="U1053"
                     /multdbtbs="SigA"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.452547452547453"
                     /psig="0.99000999000999"
                     /xcortree=1618
                     /SigmaFactorBS="ttgtgacaactttattaaagattcattttagatATATctttt
                     attcgtaagaTCATGTATTTTAAAGATATAttttaaatacatcttttcgaaaggattg
                     t"
                     /listShort="hmp, S467, ykjA, ykkA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        1259720
                     /Source="Nicolas_upshifts"
                     /id="U1053"
                     /multdbtbs="SigA"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.452547452547453"
                     /psig="0.99000999000999"
                     /xcortree=1618
                     /SigmaFactorBS="ttgtgacaactttattaaagattcattttagatATATctttt
                     attcgtaagaTCATGTATTTTAAAGATATAttttaaatacatcttttcgaaaggattg
                     t"
                     /listShort="hmp, S467, ykjA, ykkA"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             1259768..1260967
                     /gene="hmpA"
                     /locus_tag="BSU_13040"
                     /old_locus_tag="BSU13040"
                     /function="16.8: Protect"
                     /experiment="publication(s) with functional evidences,
                     PMID:10658656, 10972836, 12469342, 15231799, 15751990,
                     16261196, 16517672, 17293416, 24214949, 26786044"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 10658656, 10972836,
                     12469342, 15231799, 15751990, 16261196, 16517672,
                     17293416, 24214949, 26786044; Product type c: carrier"
                     /codon_start=1
                     /transl_table=11
                     /product="flavohemoglobin"
                     /protein_id="NP_389187.1"
                     /db_xref="EnsemblGenomes-Gn:BSU13040"
                     /db_xref="EnsemblGenomes-Tr:CAB13161"
                     /db_xref="GOA:P49852"
                     /db_xref="InterPro:IPR000971"
                     /db_xref="InterPro:IPR001221"
                     /db_xref="InterPro:IPR001433"
                     /db_xref="InterPro:IPR008333"
                     /db_xref="InterPro:IPR009050"
                     /db_xref="InterPro:IPR017927"
                     /db_xref="InterPro:IPR017938"
                     /db_xref="InterPro:IPR023950"
                     /db_xref="SubtiList:BG11418"
                     /db_xref="UniProtKB/Swiss-Prot:P49852"
                     /translation="MLDNKTIEIIKSTVPVLQQHGETITGRFYDRMFQDHPELLNIFN
                     QTNQKKKTQRTALANAVIAAAANIDQLGNIIPVVKQIGHKHRSIGIKPEHYPIVGKYL
                     LIAIKDVLGDAATPDIMQAWEKAYGVIADAFIGIEKDMYEQAEEQAGGWKEYKPFVIA
                     KKERESKEITSFYLKPEDSKPLPEFQAGQYISIKVRIPDSEYTHIRQYSLSDMPGKDY
                     YRISVKKDGVVSSYLHDGLQEGDSIEISAPAGDFVLDHASQKDLVLISAGVGITPMIS
                     MLKTSVSKQPERQILFIHAAKNSEYHALRHEVEEAAKHSAVKTAFVYREPTEEDRAGD
                     LHFHEGQIDQQFLKELIANTDADYYICGSPSFITAMHKLVSELGSAPESIHYELFGPQ
                     LSLAQSV*"
                     /label="hmpA CDS"
     gene            1259768..1260967
                     /gene="hmpA"
                     /locus_tag="BSU_13040"
                     /old_locus_tag="BSU13040"
                     /label="hmpA gene"
     downshifts      1260956
                     /Source="Nicolas_upshifts"
                     /id="D711"
                     /incds=0
                     /nref=10
                     /ntot=59
                     /MaxReadThrough="6.06442"
                     /MaxDrop="4.19301"
                     /score="11.2868967"
                     /energy="-9.3"
                     /TU="U1053"
                     /idTUdmin="U1051"
                     /TUdmin=0
                     /isTUend="TRUE"
                     /label="downshifts"
     S_feature       1261001..1261372
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1374025_1374396"
                     /HighExp="nit, B36, B60, Etha, BI, M40t90, LBGtran, M0t90,
                     BT, S6"
                     /AntisenseName="ykzH"
                     /AntisenseCor="7.6554747052539299E-2"
                     /AntisenseRegPval="-0.7"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.99"
                     /TUlongSig="SigGF"
                     /TUlongPSig="0.998"
                     /label="S467"
     CDS             complement(1261044..1261268)
                     /gene="ykzH"
                     /locus_tag="BSU_13050"
                     /old_locus_tag="BSU13050"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved hypothetical protein"
                     /protein_id="NP_389188.1"
                     /db_xref="EnsemblGenomes-Gn:BSU13050"
                     /db_xref="EnsemblGenomes-Tr:CAB13162"
                     /db_xref="SubtiList:BG13336"
                     /db_xref="UniProtKB/Swiss-Prot:O31653"
                     /translation="MKNQKSNTLWPFDLPLAPQPEGYQQQTIDRLAGLELRMKQLIRA
                     IEVNNELLRTMQEQQNRVCTNGSGSVIVRM*"
                     /label="ykzH CDS"
     gene            complement(1261044..1261268)
                     /gene="ykzH"
                     /locus_tag="BSU_13050"
                     /old_locus_tag="BSU13050"
                     /label="ykzH gene"
     promotor_-35    1261348..1261354
                     /Source="Nicolas_upshift_promotors"
                     /id="U1054"
                     /multdbtbs="-"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp="0.999000999001"
                     /psig="0.999000999001"
                     /xcortree=927
                     /SigmaFactorBS="gttcaggcgatatgcacgttcgcctagacactgaTGCATAGa
                     gggcctgccacgGGGCACAATAGGctcaatatgaccagcggatggaggtaaagatcgg
                     t"
                     /listShort="ykjA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    1261368..1261379
                     /Source="Nicolas_upshift_promotors"
                     /id="U1054"
                     /multdbtbs="-"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp="0.999000999001"
                     /psig="0.999000999001"
                     /xcortree=927
                     /SigmaFactorBS="gttcaggcgatatgcacgttcgcctagacactgaTGCATAGa
                     gggcctgccacgGGGCACAATAGGctcaatatgaccagcggatggaggtaaagatcgg
                     t"
                     /listShort="ykjA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        1261374
                     /Source="Nicolas_upshifts"
                     /id="U1054"
                     /multdbtbs="-"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp="0.999000999001"
                     /psig="0.999000999001"
                     /xcortree=927
                     /SigmaFactorBS="gttcaggcgatatgcacgttcgcctagacactgaTGCATAGa
                     gggcctgccacgGGGCACAATAGGctcaatatgaccagcggatggaggtaaagatcgg
                     t"
                     /listShort="ykjA"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             1261413..1262144
                     /gene="ykjA"
                     /locus_tag="BSU_13060"
                     /old_locus_tag="BSU13060"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved membrane protein of unknown function"
                     /protein_id="NP_389189.1"
                     /db_xref="EnsemblGenomes-Gn:BSU13060"
                     /db_xref="EnsemblGenomes-Tr:CAB13163"
                     /db_xref="GOA:P49853"
                     /db_xref="InterPro:IPR007353"
                     /db_xref="InterPro:IPR023090"
                     /db_xref="SubtiList:BG11419"
                     /db_xref="UniProtKB/Swiss-Prot:P49853"
                     /translation="MLWMVWVFLLKPVIVFSIAYILFRLAGKKAVSQMNNFDLLLTFA
                     IGTIISEPILTSKLPMSIYYAGAFLVLYLIMSKLSLSNKWRWLLVVSPTVLIRNGDID
                     ERGLRKERLTVNELLGKLREKGYADPADIDLAIIEETGEVSVIPKEEARAVQVRDLNM
                     EAERNFIPIPLILDGEILDHNLKYLQKNRSWLFEKLEEKGYSPKLLSSIILGTMNARG
                     DISLDLNTANEPQHDPYLYKPGNNN*"
                     /label="ykjA CDS"
     gene            1261413..1262144
                     /gene="ykjA"
                     /locus_tag="BSU_13060"
                     /old_locus_tag="BSU13060"
                     /label="ykjA gene"
     downshifts      1262122
                     /Source="Nicolas_upshifts"
                     /id="D712"
                     /incds=0
                     /nref=14
                     /ntot=29
                     /MaxReadThrough="2.84532"
                     /MaxDrop="4.44655"
                     /score="17.2468985"
                     /energy="-7.2"
                     /TU="U1053"
                     /idTUdmin="U1054"
                     /TUdmin=0
                     /isTUend="TRUE"
                     /label="downshifts"
     promotor_-35    1262183..1262191
                     /Source="Nicolas_upshift_promotors"
                     /id="U1055"
                     /multdbtbs="-"
                     /comp="M1"
                     /sig="SigH"
                     /pcomp="0.999000999001"
                     /psig="0.999000999001"
                     /xcortree=551
                     /SigmaFactorBS="ctctctcttgtaatgagagcttttttcttttttAAAGGGAAT
                     ttttgtttggTGTCAAATGTACCTAGTTAggaggggaactgaacatgaaggacttatc
                     c"
                     /listShort="ykkA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    1262202..1262220
                     /Source="Nicolas_upshift_promotors"
                     /id="U1055"
                     /multdbtbs="-"
                     /comp="M1"
                     /sig="SigH"
                     /pcomp="0.999000999001"
                     /psig="0.999000999001"
                     /xcortree=551
                     /SigmaFactorBS="ctctctcttgtaatgagagcttttttcttttttAAAGGGAAT
                     ttttgtttggTGTCAAATGTACCTAGTTAggaggggaactgaacatgaaggacttatc
                     c"
                     /listShort="ykkA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        1262210
                     /Source="Nicolas_upshifts"
                     /id="U1055"
                     /multdbtbs="-"
                     /comp="M1"
                     /sig="SigH"
                     /pcomp="0.999000999001"
                     /psig="0.999000999001"
                     /xcortree=551
                     /SigmaFactorBS="ctctctcttgtaatgagagcttttttcttttttAAAGGGAAT
                     ttttgtttggTGTCAAATGTACCTAGTTAggaggggaactgaacatgaaggacttatc
                     c"
                     /listShort="ykkA"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             1262236..1262763
                     /gene="ykkA"
                     /locus_tag="BSU_13070"
                     /old_locus_tag="BSU13070"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved hypothetical protein"
                     /protein_id="NP_389190.1"
                     /db_xref="EnsemblGenomes-Gn:BSU13070"
                     /db_xref="EnsemblGenomes-Tr:CAB13164"
                     /db_xref="InterPro:IPR024775"
                     /db_xref="InterPro:IPR034660"
                     /db_xref="SubtiList:BG11420"
                     /db_xref="UniProtKB/Swiss-Prot:P49854"
                     /translation="MKDLSIRNDMAPTVSLLYSAVEENSLRLASIVSHMTHSELYYKG
                     RCQTKNSTAQLLHHITNVDIRWVWRIKENRIPDHIEQAYGPMTDESGRLPEPVNQPDL
                     DELLKRHQHVVEKLKSVCFTLTENALNQPLSFEGDTATIRWGIWHMADHNRYHQAHIE
                     ALKKEWKQDVAKYER*"
                     /label="ykkA CDS"
     gene            1262236..1262763
                     /gene="ykkA"
                     /locus_tag="BSU_13070"
                     /old_locus_tag="BSU13070"
                     /label="ykkA gene"
     CDS             1262753..1263271
                     /gene="ykkB"
                     /locus_tag="BSU_13080"
                     /old_locus_tag="BSU13080"
                     /function="16.8: Protect"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 12793527; Product type
                     e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative N-acetyltransferase"
                     /protein_id="NP_389191.1"
                     /db_xref="EnsemblGenomes-Gn:BSU13080"
                     /db_xref="EnsemblGenomes-Tr:CAB13165"
                     /db_xref="GOA:P49855"
                     /db_xref="InterPro:IPR000182"
                     /db_xref="InterPro:IPR016181"
                     /db_xref="SubtiList:BG11421"
                     /db_xref="UniProtKB/Swiss-Prot:P49855"
                     /translation="MNAKTKLVTDRIRLRCMEDRDQATLFGLLFNDPDVMTYYSGLKD
                     KRQTREWVNWNQRNEKGYGVSLWIAEDKRTGEFLGQCGIVPQQIENQTVMEIGYMFAR
                     RHWGNGYAQEAARACLDYGFNERQFGKMAALIDPGNKASIRVAEKIGMHYSKTIRKWN
                     KPIAVYERKSYN*"
                     /label="ykkB CDS"
     gene            1262753..1263271
                     /gene="ykkB"
                     /locus_tag="BSU_13080"
                     /old_locus_tag="BSU13080"
                     /label="ykkB gene"
     promotor_-35    1263265..1263272
                     /Source="Nicolas_upshift_promotors"
                     /id="U1056"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.838161838161838"
                     /psig=1
                     /xcortree=3144
                     /SigmaFactorBS="gaataaaccgatcgcggtatatgaaagaaaatcttaCAATTG
                     AAagatagagctgagTTTAGTATCATGATATCATGtaaagttttctagggttccgcat
                     g"
                     /listShort="NA, ykkC, ykkD"
                     /listLong="purU"
                     /label="promotor_-35"
     promotor_-10    1263286..1263305
                     /Source="Nicolas_upshift_promotors"
                     /id="U1056"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.838161838161838"
                     /psig=1
                     /xcortree=3144
                     /SigmaFactorBS="gaataaaccgatcgcggtatatgaaagaaaatcttaCAATTG
                     AAagatagagctgagTTTAGTATCATGATATCATGtaaagttttctagggttccgcat
                     g"
                     /listShort="NA, ykkC, ykkD"
                     /listLong="purU"
                     /label="promotor_-10"
     upshifts        1263289
                     /Source="Nicolas_upshifts"
                     /id="U1056"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.838161838161838"
                     /psig=1
                     /xcortree=3144
                     /SigmaFactorBS="gaataaaccgatcgcggtatatgaaagaaaatcttaCAATTG
                     AAagatagagctgagTTTAGTATCATGATATCATGtaaagttttctagggttccgcat
                     g"
                     /listShort="NA, ykkC, ykkD"
                     /listLong="purU"
                     /label="upshifts"
     misc_RNA        1263304..1263415
                     /gene="gdwA"
                     /locus_tag="BSU_misc_RNA_16"
                     /product="guanidine-sensing riboswitch (binds free
                     guanidinium)"
                     /note="Evidence 2a: Function from experimental evidences
                     in other organisms; PubMedId: 17908319, 21317561,
                     27989440, 28001368, 28017522, 28107646, 28212758; Product
                     type n: RNA"
                     /label="gdwA RNA"
     gene            1263304..1263415
                     /gene="gdwA"
                     /locus_tag="BSU_misc_RNA_16"
                     /label="gdwA gene"
     downshifts      1263378
                     /Source="Nicolas_upshifts"
                     /id="D713"
                     /incds=0
                     /nref=205
                     /ntot=246
                     /MaxReadThrough="3.70824"
                     /MaxDrop="6.58389"
                     /score="30.3456563"
                     /energy="-18.5"
                     /TU="U1056"
                     /idTUdmin="U1056"
                     /TUdmin="-789"
                     /isTUend="FALSE"
                     /label="downshifts"
     CDS             1263493..1263831
                     /gene="gdnC"
                     /locus_tag="BSU_13090"
                     /old_locus_tag="BSU13090"
                     /function="16.1: Circulate"
                     /experiment="publication(s) with functional evidences,
                     PMID:10735877, 10931887, 15096624, 28001372"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 10735877, 10931887,
                     15096624, 28001372; Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="guanidinium efflux transporter subunit"
                     /protein_id="NP_389192.1"
                     /db_xref="EnsemblGenomes-Gn:BSU13090"
                     /db_xref="EnsemblGenomes-Tr:CAB13166"
                     /db_xref="GOA:P49856"
                     /db_xref="InterPro:IPR000390"
                     /db_xref="SubtiList:BG11422"
                     /db_xref="UniProtKB/Swiss-Prot:P49856"
                     /translation="MKWGLVVLAAVFEVVWVIGLKHADSALTWSGTAIGIIFSFYLLM
                     KATHSLPVGTVYAVFTGLGTAGTVLSEIVLFHEPVGWPKLLLIGVLLIGVIGLKLVTQ
                     DETEEKGGEA*"
                     /label="gdnC CDS"
     gene            1263493..1263831
                     /gene="gdnC"
                     /locus_tag="BSU_13090"
                     /old_locus_tag="BSU13090"
                     /label="gdnC gene"
     CDS             1263831..1264148
                     /gene="gdnD"
                     /locus_tag="BSU_13100"
                     /old_locus_tag="BSU13100"
                     /function="16.8: Protect"
                     /function="16.1: Circulate"
                     /experiment="publication(s) with functional evidences,
                     PMID:10735877, 10931887, 15096624, 28001372"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 10735877, 10931887,
                     15096624, 28001372; Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="guanidinium efflux transporter subunit"
                     /protein_id="NP_389193.1"
                     /db_xref="EnsemblGenomes-Gn:BSU13100"
                     /db_xref="EnsemblGenomes-Tr:CAB13167"
                     /db_xref="GOA:P49857"
                     /db_xref="InterPro:IPR000390"
                     /db_xref="SubtiList:BG11423"
                     /db_xref="UniProtKB/Swiss-Prot:P49857"
                     /translation="MLHWISLLCAGCLEMAGVALMNQYAKEKSVKWVLLIIVGFAASF
                     SLLSYAMETTPMGTAYAVWTGIGTAGGALIGILFYKEQKDAKRIFFIALILCSAVGLK
                     ILS*"
                     /label="gdnD CDS"
     gene            1263831..1264148
                     /gene="gdnD"
                     /locus_tag="BSU_13100"
                     /old_locus_tag="BSU13100"
                     /label="gdnD gene"
     promotor_-35    1264148..1264151
                     /Source="Nicolas_upshift_promotors"
                     /id="U1057"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.647352647352647"
                     /psig="0.998001998001998"
                     /xcortree=2582
                     /SigmaFactorBS="tcagcagttggtttaaaaattctgtcataAATTgatttttat
                     caaatcTTCAGTATAATGGATAAATAgtttagacttacaaagataagagggattattc
                     a"
                     /listShort="purU, NA, proB, proA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    1264167..1264186
                     /Source="Nicolas_upshift_promotors"
                     /id="U1057"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.647352647352647"
                     /psig="0.998001998001998"
                     /xcortree=2582
                     /SigmaFactorBS="tcagcagttggtttaaaaattctgtcataAATTgatttttat
                     caaatcTTCAGTATAATGGATAAATAgtttagacttacaaagataagagggattattc
                     a"
                     /listShort="purU, NA, proB, proA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        1264179
                     /Source="Nicolas_upshifts"
                     /id="U1057"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.647352647352647"
                     /psig="0.998001998001998"
                     /xcortree=2582
                     /SigmaFactorBS="tcagcagttggtttaaaaattctgtcataAATTgatttttat
                     caaatcTTCAGTATAATGGATAAATAgtttagacttacaaagataagagggattattc
                     a"
                     /listShort="purU, NA, proB, proA"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             1264219..1265121
                     /gene="purU"
                     /locus_tag="BSU_13110"
                     /old_locus_tag="BSU13110"
                     /EC_number="3.5.1.10"
                     /function="16.3: Control"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 2a: Function from experimental evidences
                     in other organisms; PubMedId: 8226647, 24108189; Product
                     type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="formyltetrahydrofolate hydrolase"
                     /protein_id="NP_389194.2"
                     /db_xref="EnsemblGenomes-Gn:BSU13110"
                     /db_xref="EnsemblGenomes-Tr:CAB13168"
                     /db_xref="GOA:O34990"
                     /db_xref="InterPro:IPR002376"
                     /db_xref="InterPro:IPR002912"
                     /db_xref="InterPro:IPR004810"
                     /db_xref="InterPro:IPR036477"
                     /db_xref="SubtiList:BG13237"
                     /db_xref="UniProtKB/Swiss-Prot:O34990"
                     /translation="MKSYMTQRLDEYRDGNEDKGRLLVSCPDQPGIVSAVSAFLFEHG
                     ANIIESNQYTTDPEGGRFFLRIEFDCAGIREKKSSLQAAFASVAEKFDMTWSLTLASE
                     LKRVAIFVSKELHCLHELIWEWQTGNLMAEIAVVISNHEEARELVERLNIPFHYMKAN
                     KDIRAEVEKKQLELLEQYDVDVIVLARYMQILTPDFVSAHPNRIINIHHSFLPAFIGA
                     NPYKRAYERGVKLIGATSHYVTNDLDEGPIIEQDIERVDHRDNAEALKNIGRTIERSV
                     LARAVKWHLEDRVIVHENKTIVFN*"
                     /label="purU CDS"
     gene            1264219..1265121
                     /gene="purU"
                     /locus_tag="BSU_13110"
                     /old_locus_tag="BSU13110"
                     /label="purU gene"
     downshifts      1265112
                     /Source="Nicolas_upshifts"
                     /id="D714"
                     /incds=0
                     /nref=91
                     /ntot=226
                     /MaxReadThrough="3.55628"
                     /MaxDrop="5.02155"
                     /score="16.8011006"
                     /energy="-13.1"
                     /TU="U1057"
                     /idTUdmin="U1056"
                     /TUdmin=945
                     /isTUend="FALSE"
                     /label="downshifts"
     promotor_-35    1265168..1265174
                     /Source="Nicolas_upshift_promotors"
                     /id="U1058"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.482517482517482"
                     /psig="0.998001998001998"
                     /xcortree=3136
                     /SigmaFactorBS="agactgcaagaggcccgcgcaatgcgggctatttttgatgac
                     aaaaaaCCTTGACaagtgtcttttttCTTTGCATAATATAAAAAAAtcattgagcgtt
                     g"
                     /listShort="NA, proB, proA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     upshifts        1265180
                     /Source="Nicolas_upshifts"
                     /id="U1058"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.482517482517482"
                     /psig="0.998001998001998"
                     /xcortree=3136
                     /SigmaFactorBS="agactgcaagaggcccgcgcaatgcgggctatttttgatgac
                     aaaaaaCCTTGACaagtgtcttttttCTTTGCATAATATAAAAAAAtcattgagcgtt
                     g"
                     /listShort="NA, proB, proA"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-10    1265188..1265207
                     /Source="Nicolas_upshift_promotors"
                     /id="U1058"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.482517482517482"
                     /psig="0.998001998001998"
                     /xcortree=3136
                     /SigmaFactorBS="agactgcaagaggcccgcgcaatgcgggctatttttgatgac
                     aaaaaaCCTTGACaagtgtcttttttCTTTGCATAATATAAAAAAAtcattgagcgtt
                     g"
                     /listShort="NA, proB, proA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     misc_RNA        1265209..1265419
                     /gene="pswB"
                     /locus_tag="BSU_misc_RNA_17"
                     /product="T-box riboswitch specific of proline tRNA"
                     /experiment="publication(s) with functional evidences,
                     PMID:11917026, 12749771, 19932103, 21233158"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 11917026, 12749771,
                     19932103, 21233158; Product type n: RNA"
                     /function="16.3: Control"
                     /label="pswB RNA"
     gene            1265209..1265419
                     /gene="pswB"
                     /locus_tag="BSU_misc_RNA_17"
                     /label="pswB gene"
     downshifts      1265377
                     /Source="Nicolas_upshifts"
                     /id="D715"
                     /incds=0
                     /nref=4
                     /ntot=52
                     /MaxReadThrough="6.91996"
                     /MaxDrop="3.8361"
                     /score="29.5878921"
                     /energy="-17.6"
                     /TU="U1057,U1058"
                     /idTUdmin="U1056"
                     /TUdmin=1210
                     /isTUend="FALSE"
                     /label="downshifts"
     CDS             1265472..1266569
                     /gene="proB"
                     /locus_tag="BSU_13120"
                     /old_locus_tag="BSU13120"
                     /EC_number="2.7.2.11"
                     /function="16.2: Construct biomass (Anabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:16958849, 8083159, 21233158, 21784929"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 16958849, 8083159,
                     21233158, 21784929; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate 5-kinase"
                     /protein_id="NP_389195.2"
                     /db_xref="EnsemblGenomes-Gn:BSU13120"
                     /db_xref="EnsemblGenomes-Tr:CAB13169"
                     /db_xref="GOA:P39820"
                     /db_xref="InterPro:IPR001048"
                     /db_xref="InterPro:IPR001057"
                     /db_xref="InterPro:IPR002478"
                     /db_xref="InterPro:IPR005715"
                     /db_xref="InterPro:IPR011529"
                     /db_xref="InterPro:IPR015947"
                     /db_xref="InterPro:IPR019797"
                     /db_xref="InterPro:IPR036393"
                     /db_xref="InterPro:IPR036974"
                     /db_xref="SubtiList:BG10963"
                     /db_xref="UniProtKB/Swiss-Prot:P39820"
                     /translation="MKKQRIVVKIGSSSLTNSKGSIDEAKIREHVQAISVLKKAGHEM
                     ILITSGAVAAGFSSLGYPSRPVTIKGKQAAAAVGQTLLMQQYMNQFKQYSLTPGQILL
                     TRNDFSKRERYRNAYATIMELLERGVIPIINENDSTSVEELTFGDNDMLSALVSGLIH
                     ADQLMILTDINGLYDANPNENPEAKRFDYLPEITPELLGYAGSAGSKVGTGGMKSKLL
                     ATQTALSLGVKVFIGTGSGEQKLADILDGRGDGTYIGDKELSSVNNTRQWIQFHSPIS
                     GEIIIDAGAEEAMIHNGSSLLPAGVVGVNGSFPKGAVVEVRGPGGVIGKGQTHYSSEE
                     IMEAKGKRSDELDFEKTFEVIHRNDWVNVKD*"
                     /label="proB CDS"
     gene            1265472..1266569
                     /gene="proB"
                     /locus_tag="BSU_13120"
                     /old_locus_tag="BSU13120"
                     /label="proB gene"
     promotor_-35    1265659..1265661
                     /Source="Nicolas_upshift_promotors"
                     /id="U1059"
                     /multdbtbs="-"
                     /comp="M20"
                     /sig="Sig-"
                     /pcomp="0.365634365634366"
                     /psig="0.206793206793207"
                     /xcortree=1776
                     /SigmaFactorBS="gattctgattacctcgggtgccgtagcggcggggttttccag
                     cctcggttatccatCCCgTCCCGttaccatcaaaggaaaacaggcggcggccgcggtc
                     g"
                     /listShort="proA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    1265663..1265667
                     /Source="Nicolas_upshift_promotors"
                     /id="U1059"
                     /multdbtbs="-"
                     /comp="M20"
                     /sig="Sig-"
                     /pcomp="0.365634365634366"
                     /psig="0.206793206793207"
                     /xcortree=1776
                     /SigmaFactorBS="gattctgattacctcgggtgccgtagcggcggggttttccag
                     cctcggttatccatCCCgTCCCGttaccatcaaaggaaaacaggcggcggccgcggtc
                     g"
                     /listShort="proA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        1265663
                     /Source="Nicolas_upshifts"
                     /id="U1059"
                     /multdbtbs="-"
                     /comp="M20"
                     /sig="Sig-"
                     /pcomp="0.365634365634366"
                     /psig="0.206793206793207"
                     /xcortree=1776
                     /SigmaFactorBS="gattctgattacctcgggtgccgtagcggcggggttttccag
                     cctcggttatccatCCCgTCCCGttaccatcaaaggaaaacaggcggcggccgcggtc
                     g"
                     /listShort="proA"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             1266581..1267828
                     /gene="proA"
                     /locus_tag="BSU_13130"
                     /old_locus_tag="BSU13130"
                     /EC_number="1.2.1.41"
                     /function="16.2: Construct biomass (Anabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:16958849, 8083159, 21784929, 22720735"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 16958849, 8083159,
                     21784929, 22720735; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="gamma-glutamyl phosphate reductase"
                     /protein_id="NP_389196.2"
                     /db_xref="EnsemblGenomes-Gn:BSU13130"
                     /db_xref="EnsemblGenomes-Tr:CAB13170"
                     /db_xref="GOA:P39821"
                     /db_xref="InterPro:IPR000965"
                     /db_xref="InterPro:IPR012134"
                     /db_xref="InterPro:IPR015590"
                     /db_xref="InterPro:IPR016161"
                     /db_xref="InterPro:IPR016162"
                     /db_xref="InterPro:IPR020593"
                     /db_xref="SubtiList:BG10964"
                     /db_xref="UniProtKB/Swiss-Prot:P39821"
                     /translation="MSEVSVKAKLAKEAAAEMIMKTTAEKDEALSLIANGLRKELDFL
                     LAENAKDIVNGKENGLTPDIIDRLSLDEKRIRDIADAVELLIDLADPIGDSLETIEKE
                     NGLFIEKIRVPLGVVGMIYEARPNVTVDAATLCLKTGNAVVLRGSSSAIHSNKALVSV
                     IYRALEQSALPIHAVQLIEDTSRETAKELFTLNDGLDVLIPRGGKKLIDLVVRESTVP
                     VLETGAGNCHIFIDETAKPQMAEKVVVNAKTQRPSVCNAIESLLIHKAWARQHGKELL
                     DQLENAGVEIRGDELVCELHPSSKQASKEDWETEFLAPVLSVKTVENVQEAVKHIQQY
                     GTNHSEAILTENDKNAVYFQTAVDAAAVYHNASTRFTDGFEFGYGAEIGISTQKLHAR
                     GPMGLPALTSTKYIIKGTGQIRE*"
                     /label="proA CDS"
     gene            1266581..1267828
                     /gene="proA"
                     /locus_tag="BSU_13130"
                     /old_locus_tag="BSU13130"
                     /label="proA gene"
     downshifts      1267819
                     /Source="Nicolas_upshifts"
                     /id="D716"
                     /incds=0
                     /nref=120
                     /ntot=228
                     /MaxReadThrough="4.1607"
                     /MaxDrop="6.017"
                     /score="11.118012"
                     /energy="-11"
                     /TU="U1058"
                     /idTUdmin="U1059"
                     /TUdmin=0
                     /isTUend="TRUE"
                     /label="downshifts"
     promotor_-35    1267890..1267897
                     /Source="Nicolas_upshift_promotors"
                     /id="U1060"
                     /multdbtbs="SigA"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.947052947052947"
                     /psig=1
                     /xcortree=3016
                     /SigmaFactorBS="ttacgagataagcttttttatacgcgaaaAATTGACAtttca
                     aatttaattGTGTACAATTTAATTGTATAaaatatattgggggaatgaaaaatgagtc
                     a"
                     /listShort="ohrA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    1267912..1267931
                     /Source="Nicolas_upshift_promotors"
                     /id="U1060"
                     /multdbtbs="SigA"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.947052947052947"
                     /psig=1
                     /xcortree=3016
                     /SigmaFactorBS="ttacgagataagcttttttatacgcgaaaAATTGACAtttca
                     aatttaattGTGTACAATTTAATTGTATAaaatatattgggggaatgaaaaatgagtc
                     a"
                     /listShort="ohrA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        1267921
                     /Source="Nicolas_upshifts"
                     /id="U1060"
                     /multdbtbs="SigA"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.947052947052947"
                     /psig=1
                     /xcortree=3016
                     /SigmaFactorBS="ttacgagataagcttttttatacgcgaaaAATTGACAtttca
                     aatttaattGTGTACAATTTAATTGTATAaaatatattgggggaatgaaaaatgagtc
                     a"
                     /listShort="ohrA"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             1267954..1268379
                     /gene="ohrA"
                     /locus_tag="BSU_13140"
                     /old_locus_tag="BSU13140"
                     /EC_number="1.11.1.15"
                     /function="16.6: Maintain"
                     /function="16.8: Protect"
                     /experiment="publication(s) with functional evidences,
                     PMID:11418552, 17502599, 21749987, 24184231"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 11418552, 17502599,
                     21749987, 24184231; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="peroxiredoxin"
                     /protein_id="NP_389197.1"
                     /db_xref="EnsemblGenomes-Gn:BSU13140"
                     /db_xref="EnsemblGenomes-Tr:CAB13171"
                     /db_xref="GOA:O34762"
                     /db_xref="InterPro:IPR003718"
                     /db_xref="InterPro:IPR015946"
                     /db_xref="InterPro:IPR019953"
                     /db_xref="InterPro:IPR036102"
                     /db_xref="SubtiList:BG13238"
                     /db_xref="UniProtKB/Swiss-Prot:O34762"
                     /translation="MSQPLFTATVSAVGGREGKVISSDRVLELDVAMPGTPRAKKLEK
                     ATNPEQLFAAGYAACFDSALQLVARTERVKVETEVTANVSLLKDEADQGYKLGVTLQV
                     KGEGVSASELEALVKKAHGVCPYSKATSGNIDVTLEVAE*"
                     /label="ohrA CDS"
     gene            1267954..1268379
                     /gene="ohrA"
                     /locus_tag="BSU_13140"
                     /old_locus_tag="BSU13140"
                     /label="ohrA gene"
     downshifts      1268368
                     /Source="Nicolas_upshifts"
                     /id="D717"
                     /incds=0
                     /nref=57
                     /ntot=174
                     /MaxReadThrough="0.0429100000000009"
                     /MaxDrop="3.90314"
                     /score="30.9245751"
                     /energy="-16.6"
                     /TU="NA"
                     /idTUdmin="U1060"
                     /TUdmin="-1"
                     /isTUend="TRUE"
                     /label="downshifts"
     CDS             complement(1268410..1268853)
                     /gene="ohrR"
                     /locus_tag="BSU_13150"
                     /old_locus_tag="BSU13150"
                     /function="16.3: Control"
                     /experiment="publication(s) with functional evidences,
                     PMID:11983871, 17502599, 18363800, 20094649, 21749987,
                     24184231"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 11983871, 17502599,
                     18363800, 20094649, 21749987, 24184231; Product type r :
                     regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator sensing organic
                     peroxides"
                     /protein_id="NP_389198.1"
                     /db_xref="EnsemblGenomes-Gn:BSU13150"
                     /db_xref="EnsemblGenomes-Tr:CAB13172"
                     /db_xref="GOA:O34777"
                     /db_xref="InterPro:IPR000835"
                     /db_xref="InterPro:IPR036388"
                     /db_xref="InterPro:IPR036390"
                     /db_xref="PDB:1Z91"
                     /db_xref="PDB:1Z9C"
                     /db_xref="SubtiList:BG13239"
                     /db_xref="UniProtKB/Swiss-Prot:O34777"
                     /translation="MENKFDHMKLENQLCFLLYASSREMTKQYKPLLDKLNITYPQYL
                     ALLLLWEHETLTVKKMGEQLYLDSGTLTPMLKRMEQQGLITRKRSEEDERSVLISLTE
                     DGALLKEKAVDIPGTILGLSKQSGEDLKQLKSALYTLLETLHQKN*"
                     /label="ohrR CDS"
     gene            complement(1268410..1268853)
                     /gene="ohrR"
                     /locus_tag="BSU_13150"
                     /old_locus_tag="BSU13150"
                     /label="ohrR gene"
     downshifts      complement(1268444)
                     /Source="Nicolas_upshifts"
                     /id="D718"
                     /incds=0
                     /nref=105
                     /ntot=232
                     /MaxReadThrough="-0.17111"
                     /MaxDrop="4.73026"
                     /score="34.7008532"
                     /energy="-16.6"
                     /TU="NA"
                     /idTUdmin="U1061"
                     /TUdmin=1
                     /isTUend="TRUE"
                     /label="downshifts"
     promotor_-10    complement(1268880..1268899)
                     /Source="Nicolas_upshift_promotors"
                     /id="U1061"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.672327672327672"
                     /psig=1
                     /xcortree=2020
                     /SigmaFactorBS="tctttttaaacatgctatgtttgccgagaATAGgaaaagtga
                     ggtttTTCAGATACAATAGAATCGAatgacaaaaaagagttggtgaacaaaatggaaa
                     a"
                     /listShort="ohrR"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(1268886)
                     /Source="Nicolas_upshifts"
                     /id="U1061"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.672327672327672"
                     /psig=1
                     /xcortree=2020
                     /SigmaFactorBS="tctttttaaacatgctatgtttgccgagaATAGgaaaagtga
                     ggtttTTCAGATACAATAGAATCGAatgacaaaaaagagttggtgaacaaaatggaaa
                     a"
                     /listShort="ohrR"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(1268914..1268917)
                     /Source="Nicolas_upshift_promotors"
                     /id="U1061"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.672327672327672"
                     /psig=1
                     /xcortree=2020
                     /SigmaFactorBS="tctttttaaacatgctatgtttgccgagaATAGgaaaagtga
                     ggtttTTCAGATACAATAGAATCGAatgacaaaaaagagttggtgaacaaaatggaaa
                     a"
                     /listShort="ohrR"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-35    1268935..1268941
                     /Source="Nicolas_upshift_promotors"
                     /id="U1062"
                     /multdbtbs="SigB"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp=1
                     /psig=1
                     /xcortree=232
                     /SigmaFactorBS="aacctcacttttcctattctcggcaaacatagcaTGTTTAAa
                     aagatcagaaagGGAAATATAACAACTAGATacaaataaggaggttgggaaatatggc
                     a"
                     /listShort="ohrB, ykzN, S468"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    1268955..1268973
                     /Source="Nicolas_upshift_promotors"
                     /id="U1062"
                     /multdbtbs="SigB"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp=1
                     /psig=1
                     /xcortree=232
                     /SigmaFactorBS="aacctcacttttcctattctcggcaaacatagcaTGTTTAAa
                     aagatcagaaagGGAAATATAACAACTAGATacaaataaggaggttgggaaatatggc
                     a"
                     /listShort="ohrB, ykzN, S468"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        1268961
                     /Source="Nicolas_upshifts"
                     /id="U1062"
                     /multdbtbs="SigB"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp=1
                     /psig=1
                     /xcortree=232
                     /SigmaFactorBS="aacctcacttttcctattctcggcaaacatagcaTGTTTAAa
                     aagatcagaaagGGAAATATAACAACTAGATacaaataaggaggttgggaaatatggc
                     a"
                     /listShort="ohrB, ykzN, S468"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             1268996..1269406
                     /gene="ohrB"
                     /locus_tag="BSU_13160"
                     /old_locus_tag="BSU13160"
                     /EC_number="1.11.1.15"
                     /function="16.6: Maintain"
                     /function="16.8: Protect"
                     /experiment="publication(s) with functional evidences,
                     PMID:9696771, 11418552, 18084074"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 9696771, 11418552,
                     18084074; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="organic hydroperoxide resistance reductase B"
                     /protein_id="NP_389199.1"
                     /db_xref="EnsemblGenomes-Gn:BSU13160"
                     /db_xref="EnsemblGenomes-Tr:CAB13173"
                     /db_xref="GOA:P80242"
                     /db_xref="InterPro:IPR003718"
                     /db_xref="InterPro:IPR015946"
                     /db_xref="InterPro:IPR019953"
                     /db_xref="InterPro:IPR036102"
                     /db_xref="PDB:2BJO"
                     /db_xref="SubtiList:BG19021"
                     /db_xref="UniProtKB/Swiss-Prot:P80242"
                     /translation="MALFTAKVTARGGRAGHITSDDGVLDFDIVMPNAKKEGQTGTNP
                     EQLFAAGYAACFGGALEHVAKEQNIEIDSEIEGQVSLMKDESDGGFKIGVTLVVNTKD
                     LDREKAQELVNAAHEFCPYSKATRGNVDVKLELK*"
                     /label="ohrB CDS"
     gene            1268996..1269406
                     /gene="ohrB"
                     /locus_tag="BSU_13160"
                     /old_locus_tag="BSU13160"
                     /label="ohrB gene"
     downshifts      1269384
                     /Source="Nicolas_upshifts"
                     /id="D719"
                     /incds=0
                     /nref=7
                     /ntot=145
                     /MaxReadThrough="8.17185"
                     /MaxDrop="4.0663"
                     /score="17.6512157"
                     /energy="-12.1"
                     /TU="U1062"
                     /idTUdmin="U1062"
                     /TUdmin="-855"
                     /isTUend="FALSE"
                     /label="downshifts"
     CDS             1269433..1269603
                     /gene="ykzN"
                     /locus_tag="BSU_13169"
                     /old_locus_tag="BSU13169"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 5: Unknown function"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_003097717.1"
                     /db_xref="EnsemblGenomes-Gn:BSU13169"
                     /db_xref="EnsemblGenomes-Tr:CAX52607"
                     /db_xref="UniProtKB/Swiss-Prot:C0H400"
                     /translation="MFFGVGHAGRAQIYDKTSEKRLKHAFKPKVTDEAGGWHGVCRAE
                     LRVYAVLYLHRA*"
                     /label="ykzN CDS"
     gene            1269433..1269603
                     /gene="ykzN"
                     /locus_tag="BSU_13169"
                     /old_locus_tag="BSU13169"
                     /label="ykzN gene"
     S_feature       1269604..1270281
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1382628_1383305"
                     /HighExp="Etha, Salt, M9-stat, Sw, B60, LPhT, B36, Heat,
                     Gly, BC"
                     /AntisenseName="guaD"
                     /AntisenseCor="-5.7732597431508298E-2"
                     /AntisenseRegPval="-0.5"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigB"
                     /TUshortPSig=1
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S468"
     CDS             complement(1269653..1270123)
                     /gene="guaN"
                     /locus_tag="BSU_13170"
                     /old_locus_tag="BSU13170"
                     /EC_number="3.5.4.3"
                     /function="16.11: Scavenge (Catabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:11101664, 15180998"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 11101664, 15180998;
                     Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="guanine deaminase"
                     /protein_id="NP_389200.1"
                     /db_xref="EnsemblGenomes-Gn:BSU13170"
                     /db_xref="EnsemblGenomes-Tr:CAB13174"
                     /db_xref="GOA:O34598"
                     /db_xref="InterPro:IPR002125"
                     /db_xref="InterPro:IPR016192"
                     /db_xref="InterPro:IPR016193"
                     /db_xref="PDB:1TIY"
                     /db_xref="PDB:1WKQ"
                     /db_xref="SubtiList:BG13240"
                     /db_xref="UniProtKB/Swiss-Prot:O34598"
                     /translation="MNHETFLKRAVTLACEGVNAGIGGPFGAVIVKDGAIIAEGQNNV
                     TTSNDPTAHAEVTAIRKACKVLGAYQLDDCILYTSCEPCPMCLGAIYWARPKAVFYAA
                     EHTDAAEAGFDDSFIYKEIDKPAEERTIPFYQVTLTEHLSPFQAWRNFANKKEY*"
                     /label="guaN CDS"
     gene            complement(1269653..1270123)
                     /gene="guaN"
                     /locus_tag="BSU_13170"
                     /old_locus_tag="BSU13170"
                     /label="guaN gene"
     downshifts      complement(1269677)
                     /Source="Nicolas_upshifts"
                     /id="D720"
                     /incds=0
                     /nref=25
                     /ntot=112
                     /MaxReadThrough="0.698199999999999"
                     /MaxDrop="4.30578"
                     /score="-6.41557266"
                     /energy="-13.5"
                     /TU="NA"
                     /idTUdmin="U1063"
                     /TUdmin=0
                     /isTUend="TRUE"
                     /label="downshifts"
     promotor_-10    complement(1270145..1270164)
                     /Source="Nicolas_upshift_promotors"
                     /id="U1063"
                     /multdbtbs="SigA"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.434565434565435"
                     /psig="0.933066933066933"
                     /xcortree=790
                     /SigmaFactorBS="atcccccaaatactttgtttattttgcacttttttaagAATG
                     ttctttgcattctttTCGGCTATACTAATAACACTctattgacaggagggattgggat
                     g"
                     /listShort="guaD"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(1270161)
                     /Source="Nicolas_upshifts"
                     /id="U1063"
                     /multdbtbs="SigA"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.434565434565435"
                     /psig="0.933066933066933"
                     /xcortree=790
                     /SigmaFactorBS="atcccccaaatactttgtttattttgcacttttttaagAATG
                     ttctttgcattctttTCGGCTATACTAATAACACTctattgacaggagggattgggat
                     g"
                     /listShort="guaD"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     S_feature       complement(1270163..1270270)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1383187_1383294_c"
                     /HighExp="BMM, MG 10, MG 15, MG 5, MG t5, GM 25, B36, Gly,
                     B60, GM 90"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="Sig-, SigA"
                     /TUshortPSig="0.044, 1"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S469"
     promotor_-35    complement(1270180..1270183)
                     /Source="Nicolas_upshift_promotors"
                     /id="U1063"
                     /multdbtbs="SigA"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.434565434565435"
                     /psig="0.933066933066933"
                     /xcortree=790
                     /SigmaFactorBS="atcccccaaatactttgtttattttgcacttttttaagAATG
                     ttctttgcattctttTCGGCTATACTAATAACACTctattgacaggagggattgggat
                     g"
                     /listShort="guaD"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     downshifts      1270239
                     /Source="Nicolas_upshifts"
                     /id="D721"
                     /incds=0
                     /nref=9
                     /ntot=34
                     /MaxReadThrough="0.95942"
                     /MaxDrop="5.95076"
                     /score="15.2916843"
                     /energy="-11.5"
                     /TU="NA"
                     /idTUdmin="U1062"
                     /TUdmin=0
                     /isTUend="TRUE"
                     /label="downshifts"
     CDS             complement(1270296..1272584)
                     /gene="metE"
                     /locus_tag="BSU_13180"
                     /old_locus_tag="BSU13180"
                     /EC_number="2.1.1.14"
                     /function="16.2: Construct biomass (Anabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:8755891, 10094622, 12910260, 16086852, 16194229,
                     17012790, 17611193, 21749987, 22938038, 24313874"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 8755891, 10094622,
                     12910260, 16086852, 16194229, 17012790, 17611193,
                     21749987, 22938038, 24313874; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="cobalamin-independent methionine synthase"
                     /protein_id="NP_389201.2"
                     /db_xref="EnsemblGenomes-Gn:BSU13180"
                     /db_xref="EnsemblGenomes-Tr:CAB13175"
                     /db_xref="GOA:P80877"
                     /db_xref="InterPro:IPR002629"
                     /db_xref="InterPro:IPR006276"
                     /db_xref="InterPro:IPR013215"
                     /db_xref="SubtiList:BG12616"
                     /db_xref="UniProtKB/Swiss-Prot:P80877"
                     /translation="MTTIKTSNLGFPRIGLNREWKKALEAYWKGSTDKDTFLKQIDEL
                     FLSAVKTQIDQQIDVVPVSDFTQYDHVLDTAVSFNWIPKRFRHLTDATDTYFAIARGI
                     KDAVSSEMTKWFNTNYHYIVPEYDESIEFRLTRNKQLEDYRRIKQEYGVETKPVIVGP
                     YTFVTLAKGYEPSEAKAIQKRLVPLYVQLLKELEEEGVKWVQIDEPALVTASSEDVRG
                     AKELFESITSELSSLNVLLQTYFDSVDAYEELISYPVQGIGLDFVHDKGRNLEQLKTH
                     GFPTDKVLAAGVIDGRNIWKADLEERLDAVLDILSIAKVDELWIQPSSSLLHVPVAKH
                     PDEHLEKDLLNGLSYAKEKLAELTALKEGLVSGKAAISEEIQQAKADIQALKQFATGA
                     NSEQKKELEQLTDKDFKRPIPFEERLALQNESLGLPLLPTTTIGSFPQSAEVRSARQK
                     WRKAEWSDEQYQNFINAETKRWIDIQEELELDVLVHGEFERTDMVEYFGEKLAGFAFT
                     KYAWVQSYGSRCVRPPVIYGDVEFIEPMTVKDTVYAQSLTSKHVKGMLTGPVTILNWS
                     FPRNDISRKEIAFQIGLALRKEVKALEDAGIQIIQVDEPALREGLPLKTRDWDEYLTW
                     AAEAFRLTTSSVKNETQIHTHMCYSNFEDIVDTINDLDADVITIEHSRSHGGFLDYLK
                     NHPYLKGLGLGVYDIHSPRVPSTEEMYNIIVDALAVCPTDRFWVNPDCGLKTRQQEET
                     VAALKNMVEAAKQARAQQTQLV*"
                     /label="metE CDS"
     gene            complement(1270296..1272584)
                     /gene="metE"
                     /locus_tag="BSU_13180"
                     /old_locus_tag="BSU13180"
                     /label="metE gene"
     downshifts      complement(1270315)
                     /Source="Nicolas_upshifts"
                     /id="D722"
                     /incds=0
                     /nref=212
                     /ntot=239
                     /MaxReadThrough="5.25958"
                     /MaxDrop="7.50935"
                     /score="29.3354648"
                     /energy="-11.5"
                     /TU="U1064,U1065"
                     /idTUdmin="U1063"
                     /TUdmin="-638"
                     /isTUend="FALSE"
                     /label="downshifts"
     S_feature       complement(1272585..1272647)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1385609_1385671_c"
                     /HighExp="MG 15, MG 5, MG t5, BMM, T-1.40H, MG 25, MG 10,
                     GM 25, Mal, Etha"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="Sig-, SigA, SigA"
                     /TUshortPSig="0.044, 1, 0.587"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S470"
     promotor_no_box complement(1272607..1272707)
                     /Source="Nicolas_upshift_promotors"
                     /id="U1064"
                     /multdbtbs="-"
                     /comp="M21"
                     /sig="Sig-"
                     /pcomp="0.332667332667333"
                     /psig="0.043956043956044"
                     /xcortree=3023
                     /SigmaFactorBS="agtgttttacgtagaaaagcctctttctctcatgggaaagag
                     gctttttgttgtgagaaaacctcttagcagcctgtatccgcgggtgaaagagagtgtt
                     t"
                     /listShort="S470, metE, S469, guaD"
                     /GFF_Attribute="listLong"
                     /label="promotor_no_box"
     upshifts        complement(1272647)
                     /Source="Nicolas_upshifts"
                     /id="U1064"
                     /multdbtbs="-"
                     /comp="M21"
                     /sig="Sig-"
                     /pcomp="0.332667332667333"
                     /psig="0.043956043956044"
                     /xcortree=3023
                     /SigmaFactorBS="agtgttttacgtagaaaagcctctttctctcatgggaaagag
                     gctttttgttgtgagaaaacctcttagcagcctgtatccgcgggtgaaagagagtgtt
                     t"
                     /listShort="S470, metE, S469, guaD"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     misc_RNA        complement(1272712..1272867)
                     /gene="mswB"
                     /locus_tag="BSU_misc_RNA_18"
                     /product="S-adenosylmethionine riboswitch"
                     /experiment="publication(s) with functional evidences,
                     PMID:10094622, 12626738, 12910260, 17381305, 18039762,
                     22543867"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 10094622, 12626738,
                     12910260, 17381305, 18039762, 22543867; Product type n :
                     RNA"
                     /function="16.3: Control"
                     /label="mswB RNA"
     gene            complement(1272712..1272867)
                     /gene="mswB"
                     /locus_tag="BSU_misc_RNA_18"
                     /label="mswB gene"
     downshifts      complement(1272713)
                     /Source="Nicolas_upshifts"
                     /id="D723"
                     /incds=0
                     /nref=55
                     /ntot=106
                     /MaxReadThrough="8.12248"
                     /MaxDrop="6.4813"
                     /score="24.0596293"
                     /energy="-16.2"
                     /TU="U1065,U1066"
                     /idTUdmin="U1066"
                     /TUdmin="-308"
                     /isTUend="FALSE"
                     /label="downshifts"
     promotor_-10    complement(1272900..1272919)
                     /Source="Nicolas_upshift_promotors"
                     /id="U1065"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.992007992007992"
                     /psig=1
                     /xcortree=2888
                     /SigmaFactorBS="acatcatgtaaataaaaatttcaaattctaTGTTGACAatga
                     atttgaattacTGTTAAGATTACCAACAAATgattcaacttttcaaaaaattaataac
                     a"
                     /listShort="NA, S470, metE, S469, guaD"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(1272912)
                     /Source="Nicolas_upshifts"
                     /id="U1065"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.992007992007992"
                     /psig=1
                     /xcortree=2888
                     /SigmaFactorBS="acatcatgtaaataaaaatttcaaattctaTGTTGACAatga
                     atttgaattacTGTTAAGATTACCAACAAATgattcaacttttcaaaaaattaataac
                     a"
                     /listShort="NA, S470, metE, S469, guaD"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     S_feature       complement(1272914..1272999)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1385938_1386023_c"
                     /HighExp="BT, BC, B36, M9-stat, T5.0H, S3, S6, T4.0H, S5,
                     T0.30H"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.587"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S471"
     promotor_-35    complement(1272935..1272942)
                     /Source="Nicolas_upshift_promotors"
                     /id="U1065"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.992007992007992"
                     /psig=1
                     /xcortree=2888
                     /SigmaFactorBS="acatcatgtaaataaaaatttcaaattctaTGTTGACAatga
                     atttgaattacTGTTAAGATTACCAACAAATgattcaacttttcaaaaaattaataac
                     a"
                     /listShort="NA, S470, metE, S469, guaD"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             complement(1273000..1273959)
                     /gene="ispA"
                     /locus_tag="BSU_13190"
                     /old_locus_tag="BSU13190"
                     /EC_number="3.4.21.-"
                     /function="16.6: Maintain"
                     /function="16.11: Scavenge (Catabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:3087947, 14680823, 23569278"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 3087947, 14680823,
                     23569278; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="intracellular serine protease"
                     /protein_id="NP_389202.1"
                     /db_xref="EnsemblGenomes-Gn:BSU13190"
                     /db_xref="EnsemblGenomes-Tr:CAB13176"
                     /db_xref="GOA:P11018"
                     /db_xref="InterPro:IPR000209"
                     /db_xref="InterPro:IPR015500"
                     /db_xref="InterPro:IPR022398"
                     /db_xref="InterPro:IPR023827"
                     /db_xref="InterPro:IPR023828"
                     /db_xref="InterPro:IPR034202"
                     /db_xref="InterPro:IPR036852"
                     /db_xref="SubtiList:BG10674"
                     /db_xref="UniProtKB/Swiss-Prot:P11018"
                     /translation="MNGEIRLIPYVTNEQIMDVNELPEGIKVIKAPEMWAKGVKGKNI
                     KVAVLDTGCDTSHPDLKNQIIGGKNFTDDDGGKEDAISDYNGHGTHVAGTIAANDSNG
                     GIAGVAPEASLLIVKVLGGENGSGQYEWIINGINYAVEQKVDIISMSLGGPSDVPELK
                     EAVKNAVKNGVLVVCAAGNEGDGDERTEELSYPAAYNEVIAVGSVSVARELSEFSNAN
                     KEIDLVAPGENILSTLPNKKYGKLTGTSMAAPHVSGALALIKSYEEESFQRKLSESEV
                     FAQLIRRTLPLDIAKTLAGNGFLYLTAPDELAEKAEQSHLLTL*"
                     /label="ispA CDS"
     gene            complement(1273000..1273959)
                     /gene="ispA"
                     /locus_tag="BSU_13190"
                     /old_locus_tag="BSU13190"
                     /label="ispA gene"
     S_feature       complement(1273960..1274011)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1386984_1387035_c"
                     /HighExp="BT, B36, BC, T5.0H, M9-stat, T0.30H, T3.30H,
                     T3.0H, T4.0H, S6"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.587"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S472"
     promotor_-10    complement(1274004..1274023)
                     /Source="Nicolas_upshift_promotors"
                     /id="U1066"
                     /multdbtbs="SigA"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.358641358641359"
                     /psig="0.587412587412587"
                     /xcortree=465
                     /SigmaFactorBS="tgtatcctattttttcaaaatgcttcaaatggcTCTGTCCga
                     gcgcttgctttTTTCATATAATATGAGGCAAcacccttgaatccacttgcaagcataa
                     a"
                     /listShort="S472, ispA, S471, NA, S470, metE"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(1274016)
                     /Source="Nicolas_upshifts"
                     /id="U1066"
                     /multdbtbs="SigA"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.358641358641359"
                     /psig="0.587412587412587"
                     /xcortree=465
                     /SigmaFactorBS="tgtatcctattttttcaaaatgcttcaaatggcTCTGTCCga
                     gcgcttgctttTTTCATATAATATGAGGCAAcacccttgaatccacttgcaagcataa
                     a"
                     /listShort="S472, ispA, S471, NA, S470, metE"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(1274037..1274043)
                     /Source="Nicolas_upshift_promotors"
                     /id="U1066"
                     /multdbtbs="SigA"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.358641358641359"
                     /psig="0.587412587412587"
                     /xcortree=465
                     /SigmaFactorBS="tgtatcctattttttcaaaatgcttcaaatggcTCTGTCCga
                     gcgcttgctttTTTCATATAATATGAGGCAAcacccttgaatccacttgcaagcataa
                     a"
                     /listShort="S472, ispA, S471, NA, S470, metE"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-35    1274128..1274131
                     /Source="Nicolas_upshift_promotors"
                     /id="U1067"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.3996003996004"
                     /psig=1
                     /xcortree=2359
                     /SigmaFactorBS="gaattagtaatcttcaaaatattggatggcttcaacatgtat
                     gaCTGGgattcaactgtaagtCAAGTTATAATAGTGTTGGGgaaaggagcagtgtcat
                     g"
                     /listShort="rsbRB"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     upshifts        1274144
                     /Source="Nicolas_upshifts"
                     /id="U1067"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.3996003996004"
                     /psig=1
                     /xcortree=2359
                     /SigmaFactorBS="gaattagtaatcttcaaaatattggatggcttcaacatgtat
                     gaCTGGgattcaactgtaagtCAAGTTATAATAGTGTTGGGgaaaggagcagtgtcat
                     g"
                     /listShort="rsbRB"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-10    1274147..1274166
                     /Source="Nicolas_upshift_promotors"
                     /id="U1067"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.3996003996004"
                     /psig=1
                     /xcortree=2359
                     /SigmaFactorBS="gaattagtaatcttcaaaatattggatggcttcaacatgtat
                     gaCTGGgattcaactgtaagtCAAGTTATAATAGTGTTGGGgaaaggagcagtgtcat
                     g"
                     /listShort="rsbRB"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     CDS             1274182..1275015
                     /gene="rsbRB"
                     /locus_tag="BSU_13200"
                     /old_locus_tag="BSU13200"
                     /function="16.8: Protect"
                     /function="16.3: Control"
                     /experiment="publication(s) with functional evidences,
                     PMID:15312768, 15583165, 17158665"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 15312768, 15583165,
                     17158665; Product type f: factor"
                     /codon_start=1
                     /transl_table=11
                     /product="component of the anxiosome (stressosome)"
                     /protein_id="NP_389203.1"
                     /db_xref="EnsemblGenomes-Gn:BSU13200"
                     /db_xref="EnsemblGenomes-Tr:CAB13177"
                     /db_xref="InterPro:IPR002645"
                     /db_xref="InterPro:IPR036513"
                     /db_xref="SubtiList:BG12609"
                     /db_xref="UniProtKB/Swiss-Prot:O34860"
                     /translation="MKLNEKLYAFFSEHVEQMAEEWIETMEESDPNSLYALHNATVTE
                     ELKEQDREFYRHLNYMYVLPEKQFLEEFQEWVIELTNDQKHLDTPVQYVIREFMRNRR
                     LYTKYFEKFAEENESAFEPGEKQKWADLIVKVFDFTIYTFVDHAEMNAKQQLNAQREM
                     ILELSSPVITLSKSTALLPLVGDIDTERAKFILENTLQACAKRRVEHLLIDLSGVVVV
                     DTMVAHQIFKLIEALNLIGVRSTLSGIRPEIAQTAVQLGIDFSNITIKTNLAQALNYH
                     Q*"
                     /label="rsbRB CDS"
     gene            1274182..1275015
                     /gene="rsbRB"
                     /locus_tag="BSU_13200"
                     /old_locus_tag="BSU13200"
                     /label="rsbRB gene"
     downshifts      1274991
                     /Source="Nicolas_upshifts"
                     /id="D724"
                     /incds=0
                     /nref=219
                     /ntot=254
                     /MaxReadThrough="3.01586"
                     /MaxDrop="6.07238"
                     /score="22.2655638"
                     /energy="-12.1"
                     /TU="NA"
                     /idTUdmin="U1067"
                     /TUdmin=0
                     /isTUend="TRUE"
                     /label="downshifts"
     CDS             complement(1275046..1275810)
                     /gene="thiX"
                     /locus_tag="BSU_13210"
                     /old_locus_tag="BSU13210"
                     /function="16.1: Circulate"
                     /experiment="publication(s) with functional evidences,
                     PMID:15849754, 16291685, 16356850, 16850406, 18931129"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 15849754, 16291685,
                     16356850, 16850406, 18931129; Product type t :
                     transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine transporter, transmembrane T component"
                     /protein_id="NP_389204.1"
                     /db_xref="EnsemblGenomes-Gn:BSU13210"
                     /db_xref="EnsemblGenomes-Tr:CAB13178"
                     /db_xref="GOA:O34572"
                     /db_xref="InterPro:IPR003339"
                     /db_xref="SubtiList:BG13248"
                     /db_xref="UniProtKB/Swiss-Prot:O34572"
                     /translation="MKQPLHLINPTVKAAAVFCCVVMLSFIYNPYTPACFYIIIVAGV
                     LLAAGIPLKKWLLFTIPFLILAFGCVWTAAVFGKVPTTPDNFLFQAGPISINSDNVSV
                     GISLGFRILCFSALSMMFVFTTDPILFMLSLVQQCRLSPKLAYGVIAGFRFLPLLKDE
                     VQLIQQAHKIRGGAAESGIINKISALKRYTIPLLASAIRKAERTALAMESKGFTGSRN
                     RTYYRTLSVNRRDWVFFCLVLLLFAGSFLVSLCFAS*"
                     /label="thiX CDS"
     gene            complement(1275046..1275810)
                     /gene="thiX"
                     /locus_tag="BSU_13210"
                     /old_locus_tag="BSU13210"
                     /label="thiX gene"
     downshifts      complement(1275067)
                     /Source="Nicolas_upshifts"
                     /id="D725"
                     /incds=0
                     /nref=143
                     /ntot=164
                     /MaxReadThrough="0.824010000000001"
                     /MaxDrop="6.67697"
                     /score="34.7739353"
                     /energy="-12.1"
                     /TU="NA"
                     /idTUdmin="U1069"
                     /TUdmin=0
                     /isTUend="TRUE"
                     /label="downshifts"
     CDS             complement(1275785..1277428)
                     /gene="thiW"
                     /locus_tag="BSU_13220"
                     /old_locus_tag="BSU13220"
                     /function="16.1: Circulate"
                     /experiment="publication(s) with functional evidences,
                     PMID:15849754, 16291685, 16356850, 16850406, 18931129"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 15849754, 16291685,
                     16356850, 16850406, 18931129; Product type t :
                     transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine ABC transporter (ATP-binding subunit)"
                     /protein_id="NP_389205.2"
                     /db_xref="EnsemblGenomes-Gn:BSU13220"
                     /db_xref="EnsemblGenomes-Tr:CAB13179"
                     /db_xref="GOA:O34362"
                     /db_xref="InterPro:IPR003439"
                     /db_xref="InterPro:IPR003593"
                     /db_xref="InterPro:IPR017871"
                     /db_xref="InterPro:IPR027417"
                     /db_xref="SubtiList:BG13249"
                     /db_xref="UniProtKB/Swiss-Prot:O34362"
                     /translation="MQAFDELLTVEQLSFSYEEDEKPVFQDISFELQKGECVLLLGPS
                     GCGKSSLALCLNGLYPEACDGIQSGHVFLFQKPVTDAETSETITQHAGVVFQDPDQQF
                     CMLTVEDEIAFGLENLQIPKEEMTEKINAVLEKLRITHLKEKMISTLSGGQKQKVALA
                     CILAMEPELIILDEPTSLLDPFSAREFVHLMKDLQREKGFSLLVIEHQLDEWAPWIER
                     TIVLDKSGKKALDGLTKNLFQHEAETLKKLGIAIPKVCHLQEKLSMPFTLSKEMLFKE
                     PIPAGHVKKKKAPSGESVLEVSSLSFARGQQAIFKDISFSLREGSLTALVGPNGTGKS
                     TLLSVLASLMKPQSGKILLYDQPLQKYKEKELRKRMGFVFQNPEHQFVTDTVYDELLF
                     GQKANAETEKKAQHLLQRFGLAHLADHHPFAISQGQKRRLSVATMLMHDVKVLLLDEP
                     TFGQDARTAAECMEMIQRIKAEGTAVLMITHDMELVSSYADSVLVLHDTGLAFDGSPA
                     QLFSQETGLVQKAKLTLPLLYEWMAFQEEVRDEATVTSH*"
                     /label="thiW CDS"
     gene            complement(1275785..1277428)
                     /gene="thiW"
                     /locus_tag="BSU_13220"
                     /old_locus_tag="BSU13220"
                     /label="thiW gene"
     CDS             complement(1277415..1278014)
                     /gene="thiV"
                     /locus_tag="BSU_13230"
                     /old_locus_tag="BSU13230"
                     /function="16.1: Circulate"
                     /experiment="publication(s) with functional evidences,
                     PMID:15849754, 16291685, 16356850, 16850406, 27447050,
                     22720735"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 15849754, 16291685,
                     16356850, 16850406, 27447050, 22720735; Product type t :
                     transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine transporter, permease component"
                     /protein_id="NP_389206.2"
                     /db_xref="EnsemblGenomes-Gn:BSU13230"
                     /db_xref="EnsemblGenomes-Tr:CAB13180"
                     /db_xref="GOA:O34738"
                     /db_xref="InterPro:IPR017195"
                     /db_xref="PDB:5EDL"
                     /db_xref="SubtiList:BG13250"
                     /db_xref="UniProtKB/Swiss-Prot:O34738"
                     /translation="MKSWKVKEIVIMSVISIVFAVVYLLFTHFGNVLAGMFGPIAYEP
                     IYGIWFIVSVIAAYMIRKPGAALVSEIIAALVECLLGNPSGPMVIVIGIVQGLGAEAV
                     FLATRWKAYSLPVLMLAGMGSSVASFIYDLFVSGYAAYSPGYLLIMLVIRLISGALLA
                     GLLGKAVSDSLAYTGVLNGMALGKELKKKRKRASEHASL*"
                     /label="thiV CDS"
     gene            complement(1277415..1278014)
                     /gene="thiV"
                     /locus_tag="BSU_13230"
                     /old_locus_tag="BSU13230"
                     /label="thiV gene"
     CDS             complement(1278016..1278618)
                     /gene="thiU"
                     /locus_tag="BSU_13240"
                     /old_locus_tag="BSU13240"
                     /function="16.1: Circulate"
                     /experiment="publication(s) with functional evidences,
                     PMID:15451668, 16291685, 16356850, 20471400"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 15451668, 16291685,
                     16356850, 20471400; Product type f: factor"
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine-binding protein (oxidation stress
                     protein)"
                     /protein_id="NP_389207.1"
                     /db_xref="EnsemblGenomes-Gn:BSU13240"
                     /db_xref="EnsemblGenomes-Tr:CAB13181"
                     /db_xref="GOA:O34911"
                     /db_xref="InterPro:IPR011522"
                     /db_xref="InterPro:IPR015835"
                     /db_xref="InterPro:IPR029756"
                     /db_xref="PDB:1S7H"
                     /db_xref="PDB:1S99"
                     /db_xref="PDB:1SBR"
                     /db_xref="SubtiList:BG13251"
                     /db_xref="UniProtKB/Swiss-Prot:O34911"
                     /translation="MEHICGTSRIAGFRFSLYPMTDDFISVIKSALKKTDTSKVWTKT
                     DHISTVLRGSIDHVFDAAKAIYLHAANSEQHIVMNGTFSIGCPGDTQGDTYLSKGDKR
                     VNEDAVRGLKAEAPCQFALYPMNEPDYMGLIMEAVDIAKAQGTFVQGVHYASELDGDA
                     HDVFSTLEAVFRMAEQQTNHITMTVNLSANSPSRKNRKQG*"
                     /label="thiU CDS"
     gene            complement(1278016..1278618)
                     /gene="thiU"
                     /locus_tag="BSU_13240"
                     /old_locus_tag="BSU13240"
                     /label="thiU gene"
     downshifts      complement(1278696)
                     /Source="Nicolas_upshifts"
                     /id="D726"
                     /incds=0
                     /nref=28
                     /ntot=88
                     /MaxReadThrough="7.47395"
                     /MaxDrop="5.73297"
                     /score="19.7469386"
                     /energy="-10.9"
                     /TU="U1069"
                     /idTUdmin="U1069"
                     /TUdmin="-3629"
                     /isTUend="FALSE"
                     /label="downshifts"
     misc_RNA        complement(1278715..1278827)
                     /gene="tswB"
                     /locus_tag="BSU_misc_RNA_19"
                     /product="thiamine pyrophosphate riboswitch"
                     /note="Evidence 2a: Function from experimental evidences
                     in other organisms; PubMedId: 11470904, 12410317,
                     15862294, 16728979, 16962976, 17307816, 18179415,
                     18776013; Product type n: RNA"
                     /function="16.3: Control"
                     /label="tswB RNA"
     gene            complement(1278715..1278827)
                     /gene="tswB"
                     /locus_tag="BSU_misc_RNA_19"
                     /label="tswB gene"
     promotor_-35    1278828..1278831
                     /Source="Nicolas_upshift_promotors"
                     /id="U1068"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.425574425574426"
                     /psig="0.987012987012987"
                     /xcortree=1848
                     /SigmaFactorBS="tcagccaaaacagcacccctagtgctttccGTATacaatttt
                     ttattttGACATCATAATAGATGATAAgaatcattttgtaaacaacgaaatcattttt
                     t"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    complement(1278842..1278861)
                     /Source="Nicolas_upshift_promotors"
                     /id="U1069"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.917082917082917"
                     /psig=1
                     /xcortree=2882
                     /SigmaFactorBS="accatcctctcccgtccctatatgaaaaaaatgatttcgtTG
                     TTTACAaaatgattcttatcATCTATTATGATGTCAAAATaaaaaattgtatacggaa
                     a"
                     /listShort="NA, thiU, thiV, thiW, thiX"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     promotor_-10    1278847..1278866
                     /Source="Nicolas_upshift_promotors"
                     /id="U1068"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.425574425574426"
                     /psig="0.987012987012987"
                     /xcortree=1848
                     /SigmaFactorBS="tcagccaaaacagcacccctagtgctttccGTATacaatttt
                     ttattttGACATCATAATAGATGATAAgaatcattttgtaaacaacgaaatcattttt
                     t"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        1278858
                     /Source="Nicolas_upshifts"
                     /id="U1068"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.425574425574426"
                     /psig="0.987012987012987"
                     /xcortree=1848
                     /SigmaFactorBS="tcagccaaaacagcacccctagtgctttccGTATacaatttt
                     ttattttGACATCATAATAGATGATAAgaatcattttgtaaacaacgaaatcattttt
                     t"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     upshifts        complement(1278863)
                     /Source="Nicolas_upshifts"
                     /id="U1069"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.917082917082917"
                     /psig=1
                     /xcortree=2882
                     /SigmaFactorBS="accatcctctcccgtccctatatgaaaaaaatgatttcgtTG
                     TTTACAaaatgattcttatcATCTATTATGATGTCAAAATaaaaaattgtatacggaa
                     a"
                     /listShort="NA, thiU, thiV, thiW, thiX"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(1278876..1278883)
                     /Source="Nicolas_upshift_promotors"
                     /id="U1069"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.917082917082917"
                     /psig=1
                     /xcortree=2882
                     /SigmaFactorBS="accatcctctcccgtccctatatgaaaaaaatgatttcgtTG
                     TTTACAaaatgattcttatcATCTATTATGATGTCAAAATaaaaaattgtatacggaa
                     a"
                     /listShort="NA, thiU, thiV, thiW, thiX"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             1278929..1279615
                     /gene="ykoG"
                     /locus_tag="BSU_13250"
                     /old_locus_tag="BSU13250"
                     /function="16.3: Control"
                     /experiment="publication(s) with functional evidences,
                     PMID:11717295"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 11717295; Product type r:
                     regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="two-component response regulator [YkoH]"
                     /protein_id="NP_389208.1"
                     /db_xref="EnsemblGenomes-Gn:BSU13250"
                     /db_xref="EnsemblGenomes-Tr:CAB13182"
                     /db_xref="GOA:O34903"
                     /db_xref="InterPro:IPR001789"
                     /db_xref="InterPro:IPR001867"
                     /db_xref="InterPro:IPR011006"
                     /db_xref="InterPro:IPR036388"
                     /db_xref="SubtiList:BG13252"
                     /db_xref="UniProtKB/Swiss-Prot:O34903"
                     /translation="MEKGHILIVEDEEKIARVLQLELEYEGYSVTIKHNGTEGLDAAA
                     EGGYSLVLLDVMLPGLSGLEVLRRLRKTDSQTPVILLTARDSIPDKVTGLDIGANDYV
                     TKPFEIEELLARIRAALRQNGTKTEDIGTFLTYDDLRVNEKTREVRRGDKEVELTPRE
                     FDLLVYMLKHPQQVLTREQILSSVWGFDYIGDTNVVDVYIRYIRKKLDYPYEKQLIHT
                     IRGVGYAIKG*"
                     /label="ykoG CDS"
     gene            1278929..1279615
                     /gene="ykoG"
                     /locus_tag="BSU_13250"
                     /old_locus_tag="BSU13250"
                     /label="ykoG gene"
     CDS             1279619..1280983
                     /gene="ykoH"
                     /locus_tag="BSU_13260"
                     /old_locus_tag="BSU13260"
                     /EC_number="2.7.13.3"
                     /function="16.12: Sense"
                     /function="16.3: Control"
                     /experiment="publication(s) with functional evidences,
                     PMID:11717295"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 11717295; Product type
                     rc: receptor"
                     /codon_start=1
                     /transl_table=11
                     /product="two-component sensor histidine kinase [YkoG]"
                     /protein_id="NP_389209.1"
                     /db_xref="EnsemblGenomes-Gn:BSU13260"
                     /db_xref="EnsemblGenomes-Tr:CAB13183"
                     /db_xref="GOA:O34638"
                     /db_xref="InterPro:IPR003594"
                     /db_xref="InterPro:IPR003660"
                     /db_xref="InterPro:IPR003661"
                     /db_xref="InterPro:IPR004358"
                     /db_xref="InterPro:IPR005467"
                     /db_xref="InterPro:IPR036097"
                     /db_xref="InterPro:IPR036890"
                     /db_xref="SubtiList:BG13253"
                     /db_xref="UniProtKB/Swiss-Prot:O34638"
                     /translation="MKLKTKIHLYTSISLLILLILVHTAVYLIFSSALTSKDAARLAD
                     ETDNIAEALRAAETEGVALQDMLQAYLPANGMVRVVNGDQKAVMTITKEKAYKDFPLS
                     FHSGETADVRKPDGKLFAEAAVPVIWTDGQVVSLQLVERLENTEESLFLLKIILIAAS
                     AAVCIASFFAGSLLARRIINPIRRLMITMKDIQRDKEFKTISLEGQSNDELYQMGLTF
                     NEMAMMLKEHYDKQQQFVQDASHELKTPLTIIESYSSLMKRWGAKKPEVLEESIEAIH
                     SEAVHMKKLTNQLLALAKSHQGLEVDLKTIDLIKAARAVMQTLQSVYQRDILLETDKE
                     SLLVKADEERIKQLLTILLDNAIKYSEKPIEMSAGTRNGRPFLSVRDEGIGIPEEHIP
                     HLFERFYRADEARNRKTGGTGLGLSIAKQIADEHGIELSVKSKPGQGTAVTMQFSEQN
                     GGGR*"
                     /label="ykoH CDS"
     gene            1279619..1280983
                     /gene="ykoH"
                     /locus_tag="BSU_13260"
                     /old_locus_tag="BSU13260"
                     /label="ykoH gene"
     CDS             1280980..1281660
                     /gene="ykoI"
                     /locus_tag="BSU_13270"
                     /old_locus_tag="BSU13270"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms; PubMedId: 11717295; Product type m :
                     membranecomponent"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved membrane protein of unknown function"
                     /protein_id="NP_389210.1"
                     /db_xref="EnsemblGenomes-Gn:BSU13270"
                     /db_xref="EnsemblGenomes-Tr:CAB13184"
                     /db_xref="GOA:O34551"
                     /db_xref="InterPro:IPR014722"
                     /db_xref="InterPro:IPR025711"
                     /db_xref="SubtiList:BG13254"
                     /db_xref="UniProtKB/Swiss-Prot:O34551"
                     /translation="MTKTIKTVSFAAAAILVVIICTFLIIRQTHENVLSKETVVKKVE
                     ASYEGKVTKATQSKDKKTYDITLENPKGTYFVKADAISADILSMNRVKAVNPSAMTEK
                     EAEHLALERVPGTVKKQTRQSQVATYTIQKEDGKTYEVKVDMQAKTVLSADQISSKDQ
                     QKTPITKKEAKTIAERKTGGTADDADLEESEGTLIFEVDVDLPDNKEATVKINAYTGK
                     VANIVYED*"
                     /label="ykoI CDS"
     gene            1280980..1281660
                     /gene="ykoI"
                     /locus_tag="BSU_13270"
                     /old_locus_tag="BSU13270"
                     /label="ykoI gene"
     promotor_-35    1281689..1281694
                     /Source="Nicolas_upshift_promotors"
                     /id="U1070"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.352647352647353"
                     /psig="0.748251748251748"
                     /xcortree=658
                     /SigmaFactorBS="aagactgacggtttctcatcaaattctcatcttgctCTCGTT
                     ttcctttcatgttgaGTATGTAAACTGTACTCATacaaaacaaaggagggctcacaaa
                     t"
                     /listShort="ykoJ, ykzD"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    1281710..1281728
                     /Source="Nicolas_upshift_promotors"
                     /id="U1070"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.352647352647353"
                     /psig="0.748251748251748"
                     /xcortree=658
                     /SigmaFactorBS="aagactgacggtttctcatcaaattctcatcttgctCTCGTT
                     ttcctttcatgttgaGTATGTAAACTGTACTCATacaaaacaaaggagggctcacaaa
                     t"
                     /listShort="ykoJ, ykzD"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        1281713
                     /Source="Nicolas_upshifts"
                     /id="U1070"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.352647352647353"
                     /psig="0.748251748251748"
                     /xcortree=658
                     /SigmaFactorBS="aagactgacggtttctcatcaaattctcatcttgctCTCGTT
                     ttcctttcatgttgaGTATGTAAACTGTACTCATacaaaacaaaggagggctcacaaa
                     t"
                     /listShort="ykoJ, ykzD"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             1281752..1282264
                     /gene="ykoJ"
                     /locus_tag="BSU_13280"
                     /old_locus_tag="BSU13280"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 17209068; Product type
                     ph: phenotype"
                     /codon_start=1
                     /transl_table=11
                     /product="putative exported protein"
                     /protein_id="NP_389211.1"
                     /db_xref="EnsemblGenomes-Gn:BSU13280"
                     /db_xref="EnsemblGenomes-Tr:CAB13185"
                     /db_xref="InterPro:IPR025711"
                     /db_xref="SubtiList:BG13255"
                     /db_xref="UniProtKB/Swiss-Prot:O35012"
                     /translation="MLKKKWMVGLLAGCLAAGGFSYNAFATENNENRQASSKTDALTE
                     QEAEAIAKTVVDGTVEDIDRDLYNGKEVYEVEIEKEGEDYDVYVDIHTKQALNDPLKE
                     KAEQVAITKEEAEEIALKQTGGTVTESKLDEDDGAYIYEMEIQTKQGTETEFEISAKD
                     GRIIKQEIDD*"
                     /label="ykoJ CDS"
     gene            1281752..1282264
                     /gene="ykoJ"
                     /locus_tag="BSU_13280"
                     /old_locus_tag="BSU13280"
                     /label="ykoJ gene"
     downshifts      1282250
                     /Source="Nicolas_upshifts"
                     /id="D727"
                     /incds=0
                     /nref=52
                     /ntot=228
                     /MaxReadThrough="3.74302"
                     /MaxDrop="6.03059"
                     /score="28.1760649"
                     /energy="-13.7"
                     /TU="U1070"
                     /idTUdmin="U1070"
                     /TUdmin="-198"
                     /isTUend="FALSE"
                     /label="downshifts"
     promotor_-35    1282295..1282301
                     /Source="Nicolas_upshift_promotors"
                     /id="U1071"
                     /multdbtbs="-"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp="0.999000999001"
                     /psig="0.999000999001"
                     /xcortree=922
                     /SigmaFactorBS="gatgactaatcaaaacccccgctgcagcgggggtttttcATG
                     ATAAgaaaccttcttttGGACAATCTAAGtagaaaaggaggcgaaacgcatggaaaag
                     a"
                     /listShort="ykzD"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    1282315..1282326
                     /Source="Nicolas_upshift_promotors"
                     /id="U1071"
                     /multdbtbs="-"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp="0.999000999001"
                     /psig="0.999000999001"
                     /xcortree=922
                     /SigmaFactorBS="gatgactaatcaaaacccccgctgcagcgggggtttttcATG
                     ATAAgaaaccttcttttGGACAATCTAAGtagaaaaggaggcgaaacgcatggaaaag
                     a"
                     /listShort="ykzD"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        1282316
                     /Source="Nicolas_upshifts"
                     /id="U1071"
                     /multdbtbs="-"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp="0.999000999001"
                     /psig="0.999000999001"
                     /xcortree=922
                     /SigmaFactorBS="gatgactaatcaaaacccccgctgcagcgggggtttttcATG
                     ATAAgaaaccttcttttGGACAATCTAAGtagaaaaggaggcgaaacgcatggaaaag
                     a"
                     /listShort="ykzD"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             1282347..1282484
                     /gene="ykzD"
                     /locus_tag="BSU_13290"
                     /old_locus_tag="BSU13290"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved hypothetical protein"
                     /protein_id="NP_389212.1"
                     /db_xref="EnsemblGenomes-Gn:BSU13290"
                     /db_xref="EnsemblGenomes-Tr:CAB13186"
                     /db_xref="InterPro:IPR022608"
                     /db_xref="SubtiList:BG13332"
                     /db_xref="UniProtKB/Swiss-Prot:O34405"
                     /translation="MEKKEEQYINQAEYVPHPTKEGEYALFLHETYHLLSEDDETQTT
                     E*"
                     /label="ykzD CDS"
     gene            1282347..1282484
                     /gene="ykzD"
                     /locus_tag="BSU_13290"
                     /old_locus_tag="BSU13290"
                     /label="ykzD gene"
     downshifts      1282457
                     /Source="Nicolas_upshifts"
                     /id="D728"
                     /incds=0
                     /nref=7
                     /ntot=31
                     /MaxReadThrough="1.81189"
                     /MaxDrop="3.56977"
                     /score="-4.52149284"
                     /energy="-5.9"
                     /TU="NA"
                     /idTUdmin="U1070"
                     /TUdmin=9
                     /isTUend="TRUE"
                     /label="downshifts"
     promotor_-35    1282543..1282550
                     /Source="Nicolas_upshift_promotors"
                     /id="U1072"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.55044955044955"
                     /psig=1
                     /xcortree=2735
                     /SigmaFactorBS="tccgtaattgtgatgtaagcgcatttattacttttttGAGTT
                     GACatagcttgtttttTTCTGTAATCTCAGTGTGTCaattcaattaggaacttcgtta
                     g"
                     /listShort="S473, S474, mgtE"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    1282564..1282583
                     /Source="Nicolas_upshift_promotors"
                     /id="U1072"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.55044955044955"
                     /psig=1
                     /xcortree=2735
                     /SigmaFactorBS="tccgtaattgtgatgtaagcgcatttattacttttttGAGTT
                     GACatagcttgtttttTTCTGTAATCTCAGTGTGTCaattcaattaggaacttcgtta
                     g"
                     /listShort="S473, S474, mgtE"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     S_feature       1282566..1282885
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1395590_1395909"
                     /HighExp="LBGstat, LBGtran, M40t45, MG 25, Mt0, Salt, MG
                     45, LPhT, BMM, MG t5"
                     /AntisenseName="ykzO"
                     /AntisenseCor="-0.16301119751811899"
                     /AntisenseRegPval="-2.1"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig=1
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S473"
     upshifts        1282566
                     /Source="Nicolas_upshifts"
                     /id="U1072"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.55044955044955"
                     /psig=1
                     /xcortree=2735
                     /SigmaFactorBS="tccgtaattgtgatgtaagcgcatttattacttttttGAGTT
                     GACatagcttgtttttTTCTGTAATCTCAGTGTGTCaattcaattaggaacttcgtta
                     g"
                     /listShort="S473, S474, mgtE"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     misc_RNA        1282598..1282751
                     /gene="swmG"
                     /locus_tag="BSU_misc_RNA_68"
                     /product="magnesium riboswitch"
                     /experiment="publication(s) with functional evidences,
                     PMID:15096624, 17803910, 21315082, 28455443"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 15096624, 17803910,
                     21315082, 28455443; Product type n: RNA"
                     /function="16.12: Sense"
                     /function="16.3: Control"
                     /label="swmG RNA"
     gene            1282598..1282751
                     /gene="swmG"
                     /locus_tag="BSU_misc_RNA_68"
                     /label="swmG gene"
     promotor_-35    1282863..1282872
                     /Source="Nicolas_upshift_promotors"
                     /id="U1073"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp="0.876123876123876"
                     /psig="0.876123876123876"
                     /xcortree=1632
                     /SigmaFactorBS="ccaatcaaaggaggtgcggagtatggattctccccaTTCGAG
                     TCAAtctgaagaagtaCCCATATACTATGACAGCAAgacaattgattacacgatgagg
                     a"
                     /listShort="S474, mgtE"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    1282885..1282904
                     /Source="Nicolas_upshift_promotors"
                     /id="U1073"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp="0.876123876123876"
                     /psig="0.876123876123876"
                     /xcortree=1632
                     /SigmaFactorBS="ccaatcaaaggaggtgcggagtatggattctccccaTTCGAG
                     TCAAtctgaagaagtaCCCATATACTATGACAGCAAgacaattgattacacgatgagg
                     a"
                     /listShort="S474, mgtE"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     S_feature       1282887..1282988
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1395911_1396012"
                     /HighExp="LBGstat, LBGtran, M40t45, Mt0, LPhT, Paraq, MG
                     t5, MG 25, MG 60, Salt"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="0.99773400000000001"
                     /TUshortSig="SigK, SigA"
                     /TUshortPSig="0.876, 1"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S474"
     upshifts        1282887
                     /Source="Nicolas_upshifts"
                     /id="U1073"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp="0.876123876123876"
                     /psig="0.876123876123876"
                     /xcortree=1632
                     /SigmaFactorBS="ccaatcaaaggaggtgcggagtatggattctccccaTTCGAG
                     TCAAtctgaagaagtaCCCATATACTATGACAGCAAgacaattgattacacgatgagg
                     a"
                     /listShort="S474, mgtE"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             1282989..1284344
                     /gene="mgtE"
                     /locus_tag="BSU_13300"
                     /old_locus_tag="BSU13300"
                     /function="16.1: Circulate"
                     /experiment="publication(s) with functional evidences,
                     PMID:15096624, 22970223, 24415722, 24968120, 25182490"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 15096624, 22970223,
                     24415722, 24968120, 25182490; Product type t :
                     transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="magnesium transporter"
                     /protein_id="NP_389213.1"
                     /db_xref="EnsemblGenomes-Gn:BSU13300"
                     /db_xref="EnsemblGenomes-Tr:CAB13187"
                     /db_xref="GOA:O34442"
                     /db_xref="InterPro:IPR000644"
                     /db_xref="InterPro:IPR006667"
                     /db_xref="InterPro:IPR006668"
                     /db_xref="InterPro:IPR006669"
                     /db_xref="InterPro:IPR036739"
                     /db_xref="SubtiList:BG13256"
                     /db_xref="UniProtKB/Swiss-Prot:O34442"
                     /translation="MVQNMTYDELILRIIILLRDGKIRDFRSVIDELQPYDMAFIFKE
                     MPEKHRARYLSYLTVDDITDMIGELEREFQLVVLNKVGKTKATLAMNKMDNDDLAQLL
                     EEMDEELKEQLLSSMEASESKAVQLLMNYPADSAGRMMTNRYVWIPQHYTVKDAVVKL
                     KSFAEIAESINYLYVINESKQLVGVLSYRDLILGEPEEKVQDLMFTRVISADALQDQE
                     EVARLIERYDFLAIPVVEENNVLVGIVTVDDIIDVVIREADEDYEKFAASGKDITFDT
                     KAYVAAYRRLPWLILLLFIGLISGSIISYFEDALKQVVALAFFMPMVSGMTGNTGTQS
                     LAVVIRGLSKEEMNKKTIVRLIFREFRTSIFIGAVCSVLIAIVSIIWQGNALLGFVVA
                     SSLFLTLIIGTMSGTIIPIILHKLKVDPAIASGPLITTLNDILSLLIYFGIATAFIHS
                     L*"
                     /label="mgtE CDS"
     gene            1282989..1284344
                     /gene="mgtE"
                     /locus_tag="BSU_13300"
                     /old_locus_tag="BSU13300"
                     /label="mgtE gene"
     downshifts      1284335
                     /Source="Nicolas_upshifts"
                     /id="D729"
                     /incds=0
                     /nref=160
                     /ntot=239
                     /MaxReadThrough="1.02063"
                     /MaxDrop="7.38933"
                     /score="-4.14569718"
                     /energy="-8.9"
                     /TU="NA"
                     /idTUdmin="U1072"
                     /TUdmin="-4"
                     /isTUend="TRUE"
                     /label="downshifts"
     CDS             complement(1284387..1284719)
                     /gene="tnrA"
                     /locus_tag="BSU_13310"
                     /old_locus_tag="BSU13310"
                     /function="16.3: Control"
                     /experiment="publication(s) with functional evidences,
                     PMID:10231480, 12823818, 15916606, 16547045, 17085574,
                     17183219, 21435182, 23535029, 26635369"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 10231480, 12823818,
                     15916606, 16547045, 17085574, 17183219, 21435182,
                     23535029, 26635369; Product type r: regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="nitrogen sensing transcriptional regulator"
                     /protein_id="NP_389214.1"
                     /db_xref="EnsemblGenomes-Gn:BSU13310"
                     /db_xref="EnsemblGenomes-Tr:CAB13188"
                     /db_xref="GOA:Q45666"
                     /db_xref="InterPro:IPR000551"
                     /db_xref="InterPro:IPR009061"
                     /db_xref="PDB:4S0R"
                     /db_xref="SubtiList:BG11805"
                     /db_xref="UniProtKB/Swiss-Prot:Q45666"
                     /translation="MTTEDHSYKDKKVISIGIVSELTGLSVRQIRYYEERKLIYPQRS
                     SRGTRKYSFADVERLMDIANKREDGVQTAEILKDMRKKEQMLKNDPQVRKKMLEGQLN
                     AHFRYKNR*"
                     /label="tnrA CDS"
     gene            complement(1284387..1284719)
                     /gene="tnrA"
                     /locus_tag="BSU_13310"
                     /old_locus_tag="BSU13310"
                     /label="tnrA gene"
     promotor_-10    complement(1284735..1284754)
                     /Source="Nicolas_upshift_promotors"
                     /id="U1074"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.625374625374625"
                     /psig="0.99100899100899"
                     /xcortree=1709
                     /SigmaFactorBS="tttgatgttagaaaatatgacaagcgtcagGTTTTTtctctt
                     tgttttttaTATACTATTATCAAAAGACAtccaggggtggaaaaatgaccacagaaga
                     t"
                     /listShort="tnrA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(1284745)
                     /Source="Nicolas_upshifts"
                     /id="U1074"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.625374625374625"
                     /psig="0.99100899100899"
                     /xcortree=1709
                     /SigmaFactorBS="tttgatgttagaaaatatgacaagcgtcagGTTTTTtctctt
                     tgttttttaTATACTATTATCAAAAGACAtccaggggtggaaaaatgaccacagaaga
                     t"
                     /listShort="tnrA"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     S_feature       complement(1284747..1285135)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1397771_1398159_c"
                     /HighExp="M9-stat, BC, LoTm, T1.30H, T0.30H, T2.0H, S8,
                     C30, T4.0H, T2.30H"
                     /AntisenseName="ykzB"
                     /AntisenseCor="-3.3870578787867499E-2"
                     /AntisenseRegPval="-0.2"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.92"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S475"
     promotor_-35    complement(1284770..1284775)
                     /Source="Nicolas_upshift_promotors"
                     /id="U1074"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.625374625374625"
                     /psig="0.99100899100899"
                     /xcortree=1709
                     /SigmaFactorBS="tttgatgttagaaaatatgacaagcgtcagGTTTTTtctctt
                     tgttttttaTATACTATTATCAAAAGACAtccaggggtggaaaaatgaccacagaaga
                     t"
                     /listShort="tnrA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_no_box 1284807..1284907
                     /Source="Nicolas_upshift_promotors"
                     /id="U1075"
                     /multdbtbs="-"
                     /comp="M21"
                     /sig="Sig-"
                     /pcomp="0.375624375624376"
                     /psig="0.295704295704296"
                     /xcortree=315
                     /SigmaFactorBS="agaagatttttgaaaaaatacggaagaaaaattaacaagaat
                     aatgcgtaacacccaagcgcgttttatcctttatgtaacgaatcaaacgaggaggaag
                     g"
                     /listShort="ykzB, ykoL"
                     /GFF_Attribute="listLong"
                     /label="promotor_no_box"
     upshifts        1284867
                     /Source="Nicolas_upshifts"
                     /id="U1075"
                     /multdbtbs="-"
                     /comp="M21"
                     /sig="Sig-"
                     /pcomp="0.375624375624376"
                     /psig="0.295704295704296"
                     /xcortree=315
                     /SigmaFactorBS="agaagatttttgaaaaaatacggaagaaaaattaacaagaat
                     aatgcgtaacacccaagcgcgttttatcctttatgtaacgaatcaaacgaggaggaag
                     g"
                     /listShort="ykzB, ykoL"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             1284914..1285069
                     /gene="ykzB"
                     /locus_tag="BSU_13320"
                     /old_locus_tag="BSU13320"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms; PubMedId: 10671441"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved protein of unknown function"
                     /protein_id="NP_389215.1"
                     /db_xref="EnsemblGenomes-Gn:BSU13320"
                     /db_xref="EnsemblGenomes-Tr:CAB13189"
                     /db_xref="SubtiList:BG13330"
                     /db_xref="UniProtKB/Swiss-Prot:O34923"
                     /translation="MEEEKAVSLAKEIIELDIKRDEMLETFMQLAGEQAFQLLRSVQN
                     GQYRKSS*"
                     /label="ykzB CDS"
     gene            1284914..1285069
                     /gene="ykzB"
                     /locus_tag="BSU_13320"
                     /old_locus_tag="BSU13320"
                     /label="ykzB gene"
     promotor_-35    1285078..1285085
                     /Source="Nicolas_upshift_promotors"
                     /id="U1076"
                     /multdbtbs="SigA"
                     /comp="M6"
                     /sig="Sig-"
                     /pcomp="0.985014985014985"
                     /psig="0.006993006993007"
                     /xcortree=10
                     /SigmaFactorBS="caataccgaaaatcttcgtaaacataaatTCTTTACAttaga
                     tTCATACCACGTTCATTTAaaaagagtatcttttgtataggatacctcaaaatgaagg
                     a"
                     /listShort="ykoL, S476, ykoM"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    1285092..1285109
                     /Source="Nicolas_upshift_promotors"
                     /id="U1076"
                     /multdbtbs="SigA"
                     /comp="M6"
                     /sig="Sig-"
                     /pcomp="0.985014985014985"
                     /psig="0.006993006993007"
                     /xcortree=10
                     /SigmaFactorBS="caataccgaaaatcttcgtaaacataaatTCTTTACAttaga
                     tTCATACCACGTTCATTTAaaaagagtatcttttgtataggatacctcaaaatgaagg
                     a"
                     /listShort="ykoL, S476, ykoM"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        1285109
                     /Source="Nicolas_upshifts"
                     /id="U1076"
                     /multdbtbs="SigA"
                     /comp="M6"
                     /sig="Sig-"
                     /pcomp="0.985014985014985"
                     /psig="0.006993006993007"
                     /xcortree=10
                     /SigmaFactorBS="caataccgaaaatcttcgtaaacataaatTCTTTACAttaga
                     tTCATACCACGTTCATTTAaaaagagtatcttttgtataggatacctcaaaatgaagg
                     a"
                     /listShort="ykoL, S476, ykoM"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-10    complement(1285120..1285139)
                     /Source="Nicolas_upshift_promotors"
                     /id="U1077"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.394605394605395"
                     /psig="0.92007992007992"
                     /xcortree=3030
                     /SigmaFactorBS="tcgttctttttctaaagcggatttcaataaattactCATAGC
                     GtcctccttcatttTGAGGTATCCTATACAAAAGatactctttttaaatgaacgtggt
                     a"
                     /listShort="S475, tnrA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(1285135)
                     /Source="Nicolas_upshifts"
                     /id="U1077"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.394605394605395"
                     /psig="0.92007992007992"
                     /xcortree=3030
                     /SigmaFactorBS="tcgttctttttctaaagcggatttcaataaattactCATAGC
                     GtcctccttcatttTGAGGTATCCTATACAAAAGatactctttttaaatgaacgtggt
                     a"
                     /listShort="S475, tnrA"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(1285153..1285159)
                     /Source="Nicolas_upshift_promotors"
                     /id="U1077"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.394605394605395"
                     /psig="0.92007992007992"
                     /xcortree=3030
                     /SigmaFactorBS="tcgttctttttctaaagcggatttcaataaattactCATAGC
                     GtcctccttcatttTGAGGTATCCTATACAAAAGatactctttttaaatgaacgtggt
                     a"
                     /listShort="S475, tnrA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             1285157..1285339
                     /gene="ykoL"
                     /locus_tag="BSU_13330"
                     /old_locus_tag="BSU13330"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms; PubMedId: 10671441"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved protein of unknown function"
                     /protein_id="NP_389216.1"
                     /db_xref="EnsemblGenomes-Gn:BSU13330"
                     /db_xref="EnsemblGenomes-Tr:CAB13190"
                     /db_xref="SubtiList:BG13257"
                     /db_xref="UniProtKB/Swiss-Prot:O34763"
                     /translation="MSNLLKSALEKERRHYSEKLYQIGVYNKEVMNKMTISELRKEYA
                     YFFRSITNHKNYPYTR*"
                     /label="ykoL CDS"
     gene            1285157..1285339
                     /gene="ykoL"
                     /locus_tag="BSU_13330"
                     /old_locus_tag="BSU13330"
                     /label="ykoL gene"
     downshifts      1285307
                     /Source="Nicolas_upshifts"
                     /id="D730"
                     /incds=0
                     /nref=2
                     /ntot=8
                     /MaxReadThrough="3.83398"
                     /MaxDrop="4.6651"
                     /score="19.6832496"
                     /energy="-11.2"
                     /TU="U1076"
                     /idTUdmin="U1075"
                     /TUdmin=0
                     /isTUend="TRUE"
                     /label="downshifts"
     promotor_-35    1285364..1285372
                     /Source="Nicolas_upshift_promotors"
                     /id="U1078"
                     /multdbtbs="-"
                     /comp="M1"
                     /sig="SigH"
                     /pcomp="0.996003996003996"
                     /psig="0.996003996003996"
                     /xcortree=361
                     /SigmaFactorBS="atacaagataatgtataaggatttttttgcttttaGAAGGAA
                     TTtctcgaattaTAGCGAATACGTATAGTAAgggactgaactcttattatatgtaagg
                     g"
                     /listShort="S476, ykoM"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    1285383..1285401
                     /Source="Nicolas_upshift_promotors"
                     /id="U1078"
                     /multdbtbs="-"
                     /comp="M1"
                     /sig="SigH"
                     /pcomp="0.996003996003996"
                     /psig="0.996003996003996"
                     /xcortree=361
                     /SigmaFactorBS="atacaagataatgtataaggatttttttgcttttaGAAGGAA
                     TTtctcgaattaTAGCGAATACGTATAGTAAgggactgaactcttattatatgtaagg
                     g"
                     /listShort="S476, ykoM"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     S_feature       1285389..1285471
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1398413_1398495"
                     /HighExp="T3.0H, M9-stat, T1.30H, T2.30H, Lbstat, T3.30H,
                     Lbtran, S2, T4.0H, T2.0H"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigH, Sig-"
                     /TUshortPSig="0.996, 0.00699"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S476"
     upshifts        1285389
                     /Source="Nicolas_upshifts"
                     /id="U1078"
                     /multdbtbs="-"
                     /comp="M1"
                     /sig="SigH"
                     /pcomp="0.996003996003996"
                     /psig="0.996003996003996"
                     /xcortree=361
                     /SigmaFactorBS="atacaagataatgtataaggatttttttgcttttaGAAGGAA
                     TTtctcgaattaTAGCGAATACGTATAGTAAgggactgaactcttattatatgtaagg
                     g"
                     /listShort="S476, ykoM"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             1285472..1285936
                     /gene="ykoM"
                     /locus_tag="BSU_13340"
                     /old_locus_tag="BSU13340"
                     /function="16.3: Control"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; Product type r: regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="putative transcriptional regulator (MarR
                     family)"
                     /protein_id="NP_389217.1"
                     /db_xref="EnsemblGenomes-Gn:BSU13340"
                     /db_xref="EnsemblGenomes-Tr:CAB13191"
                     /db_xref="GOA:O34949"
                     /db_xref="InterPro:IPR000835"
                     /db_xref="InterPro:IPR023187"
                     /db_xref="InterPro:IPR036388"
                     /db_xref="InterPro:IPR036390"
                     /db_xref="SubtiList:BG13258"
                     /db_xref="UniProtKB/Swiss-Prot:O34949"
                     /translation="MMRLSFNEEEVERAMNLYRVFARAFKSVSEHSIRDSKEHGFNPT
                     EFAVLELLYTRGPQKLQQIGSRLLLVSGNVTYVIDKLERNGFLVREQDPKDKRSVYAH
                     LTDKGNEYLDKIYPIHALRIARAFSGLSPDEQDQLIVLLKKAGIHSQHLLFR*"
                     /label="ykoM CDS"
     gene            1285472..1285936
                     /gene="ykoM"
                     /locus_tag="BSU_13340"
                     /old_locus_tag="BSU13340"
                     /label="ykoM gene"
     downshifts      1285921
                     /Source="Nicolas_upshifts"
                     /id="D731"
                     /incds=0
                     /nref=70
                     /ntot=210
                     /MaxReadThrough="2.86787"
                     /MaxDrop="5.38705"
                     /score="24.8730632"
                     /energy="-9.8"
                     /TU="U1078"
                     /idTUdmin="U1078"
                     /TUdmin="-112"
                     /isTUend="FALSE"
                     /label="downshifts"
     CDS             complement(1285951..1287072)
                     /gene="ykoN"
                     /locus_tag="BSU_13350"
                     /old_locus_tag="BSU13350"
                     /EC_number="2.4.1.-"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative glycosyltransferase"
                     /protein_id="NP_389218.2"
                     /db_xref="EnsemblGenomes-Gn:BSU13350"
                     /db_xref="EnsemblGenomes-Tr:CAB13192"
                     /db_xref="GOA:C0SPB9"
                     /db_xref="InterPro:IPR009695"
                     /db_xref="SubtiList:BG13259"
                     /db_xref="UniProtKB/Swiss-Prot:C0SPB9"
                     /translation="MKNILIFPFLSISTGHHHVADALQAELESQGLAAEKIDIFSHSY
                     RRLEKLSSVAYLKWIQYFPKTYSGIYRLLACGEFQHDKRYFMYEWLFTQQMRHILQEK
                     QPDIAFCTHALPSYLLNRLKPEYPNLTVVNVYTDFFVNQLWGRKNIDYHFVPSTEVKK
                     QLISEGIDQNNIYLTGIPVHQNFEMESADTLQHHPPYTIIITGGSMGVGGILKWVQEL
                     SPGGKILYKILCGRNEKLYSYVKSLHHPLIEAIPYLHSKAEMNRLYEQATGIMTKPGG
                     VTISECLQKRLPVFIYHALPGQEEMNLNLLHERKLVTDMRNWDMQKAEEYIAAFFQSN
                     EQMKEYKKHVNGYLGEMSDRKIKDVLKRIIWKQKNTLLK*"
                     /label="ykoN CDS"
     gene            complement(1285951..1287072)
                     /gene="ykoN"
                     /locus_tag="BSU_13350"
                     /old_locus_tag="BSU13350"
                     /label="ykoN gene"
     promotor_-35    1286360..1286368
                     /Source="Nicolas_upshift_promotors"
                     /id="U1079"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp="0.97902097902098"
                     /psig="0.97902097902098"
                     /xcortree=1311
                     /SigmaFactorBS="cctcaatcaaggggtggtgtaaacttttgacatagGAGTAGA
                     GCttttcgtttctgcCGCATAATATTTTGTATAAGatctttccgcctggcgacagttc
                     c"
                     /listShort="S477, ykoP"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    1286382..1286401
                     /Source="Nicolas_upshift_promotors"
                     /id="U1079"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp="0.97902097902098"
                     /psig="0.97902097902098"
                     /xcortree=1311
                     /SigmaFactorBS="cctcaatcaaggggtggtgtaaacttttgacatagGAGTAGA
                     GCttttcgtttctgcCGCATAATATTTTGTATAAGatctttccgcctggcgacagttc
                     c"
                     /listShort="S477, ykoP"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     S_feature       1286385..1287163
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1399409_1400187"
                     /HighExp="S6, S8, S7, S5, BT, B36, S4, S3, Pyr, G/S"
                     /AntisenseName="ykoN"
                     /AntisenseCor="0.84084970563549499"
                     /AntisenseRegPval="-72.400000000000006"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigK"
                     /TUshortPSig="0.979"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S477"
     upshifts        1286385
                     /Source="Nicolas_upshifts"
                     /id="U1079"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp="0.97902097902098"
                     /psig="0.97902097902098"
                     /xcortree=1311
                     /SigmaFactorBS="cctcaatcaaggggtggtgtaaacttttgacatagGAGTAGA
                     GCttttcgtttctgcCGCATAATATTTTGTATAAGatctttccgcctggcgacagttc
                     c"
                     /listShort="S477, ykoP"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-10    complement(1287101..1287112)
                     /Source="Nicolas_upshift_promotors"
                     /id="U1080"
                     /multdbtbs="-"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp="0.99100899100899"
                     /psig="0.99100899100899"
                     /xcortree=819
                     /SigmaFactorBS="aaggaaacaagttttcatcttttcaccttccttatgatcaaa
                     aacaccCTTATATtttgtgaacgttctCCTCAAAATATAgttgccatatttttttagg
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(1287121)
                     /Source="Nicolas_upshifts"
                     /id="U1080"
                     /multdbtbs="-"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp="0.99100899100899"
                     /psig="0.99100899100899"
                     /xcortree=819
                     /SigmaFactorBS="aaggaaacaagttttcatcttttcaccttccttatgatcaaa
                     aacaccCTTATATtttgtgaacgttctCCTCAAAATATAgttgccatatttttttagg
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(1287127..1287133)
                     /Source="Nicolas_upshift_promotors"
                     /id="U1080"
                     /multdbtbs="-"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp="0.99100899100899"
                     /psig="0.99100899100899"
                     /xcortree=819
                     /SigmaFactorBS="aaggaaacaagttttcatcttttcaccttccttatgatcaaa
                     aacaccCTTATATtttgtgaacgttctCCTCAAAATATAgttgccatatttttttagg
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             1287164..1287715
                     /gene="ykoP"
                     /locus_tag="BSU_13360"
                     /old_locus_tag="BSU13360"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved hypothetical protein"
                     /protein_id="NP_389219.2"
                     /db_xref="EnsemblGenomes-Gn:BSU13360"
                     /db_xref="EnsemblGenomes-Tr:CAB13193"
                     /db_xref="SubtiList:BG13260"
                     /db_xref="UniProtKB/Swiss-Prot:O34495"
                     /translation="MKTCFLSIWRVVDPIYFFFSRLSLIDNDQKSVFRVRLTKYKGHH
                     VVLSDGTHIRKNDVLVKIHLHNIKLIRELQSIESAVRKGIIIYQKVYQSMPLLLDYIN
                     NHKKSEKIKGIIGITMLDKGVERLGFDVITPVNPFYRCFKKVSHVPILYLTSKPVSLR
                     HLPNSSYLFISKEKLQKTYQKKD*"
                     /label="ykoP CDS"
     gene            1287164..1287715
                     /gene="ykoP"
                     /locus_tag="BSU_13360"
                     /old_locus_tag="BSU13360"
                     /label="ykoP gene"
     downshifts      1287683
                     /Source="Nicolas_upshifts"
                     /id="D732"
                     /incds=0
                     /nref=4
                     /ntot=25
                     /MaxReadThrough="3.31887"
                     /MaxDrop="3.7149"
                     /score="-2.92393792"
                     /energy="-7"
                     /TU="U1079"
                     /idTUdmin="U1079"
                     /TUdmin="-242"
                     /isTUend="FALSE"
                     /label="downshifts"
     CDS             complement(1287743..1288555)
                     /gene="ykoQ"
                     /locus_tag="BSU_13370"
                     /old_locus_tag="BSU13370"
                     /EC_number="3.1.-.-"
                     /function="16.11: Scavenge (Catabolism)"
                     /function="16.6: Maintain"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative metallophosphoesterase"
                     /protein_id="NP_389220.1"
                     /db_xref="EnsemblGenomes-Gn:BSU13370"
                     /db_xref="EnsemblGenomes-Tr:CAB13194"
                     /db_xref="GOA:O35040"
                     /db_xref="InterPro:IPR004843"
                     /db_xref="InterPro:IPR029052"
                     /db_xref="SubtiList:BG13261"
                     /db_xref="UniProtKB/Swiss-Prot:O35040"
                     /translation="MFTILLSLAILVFVPFLYKANRNTKDVKVNTISIDQKDGLPARK
                     KLNILHLSDLHLENISVSPEELYHLTKDQPVDIIALTGDFLDRKRNIPKLAGYLNALQ
                     KLKPAYGMYAVFGNHDYVLKEEDFQRLKRVLEENGCITLQNEHVRIETAAGPVNIIGI
                     DDYSTNRSNITGSYQSLENGYHLVLTHDPNIILDMKDVHYDYLLSGHFHGGQIHWPKP
                     YHLVKMGKLVRMNMIKGLHYHHDKPFYISEGLGQTGVNIRVGSRPEVTFHQI*"
                     /label="ykoQ CDS"
     gene            complement(1287743..1288555)
                     /gene="ykoQ"
                     /locus_tag="BSU_13370"
                     /old_locus_tag="BSU13370"
                     /label="ykoQ gene"
     promotor_-10    complement(1288515..1288534)
                     /Source="Nicolas_upshift_promotors"
                     /id="U1081"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.485514485514486"
                     /psig="0.997002997002997"
                     /xcortree=2484
                     /SigmaFactorBS="acttactatactgatagaagggaggggatatattttGTTTAC
                     aatcttactttcaTTGGCCATACTCGTATTTGTgccatttctatataaagcgaaccgc
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(1288529)
                     /Source="Nicolas_upshifts"
                     /id="U1081"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.485514485514486"
                     /psig="0.997002997002997"
                     /xcortree=2484
                     /SigmaFactorBS="acttactatactgatagaagggaggggatatattttGTTTAC
                     aatcttactttcaTTGGCCATACTCGTATTTGTgccatttctatataaagcgaaccgc
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(1288548..1288553)
                     /Source="Nicolas_upshift_promotors"
                     /id="U1081"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.485514485514486"
                     /psig="0.997002997002997"
                     /xcortree=2484
                     /SigmaFactorBS="acttactatactgatagaagggaggggatatattttGTTTAC
                     aatcttactttcaTTGGCCATACTCGTATTTGTgccatttctatataaagcgaaccgc
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-35    1288656..1288662
                     /Source="Nicolas_upshift_promotors"
                     /id="U1082"
                     /multdbtbs="-"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp=1
                     /psig=1
                     /xcortree=939
                     /SigmaFactorBS="aattaatgggtagagacaggttgaaaaacggattgtcatatg
                     aTGAATGAtttggaagggaaaAGGGATAATAAAttttgacacatgaggcagaacatgc
                     c"
                     /listShort="S478, ykoS, ykoT"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     S_feature       1288673..1288747
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1401697_1401771"
                     /HighExp="S5, S6, S7, S4, S8, T5.0H, ferm, nit, S3, Pyr"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigGF"
                     /TUshortPSig=1
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S478"
     upshifts        1288673
                     /Source="Nicolas_upshifts"
                     /id="U1082"
                     /multdbtbs="-"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp=1
                     /psig=1
                     /xcortree=939
                     /SigmaFactorBS="aattaatgggtagagacaggttgaaaaacggattgtcatatg
                     aTGAATGAtttggaagggaaaAGGGATAATAAAttttgacacatgaggcagaacatgc
                     c"
                     /listShort="S478, ykoS, ykoT"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-10    1288676..1288687
                     /Source="Nicolas_upshift_promotors"
                     /id="U1082"
                     /multdbtbs="-"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp=1
                     /psig=1
                     /xcortree=939
                     /SigmaFactorBS="aattaatgggtagagacaggttgaaaaacggattgtcatatg
                     aTGAATGAtttggaagggaaaAGGGATAATAAAttttgacacatgaggcagaacatgc
                     c"
                     /listShort="S478, ykoS, ykoT"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     CDS             1288748..1290442
                     /gene="ykoS"
                     /locus_tag="BSU_13380"
                     /old_locus_tag="BSU13380"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 15849754, 16850406;
                     Product type m: membrane component"
                     /codon_start=1
                     /transl_table=11
                     /product="putative integral membrane protein"
                     /protein_id="NP_389221.1"
                     /db_xref="EnsemblGenomes-Gn:BSU13380"
                     /db_xref="EnsemblGenomes-Tr:CAB13195"
                     /db_xref="GOA:O34830"
                     /db_xref="SubtiList:BG13262"
                     /db_xref="UniProtKB/Swiss-Prot:O34830"
                     /translation="MLRLMRQQKKETYYLWIALFLLLLYVSPLFILKEDAHIRVHDNL
                     DSNIAWYKVLADSGEIVGKVDAAIPQIINGLPRDAFGTEWSGIVWLHAFFSSMTAYAI
                     SQTVTRVVAFFGMYVLLKKHIIPEPKAAFIRIGVSLAFALTPFWPSGMLSTLGYPLAL
                     WAFLNIRKGDISWREWLTLGLLPLYSSFVLGFFFFLAGMACFWLYDAITKRRWNLMFL
                     GSIAFMTSIYLFVEYRLVYSMLFEHAPMHRIEFISSRHDVWHSLRLSIKNFVYGHNHV
                     MTVHTVVILPILMVVFAALLFKRNRTKPENVYLFLCVLNYGLSLWYAFWFNKIWAVPK
                     QKFAFLAEFNFARFHFLRPLVIYVSFALALYLIWRMGKGWKWLVYAAVAAQLMVLAPF
                     NEEYTYGVHYNAPTFREFYASEQFKEIKEYIGRPQDSYRVASIGLHPSIAQYNGFYTL
                     DTYNNLYPLSYKYEFRKIIEKELEKNSRLKQYFDEWGSRCYLFVDELGKRYDFKKNSK
                     KTINNLQLNTDVFKKMGGRYIFSSVPIMNAEQNHLALVKTFDHKDSAWRIYLYETR*"
                     /label="ykoS CDS"
     gene            1288748..1290442
                     /gene="ykoS"
                     /locus_tag="BSU_13380"
                     /old_locus_tag="BSU13380"
                     /label="ykoS gene"
     CDS             1290455..1291468
                     /gene="ykoT"
                     /locus_tag="BSU_13390"
                     /old_locus_tag="BSU13390"
                     /EC_number="2.-.-.-"
                     /function="16.2: Construct biomass (Anabolism)"
                     /function="16.13: Shape"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative glycosyltransferase"
                     /protein_id="NP_389222.1"
                     /db_xref="EnsemblGenomes-Gn:BSU13390"
                     /db_xref="EnsemblGenomes-Tr:CAB13196"
                     /db_xref="GOA:O34755"
                     /db_xref="InterPro:IPR001173"
                     /db_xref="InterPro:IPR029044"
                     /db_xref="SubtiList:BG13263"
                     /db_xref="UniProtKB/Swiss-Prot:O34755"
                     /translation="MKQSQPVLTIVVPCFNEEEVFQETSHQLTEVVDDLIEEKLIAED
                     SKILFVDDGSKDRTWALIAMESIRNKKVTGLKLACNVGHQKALLAGLHKAKNRSDCVI
                     SIDADLQDDISVIRDFMLKYHEGCEIVYGVRRSRKTDTFFKRTTALGFYRLMNKLGIK
                     LIYNHADFRLMNKRSLEELERYPEANLFLRGIVPMIGFKSAEVLYDRKERFAGKTKYP
                     LKKMLSFAFNGITSFSVAPIRFFTLLGFVLFFLSAVAGIGAFIQKLLGHTNAGWASLI
                     ISIWFLGGLQLMGIGIIGEYIGTIFSEVKRRPKYAIDIDLYNEQLSPLQRQEKERLEK
                     KYS*"
                     /label="ykoT CDS"
     gene            1290455..1291468
                     /gene="ykoT"
                     /locus_tag="BSU_13390"
                     /old_locus_tag="BSU13390"
                     /label="ykoT gene"
     downshifts      1291453
                     /Source="Nicolas_upshifts"
                     /id="D733"
                     /incds=0
                     /nref=13
                     /ntot=35
                     /MaxReadThrough="0.53349"
                     /MaxDrop="4.80671"
                     /score="19.4012674"
                     /energy="-13.7"
                     /TU="NA"
                     /idTUdmin="U1082"
                     /TUdmin=8
                     /isTUend="TRUE"
                     /label="downshifts"
     CDS             complement(1291494..1293329)
                     /gene="ligD"
                     /locus_tag="BSU_13400"
                     /old_locus_tag="BSU13400"
                     /EC_number="6.5.1.1"
                     /function="16.6: Maintain"
                     /experiment="publication(s) with functional evidences,
                     PMID:12215643, 16497325, 17293412, 23691176, 25355514,
                     26826709"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 12215643, 16497325,
                     17293412, 23691176, 25355514, 26826709; Product type e :
                     enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent DNA ligase subunit;
                     5'-2-deoxyribose-5-phosphate (dRP) lyase"
                     /protein_id="NP_389223.1"
                     /db_xref="EnsemblGenomes-Gn:BSU13400"
                     /db_xref="EnsemblGenomes-Tr:CAB13197"
                     /db_xref="GOA:O34398"
                     /db_xref="InterPro:IPR012310"
                     /db_xref="InterPro:IPR014143"
                     /db_xref="InterPro:IPR014145"
                     /db_xref="InterPro:IPR014146"
                     /db_xref="InterPro:IPR033652"
                     /db_xref="SubtiList:BG13264"
                     /db_xref="UniProtKB/Swiss-Prot:O34398"
                     /translation="MAFTMQPVLTSSPPIGAEWRYEVKYDGYRCILRIHSSGVTLTSR
                     NGVELSSTFPEITQFAKTAFQHLEKELPLTLDGEIVCLVNPCRADFEHLQVRGRLKRP
                     DKIQESANARPCCFLAFDLLERSGEDVTLLSYLDRKKSLRELISAAKLPASPDPYAKE
                     TIQSIPCYDHFDQLWEMVIKYDGEGIVAKKTNSKWLEKKRSSDWLKYKNFKQAYVCIT
                     GFNPNNGFLTVSVLKNGIMTPIASVSHGMRDEEKSAIREIMEQHGHQTPSGEFTLEPS
                     ICAAVQYLTILQGTLREVSFIGFEFQMDWTECTYAQVIRHSKPVHPKLQFTSLDKIIF
                     EKNKKTKEDFIQYMIEVSDYLLPFLKNRAVTVIRYPHGSRSESFFQKNKPDYAPDFVQ
                     SFYDGSHEHIVCEDMSTLLWLCNQLALEFHVPFQTIKSRRPAEIVIDLDPPSRDDFLM
                     AVQAANELKRLLDSFGITSYPKLSGNKGIQLYIPLSPEAFTYEETRQFTQLIAEYCTN
                     AFPELFTTERLIKNRHCKLYLDYLQHAEGKTIICPYSTRGNELGTVAAPLYWHEVQSS
                     LTPALFTIDTVIDRIKKQGCPFFDFYRNPQDEPLSAILHQLKKKS*"
                     /label="ligD CDS"
     gene            complement(1291494..1293329)
                     /gene="ligD"
                     /locus_tag="BSU_13400"
                     /old_locus_tag="BSU13400"
                     /label="ligD gene"
     downshifts      complement(1291543)
                     /Source="Nicolas_upshifts"
                     /id="D734"
                     /incds=0
                     /nref=10
                     /ntot=54
                     /MaxReadThrough="0.67916"
                     /MaxDrop="5.08051"
                     /score="-8.48510187"
                     /energy="-13.7"
                     /TU="NA"
                     /idTUdmin="U1083"
                     /TUdmin=0
                     /isTUend="TRUE"
                     /label="downshifts"
     CDS             complement(1293333..1294268)
                     /gene="ligV"
                     /locus_tag="BSU_13410"
                     /old_locus_tag="BSU13410"
                     /function="16.6: Maintain"
                     /experiment="publication(s) with functional evidences,
                     PMID:11095673, 12215643, 16497325, 16780573, 23691176,
                     25355514"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 11095673, 12215643,
                     16497325, 16780573, 23691176, 25355514; Product type e :
                     enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent DNA ligase subunit Ku;
                     AP/deoxyribose 5'-phosphate (5'-dRP)-lyase"
                     /protein_id="NP_389224.1"
                     /db_xref="EnsemblGenomes-Gn:BSU13410"
                     /db_xref="EnsemblGenomes-Tr:CAB13198"
                     /db_xref="GOA:O34859"
                     /db_xref="InterPro:IPR006164"
                     /db_xref="InterPro:IPR009187"
                     /db_xref="InterPro:IPR016194"
                     /db_xref="SubtiList:BG13265"
                     /db_xref="UniProtKB/Swiss-Prot:O34859"
                     /translation="MNRTPSLHTKEKKGFIDMHTMWKGSISFGLVNIPIKLYAATEDK
                     DIKLRSLHKEDHAPIKYEKVCTNCEKTLSPDEIVKGYEYVKGKYVVLTDEDLKSLKQE
                     HEEKAVEIVDFVQLQEIDPIYFNRSYFVGPGDNGTKAYTLLREALRSTGKIGIANMTI
                     RSKQQLAILRVYENCIVMESIHYPDEVRSAAQVPGVPDQSNVNDKELQTAITLIDELT
                     AKFEPEKYEDTYRQALLQRVNDKLENKETAVTPDKAPPREDVIDLVSALQASIDRTRR
                     PNRETPAAAPAQAAEPKGAGDKKQKTTRKKASGTS*"
                     /label="ligV CDS"
     gene            complement(1293333..1294268)
                     /gene="ligV"
                     /locus_tag="BSU_13410"
                     /old_locus_tag="BSU13410"
                     /label="ligV gene"
     promotor_-10    complement(1294239..1294250)
                     /Source="Nicolas_upshift_promotors"
                     /id="U1083"
                     /multdbtbs="-"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp="0.999000999001"
                     /psig="0.999000999001"
                     /xcortree=856
                     /SigmaFactorBS="aataacagcgccggctttttttcacccataagttactaCACA
                     TGAatcgtactccttctCTTCACACTAAAgaaaaaaaggggtttatcgatatgcatac
                     a"
                     /listShort="ykoV, ykoU"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(1294249)
                     /Source="Nicolas_upshifts"
                     /id="U1083"
                     /multdbtbs="-"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp="0.999000999001"
                     /psig="0.999000999001"
                     /xcortree=856
                     /SigmaFactorBS="aataacagcgccggctttttttcacccataagttactaCACA
                     TGAatcgtactccttctCTTCACACTAAAgaaaaaaaggggtttatcgatatgcatac
                     a"
                     /listShort="ykoV, ykoU"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(1294265..1294271)
                     /Source="Nicolas_upshift_promotors"
                     /id="U1083"
                     /multdbtbs="-"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp="0.999000999001"
                     /psig="0.999000999001"
                     /xcortree=856
                     /SigmaFactorBS="aataacagcgccggctttttttcacccataagttactaCACA
                     TGAatcgtactccttctCTTCACACTAAAgaaaaaaaggggtttatcgatatgcatac
                     a"
                     /listShort="ykoV, ykoU"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             complement(1294305..1296707)
                     /gene="dgcW"
                     /locus_tag="BSU_13420"
                     /old_locus_tag="BSU13420"
                     /EC_number="2.7.7.65"
                     /function="16.3: Control"
                     /function="16.1: Circulate"
                     /experiment="publication(s) with functional evidences,
                     PMID:11728710, 17010156, 23893111, 28536559"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 11728710, 17010156,
                     23893111, 28536559; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="diguanylate cyclase"
                     /protein_id="YP_054577.2"
                     /db_xref="EnsemblGenomes-Gn:BSU13420"
                     /db_xref="EnsemblGenomes-Tr:CAB13199"
                     /db_xref="GOA:O34311"
                     /db_xref="InterPro:IPR000160"
                     /db_xref="InterPro:IPR001633"
                     /db_xref="InterPro:IPR005330"
                     /db_xref="InterPro:IPR029787"
                     /db_xref="InterPro:IPR035919"
                     /db_xref="InterPro:IPR035965"
                     /db_xref="SubtiList:BG13266"
                     /db_xref="UniProtKB/Swiss-Prot:O34311"
                     /translation="MEIHVTYNTTLICLSILIACTASYISLELSRKVTINTGLKSKIW
                     LIGGSLIMGFGIWSMHFVGMMAVHMEMPMEYEFMPLMAAIGASVSGSFVSLYFVSRHI
                     LTYYRLLTGSVVLGASIASMHYIGMSAISRVMIIYEPILFTVSIIIAIAASFVSLKIF
                     FDLAVKKHSEHLIFYKGVSSIVMGIGISGMHYTGMLAATFHKDMAPPGSHMEVQTFHW
                     SIFVTLIIFCIQTLLLFSSHADRKFIKQSERIKDNEQRFQSLIVHNIDAIFILSLEGD
                     IISSNHAGEEMISKFGFSMHDWRNYTSLKVKRLFEQVKKDKQAMNSDSDLITEKGQFH
                     LNITLIPVEVNQELDSIYVICKDMTKQYKAEKEIHRMAHYDSLTDLPNRRHAISHLTK
                     VLNREHSLHYNTVVFFLDLNRFKVINDALGHNVGDQLLQFAAKRLSSVVPDNGFIARL
                     GGDEFIIILTDANTGTGEADVLARKIIQKFKKPFKIQDHTLVTSVSIGIAISPKDGTD
                     GLELMKKADMAMYAAKERNKSKYRYYSFSIGNKETVKLNQEMVLREAIENDRFVLHYQ
                     PQFSVKKQKMTGAEALIRLVTPDGQLRPPGEFIGVAEETGLIIDIGKWIIDEACKQAR
                     IWHDKGYDLSVAINISARQFQSKDLIPLIKDTLNKYQLPPQLLEVEVTESMTMDNLNH
                     SKKVLSSLTELGIRISIDDFGTGHSSLSYLKDFPIHRLKIDKSFIDDIQTHPKSEQIT
                     GAIIAMGHQLSLQVIAEGVENAAQKQLLFEKGCDHLQGFFFSRPIPPEQFEQFIIEQP
                     SQ*"
                     /label="dgcW CDS"
     gene            complement(1294305..1296707)
                     /gene="dgcW"
                     /locus_tag="BSU_13420"
                     /old_locus_tag="BSU13420"
                     /label="dgcW gene"
     downshifts      complement(1294337)
                     /Source="Nicolas_upshifts"
                     /id="D735"
                     /incds=0
                     /nref=13
                     /ntot=101
                     /MaxReadThrough="1.93589"
                     /MaxDrop="3.26543"
                     /score="6.55794882"
                     /energy="-9"
                     /TU="NA"
                     /idTUdmin="U1084"
                     /TUdmin=0
                     /isTUend="TRUE"
                     /label="downshifts"
     S_feature       complement(1296555..1296757)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1409579_1409781_c"
                     /HighExp="Cold, GM 25, GM 10, GM 45, GM 15, GM-0.2,
                     GM-0.1, GM 5, GM 90, Glu"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigD"
                     /TUshortPSig=1
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S479"
     promotor_-10    complement(1296746..1296764)
                     /Source="Nicolas_upshift_promotors"
                     /id="U1084"
                     /multdbtbs="-"
                     /comp="M10"
                     /sig="SigD"
                     /pcomp=1
                     /psig=1
                     /xcortree=2819
                     /SigmaFactorBS="agatctccctcgtatttctatcgttttgaaggCTGAAACTct
                     gcggttaagcaGCCGATAATAAAGAGAGTCaacaagactggaacacacgatacggggg
                     g"
                     /listShort="S479, ykoW"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(1296757)
                     /Source="Nicolas_upshifts"
                     /id="U1084"
                     /multdbtbs="-"
                     /comp="M10"
                     /sig="SigD"
                     /pcomp=1
                     /psig=1
                     /xcortree=2819
                     /SigmaFactorBS="agatctccctcgtatttctatcgttttgaaggCTGAAACTct
                     gcggttaagcaGCCGATAATAAAGAGAGTCaacaagactggaacacacgatacggggg
                     g"
                     /listShort="S479, ykoW"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(1296778..1296785)
                     /Source="Nicolas_upshift_promotors"
                     /id="U1084"
                     /multdbtbs="-"
                     /comp="M10"
                     /sig="SigD"
                     /pcomp=1
                     /psig=1
                     /xcortree=2819
                     /SigmaFactorBS="agatctccctcgtatttctatcgttttgaaggCTGAAACTct
                     gcggttaagcaGCCGATAATAAAGAGAGTCaacaagactggaacacacgatacggggg
                     g"
                     /listShort="S479, ykoW"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-35    1296824..1296831
                     /Source="Nicolas_upshift_promotors"
                     /id="U1085"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.432567432567433"
                     /psig="0.999000999001"
                     /xcortree=1761
                     /SigmaFactorBS="atagaaatacgagggagatctatttttAGTTCAACtgaccgt
                     gaaaaaTGTGTTAAAATCATCTTGATgttttccgaaaagagaaaaatgtatgatacat
                     a"
                     /listShort="ykoX, ykoY"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    1296845..1296864
                     /Source="Nicolas_upshift_promotors"
                     /id="U1085"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.432567432567433"
                     /psig="0.999000999001"
                     /xcortree=1761
                     /SigmaFactorBS="atagaaatacgagggagatctatttttAGTTCAACtgaccgt
                     gaaaaaTGTGTTAAAATCATCTTGATgttttccgaaaagagaaaaatgtatgatacat
                     a"
                     /listShort="ykoX, ykoY"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        1296857
                     /Source="Nicolas_upshifts"
                     /id="U1085"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.432567432567433"
                     /psig="0.999000999001"
                     /xcortree=1761
                     /SigmaFactorBS="atagaaatacgagggagatctatttttAGTTCAACtgaccgt
                     gaaaaaTGTGTTAAAATCATCTTGATgttttccgaaaagagaaaaatgtatgatacat
                     a"
                     /listShort="ykoX, ykoY"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             1296888..1297553
                     /gene="ykoX"
                     /locus_tag="BSU_13430"
                     /old_locus_tag="BSU13430"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 15849754, 16850406,
                     23687963; Product type m: membrane component"
                     /codon_start=1
                     /transl_table=11
                     /product="putative integral membrane protein"
                     /protein_id="NP_389226.1"
                     /db_xref="EnsemblGenomes-Gn:BSU13430"
                     /db_xref="EnsemblGenomes-Tr:CAB13200"
                     /db_xref="GOA:O34908"
                     /db_xref="InterPro:IPR032816"
                     /db_xref="SubtiList:BG13267"
                     /db_xref="UniProtKB/Swiss-Prot:O34908"
                     /translation="MIHKHETRELVAIEELVMSWIEAFKSLSYFGIFLALSIEFIPAE
                     VVLPLAGYWVSKGDMTLAGVVLAGSLGGVAGPLTLYWIGRYGGRPFLERFGKYLFIKP
                     EALDKSDNFFKKHGGFVAFSGRFLPGIRTLISIPCGIAKMNVWVFSLYTFIAMLPITF
                     VYVYLGVKLGENWKAVGSILDQYMLPIGIAILALFLLYLLMKKRKKRTHSEQLSVFLK
                     NKR*"
                     /label="ykoX CDS"
     gene            1296888..1297553
                     /gene="ykoX"
                     /locus_tag="BSU_13430"
                     /old_locus_tag="BSU13430"
                     /label="ykoX gene"
     promotor_-10    complement(1297422..1297441)
                     /Source="Nicolas_upshift_promotors"
                     /id="U1086"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp="0.998001998001998"
                     /psig="0.998001998001998"
                     /xcortree=1257
                     /SigmaFactorBS="cctctttttcatcagtaagtagagcaggaacagcgCCAAAAT
                     CGCtatcccgatcggaAGCATATATTGATCAAGAATagagccgactgccttccaattt
                     t"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(1297439)
                     /Source="Nicolas_upshifts"
                     /id="U1086"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp="0.998001998001998"
                     /psig="0.998001998001998"
                     /xcortree=1257
                     /SigmaFactorBS="cctctttttcatcagtaagtagagcaggaacagcgCCAAAAT
                     CGCtatcccgatcggaAGCATATATTGATCAAGAATagagccgactgccttccaattt
                     t"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(1297455..1297464)
                     /Source="Nicolas_upshift_promotors"
                     /id="U1086"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp="0.998001998001998"
                     /psig="0.998001998001998"
                     /xcortree=1257
                     /SigmaFactorBS="cctctttttcatcagtaagtagagcaggaacagcgCCAAAAT
                     CGCtatcccgatcggaAGCATATATTGATCAAGAATagagccgactgccttccaattt
                     t"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-35    1297548..1297555
                     /Source="Nicolas_upshift_promotors"
                     /id="U1087"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.952047952047952"
                     /psig=1
                     /xcortree=600
                     /SigmaFactorBS="attatctgtatttttgaaaaataaaCGTTGACAaatcactgc
                     gctgcGCATATTATTGACGTATAAAatcatatttcttgaaatcccaaaggggagtagc
                     g"
                     /listShort="ykoY"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    1297570..1297589
                     /Source="Nicolas_upshift_promotors"
                     /id="U1087"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.952047952047952"
                     /psig=1
                     /xcortree=600
                     /SigmaFactorBS="attatctgtatttttgaaaaataaaCGTTGACAaatcactgc
                     gctgcGCATATTATTGACGTATAAAatcatatttcttgaaatcccaaaggggagtagc
                     g"
                     /listShort="ykoY"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        1297583
                     /Source="Nicolas_upshifts"
                     /id="U1087"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.952047952047952"
                     /psig=1
                     /xcortree=600
                     /SigmaFactorBS="attatctgtatttttgaaaaataaaCGTTGACAaatcactgc
                     gctgcGCATATTATTGACGTATAAAatcatatttcttgaaatcccaaaggggagtagc
                     g"
                     /listShort="ykoY"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     misc_RNA        1297609..1297742
                     /gene="mnrW"
                     /locus_tag="BSU_misc_RNA_87"
                     /product="manganese ion riboswitch"
                     /experiment="publication(s) with functional evidences,
                     PMID:25794618, 25794619"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 25794618, 25794619;
                     Product type n: RNA"
                     /function="16.12: Sense"
                     /function="16.3: Control"
                     /label="mnrW RNA"
     gene            1297609..1297742
                     /gene="mnrW"
                     /locus_tag="BSU_misc_RNA_87"
                     /label="mnrW gene"
     CDS             1297630..1298604
                     /gene="ykoY"
                     /locus_tag="BSU_13440"
                     /old_locus_tag="BSU13440"
                     /function="16.1: Circulate"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 15096624, 15849754,
                     16850406, 25794618, 25794619; Product type t :
                     transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="putative manganese-related ion transporter"
                     /protein_id="NP_389227.1"
                     /db_xref="EnsemblGenomes-Gn:BSU13440"
                     /db_xref="EnsemblGenomes-Tr:CAB13201"
                     /db_xref="GOA:O34997"
                     /db_xref="InterPro:IPR005496"
                     /db_xref="InterPro:IPR022493"
                     /db_xref="InterPro:IPR036259"
                     /db_xref="SubtiList:BG13268"
                     /db_xref="UniProtKB/Swiss-Prot:O34997"
                     /translation="MYSGNKVVISWIVSIGFVGMPEFMSSKTFALCRQRSFLHGPAGI
                     RSDEEKENNFFGRVSFMDAALLLEYGWVLLVLIGLEGILAADNALVMAVMVKHLPEEK
                     RKKALFYGLAGAFVLRFGSLFAISFLVNVWQVQAIGAIYLLYISASHLLKRYVFKKED
                     THKETKQSGFWPTVLKVELADIAFAVDSILAAVALAVTLPGTSLPKIGGLDGGQFLVI
                     LAGGIIGLVIMRFAASMFVKLLKERPSLETAAFVIVGWVGVKLALYTLAHRDIAVVSE
                     HFIHSGTWKLIFWGVLAAIAVCGWFMSGGKKQPEGAQNEQKNSTRERA*"
                     /label="ykoY CDS"
     gene            1297630..1298604
                     /gene="ykoY"
                     /locus_tag="BSU_13440"
                     /old_locus_tag="BSU13440"
                     /label="ykoY gene"
     downshifts      1297693
                     /Source="Nicolas_upshifts"
                     /id="D736"
                     /incds=1
                     /nref=38
                     /ntot=211
                     /MaxReadThrough="5.00041"
                     /MaxDrop="4.46498"
                     /score="15.8563987"
                     /energy="-15"
                     /TU="U1085,U1087"
                     /idTUdmin="U1085"
                     /TUdmin="-902"
                     /isTUend="FALSE"
                     /label="downshifts"
     downshifts      1298592
                     /Source="Nicolas_upshifts"
                     /id="D737"
                     /incds=0
                     /nref=16
                     /ntot=175
                     /MaxReadThrough="2.59801"
                     /MaxDrop="4.20782"
                     /score="24.4740487"
                     /energy="-13.7"
                     /TU="NA"
                     /idTUdmin="U1085"
                     /TUdmin="-3"
                     /isTUend="TRUE"
                     /label="downshifts"
     promotor_-35    1298714..1298722
                     /Source="Nicolas_upshift_promotors"
                     /id="U1088"
                     /multdbtbs="SigI"
                     /comp="M2"
                     /sig="SigI"
                     /pcomp="0.997002997002997"
                     /psig="0.997002997002997"
                     /xcortree=1768
                     /SigmaFactorBS="atctttgttacaaaaaacacgcataaaaCCCCCTTAAttctt
                     tagaaaggCACGAAATCatgtatagaacgtcagaatggtttgtcataattgagacatt
                     g"
                     /listShort="S480, sigI, rsgI, S481"
                     /listLong="htpX"
                     /label="promotor_-35"
     promotor_-10    1298736..1298744
                     /Source="Nicolas_upshift_promotors"
                     /id="U1088"
                     /multdbtbs="SigI"
                     /comp="M2"
                     /sig="SigI"
                     /pcomp="0.997002997002997"
                     /psig="0.997002997002997"
                     /xcortree=1768
                     /SigmaFactorBS="atctttgttacaaaaaacacgcataaaaCCCCCTTAAttctt
                     tagaaaggCACGAAATCatgtatagaacgtcagaatggtttgtcataattgagacatt
                     g"
                     /listShort="S480, sigI, rsgI, S481"
                     /listLong="htpX"
                     /label="promotor_-10"
     upshifts        1298746
                     /Source="Nicolas_upshifts"
                     /id="U1088"
                     /multdbtbs="SigI"
                     /comp="M2"
                     /sig="SigI"
                     /pcomp="0.997002997002997"
                     /psig="0.997002997002997"
                     /xcortree=1768
                     /SigmaFactorBS="atctttgttacaaaaaacacgcataaaaCCCCCTTAAttctt
                     tagaaaggCACGAAATCatgtatagaacgtcagaatggtttgtcataattgagacatt
                     g"
                     /listShort="S480, sigI, rsgI, S481"
                     /listLong="htpX"
                     /label="upshifts"
     S_feature       1298749..1298835
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1411773_1411859"
                     /HighExp="M9-stat, T1.30H, T1.0H, T0.30H, T2.0H, T2.30H,
                     HiTm, M0t90, T3.0H, HiOs"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="0.29969800000000002"
                     /TUshortSig="SigI"
                     /TUshortPSig="0.997"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S480"
     promotor_-35    1298808..1298815
                     /Source="Nicolas_upshift_promotors"
                     /id="U1089"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.809190809190809"
                     /psig=1
                     /xcortree=1635
                     /SigmaFactorBS="tgagacattggaaatcaatatttctttttctCCTTTGCGaat
                     ccctatcaaaTTAGCTATCATTAATGAGTAgttatagggaggaactgaggtgaaacca
                     g"
                     /listShort="sigI, rsgI, S481"
                     /listLong="htpX"
                     /label="promotor_-35"
     promotor_-10    1298829..1298848
                     /Source="Nicolas_upshift_promotors"
                     /id="U1089"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.809190809190809"
                     /psig=1
                     /xcortree=1635
                     /SigmaFactorBS="tgagacattggaaatcaatatttctttttctCCTTTGCGaat
                     ccctatcaaaTTAGCTATCATTAATGAGTAgttatagggaggaactgaggtgaaacca
                     g"
                     /listShort="sigI, rsgI, S481"
                     /listLong="htpX"
                     /label="promotor_-10"
     upshifts        1298837
                     /Source="Nicolas_upshifts"
                     /id="U1089"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.809190809190809"
                     /psig=1
                     /xcortree=1635
                     /SigmaFactorBS="tgagacattggaaatcaatatttctttttctCCTTTGCGaat
                     ccctatcaaaTTAGCTATCATTAATGAGTAgttatagggaggaactgaggtgaaacca
                     g"
                     /listShort="sigI, rsgI, S481"
                     /listLong="htpX"
                     /label="upshifts"
     CDS             1298868..1299623
                     /gene="sigI"
                     /locus_tag="BSU_13450"
                     /old_locus_tag="BSU13450"
                     /function="16.3: Control"
                     /experiment="publication(s) with functional evidences,
                     PMID:11157964, 12682299, 17185538, 18156261, 21541672,
                     24125693, 28333276"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 11157964, 12682299,
                     17185538, 18156261, 21541672, 24125693, 28333276; Product
                     type f: factor"
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase sigma factor (heat stress
                     responsive)"
                     /protein_id="NP_389228.1"
                     /db_xref="EnsemblGenomes-Gn:BSU13450"
                     /db_xref="EnsemblGenomes-Tr:CAB13218"
                     /db_xref="GOA:O31654"
                     /db_xref="InterPro:IPR007627"
                     /db_xref="InterPro:IPR013325"
                     /db_xref="InterPro:IPR014244"
                     /db_xref="InterPro:IPR014284"
                     /db_xref="SubtiList:BG13269"
                     /db_xref="UniProtKB/Swiss-Prot:O31654"
                     /translation="MKPVLSLLFKLGKKKQTLEKAVESIQKGNKDLQNELIQQYKPFI
                     AKTVSSVCKRYIDEKDDEFSIGLIAFNEAIEKYSPEKGNSLLAFAELIIKRKVIDYIR
                     KEARSAQNINIDLQEGDDQESSQSLIEAELSIDEYRRQIEQEQRREEILYFQKQLKDY
                     GLSFKELLENSPKHTDARQNAIKVAMTLVEHEELAAILYTKKQLPVKQLEQLVSVSRK
                     TIERNRKYIIAMCIIITGDYIYLKDYLKGVLHS*"
                     /label="sigI CDS"
     gene            1298868..1299623
                     /gene="sigI"
                     /locus_tag="BSU_13450"
                     /old_locus_tag="BSU13450"
                     /label="sigI gene"
     CDS             1299620..1300765
                     /gene="rsgI"
                     /locus_tag="BSU_13460"
                     /old_locus_tag="BSU13460"
                     /function="16.3: Control"
                     /experiment="publication(s) with functional evidences,
                     PMID:17185538, 23199363, 28333276"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 17185538, 23199363,
                     28333276; Product type f: factor"
                     /codon_start=1
                     /transl_table=11
                     /product="sigmaI modulating factor"
                     /protein_id="NP_389229.1"
                     /db_xref="EnsemblGenomes-Gn:BSU13460"
                     /db_xref="EnsemblGenomes-Tr:CAB13219"
                     /db_xref="GOA:O31655"
                     /db_xref="InterPro:IPR024449"
                     /db_xref="SubtiList:BG13272"
                     /db_xref="UniProtKB/Swiss-Prot:O31655"
                     /translation="MRRGIIVEKNKKFVTLLTPDGQFLKAKNDRHSYEIGEEIMLPSE
                     TRMGRRASFFDFFKLRPFKMGIFTMTAIMLFIFIVLPVFSNNKAYAYMTIDINPSVEM
                     ALNSDYEVIELTPLNDEGQKVVNDIDDWEKTDFKKVIDDIITDCSEHGYVKKSKEILI
                     STVYENTEDNTYKKAVKKQLNDVTEKYKTTYRMESLESDMQTREKAKKEGVSTGSYIK
                     SNEKNDNKDIKDDSSKPSGEEDQKSDENEDENTDQTDTQDSKQGDNEQLNDADSGDQK
                     EEKADDQIDDSDKDKKIKESDENTNTEKDGDHEQTPIQDPQDKGNENNGADKGQSQYH
                     RDWNNGEQGKNRSSSRRDNASDRRNPNGYSSDNHSAKNEDSPSAPGE*"
                     /label="rsgI CDS"
     gene            1299620..1300765
                     /gene="rsgI"
                     /locus_tag="BSU_13460"
                     /old_locus_tag="BSU13460"
                     /label="rsgI gene"
     S_feature       1300766..1301925
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1413790_1414949"
                     /HighExp="HiTm, G135, G180, C30, G150, Cold, S8, MG 25,
                     H2O2, Lbstat"
                     /AntisenseName="ykrK"
                     /AntisenseCor="0.122248209149143"
                     /AntisenseRegPval="-1.3"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA, SigI"
                     /TUshortPSig="1, 0.997"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S481"
     CDS             complement(1300776..1300970)
                     /gene="sspD"
                     /locus_tag="BSU_13470"
                     /old_locus_tag="BSU13470"
                     /function="16.5: Explore"
                     /function="16.8: Protect"
                     /function="16.13: Shape"
                     /experiment="publication(s) with functional evidences,
                     PMID:3009397, 3112127, 3121585, 9852018"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 3009397, 3112127,
                     3121585, 9852018; Product type f: factor"
                     /codon_start=1
                     /transl_table=11
                     /product="small acid-soluble spore protein
                     (alpha/beta-type SASP)"
                     /protein_id="NP_389230.1"
                     /db_xref="EnsemblGenomes-Gn:BSU13470"
                     /db_xref="EnsemblGenomes-Tr:CAB13220"
                     /db_xref="GOA:P04833"
                     /db_xref="InterPro:IPR001448"
                     /db_xref="InterPro:IPR018126"
                     /db_xref="SubtiList:BG10788"
                     /db_xref="UniProtKB/Swiss-Prot:P04833"
                     /translation="MASRNKLVVPGVEQALDQFKLEVAQEFGVNLGSDTVARANGSVG
                     GEMTKRLVQQAQSQLNGTTK*"
                     /label="sspD CDS"
     gene            complement(1300776..1300970)
                     /gene="sspD"
                     /locus_tag="BSU_13470"
                     /old_locus_tag="BSU13470"
                     /label="sspD gene"
     downshifts      complement(1300783)
                     /Source="Nicolas_upshifts"
                     /id="D738"
                     /incds=0
                     /nref=24
                     /ntot=36
                     /MaxReadThrough="1.67859"
                     /MaxDrop="4.68215"
                     /score="41.3727153"
                     /energy="-15.2"
                     /TU="NA"
                     /idTUdmin="U1090"
                     /TUdmin=0
                     /isTUend="TRUE"
                     /label="downshifts"
     promotor_-10    complement(1301013..1301024)
                     /Source="Nicolas_upshift_promotors"
                     /id="U1090"
                     /multdbtbs="SigG"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp="0.999000999001"
                     /psig="0.999000999001"
                     /xcortree=868
                     /SigmaFactorBS="cagaggccggggttttatttttctccacaacaattgccAGCA
                     TAAataaaccccgtataTTTCAAACTAAAtacgcgttaagaatttctttatcgaaaaa
                     g"
                     /listShort="sspD"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(1301023)
                     /Source="Nicolas_upshifts"
                     /id="U1090"
                     /multdbtbs="SigG"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp="0.999000999001"
                     /psig="0.999000999001"
                     /xcortree=868
                     /SigmaFactorBS="cagaggccggggttttatttttctccacaacaattgccAGCA
                     TAAataaaccccgtataTTTCAAACTAAAtacgcgttaagaatttctttatcgaaaaa
                     g"
                     /listShort="sspD"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(1301039..1301045)
                     /Source="Nicolas_upshift_promotors"
                     /id="U1090"
                     /multdbtbs="SigG"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp="0.999000999001"
                     /psig="0.999000999001"
                     /xcortree=868
                     /SigmaFactorBS="cagaggccggggttttatttttctccacaacaattgccAGCA
                     TAAataaaccccgtataTTTCAAACTAAAtacgcgttaagaatttctttatcgaaaaa
                     g"
                     /listShort="sspD"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             complement(1301101..1301802)
                     /gene="htpK"
                     /locus_tag="BSU_13480"
                     /old_locus_tag="BSU13480"
                     /function="16.3: Control"
                     /experiment="publication(s) with functional evidences,
                     PMID:22447908, 23042994"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 22447908, 23042994;
                     Product type r: regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="regulator of quality control"
                     /protein_id="NP_389231.1"
                     /db_xref="EnsemblGenomes-Gn:BSU13480"
                     /db_xref="EnsemblGenomes-Tr:CAB13221"
                     /db_xref="InterPro:IPR014975"
                     /db_xref="SubtiList:BG13273"
                     /db_xref="UniProtKB/Swiss-Prot:O31656"
                     /translation="MNIFKLSRTDMVRLLYSLKGQGEHSPLDILVQSANMSAEKAANH
                     LEIPEFLTRYERKKQKKEYGLSTNEIVELGNLCELTSLKSTAIQNWVKRDIKDLIGHP
                     ELGKKYSIEQAVILLIVRDLKSIYDFEHIRAILKVAFNTISDRSDDVISPIAYYESCA
                     YVLDAIHHQDTPSMKESNLQEIAEQETERLRHRFEELNDSQWLKIRQIIAITVLSILT
                     FHIQATAHKMTADIL*"
                     /label="htpK CDS"
     gene            complement(1301101..1301802)
                     /gene="htpK"
                     /locus_tag="BSU_13480"
                     /old_locus_tag="BSU13480"
                     /label="htpK gene"
     downshifts      complement(1301135)
                     /Source="Nicolas_upshifts"
                     /id="D739"
                     /incds=0
                     /nref=174
                     /ntot=231
                     /MaxReadThrough="2.96889"
                     /MaxDrop="5.30355"
                     /score="41.3727153"
                     /energy="-15.2"
                     /TU="NA"
                     /idTUdmin="U1091"
                     /TUdmin=0
                     /isTUend="TRUE"
                     /label="downshifts"
     S_feature       complement(1301803..1301883)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1414827_1414907_c"
                     /HighExp="LBGtran, dia0, LBGexp, Lbexp, Oxctl, G180,
                     M0t45, C90, Paraq, Mt0"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.998"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S482"
     promotor_-10    complement(1301875..1301894)
                     /Source="Nicolas_upshift_promotors"
                     /id="U1091"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.911088911088911"
                     /psig="0.998001998001998"
                     /xcortree=2572
                     /SigmaFactorBS="aacccgtatatttaaattataaaacatcCATTTGAAaatgca
                     aggaattCGACGTATGATGTTAATGTAatttgctgacgcttgaattttgaacttatac
                     a"
                     /listShort="S482, ykrK"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(1301883)
                     /Source="Nicolas_upshifts"
                     /id="U1091"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.911088911088911"
                     /psig="0.998001998001998"
                     /xcortree=2572
                     /SigmaFactorBS="aacccgtatatttaaattataaaacatcCATTTGAAaatgca
                     aggaattCGACGTATGATGTTAATGTAatttgctgacgcttgaattttgaacttatac
                     a"
                     /listShort="S482, ykrK"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    1301899..1301906
                     /Source="Nicolas_upshift_promotors"
                     /id="U1092"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.898101898101898"
                     /psig=1
                     /xcortree=1759
                     /SigmaFactorBS="cagcaaattacattaacatcatacgtcgaattCCTTGCATtt
                     tcaaatggatgTTTTATAATTTAAATATACGggttcttttgaacttaaaataacggag
                     g"
                     /listShort="htpX"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-35    complement(1301908..1301915)
                     /Source="Nicolas_upshift_promotors"
                     /id="U1091"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.911088911088911"
                     /psig="0.998001998001998"
                     /xcortree=2572
                     /SigmaFactorBS="aacccgtatatttaaattataaaacatcCATTTGAAaatgca
                     aggaattCGACGTATGATGTTAATGTAatttgctgacgcttgaattttgaacttatac
                     a"
                     /listShort="S482, ykrK"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    1301920..1301939
                     /Source="Nicolas_upshift_promotors"
                     /id="U1092"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.898101898101898"
                     /psig=1
                     /xcortree=1759
                     /SigmaFactorBS="cagcaaattacattaacatcatacgtcgaattCCTTGCATtt
                     tcaaatggatgTTTTATAATTTAAATATACGggttcttttgaacttaaaataacggag
                     g"
                     /listShort="htpX"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        1301927
                     /Source="Nicolas_upshifts"
                     /id="U1092"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.898101898101898"
                     /psig=1
                     /xcortree=1759
                     /SigmaFactorBS="cagcaaattacattaacatcatacgtcgaattCCTTGCATtt
                     tcaaatggatgTTTTATAATTTAAATATACGggttcttttgaacttaaaataacggag
                     g"
                     /listShort="htpX"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             1301973..1302869
                     /gene="htpX"
                     /locus_tag="BSU_13490"
                     /old_locus_tag="BSU13490"
                     /function="16.6: Maintain"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 2a: Function from experimental evidences
                     in other organisms; PubMedId: 11860552, 12081643,
                     16076848, 16573693, 22447908, 22720735; Product type e :
                     enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="membrane protease"
                     /protein_id="NP_389232.1"
                     /db_xref="EnsemblGenomes-Gn:BSU13490"
                     /db_xref="EnsemblGenomes-Tr:CAB13222"
                     /db_xref="GOA:O31657"
                     /db_xref="InterPro:IPR001915"
                     /db_xref="InterPro:IPR022919"
                     /db_xref="SubtiList:BG13274"
                     /db_xref="UniProtKB/Swiss-Prot:O31657"
                     /translation="MAKRIFLFILTNILVLTTIGIVLSVLSSVTGVGTYFTADGGIDP
                     MALLVFSLVVGFVGSFTSLAISRWMAKTMMGVRVLNPKKHSLSYEEQQLVDRVHRLSR
                     SAGLTKMPEVGIYRSPEVNAFATGPSKRRSLVAVSSGLLEQMDDAAVEGVLAHEVAHI
                     TNGDMVTMTLLQGIVNTFVVFLSRIAAWIASRFVKEDLAPIVHFIAMIIFQIVFSILG
                     SLVVFAYSRHREFHADRGGADLAGKDKMIHALRTLKSYSSRILEDDQTAVQTLKINGK
                     KRSSLFSTHPDLDERIRRLEAK*"
                     /label="htpX CDS"
     gene            1301973..1302869
                     /gene="htpX"
                     /locus_tag="BSU_13490"
                     /old_locus_tag="BSU13490"
                     /label="htpX gene"
     downshifts      1302863
                     /Source="Nicolas_upshifts"
                     /id="D740"
                     /incds=0
                     /nref=203
                     /ntot=268
                     /MaxReadThrough="3.02778"
                     /MaxDrop="6.27746"
                     /score="38.5173589"
                     /energy="-13.4"
                     /TU="NA"
                     /idTUdmin="U1092"
                     /TUdmin=0
                     /isTUend="TRUE"
                     /label="downshifts"
     promotor_-35    1302974..1302978
                     /Source="Nicolas_upshift_promotors"
                     /id="U1093"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.617382617382617"
                     /psig="0.994005994005994"
                     /xcortree=2515
                     /SigmaFactorBS="aaaaaataagcaagttaagaaaatgtttcgtaaaagCCTTTa
                     aaaatggacctaatATCTTTAGAATAATTACCGTacttaaaaagagaggcagaaggat
                     t"
                     /listShort="ktrD"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    1302994..1303013
                     /Source="Nicolas_upshift_promotors"
                     /id="U1093"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.617382617382617"
                     /psig="0.994005994005994"
                     /xcortree=2515
                     /SigmaFactorBS="aaaaaataagcaagttaagaaaatgtttcgtaaaagCCTTTa
                     aaaatggacctaatATCTTTAGAATAATTACCGTacttaaaaagagaggcagaaggat
                     t"
                     /listShort="ktrD"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        1302998
                     /Source="Nicolas_upshifts"
                     /id="U1093"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.617382617382617"
                     /psig="0.994005994005994"
                     /xcortree=2515
                     /SigmaFactorBS="aaaaaataagcaagttaagaaaatgtttcgtaaaagCCTTTa
                     aaaatggacctaatATCTTTAGAATAATTACCGTacttaaaaagagaggcagaaggat
                     t"
                     /listShort="ktrD"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             1303043..1304392
                     /gene="ktrD"
                     /locus_tag="BSU_13500"
                     /old_locus_tag="BSU13500"
                     /EC_number="3.6.3.12"
                     /function="16.1: Circulate"
                     /experiment="publication(s) with functional evidences,
                     PMID:12562800, 15096624, 15849754, 16850406, 23963175"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 12562800, 15096624,
                     15849754, 16850406, 23963175; Product type t :
                     transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="K+-transporting ATPase"
                     /protein_id="NP_389233.1"
                     /db_xref="EnsemblGenomes-Gn:BSU13500"
                     /db_xref="EnsemblGenomes-Tr:CAB13223"
                     /db_xref="GOA:O31658"
                     /db_xref="InterPro:IPR003445"
                     /db_xref="SubtiList:BG13275"
                     /db_xref="UniProtKB/Swiss-Prot:O31658"
                     /translation="MRLKFGKLIQALSPAQLIALYYFLAVTVAVILLSLPAAHKPGAD
                     WTFIDALFTAVSSVSVTGLTVVDTADTFSTIGIFILAFVLQFGGIGIMTLGTFIWLIM
                     GKRIGLKERKLIMVDQNQSQFSGIVNLMKQVLFLILWIEFFGGLILGTYFLTYYDSYQ
                     EAYLHGFFASISATTNGGFDITGNSMIPFRHDYFVQFITMLLIIFGAIGFPVLVEVKD
                     FLFSKHRRYPFTLFTKITTITFGSLVLFGAIGIFALEANHAFAGKSWHDILFLSLFQS
                     TATRSGGLATIDISQLSDSTLFFICALMFIGASPSSVGGGIRTTTFALNLLALFHFAR
                     GNKAVKVFKRELHPADLMKSLVVTMMAILLVFGATLILTITEKHSLLELLFEVCSAFG
                     TTGLSLGITADLSSVGKCVIMIVMFIGRIGILTFLYLIGRKEIEANYHYPKERVIIG*
                     "
                     /label="ktrD CDS"
     gene            1303043..1304392
                     /gene="ktrD"
                     /locus_tag="BSU_13500"
                     /old_locus_tag="BSU13500"
                     /label="ktrD gene"
     downshifts      1304380
                     /Source="Nicolas_upshifts"
                     /id="D741"
                     /incds=0
                     /nref=30
                     /ntot=182
                     /MaxReadThrough="0.838800000000001"
                     /MaxDrop="4.37717"
                     /score="20.0478288"
                     /energy="-10.7"
                     /TU="NA"
                     /idTUdmin="U1093"
                     /TUdmin="-1"
                     /isTUend="TRUE"
                     /label="downshifts"
     promotor_-35    1304441..1304447
                     /Source="Nicolas_upshift_promotors"
                     /id="U1094"
                     /multdbtbs="-"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp=1
                     /psig=1
                     /xcortree=834
                     /SigmaFactorBS="tttgcggtgttttttgattaccaaaaaaaagaTGTGTGCctc
                     ctgttcagttGGAGAACCTAACtccgacaggtgcaatttacgctcctgcatcttaaaa
                     t"
                     /listShort="S483, ykzP, ykzE"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    1304461..1304472
                     /Source="Nicolas_upshift_promotors"
                     /id="U1094"
                     /multdbtbs="-"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp=1
                     /psig=1
                     /xcortree=834
                     /SigmaFactorBS="tttgcggtgttttttgattaccaaaaaaaagaTGTGTGCctc
                     ctgttcagttGGAGAACCTAACtccgacaggtgcaatttacgctcctgcatcttaaaa
                     t"
                     /listShort="S483, ykzP, ykzE"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     S_feature       1304469..1304536
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1417493_1417560"
                     /HighExp="S8, S6, S7, S5, ferm, nit, BT, B36, Pyr, G/S"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigGF"
                     /TUshortPSig=1
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S483"
     upshifts        1304469
                     /Source="Nicolas_upshifts"
                     /id="U1094"
                     /multdbtbs="-"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp=1
                     /psig=1
                     /xcortree=834
                     /SigmaFactorBS="tttgcggtgttttttgattaccaaaaaaaagaTGTGTGCctc
                     ctgttcagttGGAGAACCTAACtccgacaggtgcaatttacgctcctgcatcttaaaa
                     t"
                     /listShort="S483, ykzP, ykzE"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             1304537..1304692
                     /gene="ykzP"
                     /locus_tag="BSU_13509"
                     /old_locus_tag="BSU13509"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved protein of unknown function"
                     /protein_id="YP_003097718.1"
                     /db_xref="EnsemblGenomes-Gn:BSU13509"
                     /db_xref="EnsemblGenomes-Tr:CAX52609"
                     /db_xref="UniProtKB/Swiss-Prot:C0H402"
                     /translation="MKRKAEVNEAIKNNNTPTESMDPNSYKTQYHDDPNFRGANRNSK
                     QGQQGGM*"
                     /label="ykzP CDS"
     gene            1304537..1304692
                     /gene="ykzP"
                     /locus_tag="BSU_13509"
                     /old_locus_tag="BSU13509"
                     /label="ykzP gene"
     CDS             1304695..1304871
                     /gene="ykzE"
                     /locus_tag="BSU_13510"
                     /old_locus_tag="BSU13510"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms; PubMedId: 17322312"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved protein of unknown function"
                     /protein_id="NP_389234.1"
                     /db_xref="EnsemblGenomes-Gn:BSU13510"
                     /db_xref="EnsemblGenomes-Tr:CAB13224"
                     /db_xref="SubtiList:BG13333"
                     /db_xref="UniProtKB/Swiss-Prot:O31659"
                     /translation="MKKNRHSRDMQNHKKPMNKKVLEEEFSSELGDYNAGKIIETLEV
                     TKPEKKKEKNKKQQ*"
                     /label="ykzE CDS"
     gene            1304695..1304871
                     /gene="ykzE"
                     /locus_tag="BSU_13510"
                     /old_locus_tag="BSU13510"
                     /label="ykzE gene"
     promotor_no_box 1304761..1304861
                     /Source="Nicolas_upshift_promotors"
                     /id="U1095"
                     /multdbtbs="-"
                     /comp="M21"
                     /sig="Sig-"
                     /pcomp="0.683316683316683"
                     /psig="0.005994005994006"
                     /xcortree=278
                     /SigmaFactorBS="gaggaagaattctcaagtgaactcggggattacaatgccgga
                     aagatcatcgaaacgctggaagtcaccaagcctgaaaagaaaaaagaaaaaaacaaaa
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_no_box"
     upshifts        1304821
                     /Source="Nicolas_upshifts"
                     /id="U1095"
                     /multdbtbs="-"
                     /comp="M21"
                     /sig="Sig-"
                     /pcomp="0.683316683316683"
                     /psig="0.005994005994006"
                     /xcortree=278
                     /SigmaFactorBS="gaggaagaattctcaagtgaactcggggattacaatgccgga
                     aagatcatcgaaacgctggaagtcaccaagcctgaaaagaaaaaagaaaaaaacaaaa
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     downshifts      1304867
                     /Source="Nicolas_upshifts"
                     /id="D742"
                     /incds=0
                     /nref=56
                     /ntot=112
                     /MaxReadThrough="2.40289"
                     /MaxDrop="8.38761"
                     /score="26.5107018"
                     /energy="-19.7"
                     /TU="NA"
                     /idTUdmin="U1094"
                     /TUdmin=2
                     /isTUend="TRUE"
                     /label="downshifts"
     CDS             complement(1304914..1305936)
                     /gene="ykrP"
                     /locus_tag="BSU_13520"
                     /old_locus_tag="BSU13520"
                     /EC_number="2.3.-.-"
                     /function="16.6: Maintain"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 15849754, 16850406;
                     Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative integral membrane protein; putative
                     acyltransferase"
                     /protein_id="NP_389235.1"
                     /db_xref="EnsemblGenomes-Gn:BSU13520"
                     /db_xref="EnsemblGenomes-Tr:CAB13225"
                     /db_xref="GOA:O31660"
                     /db_xref="InterPro:IPR002656"
                     /db_xref="SubtiList:BG13276"
                     /db_xref="UniProtKB/Swiss-Prot:O31660"
                     /translation="MSKSRDSYFDNAKFLLIFLVVFGHILRSFINDNHFMLYLYKFIY
                     TFHMPAFILVSGYFAKGFKRAGYVKKLAVKLIIPYLIFQIIYSVFYYIMQDESMANVN
                     PIDPQWSLWFLVSLFFWNLLLYPFSKLSKQWALFVSCGIAVLIGYLDFVSSTLSLSRT
                     FVFLPMFLVGFYLNKHHFDLLRSKRGKQIALGVLAAVFVICWGIDFDYSFLFGSKPYS
                     SFGDVTLVSGLSRIGWYVLAFGATFSFLALVPQKRYFFTKWGTRTFYVYLLHGFIIKT
                     LRQVGLEDWLTDYQSLVILLLLTAALTSVLSSNFVKTVAQPFIELRMTSLLQFVRGTG
                     KNAYLK*"
                     /label="ykrP CDS"
     gene            complement(1304914..1305936)
                     /gene="ykrP"
                     /locus_tag="BSU_13520"
                     /old_locus_tag="BSU13520"
                     /label="ykrP gene"
     downshifts      complement(1304937)
                     /Source="Nicolas_upshifts"
                     /id="D743"
                     /incds=0
                     /nref=11
                     /ntot=58
                     /MaxReadThrough="2.29259"
                     /MaxDrop="3.64731"
                     /score="30.4184602"
                     /energy="-16.9"
                     /TU="NA"
                     /idTUdmin="U1096"
                     /TUdmin=92
                     /isTUend="FALSE"
                     /label="downshifts"
     promotor_-10    complement(1305981..1306000)
                     /Source="Nicolas_upshift_promotors"
                     /id="U1096"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.816183816183816"
                     /psig="0.987012987012987"
                     /xcortree=580
                     /SigmaFactorBS="ccgtcactttacatcgacctaacaatcagcatttttttaGAT
                     TCCTttttcatctttTATTTTAAAATATGTACCAGcagggaataatctcttagtgact
                     g"
                     /listShort="ykrP"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(1305997)
                     /Source="Nicolas_upshifts"
                     /id="U1096"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.816183816183816"
                     /psig="0.987012987012987"
                     /xcortree=580
                     /SigmaFactorBS="ccgtcactttacatcgacctaacaatcagcatttttttaGAT
                     TCCTttttcatctttTATTTTAAAATATGTACCAGcagggaataatctcttagtgact
                     g"
                     /listShort="ykrP"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(1306012..1306018)
                     /Source="Nicolas_upshift_promotors"
                     /id="U1096"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.816183816183816"
                     /psig="0.987012987012987"
                     /xcortree=580
                     /SigmaFactorBS="ccgtcactttacatcgacctaacaatcagcatttttttaGAT
                     TCCTttttcatctttTATTTTAAAATATGTACCAGcagggaataatctcttagtgact
                     g"
                     /listShort="ykrP"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-35    1306125..1306133
                     /Source="Nicolas_upshift_promotors"
                     /id="U1097"
                     /multdbtbs="-"
                     /comp="M1"
                     /sig="SigH"
                     /pcomp="0.999000999001"
                     /psig="0.999000999001"
                     /xcortree=548
                     /SigmaFactorBS="gtaatgtaatgacgctgaaattttctgaaatttatagggcaa
                     atGAAGGAAGTtcccgcatttTGTAGAAATATTGAGGGATaggttttgaagaaggagt
                     g"
                     /listShort="kinE, ogt, S485"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     upshifts        1306141
                     /Source="Nicolas_upshifts"
                     /id="U1097"
                     /multdbtbs="-"
                     /comp="M1"
                     /sig="SigH"
                     /pcomp="0.999000999001"
                     /psig="0.999000999001"
                     /xcortree=548
                     /SigmaFactorBS="gtaatgtaatgacgctgaaattttctgaaatttatagggcaa
                     atGAAGGAAGTtcccgcatttTGTAGAAATATTGAGGGATaggttttgaagaaggagt
                     g"
                     /listShort="kinE, ogt, S485"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-10    1306144..1306162
                     /Source="Nicolas_upshift_promotors"
                     /id="U1097"
                     /multdbtbs="-"
                     /comp="M1"
                     /sig="SigH"
                     /pcomp="0.999000999001"
                     /psig="0.999000999001"
                     /xcortree=548
                     /SigmaFactorBS="gtaatgtaatgacgctgaaattttctgaaatttatagggcaa
                     atGAAGGAAGTtcccgcatttTGTAGAAATATTGAGGGATaggttttgaagaaggagt
                     g"
                     /listShort="kinE, ogt, S485"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     CDS             1306189..1308405
                     /gene="kinE"
                     /locus_tag="BSU_13530"
                     /old_locus_tag="BSU13530"
                     /function="16.3: Control"
                     /function="16.12: Sense"
                     /experiment="publication(s) with functional evidences,
                     PMID:11069677, 12169614, 16166384, 25701730"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 11069677, 12169614,
                     16166384, 25701730; Product type rc: receptor"
                     /codon_start=1
                     /transl_table=11
                     /product="two-component sensor histidine kinase"
                     /protein_id="NP_389236.1"
                     /db_xref="EnsemblGenomes-Gn:BSU13530"
                     /db_xref="EnsemblGenomes-Tr:CAB13226"
                     /db_xref="GOA:O31661"
                     /db_xref="InterPro:IPR000014"
                     /db_xref="InterPro:IPR003594"
                     /db_xref="InterPro:IPR003661"
                     /db_xref="InterPro:IPR004358"
                     /db_xref="InterPro:IPR005467"
                     /db_xref="InterPro:IPR013767"
                     /db_xref="InterPro:IPR035965"
                     /db_xref="InterPro:IPR036097"
                     /db_xref="InterPro:IPR036890"
                     /db_xref="SubtiList:BG13277"
                     /db_xref="UniProtKB/Swiss-Prot:O31661"
                     /translation="METLGVQTNSELREELNRLKEENARLKKELNQHQVIVNNTLDAI
                     FICDNEMRIVQANEATERMLQVDSEDLKKRSVLDFLFSIPKDELNLSVKKFFKKGFLW
                     KEVPIRLDCGATKYIEFLAKRGIGEDFFFVVMRDISSKKILEREFSMNEQLFKDLFDR
                     AVDGIVLFDKDGGFIDANLSFCKSFEINHNELSHLSLYEFIDSGSRKDFDNIWKALNR
                     KGKAKGELPVKLRSGVQKLFEFTITSNIISGFYMSIMRDITEKRSMELQLFKSEERFR
                     EIFENAMDAIIIWSNDGRIVKANQSACKIFELPMNLLLKRKLCDFLVDSQQKYSITKR
                     KYAKYGEIREELLFQMGNGQFKELEFTSKRTILENQHLTILRNVSDRKRMEKELRESE
                     LKFRKVFNGSMDGNVLFDNQYRIIDANPLASHILGLSHEEIKQHSLLDIISAYEIENL
                     ASPARQINFDEMDNEIPFLLSSGDNRKLEFSFKRNIIQNMNLAIFKDVTERKELEERL
                     RKSDTLHVVGELAAGIAHEIRNPMTALKGFIQLLKGSVEGDYALYFNVITSELKRIES
                     IITEFLILAKPQAIMYEEKHVTQIMRDTIDLLNAQANLSNVQMQLDLIDDIPPIYCEP
                     NQLKQVFINILKNAIEVMPDGGNIFVTIKALDQDHVLISLKDEGIGMTEDKLKRLGEP
                     FYTTKERGTGLGLMVSYKIIEEHQGEIMVESEEGKGTVFHITLPVRQNAEERRNDE*"
                     /label="kinE CDS"
     gene            1306189..1308405
                     /gene="kinE"
                     /locus_tag="BSU_13530"
                     /old_locus_tag="BSU13530"
                     /label="kinE gene"
     S_feature       complement(1308180..1309120)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1421204_1422144_c"
                     /HighExp="Pyr, Glucon, C30, Glu, Mal, M/G, G/S, Heat, Fru,
                     B36"
                     /AntisenseName="ogt"
                     /AntisenseCor="-0.33210294457391598"
                     /AntisenseRegPval="-7.6"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA, SigA"
                     /TUshortPSig="1, 1"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S484"
     promotor_-35    1308258..1308265
                     /Source="Nicolas_upshift_promotors"
                     /id="U1098"
                     /multdbtbs="SigA"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.655344655344655"
                     /psig="0.999000999001"
                     /xcortree=2063
                     /SigmaFactorBS="acttggtgaaccgttttatacgacaaaggaacggggAACTGG
                     ACttgggcttatggtaAGCTATAAAATTATTGAAGAacatcaaggcgagattatggta
                     g"
                     /listShort="ogt, S485"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    1308280..1308299
                     /Source="Nicolas_upshift_promotors"
                     /id="U1098"
                     /multdbtbs="SigA"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.655344655344655"
                     /psig="0.999000999001"
                     /xcortree=2063
                     /SigmaFactorBS="acttggtgaaccgttttatacgacaaaggaacggggAACTGG
                     ACttgggcttatggtaAGCTATAAAATTATTGAAGAacatcaaggcgagattatggta
                     g"
                     /listShort="ogt, S485"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        1308282
                     /Source="Nicolas_upshifts"
                     /id="U1098"
                     /multdbtbs="SigA"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.655344655344655"
                     /psig="0.999000999001"
                     /xcortree=2063
                     /SigmaFactorBS="acttggtgaaccgttttatacgacaaaggaacggggAACTGG
                     ACttgggcttatggtaAGCTATAAAATTATTGAAGAacatcaaggcgagattatggta
                     g"
                     /listShort="ogt, S485"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             1308402..1308899
                     /gene="ogt"
                     /locus_tag="BSU_13540"
                     /old_locus_tag="BSU13540"
                     /EC_number="2.1.1.63"
                     /function="16.6: Maintain"
                     /experiment="publication(s) with functional evidences,
                     PMID:2105461, 2308822, 2359121, 2506524, 7565865"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 2105461, 2308822,
                     2359121, 2506524, 7565865; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="O6-alkylguanine DNA alkyltransferase"
                     /protein_id="NP_389237.1"
                     /db_xref="EnsemblGenomes-Gn:BSU13540"
                     /db_xref="EnsemblGenomes-Tr:CAB13227"
                     /db_xref="GOA:P11742"
                     /db_xref="InterPro:IPR001497"
                     /db_xref="InterPro:IPR008332"
                     /db_xref="InterPro:IPR014048"
                     /db_xref="InterPro:IPR023546"
                     /db_xref="InterPro:IPR036217"
                     /db_xref="InterPro:IPR036388"
                     /db_xref="InterPro:IPR036631"
                     /db_xref="SubtiList:BG10848"
                     /db_xref="UniProtKB/Swiss-Prot:P11742"
                     /translation="MNYYTTAETPLGELIIAEEEDRITRLFLSQEDWVDWKETVQNTE
                     HKETPNLAEAKQQLQEYFAGERKTFSLPLSQKGTPFQQKVWQALERIPYGESRSYADI
                     AAAVGSPKAVRAVGQANKRNDLPIFVPCHRVIGKNSALTGYAGSKTEIKAFLLNIERI
                     SYKEK*"
                     /label="ogt CDS"
     gene            1308402..1308899
                     /gene="ogt"
                     /locus_tag="BSU_13540"
                     /old_locus_tag="BSU13540"
                     /label="ogt gene"
     S_feature       1308900..1309139
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1421924_1422163"
                     /HighExp="Lbstat, S2, BT, BC, LPhT, dia15, LBGstat, M0t90,
                     M9-stat, Sw"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="0.981549"
                     /TUshortSig="SigA, SigH"
                     /TUshortPSig="0.999, 0.999"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S485"
     CDS             1308989..1309114
                     /locus_tag="BSU_13545"
                     /old_locus_tag="BSU13545"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 5: Unknown function"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_009513954.1"
                     /translation="MKPSRSEKLAVFAELFVKLHILSSAQKDEIINVNKKKQKNR*"
                     /label="hypothetical protein CDS"
     gene            1308989..1309114
                     /locus_tag="BSU_13545"
                     /old_locus_tag="BSU13545"
                     /label="gene"
     downshifts      1309107
                     /Source="Nicolas_upshifts"
                     /id="D744"
                     /incds=0
                     /nref=80
                     /ntot=239
                     /MaxReadThrough="1.90528"
                     /MaxDrop="5.2481"
                     /score="4.84132266"
                     /energy="-15.5"
                     /TU="NA"
                     /idTUdmin="U1097"
                     /TUdmin="-4"
                     /isTUend="TRUE"
                     /label="downshifts"
     CDS             complement(1309148..1310209)
                     /gene="mtnA"
                     /locus_tag="BSU_13550"
                     /old_locus_tag="BSU13550"
                     /EC_number="5.3.1.23"
                     /function="16.8: Protect"
                     /function="16.11: Scavenge (Catabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:14551435, 15102328, 16511105, 17690466, 18156470"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 14551435, 15102328,
                     16511105, 17690466, 18156470; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="methylthioribose-1-phosphate isomerase
                     (methionine salvage pathway)"
                     /protein_id="NP_389238.1"
                     /db_xref="EnsemblGenomes-Gn:BSU13550"
                     /db_xref="EnsemblGenomes-Tr:CAB13228"
                     /db_xref="GOA:O31662"
                     /db_xref="InterPro:IPR000649"
                     /db_xref="InterPro:IPR005251"
                     /db_xref="InterPro:IPR011559"
                     /db_xref="InterPro:IPR027363"
                     /db_xref="PDB:2YRF"
                     /db_xref="PDB:2YVK"
                     /db_xref="SubtiList:BG13278"
                     /db_xref="UniProtKB/Swiss-Prot:O31662"
                     /translation="MTHSFAVPRSVEWKETAITILNQQKLPDETEYLELTTKEDVFDA
                     IVTLKVRGAPAIGITAAFGLALAAKDIETDNVTEFRRRLEDIKQYLNSSRPTAINLSW
                     ALERLSHSVENAISVNEAKTNLVHEAIQIQVEDEETCRLIGQNALQLFKKGDRIMTIC
                     NAGSIATSRYGTALAPFYLAKQKDLGLHIYACETRPVLQGSRLTAWELMQGGIDVTLI
                     TDSMAAHTMKEKQISAVIVGADRIAKNGDTANKIGTYGLAILANAFDIPFFVAAPLST
                     FDTKVKCGADIPIEERDPEEVRQISGVRTAPSNVPVFNPAFDITPHDLISGIITEKGI
                     MTGNYEEEIEQLFKGEKVH*"
                     /label="mtnA CDS"
     gene            complement(1309148..1310209)
                     /gene="mtnA"
                     /locus_tag="BSU_13550"
                     /old_locus_tag="BSU13550"
                     /label="mtnA gene"
     downshifts      complement(1309165)
                     /Source="Nicolas_upshifts"
                     /id="D745"
                     /incds=0
                     /nref=261
                     /ntot=286
                     /MaxReadThrough="4.47312"
                     /MaxDrop="7.97339"
                     /score="34.04363"
                     /energy="-17.1"
                     /TU="U1099,U1102"
                     /idTUdmin="U1102"
                     /TUdmin="-418"
                     /isTUend="FALSE"
                     /label="downshifts"
     CDS             complement(1310217..1311410)
                     /gene="mtnK"
                     /locus_tag="BSU_13560"
                     /old_locus_tag="BSU13560"
                     /EC_number="2.7.1.100"
                     /function="16.11: Scavenge (Catabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:210167, 11545674, 15102328, 17522047, 23649237"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 210167, 11545674,
                     15102328, 17522047, 23649237; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="methylthioribose kinase (methionine salvage
                     pathway, promiscuous)"
                     /protein_id="NP_389239.2"
                     /db_xref="EnsemblGenomes-Gn:BSU13560"
                     /db_xref="EnsemblGenomes-Tr:CAB13229"
                     /db_xref="GOA:O31663"
                     /db_xref="InterPro:IPR002575"
                     /db_xref="InterPro:IPR009212"
                     /db_xref="InterPro:IPR011009"
                     /db_xref="PDB:2OLC"
                     /db_xref="PDB:2PU8"
                     /db_xref="PDB:2PUI"
                     /db_xref="PDB:2PUL"
                     /db_xref="PDB:2PUN"
                     /db_xref="PDB:2PUP"
                     /db_xref="SubtiList:BG13279"
                     /db_xref="UniProtKB/Swiss-Prot:O31663"
                     /translation="MGVTKTPLYETLNESSAVALAVKLGLFPSKSTLTCQEIGDGNLN
                     YVFHIYDQEHDRALIIKQAVPYAKVVGESWPLTIDRARIESSALIRQGEHVPHLVPRV
                     FYSDTEMAVTVMEDLSHLKIARKGLIEGENYPHLSQHIGEFLGKTLFYSSDYALEPKV
                     KKQLVKQFTNPELCDITERLVFTDPFFDHDTNDFEEELRPFVEKLWNNDSVKIEAAKL
                     KKSFLTSAETLIHGDLHTGSIFASEHETKVIDPEFAFYGPIGFDVGQFIANLFLNALS
                     RDGADREPLYEHVNQVWETFEETFSEAWQKDSLDVYANIDGYLTDTLSHIFEEAIGFA
                     GCELIRRTIGLAHVADLDTIVPFDKRIGRKRLALETGTAFIEKRSEFKTITDVIELFK
                     LLVKE*"
                     /label="mtnK CDS"
     gene            complement(1310217..1311410)
                     /gene="mtnK"
                     /locus_tag="BSU_13560"
                     /old_locus_tag="BSU13560"
                     /label="mtnK gene"
     downshifts      1310277
                     /Source="Nicolas_upshifts"
                     /id="D746"
                     /incds=1
                     /nref=1
                     /ntot=51
                     /MaxReadThrough="3.02938"
                     /MaxDrop="3.49719"
                     /score="4.84132266"
                     /energy="-15.5"
                     /TU="NA"
                     /idTUdmin="U1097"
                     /TUdmin=1166
                     /isTUend="FALSE"
                     /label="downshifts"
     downshifts      complement(1311497)
                     /Source="Nicolas_upshifts"
                     /id="D747"
                     /incds=0
                     /nref=1
                     /ntot=1
                     /MaxReadThrough="8.61071"
                     /MaxDrop="3.05641"
                     /score="27.7981655"
                     /energy="-17.6"
                     /TU="U1099,U1102"
                     /idTUdmin="U1102"
                     /TUdmin="-2750"
                     /isTUend="FALSE"
                     /label="downshifts"
     misc_RNA        complement(1311503..1311659)
                     /gene="mswC"
                     /locus_tag="BSU_misc_RNA_20"
                     /product="S-adenosylmethionine riboswitch"
                     /experiment="publication(s) with functional evidences,
                     PMID:10094622, 12626738, 12910260, 15102328, 17381305,
                     18039762"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 10094622, 12626738,
                     12910260, 15102328, 17381305, 18039762; Product type n :
                     RNA"
                     /function="12: Regulatory functions"
                     /label="mswC RNA"
     gene            complement(1311503..1311659)
                     /gene="mswC"
                     /locus_tag="BSU_misc_RNA_20"
                     /label="mswC gene"
     promotor_-10    complement(1311694..1311713)
                     /Source="Nicolas_upshift_promotors"
                     /id="U1099"
                     /multdbtbs="SigA"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.971028971028971"
                     /psig=1
                     /xcortree=2894
                     /SigmaFactorBS="agatttatattaaaaaataTATTGACAactaactaaattacc
                     TGTTACCATGTTCATCAACTgataaattagaattgtcaaacaagtgaatatattctct
                     t"
                     /listShort="NA, mtnK, mtnA, S484"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(1311695)
                     /Source="Nicolas_upshifts"
                     /id="U1099"
                     /multdbtbs="SigA"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.971028971028971"
                     /psig=1
                     /xcortree=2894
                     /SigmaFactorBS="agatttatattaaaaaataTATTGACAactaactaaattacc
                     TGTTACCATGTTCATCAACTgataaattagaattgtcaaacaagtgaatatattctct
                     t"
                     /listShort="NA, mtnK, mtnA, S484"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(1311729..1311736)
                     /Source="Nicolas_upshift_promotors"
                     /id="U1099"
                     /multdbtbs="SigA"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.971028971028971"
                     /psig=1
                     /xcortree=2894
                     /SigmaFactorBS="agatttatattaaaaaataTATTGACAactaactaaattacc
                     TGTTACCATGTTCATCAACTgataaattagaattgtcaaacaagtgaatatattctct
                     t"
                     /listShort="NA, mtnK, mtnA, S484"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-35    1311739..1311742
                     /Source="Nicolas_upshift_promotors"
                     /id="U1100"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.276723276723277"
                     /psig="0.98001998001998"
                     /xcortree=2865
                     /SigmaFactorBS="ggtaacaggtaatttagttagttgtcaatataTTTTttaata
                     taaatctttTCTGATATCATCGAAAACAGgaatgctctcccgaacttctgcgctttct
                     t"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             complement(1311743..1312522)
                     /gene="mtnU"
                     /locus_tag="BSU_13570"
                     /old_locus_tag="BSU13570"
                     /EC_number="3.5.1.3"
                     /function="16.8: Protect"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 2a: Function from experimental evidences
                     in other organisms; PubMedId: 12022921, 19464248,
                     19596042, 21288482, 23944997, 24387040; Product type e :
                     enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="ketoglutaramate omega-amidase"
                     /protein_id="NP_389240.1"
                     /db_xref="EnsemblGenomes-Gn:BSU13570"
                     /db_xref="EnsemblGenomes-Tr:CAB13230"
                     /db_xref="GOA:O31664"
                     /db_xref="InterPro:IPR003010"
                     /db_xref="InterPro:IPR036526"
                     /db_xref="SubtiList:BG13280"
                     /db_xref="UniProtKB/Swiss-Prot:O31664"
                     /translation="MKWTISCLQFDISYGKPSENIKKAEFFIEKESKHADVLVLPELW
                     TTGYDLANLDELADEDGRSAQSWLKKTAKKHGVHIVAGSVAVRKNSDVYNTMYIADKE
                     GQIIKEYRKAHLFQLMDEHLYLSAGSEDGYFELDGVKSSGLICYDIRFPEWIRKHTTK
                     GANVLFISAEWPLPRLDHWKSLLIARAIENQCFVAACNCTGSNPDNEFAGHSLIIDPW
                     GRVLAEGGREEGIVRAEIDLQESAEVRESIPVFDDIRKDLY*"
                     /label="mtnU CDS"
     gene            complement(1311743..1312522)
                     /gene="mtnU"
                     /locus_tag="BSU_13570"
                     /old_locus_tag="BSU13570"
                     /label="mtnU gene"
     promotor_-10    1311758..1311777
                     /Source="Nicolas_upshift_promotors"
                     /id="U1100"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.276723276723277"
                     /psig="0.98001998001998"
                     /xcortree=2865
                     /SigmaFactorBS="ggtaacaggtaatttagttagttgtcaatataTTTTttaata
                     taaatctttTCTGATATCATCGAAAACAGgaatgctctcccgaacttctgcgctttct
                     t"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        1311767
                     /Source="Nicolas_upshifts"
                     /id="U1100"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.276723276723277"
                     /psig="0.98001998001998"
                     /xcortree=2865
                     /SigmaFactorBS="ggtaacaggtaatttagttagttgtcaatataTTTTttaata
                     taaatctttTCTGATATCATCGAAAACAGgaatgctctcccgaacttctgcgctttct
                     t"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    1312215..1312222
                     /Source="Nicolas_upshift_promotors"
                     /id="U1101"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.634365634365634"
                     /psig="0.99100899100899"
                     /xcortree=2893
                     /SigmaFactorBS="ttttctgtactctttaatgatttgcCCTTCCTTatccgcgat
                     gtaCATTGTATTATAAACATCAGaattcttcctgacagcgaccgatccggcgacaata
                     t"
                     /listShort="S486, mtnE"
                     /listLong="NA, mtnW, mtnX, mtnB, mtnD"
                     /label="promotor_-35"
     promotor_-10    1312235..1312254
                     /Source="Nicolas_upshift_promotors"
                     /id="U1101"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.634365634365634"
                     /psig="0.99100899100899"
                     /xcortree=2893
                     /SigmaFactorBS="ttttctgtactctttaatgatttgcCCTTCCTTatccgcgat
                     gtaCATTGTATTATAAACATCAGaattcttcctgacagcgaccgatccggcgacaata
                     t"
                     /listShort="S486, mtnE"
                     /listLong="NA, mtnW, mtnX, mtnB, mtnD"
                     /label="promotor_-10"
     upshifts        1312250
                     /Source="Nicolas_upshifts"
                     /id="U1101"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.634365634365634"
                     /psig="0.99100899100899"
                     /xcortree=2893
                     /SigmaFactorBS="ttttctgtactctttaatgatttgcCCTTCCTTatccgcgat
                     gtaCATTGTATTATAAACATCAGaattcttcctgacagcgaccgatccggcgacaata
                     t"
                     /listShort="S486, mtnE"
                     /listLong="NA, mtnW, mtnX, mtnB, mtnD"
                     /label="upshifts"
     S_feature       1312257..1312574
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1425281_1425598"
                     /HighExp="LoTm, S8, C30, BC, S7, B36, B60, T2.0H, Sw,
                     UNK1"
                     /AntisenseName="mtnU"
                     /AntisenseCor="0.77659263363209297"
                     /AntisenseRegPval="-54.8"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.991"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S486"
     promotor_-35    1312544..1312551
                     /Source="Nicolas_upshift_promotors"
                     /id="U1103"
                     /multdbtbs="SigA"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.929070929070929"
                     /psig=1
                     /xcortree=3072
                     /SigmaFactorBS="atttcatctttttaacaccccaaattttTCTTTACTtttttc
                     atttaaccATATATGATGATGGACTATCatttcaagatttttttagaaggtgagaata
                     g"
                     /listShort="mtnE, NA, mtnW, mtnX, mtnB, mtnD"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    complement(1312552..1312571)
                     /Source="Nicolas_upshift_promotors"
                     /id="U1102"
                     /multdbtbs="SigA"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.827172827172827"
                     /psig=1
                     /xcortree=2895
                     /SigmaFactorBS="caaatttcatctattctcaccttctaaaaaaaTCTTGAAAtg
                     atagtccatcatcATATATGGTTAAATGAAAAAagtaaagaaaaatttggggtgttaa
                     a"
                     /listShort="mtnU, NA, mtnK, mtnA, S484"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     promotor_-10    1312566..1312585
                     /Source="Nicolas_upshift_promotors"
                     /id="U1103"
                     /multdbtbs="SigA"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.929070929070929"
                     /psig=1
                     /xcortree=3072
                     /SigmaFactorBS="atttcatctttttaacaccccaaattttTCTTTACTtttttc
                     atttaaccATATATGATGATGGACTATCatttcaagatttttttagaaggtgagaata
                     g"
                     /listShort="mtnE, NA, mtnW, mtnX, mtnB, mtnD"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(1312566)
                     /Source="Nicolas_upshifts"
                     /id="U1102"
                     /multdbtbs="SigA"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.827172827172827"
                     /psig=1
                     /xcortree=2895
                     /SigmaFactorBS="caaatttcatctattctcaccttctaaaaaaaTCTTGAAAtg
                     atagtccatcatcATATATGGTTAAATGAAAAAagtaaagaaaaatttggggtgttaa
                     a"
                     /listShort="mtnU, NA, mtnK, mtnA, S484"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     upshifts        1312576
                     /Source="Nicolas_upshifts"
                     /id="U1103"
                     /multdbtbs="SigA"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.929070929070929"
                     /psig=1
                     /xcortree=3072
                     /SigmaFactorBS="atttcatctttttaacaccccaaattttTCTTTACTtttttc
                     atttaaccATATATGATGATGGACTATCatttcaagatttttttagaaggtgagaata
                     g"
                     /listShort="mtnE, NA, mtnW, mtnX, mtnB, mtnD"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(1312587..1312594)
                     /Source="Nicolas_upshift_promotors"
                     /id="U1102"
                     /multdbtbs="SigA"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.827172827172827"
                     /psig=1
                     /xcortree=2895
                     /SigmaFactorBS="caaatttcatctattctcaccttctaaaaaaaTCTTGAAAtg
                     atagtccatcatcATATATGGTTAAATGAAAAAagtaaagaaaaatttggggtgttaa
                     a"
                     /listShort="mtnU, NA, mtnK, mtnA, S484"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             1312617..1313813
                     /gene="mtnE"
                     /locus_tag="BSU_13580"
                     /old_locus_tag="BSU13580"
                     /EC_number="2.6.1.1"
                     /function="16.2: Construct biomass (Anabolism)"
                     /function="16.11: Scavenge (Catabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:12670965, 15102328, 23429746, 24387040"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 12670965, 15102328,
                     23429746, 24387040; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="methionine-glutamine aminotransferase"
                     /protein_id="NP_389241.1"
                     /db_xref="EnsemblGenomes-Gn:BSU13580"
                     /db_xref="EnsemblGenomes-Tr:CAB13231"
                     /db_xref="GOA:O31665"
                     /db_xref="InterPro:IPR004839"
                     /db_xref="InterPro:IPR015421"
                     /db_xref="InterPro:IPR015422"
                     /db_xref="InterPro:IPR015424"
                     /db_xref="SubtiList:BG13281"
                     /db_xref="UniProtKB/Swiss-Prot:O31665"
                     /translation="MKFEQSHVLKELPKQFFASLVQKVNRKLAEGHDVINLGQGNPDQ
                     PTPEHIVEEMKRAVADPENHKYSSFRGSYRLKSAAAAFYKREYGIDLDPETEVAVLFG
                     GKAGLVELPQCLLNPGDTILVPDPGYPDYWSGVTLAKAKMEMMPLVKDRAFLPDYSSI
                     TAEIREQAKLMYLNYPNNPTGAVATSEFFEDTVRFAAENGICVVHDFAYGAVGFDGCK
                     PLSFLQTEGAKDIGIEIYTLSKTYNMAGWRVGFAVGNASVIEAINLYQDHMFVSLFRA
                     TQEAAAEALLADQTCVAEQNARYESRRNAWITACREIGWDVTAPAGSFFAWLPVPEGY
                     TSEQFSDLLLEKANVAVAAGNGFGEYGEGYVRVGLLTSEERLKEAAYRIGKLNLFTQK
                     SIDKTL*"
                     /label="mtnE CDS"
     gene            1312617..1313813
                     /gene="mtnE"
                     /locus_tag="BSU_13580"
                     /old_locus_tag="BSU13580"
                     /label="mtnE gene"
     promotor_-35    1313795..1313802
                     /Source="Nicolas_upshift_promotors"
                     /id="U1104"
                     /multdbtbs="SigA,SigA"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.954045954045954"
                     /psig="0.998001998001998"
                     /xcortree=2896
                     /SigmaFactorBS="acctgtttacccaaaaaagCATTGACAagaccttataacgaT
                     GGGATAATTCAAAATAATTtataaaatctatattttcttatcaagagcaggcagaggg
                     a"
                     /listShort="NA, mtnW, mtnX, mtnB, mtnD"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    1313817..1313836
                     /Source="Nicolas_upshift_promotors"
                     /id="U1104"
                     /multdbtbs="SigA,SigA"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.954045954045954"
                     /psig="0.998001998001998"
                     /xcortree=2896
                     /SigmaFactorBS="acctgtttacccaaaaaagCATTGACAagaccttataacgaT
                     GGGATAATTCAAAATAATTtataaaatctatattttcttatcaagagcaggcagaggg
                     a"
                     /listShort="NA, mtnW, mtnX, mtnB, mtnD"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        1313836
                     /Source="Nicolas_upshifts"
                     /id="U1104"
                     /multdbtbs="SigA,SigA"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.954045954045954"
                     /psig="0.998001998001998"
                     /xcortree=2896
                     /SigmaFactorBS="acctgtttacccaaaaaagCATTGACAagaccttataacgaT
                     GGGATAATTCAAAATAATTtataaaatctatattttcttatcaagagcaggcagaggg
                     a"
                     /listShort="NA, mtnW, mtnX, mtnB, mtnD"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     misc_RNA        1313852..1313952
                     /gene="mswD"
                     /locus_tag="BSU_misc_RNA_21"
                     /product="S-adenosylmethionine riboswitch"
                     /experiment="publication(s) with functional evidences,
                     PMID:10094622, 12626738, 12910260, 15102328, 17381305,
                     18039762"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 10094622, 12626738,
                     12910260, 15102328, 17381305, 18039762; Product type n :
                     RNA"
                     /function="16.3: Control"
                     /label="mswD RNA"
     gene            1313852..1313952
                     /gene="mswD"
                     /locus_tag="BSU_misc_RNA_21"
                     /label="mswD gene"
     downshifts      1313951
                     /Source="Nicolas_upshifts"
                     /id="D748"
                     /incds=0
                     /nref=49
                     /ntot=190
                     /MaxReadThrough="7.27369"
                     /MaxDrop="4.19981"
                     /score="-1.80590532"
                     /energy="-10.7"
                     /TU="U1103,U1104"
                     /idTUdmin="U1101"
                     /TUdmin=110
                     /isTUend="FALSE"
                     /label="downshifts"
     CDS             1314037..1315254
                     /gene="mtnW"
                     /locus_tag="BSU_13590"
                     /old_locus_tag="BSU13590"
                     /EC_number="5.3.2.5"
                     /function="16.11: Scavenge (Catabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:12022921, 14551435, 15102328, 15950120, 16737967,
                     18403380"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 12022921, 14551435,
                     15102328, 15950120, 16737967, 18403380; Product type e :
                     enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="2,3-diketo-5-methylthiopentyl-1-phosphate
                     enolase (DK-MTP-1-P enolase)"
                     /protein_id="NP_389242.2"
                     /db_xref="EnsemblGenomes-Gn:BSU13590"
                     /db_xref="EnsemblGenomes-Tr:CAB13232"
                     /db_xref="GOA:O31666"
                     /db_xref="InterPro:IPR000685"
                     /db_xref="InterPro:IPR017443"
                     /db_xref="InterPro:IPR017717"
                     /db_xref="InterPro:IPR033966"
                     /db_xref="InterPro:IPR036376"
                     /db_xref="InterPro:IPR036422"
                     /db_xref="PDB:2ZVI"
                     /db_xref="SubtiList:BG13282"
                     /db_xref="UniProtKB/Swiss-Prot:O31666"
                     /translation="MSELLATYLLTEPGADTEKKAEQIATGLTVGSWTDLPLVKQEQM
                     QKHKGRVIKVEEREGTAASEKQAVITIAYPEINFSQDIPALLTTVFGKLSLDGKIKLI
                     DLHFSEAFKRALPGPKFGVYGIRKLLGEFERPLLMSIFKGVIGRDLSDIKEQLRQQAL
                     GGVDLIKDDEIFFETGLAPFETRIAEGKQILKETYEQTGHKTLYAVNLTGRTADLKDK
                     ARRAAELGADALLFNVFAYGLDVMQGLAEDPEIPVPIMAHPAVSGAFTSSPFYGFSHA
                     LLLGKLNRYCGADFSLFPSPYGSVALPRADALAIHEECVREDAFNQTFAVPSAGIHPG
                     MVPLLMRDFGIDHIINAGGGVHGHPNGAQGGGRAFRAIIDAVLEAQPIDEKAEQCKDL
                     KLALDKWGKAEAV*"
                     /label="mtnW CDS"
     gene            1314037..1315254
                     /gene="mtnW"
                     /locus_tag="BSU_13590"
                     /old_locus_tag="BSU13590"
                     /label="mtnW gene"
     CDS             1315251..1315958
                     /gene="mtnX"
                     /locus_tag="BSU_13600"
                     /old_locus_tag="BSU13600"
                     /EC_number="3.1.3.87"
                     /function="16.11: Scavenge (Catabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:12022921, 14551435, 15102328, 15950120, 17654724"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 12022921, 14551435,
                     15102328, 15950120, 17654724; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="2-hydroxy-3-keto-5-methylthiopentenyl-1-
                     phosphatephosphatase (HK-MTPenyl-1-P phosphatase)"
                     /protein_id="NP_389243.1"
                     /db_xref="EnsemblGenomes-Gn:BSU13600"
                     /db_xref="EnsemblGenomes-Tr:CAB13233"
                     /db_xref="GOA:O31667"
                     /db_xref="InterPro:IPR006384"
                     /db_xref="InterPro:IPR017718"
                     /db_xref="InterPro:IPR023214"
                     /db_xref="InterPro:IPR036412"
                     /db_xref="PDB:2FEA"
                     /db_xref="SubtiList:BG13283"
                     /db_xref="UniProtKB/Swiss-Prot:O31667"
                     /translation="MTTRKPFIICDFDGTITMNDNIINIMKTFAPPEWMALKDGVLSK
                     TLSIKEGVGRMFGLLPSSLKEEITSFVLEDAKIREGFREFVAFINEHEIPFYVISGGM
                     DFFVYPLLEGIVEKDRIYCNHASFDNDYIHIDWPHSCKGTCSNQCGCCKPSVIHELSE
                     PNQYIIMIGDSVTDVEAAKLSDLCFARDYLLNECREQNLNHLPYQDFYEIRKEIENVK
                     EVQEWLQNKNAGESSLK*"
                     /label="mtnX CDS"
     gene            1315251..1315958
                     /gene="mtnX"
                     /locus_tag="BSU_13600"
                     /old_locus_tag="BSU13600"
                     /label="mtnX gene"
     CDS             1315916..1316545
                     /gene="mtnB"
                     /locus_tag="BSU_13610"
                     /old_locus_tag="BSU13610"
                     /EC_number="4.2.1.109"
                     /function="16.11: Scavenge (Catabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:12022921, 14551435, 15102328, 18391471, 23285211"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 12022921, 14551435,
                     15102328, 18391471, 23285211; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="methylthioribulose-1-phosphate dehydratase
                     (MTRu-1-P dehydratase)"
                     /protein_id="NP_389244.1"
                     /db_xref="EnsemblGenomes-Gn:BSU13610"
                     /db_xref="EnsemblGenomes-Tr:CAB13234"
                     /db_xref="GOA:O31668"
                     /db_xref="InterPro:IPR001303"
                     /db_xref="InterPro:IPR017714"
                     /db_xref="InterPro:IPR036409"
                     /db_xref="SubtiList:BG13284"
                     /db_xref="UniProtKB/Swiss-Prot:O31668"
                     /translation="MAAKQERWRELAEVKRELAERDWFPATSGNLSIKVTDEPLTFLV
                     TASGKDKRKETVEDFLLVDQNGEPAESGHSLKPSAETLLHTHLYNKTNAGCCLHVHTV
                     NNNVISELYGDQKKITFKGQEIIKALGLWEENAEVTVPIIENPAHIPTLAALFAEEIS
                     EDSGAVLIRNHGITAWGKTAFEAKRVLEAYEFLFSYHLKLKTLEHQLVK*"
                     /label="mtnB CDS"
     gene            1315916..1316545
                     /gene="mtnB"
                     /locus_tag="BSU_13610"
                     /old_locus_tag="BSU13610"
                     /label="mtnB gene"
     CDS             1316560..1317096
                     /gene="mtnD"
                     /locus_tag="BSU_13620"
                     /old_locus_tag="BSU13620"
                     /EC_number="1.13.11.54"
                     /EC_number="1.13.11.53"
                     /function="16.11: Scavenge (Catabolism)"
                     /function="16.8: Protect"
                     /function="16.3: Control"
                     /experiment="publication(s) with functional evidences,
                     PMID:10704478, 11371200, 12022880, 12022921, 12402029,
                     15102328, 16297065, 16783794, 24036122"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 10704478, 11371200,
                     12022880, 12022921, 12402029, 15102328, 16297065,
                     16783794, 24036122; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="acireductone dioxygenase (Ni2+ or
                     Fe2+-requiring)"
                     /protein_id="NP_389245.1"
                     /db_xref="EnsemblGenomes-Gn:BSU13620"
                     /db_xref="EnsemblGenomes-Tr:CAB13235"
                     /db_xref="GOA:O31669"
                     /db_xref="InterPro:IPR004313"
                     /db_xref="InterPro:IPR011051"
                     /db_xref="InterPro:IPR014710"
                     /db_xref="InterPro:IPR023956"
                     /db_xref="SubtiList:BG13285"
                     /db_xref="UniProtKB/Swiss-Prot:O31669"
                     /translation="MATIRIHDEANTTIENQEEVASFLDSQEVIYEQWDITRLPEHLS
                     EKYDLTEEEKQQILDTFETEIKDISTRRGYKAQDVISLSDSNPKLDELLENFKREHHH
                     TDDEVRFIVSGHGIFVIQGQDGTFFDVRLNPGDLISVPENIRHYFTLQEDRKVVAVRI
                     FVTTEGWVPIYEKDSVNQ*"
                     /label="mtnD CDS"
     gene            1316560..1317096
                     /gene="mtnD"
                     /locus_tag="BSU_13620"
                     /old_locus_tag="BSU13620"
                     /label="mtnD gene"
     S_feature       complement(1316943..1317136)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1429967_1430160_c"
                     /HighExp="Lbstat, Cold, LBGstat, T0.30H, M9-stat, B60,
                     ferm, T1.30H, LPhT, M0t90"
                     /AntisenseName="mtnD"
                     /AntisenseCor="-0.31139057410816301"
                     /AntisenseRegPval="-6.7"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.999"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S487"
     downshifts      1317096
                     /Source="Nicolas_upshifts"
                     /id="D749"
                     /incds=0
                     /nref=179
                     /ntot=227
                     /MaxReadThrough="1.58976"
                     /MaxDrop="6.10661"
                     /score="35.4563733"
                     /energy="-14.9"
                     /TU="NA"
                     /idTUdmin="U1103"
                     /TUdmin="-1"
                     /isTUend="TRUE"
                     /label="downshifts"
     CDS             complement(1317137..1317457)
                     /gene="ykvA"
                     /locus_tag="BSU_13630"
                     /old_locus_tag="BSU13630"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved hypothetical protein"
                     /protein_id="NP_389246.1"
                     /db_xref="EnsemblGenomes-Gn:BSU13630"
                     /db_xref="EnsemblGenomes-Tr:CAB13236"
                     /db_xref="GOA:O31670"
                     /db_xref="InterPro:IPR010652"
                     /db_xref="SubtiList:BG13308"
                     /db_xref="UniProtKB/Swiss-Prot:O31670"
                     /translation="MKKKKAIMLGAAGGKAILKRKNRKKCIQHITTFFQMLRDWRNGD
                     YPRSQVKTLLLLTAAILYIVMPLDIIPDVILGLGFIDDAAVLGLIWTLIKKELSQYEK
                     WRLQ*"
                     /label="ykvA CDS"
     gene            complement(1317137..1317457)
                     /gene="ykvA"
                     /locus_tag="BSU_13630"
                     /old_locus_tag="BSU13630"
                     /label="ykvA gene"
     downshifts      complement(1317195)
                     /Source="Nicolas_upshifts"
                     /id="D750"
                     /incds=0
                     /nref=5
                     /ntot=148
                     /MaxReadThrough="4.05831"
                     /MaxDrop="2.74575"
                     /score="18.5455371"
                     /energy="-11.3"
                     /TU="U1106"
                     /idTUdmin="U1106"
                     /TUdmin="-220"
                     /isTUend="FALSE"
                     /label="downshifts"
     S_feature       complement(1317458..1317547)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1430482_1430571_c"
                     /HighExp="Lbstat, M9-stat, B60, T0.30H, LBGstat, M0t90,
                     T1.0H, S2, T3.0H, T3.30H"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.999"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S488"
     promotor_-35    1317483..1317489
                     /Source="Nicolas_upshift_promotors"
                     /id="U1105"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp=1
                     /psig=1
                     /xcortree=237
                     /SigmaFactorBS="tcattgggcatacctcctgcctggcggcgTGTTTAAgatatt
                     cttcacctGGGTATTGTTCTTCTAATCctatcaatatatctattatacctgaaaaatt
                     a"
                     /listShort="S489, S490, spo0E, eag"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    1317504..1317522
                     /Source="Nicolas_upshift_promotors"
                     /id="U1105"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp=1
                     /psig=1
                     /xcortree=237
                     /SigmaFactorBS="tcattgggcatacctcctgcctggcggcgTGTTTAAgatatt
                     cttcacctGGGTATTGTTCTTCTAATCctatcaatatatctattatacctgaaaaatt
                     a"
                     /listShort="S489, S490, spo0E, eag"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        1317514
                     /Source="Nicolas_upshifts"
                     /id="U1105"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp=1
                     /psig=1
                     /xcortree=237
                     /SigmaFactorBS="tcattgggcatacctcctgcctggcggcgTGTTTAAgatatt
                     cttcacctGGGTATTGTTCTTCTAATCctatcaatatatctattatacctgaaaaatt
                     a"
                     /listShort="S489, S490, spo0E, eag"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     S_feature       1317515..1317599
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1430539_1430623"
                     /HighExp="Etha, Gly, BC, Salt, Sw, B60, LoTm, M9-stat,
                     LPhT, HiTm"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigB"
                     /TUshortPSig=1
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S489"
     promotor_-10    complement(1317529..1317548)
                     /Source="Nicolas_upshift_promotors"
                     /id="U1106"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.682317682317682"
                     /psig="0.999000999001"
                     /xcortree=1602
                     /SigmaFactorBS="tgcattattacagattatactttatttgtaaacatattttCA
                     TTaaataagttaatttTTCAGGTATAATAGATATATtgataggattagaagaacaata
                     c"
                     /listShort="S488, ykvA, S487"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(1317546)
                     /Source="Nicolas_upshifts"
                     /id="U1106"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.682317682317682"
                     /psig="0.999000999001"
                     /xcortree=1602
                     /SigmaFactorBS="tgcattattacagattatactttatttgtaaacatattttCA
                     TTaaataagttaatttTTCAGGTATAATAGATATATtgataggattagaagaacaata
                     c"
                     /listShort="S488, ykvA, S487"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(1317563..1317566)
                     /Source="Nicolas_upshift_promotors"
                     /id="U1106"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.682317682317682"
                     /psig="0.999000999001"
                     /xcortree=1602
                     /SigmaFactorBS="tgcattattacagattatactttatttgtaaacatattttCA
                     TTaaataagttaatttTTCAGGTATAATAGATATATtgataggattagaagaacaata
                     c"
                     /listShort="S488, ykvA, S487"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-35    1317573..1317580
                     /Source="Nicolas_upshift_promotors"
                     /id="U1107"
                     /multdbtbs="SigA"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.988011988011988"
                     /psig=1
                     /xcortree=2934
                     /SigmaFactorBS="tacctgaaaaattaacttatttaatgaaaataTGTTTACAaa
                     taaagtataatcTGTAATAATGCACAATAACCcaatcaaacttgtttcctatttctta
                     g"
                     /listShort="S490, spo0E, eag"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    1317595..1317614
                     /Source="Nicolas_upshift_promotors"
                     /id="U1107"
                     /multdbtbs="SigA"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.988011988011988"
                     /psig=1
                     /xcortree=2934
                     /SigmaFactorBS="tacctgaaaaattaacttatttaatgaaaataTGTTTACAaa
                     taaagtataatcTGTAATAATGCACAATAACCcaatcaaacttgtttcctatttctta
                     g"
                     /listShort="S490, spo0E, eag"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     S_feature       1317601..1317659
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1430625_1430683"
                     /HighExp="Etha, Gly, Sw, BC, LoTm, B36, T3.30H, Salt,
                     T5.0H, B60"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA, SigB"
                     /TUshortPSig="1, 1"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S490"
     upshifts        1317601
                     /Source="Nicolas_upshifts"
                     /id="U1107"
                     /multdbtbs="SigA"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.988011988011988"
                     /psig=1
                     /xcortree=2934
                     /SigmaFactorBS="tacctgaaaaattaacttatttaatgaaaataTGTTTACAaa
                     taaagtataatcTGTAATAATGCACAATAACCcaatcaaacttgtttcctatttctta
                     g"
                     /listShort="S490, spo0E, eag"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     downshifts      complement(1317657)
                     /Source="Nicolas_upshifts"
                     /id="D751"
                     /incds=0
                     /nref=3
                     /ntot=61
                     /MaxReadThrough="0.87927"
                     /MaxDrop="3.53961"
                     /score="18.5455371"
                     /energy="-11.3"
                     /TU="NA"
                     /idTUdmin="U1106"
                     /TUdmin="-682"
                     /isTUend="FALSE"
                     /label="downshifts"
     CDS             1317660..1317917
                     /gene="spo0E"
                     /locus_tag="BSU_13640"
                     /old_locus_tag="BSU13640"
                     /function="16.13: Shape"
                     /function="16.3: Control"
                     /experiment="publication(s) with functional evidences,
                     PMID:15057450, 15916600, 17001075, 19332814, 22524514"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 15057450, 15916600,
                     17001075, 19332814, 22524514; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="negative regulatory phosphatase acting on
                     Spo0A-P (sporulation)"
                     /protein_id="NP_389247.1"
                     /db_xref="EnsemblGenomes-Gn:BSU13640"
                     /db_xref="EnsemblGenomes-Tr:CAB13237"
                     /db_xref="GOA:P05043"
                     /db_xref="InterPro:IPR018540"
                     /db_xref="InterPro:IPR037208"
                     /db_xref="SubtiList:BG10769"
                     /db_xref="UniProtKB/Swiss-Prot:P05043"
                     /translation="MGGSSEQERLLVSIDEKRKLMIDAARKQGFTGHDTIRHSQELDC
                     LINEYHQLMQENEHSQGIQGLVKKLGLWPRRDVMPAYDANK*"
                     /label="spo0E CDS"
     gene            1317660..1317917
                     /gene="spo0E"
                     /locus_tag="BSU_13640"
                     /old_locus_tag="BSU13640"
                     /label="spo0E gene"
     downshifts      1317911
                     /Source="Nicolas_upshifts"
                     /id="D752"
                     /incds=0
                     /nref=7
                     /ntot=169
                     /MaxReadThrough="4.39402"
                     /MaxDrop="3.59614"
                     /score="0.224700481"
                     /energy="-5.9"
                     /TU="U1105,U1107"
                     /idTUdmin="U1105"
                     /TUdmin="-440"
                     /isTUend="FALSE"
                     /label="downshifts"
     CDS             1318003..1318434
                     /gene="eag"
                     /locus_tag="BSU_13650"
                     /old_locus_tag="BSU13650"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 15849754, 16850406;
                     Product type m: membrane component"
                     /codon_start=1
                     /transl_table=11
                     /product="putative small membrane protein"
                     /protein_id="NP_389248.1"
                     /db_xref="EnsemblGenomes-Gn:BSU13650"
                     /db_xref="EnsemblGenomes-Tr:CAB13238"
                     /db_xref="GOA:P06630"
                     /db_xref="SubtiList:BG10770"
                     /db_xref="UniProtKB/Swiss-Prot:P06630"
                     /translation="MKELAILITEMVNQFHDAFISLCGIFGIHLTDKEMHFWVIGIFG
                     IFFFGVTHAVFTWLSKWSMTALSFIYTVTVIIVIVFAIEIQQKVTGRGNMEFLDATEG
                     IKGFLVFFMFFLLLKMLLRFIKILFSGRPASKSNGNARSRR*"
                     /label="eag CDS"
     gene            1318003..1318434
                     /gene="eag"
                     /locus_tag="BSU_13650"
                     /old_locus_tag="BSU13650"
                     /label="eag gene"
     CDS             complement(1318462..1319982)
                     /gene="kinD"
                     /locus_tag="BSU_13660"
                     /old_locus_tag="BSU13660"
                     /EC_number="2.7.13.3"
                     /function="16.13: Shape"
                     /function="16.3: Control"
                     /experiment="publication(s) with functional evidences,
                     PMID:11069677, 11673427, 16166384, 10411754, 21622736,
                     22074846, 22716461, 23569226"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 11069677, 11673427,
                     16166384, 10411754, 21622736, 22074846, 22716461,
                     23569226; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="histidine kinase phosphorylating Spo0A"
                     /protein_id="NP_389249.1"
                     /db_xref="EnsemblGenomes-Gn:BSU13660"
                     /db_xref="EnsemblGenomes-Tr:CAB13239"
                     /db_xref="GOA:O31671"
                     /db_xref="InterPro:IPR003594"
                     /db_xref="InterPro:IPR003661"
                     /db_xref="InterPro:IPR004358"
                     /db_xref="InterPro:IPR005467"
                     /db_xref="InterPro:IPR029151"
                     /db_xref="InterPro:IPR033479"
                     /db_xref="InterPro:IPR036097"
                     /db_xref="InterPro:IPR036890"
                     /db_xref="PDB:4JGO"
                     /db_xref="PDB:4JGP"
                     /db_xref="PDB:4JGQ"
                     /db_xref="PDB:4JGR"
                     /db_xref="SubtiList:BG13309"
                     /db_xref="UniProtKB/Swiss-Prot:O31671"
                     /translation="MLERCKLKILKGACGRVKLYIILVVIPAIVISFFVYEKEKDTIA
                     AEHKQEASVLLNLHRNKINYLIGETMARMTSLSIAIDRPVDIKKMQSILEKTFDSEPR
                     FSGLYFLNAKGDVTASTTELKTKVNLADRSFFIKAKETKKTVISDSYSSRITGQPIFT
                     ICVPVLDSKRNVTDYLVAAIQIDYLKNLINLLSPDVYIEVVNQDGKMIFASGQASHAE
                     DQKPVSGYLDDISWNMKVYPNPVTIEELSKSLVLPLSCIIVLLNILFILVLYYLLKRQ
                     TQLERSENEAQKLELIGTLAASTAHEIRNPLTGISGFIQLLQKKYKGEEDQLYFSIIE
                     QEIKRINQIVSEFLVLGKPTAEKWELNSLQDIIGEIMPIIYSEGNLYNVEVELQYLTE
                     QPLLVKCTKDHIKQVILNVAKNGLESMPEGGKLTISLGALDKKAIIKVVDNGEGISQE
                     MLDHIFLPFVTSKEKGTGLGLVVCKRIVLMYGGSIHIESEVRRGTEVTITLPVSAS*"
                     /label="kinD CDS"
     gene            complement(1318462..1319982)
                     /gene="kinD"
                     /locus_tag="BSU_13660"
                     /old_locus_tag="BSU13660"
                     /label="kinD gene"
     downshifts      complement(1318474)
                     /Source="Nicolas_upshifts"
                     /id="D753"
                     /incds=0
                     /nref=106
                     /ntot=227
                     /MaxReadThrough="0.62895"
                     /MaxDrop="5.24795"
                     /score="18.5455371"
                     /energy="-11.3"
                     /TU="NA"
                     /idTUdmin="U1109"
                     /TUdmin="-3"
                     /isTUend="TRUE"
                     /label="downshifts"
     promotor_-35    1319183..1319189
                     /Source="Nicolas_upshift_promotors"
                     /id="U1108"
                     /multdbtbs="-"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp=1
                     /psig=1
                     /xcortree=948
                     /SigmaFactorBS="ctgggtctgccgcttcagcaaataatacagcacgAGAATAAa
                     aaggatattcagCAGAACAATAATacatgaaagcggaagcacaaggcttttcgacagt
                     t"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    1319203..1319214
                     /Source="Nicolas_upshift_promotors"
                     /id="U1108"
                     /multdbtbs="-"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp=1
                     /psig=1
                     /xcortree=948
                     /SigmaFactorBS="ctgggtctgccgcttcagcaaataatacagcacgAGAATAAa
                     aaggatattcagCAGAACAATAATacatgaaagcggaagcacaaggcttttcgacagt
                     t"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        1319209
                     /Source="Nicolas_upshifts"
                     /id="U1108"
                     /multdbtbs="-"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp=1
                     /psig=1
                     /xcortree=948
                     /SigmaFactorBS="ctgggtctgccgcttcagcaaataatacagcacgAGAATAAa
                     aaggatattcagCAGAACAATAATacatgaaagcggaagcacaaggcttttcgacagt
                     t"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     misc_feature    complement(1319990..1320009)
                     /Source="Nicolas_upshift_promotors"
                     /id="U1109"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.98101898101898"
                     /psig=1
                     /xcortree=2145
                     /SigmaFactorBS="aagcttgccaacatctttttctaatttttttggttatttttt
                     cttattaaagaagaagaaacAATGATATAATACCTCTAATcaggtgtatgttggagcg
                     a"
                     /listShort="kinD"
                     /GFF_Attribute="listLong"
                     /label="promotor_single_box"
                     /note="Geneious type: promotor_single_box"
     upshifts        complement(1320011)
                     /Source="Nicolas_upshifts"
                     /id="U1109"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.98101898101898"
                     /psig=1
                     /xcortree=2145
                     /SigmaFactorBS="aagcttgccaacatctttttctaatttttttggttatttttt
                     cttattaaagaagaagaaacAATGATATAATACCTCTAATcaggtgtatgttggagcg
                     a"
                     /listShort="kinD"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    1320109..1320116
                     /Source="Nicolas_upshift_promotors"
                     /id="U1110"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.971028971028971"
                     /psig=1
                     /xcortree=2454
                     /SigmaFactorBS="cattttaaaaaagaagagaaatattggaaagattttTATTGA
                     CAttttggtctttgttTATTAATGTTTCTCTGTAACggtttctaaaaggatgattgag
                     a"
                     /listShort="mhqR"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    1320131..1320150
                     /Source="Nicolas_upshift_promotors"
                     /id="U1110"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.971028971028971"
                     /psig=1
                     /xcortree=2454
                     /SigmaFactorBS="cattttaaaaaagaagagaaatattggaaagattttTATTGA
                     CAttttggtctttgttTATTAATGTTTCTCTGTAACggtttctaaaaggatgattgag
                     a"
                     /listShort="mhqR"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        1320133
                     /Source="Nicolas_upshifts"
                     /id="U1110"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.971028971028971"
                     /psig=1
                     /xcortree=2454
                     /SigmaFactorBS="cattttaaaaaagaagagaaatattggaaagattttTATTGA
                     CAttttggtctttgttTATTAATGTTTCTCTGTAACggtttctaaaaggatgattgag
                     a"
                     /listShort="mhqR"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             1320175..1320612
                     /gene="mhqR"
                     /locus_tag="BSU_13670"
                     /old_locus_tag="BSU13670"
                     /function="16.3: Control"
                     /experiment="publication(s) with functional evidences,
                     PMID:17725564, 17962296, 18282125"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 17725564, 17962296,
                     18282125; Product type r: regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator (MarR family)"
                     /protein_id="NP_389250.1"
                     /db_xref="EnsemblGenomes-Gn:BSU13670"
                     /db_xref="EnsemblGenomes-Tr:CAB13240"
                     /db_xref="GOA:O31672"
                     /db_xref="InterPro:IPR000835"
                     /db_xref="InterPro:IPR023187"
                     /db_xref="InterPro:IPR036388"
                     /db_xref="InterPro:IPR036390"
                     /db_xref="SubtiList:BG13310"
                     /db_xref="UniProtKB/Swiss-Prot:O31672"
                     /translation="MTEKSLKLFIVLSRAYRSINDHMNKHIHKHGLNPTEFAVLELLY
                     HKGDQPLQQIGDKILLASGSITYVVDKLEQKELLIRKASPTDRRVTFAQITEKGIGLL
                     NDIFPDHAAEIDEMISVLSEEEVEMCTEMLKRVGLNAKQFHNK*"
                     /label="mhqR CDS"
     gene            1320175..1320612
                     /gene="mhqR"
                     /locus_tag="BSU_13670"
                     /old_locus_tag="BSU13670"
                     /label="mhqR gene"
     downshifts      1320595
                     /Source="Nicolas_upshifts"
                     /id="D754"
                     /incds=0
                     /nref=210
                     /ntot=257
                     /MaxReadThrough="1.20686"
                     /MaxDrop="5.47215"
                     /score="1.59181784"
                     /energy="-8.9"
                     /TU="U1110"
                     /idTUdmin="U1110"
                     /TUdmin="-22"
                     /isTUend="TRUE"
                     /label="downshifts"
     CDS             complement(1320652..1321437)
                     /gene="motB"
                     /locus_tag="BSU_13680"
                     /old_locus_tag="BSU13680"
                     /function="16.5: Explore"
                     /experiment="publication(s) with functional evidences,
                     PMID:16095621, 18566286, 24296669, 24771657, 25273986"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 16095621, 18566286,
                     24296669, 24771657, 25273986; Product type f: factor"
                     /codon_start=1
                     /transl_table=11
                     /product="motility protein B; MotB component of the
                     H+-coupled stator flagellum complex"
                     /protein_id="NP_389251.1"
                     /db_xref="EnsemblGenomes-Gn:BSU13680"
                     /db_xref="EnsemblGenomes-Tr:CAB13241"
                     /db_xref="GOA:P28612"
                     /db_xref="InterPro:IPR006665"
                     /db_xref="InterPro:IPR025713"
                     /db_xref="InterPro:IPR036737"
                     /db_xref="SubtiList:BG10689"
                     /db_xref="UniProtKB/Swiss-Prot:P28612"
                     /translation="MARKKKKKHEDEHVDESWLVPYADILTLLLALFIVLYASSSIDA
                     AKFQMLSKSFNEVFTGGTGVLDYSSVTPPENESDGIDEVKKEKEEKEKNKKEKEKAAD
                     QEELENVKSQVEKFIKDKKLEHQLETKMTSEGLLITIKDSIFFDSGKATIRKEDVPLA
                     KEISNLLVINPPRNIIISGHTDNMPIKNSEFQSNWHLSVMRAVNFMGLLIENPKLDAK
                     VFSAKGYGEYKPVASNKTAEGRSKNRRVEVLILPRGAAETNEK*"
                     /label="motB CDS"
     gene            complement(1320652..1321437)
                     /gene="motB"
                     /locus_tag="BSU_13680"
                     /old_locus_tag="BSU13680"
                     /label="motB gene"
     downshifts      complement(1320671)
                     /Source="Nicolas_upshifts"
                     /id="D755"
                     /incds=0
                     /nref=224
                     /ntot=246
                     /MaxReadThrough="3.05351"
                     /MaxDrop="6.69306"
                     /score="21.3673767"
                     /energy="-12.4"
                     /TU="U1111"
                     /idTUdmin="U1111"
                     /TUdmin="-88"
                     /isTUend="FALSE"
                     /label="downshifts"
     downshifts      complement(1321133)
                     /Source="Nicolas_upshifts"
                     /id="D756"
                     /incds=1
                     /nref=1
                     /ntot=19
                     /MaxReadThrough="8.03566"
                     /MaxDrop="4.69358"
                     /score="21.3673767"
                     /energy="-12.4"
                     /TU="U1111"
                     /idTUdmin="U1111"
                     /TUdmin="-550"
                     /isTUend="FALSE"
                     /label="downshifts"
     CDS             complement(1321409..1322221)
                     /gene="motA"
                     /locus_tag="BSU_13690"
                     /old_locus_tag="BSU13690"
                     /function="16.5: Explore"
                     /experiment="publication(s) with functional evidences,
                     PMID:16095621, 18566286, 24296669, 24771657, 25273986"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 16095621, 18566286,
                     24296669, 24771657, 25273986; Product type f: factor"
                     /codon_start=1
                     /transl_table=11
                     /product="motility protein A; MotA component of the
                     H+-coupled stator flagellum complex"
                     /protein_id="NP_389252.1"
                     /db_xref="EnsemblGenomes-Gn:BSU13690"
                     /db_xref="EnsemblGenomes-Tr:CAB13242"
                     /db_xref="GOA:P28611"
                     /db_xref="InterPro:IPR000540"
                     /db_xref="InterPro:IPR002898"
                     /db_xref="SubtiList:BG10688"
                     /db_xref="UniProtKB/Swiss-Prot:P28611"
                     /translation="MDKTSLIGIILAFVALSVGMVLKGVSFSALANPAAILIIIAGTI
                     SAVVIAFPTKEIKKVPTLFRVLFKENKQLTIEELIPMFSEWAQLARREGLLALEASIE
                     DVDDAFLKNGLSMAVDGQSAEFIRDIMTEEVEAMEDRHQAGAAIFTQAGTYAPTLGVL
                     GAVIGLIAALSHMDNTDELGHAISAAFVATLLGIFTGYVLWHPFANKLKRKSKQEVKL
                     REVMIEGVLSVLEGQAPKVIEQKLLMYLPAKDRLKFAEQGEAQNGEKKEEEA*"
                     /label="motA CDS"
     gene            complement(1321409..1322221)
                     /gene="motA"
                     /locus_tag="BSU_13690"
                     /old_locus_tag="BSU13690"
                     /label="motA gene"
     promotor_-10    complement(1322252..1322270)
                     /Source="Nicolas_upshift_promotors"
                     /id="U1111"
                     /multdbtbs="SigD"
                     /comp="M10"
                     /sig="SigD"
                     /pcomp=1
                     /psig=1
                     /xcortree=2801
                     /SigmaFactorBS="tcttccttgaatatttcatgaacaaattcacaatgtcCCTAA
                     AGTtccgggcaccaaaACCGATATTAACCATAGACaagctagtaaaaaaggatttggt
                     g"
                     /listShort="motA, motB"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(1322268)
                     /Source="Nicolas_upshifts"
                     /id="U1111"
                     /multdbtbs="SigD"
                     /comp="M10"
                     /sig="SigD"
                     /pcomp=1
                     /psig=1
                     /xcortree=2801
                     /SigmaFactorBS="tcttccttgaatatttcatgaacaaattcacaatgtcCCTAA
                     AGTtccgggcaccaaaACCGATATTAACCATAGACaagctagtaaaaaaggatttggt
                     g"
                     /listShort="motA, motB"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(1322284..1322291)
                     /Source="Nicolas_upshift_promotors"
                     /id="U1111"
                     /multdbtbs="SigD"
                     /comp="M10"
                     /sig="SigD"
                     /pcomp=1
                     /psig=1
                     /xcortree=2801
                     /SigmaFactorBS="tcttccttgaatatttcatgaacaaattcacaatgtcCCTAA
                     AGTtccgggcaccaaaACCGATATTAACCATAGACaagctagtaaaaaaggatttggt
                     g"
                     /listShort="motA, motB"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     S_feature       complement(1322359..1322581)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1435383_1435605_c"
                     /HighExp="Diami, dia15, dia5, Heat, Etha, LPhT, H2O2, C30,
                     G135, S7"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="0.93062599999999995"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.671"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S491"
     downshifts      complement(1322391)
                     /Source="Nicolas_upshifts"
                     /id="D757"
                     /incds=0
                     /nref=5
                     /ntot=12
                     /MaxReadThrough="0.48394"
                     /MaxDrop="4.60081"
                     /score="30.9355071"
                     /energy="-15.4"
                     /TU="NA"
                     /idTUdmin="U1112"
                     /TUdmin="-4"
                     /isTUend="TRUE"
                     /label="downshifts"
     CDS             complement(1322604..1324703)
                     /gene="clpE"
                     /locus_tag="BSU_13700"
                     /old_locus_tag="BSU13700"
                     /function="16.3: Control"
                     /function="16.6: Maintain"
                     /function="16.8: Protect"
                     /experiment="publication(s) with functional evidences,
                     PMID:9987115, 10320580, 11069659, 14679237, 16788169,
                     16899079, 18689473, 19226326, 21208299, 28333276"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 9987115, 10320580,
                     11069659, 14679237, 16788169, 16899079, 18689473,
                     19226326, 21208299, 28333276; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent Clp protease (class III stress
                     gene)"
                     /protein_id="NP_389253.1"
                     /db_xref="EnsemblGenomes-Gn:BSU13700"
                     /db_xref="EnsemblGenomes-Tr:CAB13243"
                     /db_xref="GOA:O31673"
                     /db_xref="InterPro:IPR001270"
                     /db_xref="InterPro:IPR001943"
                     /db_xref="InterPro:IPR003593"
                     /db_xref="InterPro:IPR003959"
                     /db_xref="InterPro:IPR018368"
                     /db_xref="InterPro:IPR019489"
                     /db_xref="InterPro:IPR027417"
                     /db_xref="InterPro:IPR028299"
                     /db_xref="SubtiList:BG12578"
                     /db_xref="UniProtKB/Swiss-Prot:O31673"
                     /translation="MRCQHCHQNEATIRLNMQINSVHKQMVLCETCYNELTRKPSMSM
                     GPQSFGFPFEQAFQPKEQSAAKQSEKKGLLDELAQNITNGAKAGLIDPVIGRDDEVAR
                     VIEILNRRNKNNPVLIGEPGVGKTAIAEGLALKIAEGDVPNKLKNKELYLLDVASLVA
                     NTGIRGQFEERMKQLITELKERKNVILFIDEIHLLVGAGSAEGSMDAGNILKPALARG
                     ELQVIGATTLKEYRQIEKDAALERRFQPVMVQEPSIEQAILILQGIKDKYEAYHGVTF
                     SDEAIKACVTLSSRYIQDRHLPDKAIDLLDEAGSKANLLIDELNDEDAAERLTAIEAE
                     KTKALEEENYELAAKLRDEELALEKKLNSSSAHTAVTVEAEHIQEIVEQKTGIPVGKL
                     QADEQTKMKELEAKLHERVIGQEAAVQKVAKAVRRSRAGLKSKNRPVGSFLFVGPTGV
                     GKTELSKTLADELFGTKDAIIRLDMSEYMEKHAVSKIIGSPPGYVGHEEAGQLTEKVR
                     RNPYSIVLLDEIEKAHPDVQHMFLQIMEDGRLTDSQGRTVSFKDTVIIMTSNAGAGEK
                     QTKVGFQSDDSVIEEQTLIDSLSMFFKPEFLNRFDSIIEFRSLEKEHLVKIVSLLLGE
                     LEETLAERGISLNVTDEAKEKIAELGYHPSFGARPLRRTIQEWVEDEMTDLLLDNGEI
                     TSFHVILEDDKIKVRAK*"
                     /label="clpE CDS"
     gene            complement(1322604..1324703)
                     /gene="clpE"
                     /locus_tag="BSU_13700"
                     /old_locus_tag="BSU13700"
                     /label="clpE gene"
     downshifts      complement(1322626)
                     /Source="Nicolas_upshifts"
                     /id="D758"
                     /incds=0
                     /nref=27
                     /ntot=132
                     /MaxReadThrough="4.1802"
                     /MaxDrop="6.07862"
                     /score="41.2563375"
                     /energy="-13.6"
                     /TU="U1112"
                     /idTUdmin="U1112"
                     /TUdmin="-239"
                     /isTUend="FALSE"
                     /label="downshifts"
     S_feature       complement(1324704..1324954)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1437728_1437978_c"
                     /HighExp="dia5, Heat, Diami, LPhT, dia15, H2O2, HiTm, S2,
                     Cold, S1"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.671"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S492"
     promotor_no_box complement(1324914..1325014)
                     /Source="Nicolas_upshift_promotors"
                     /id="U1112"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.437562437562438"
                     /psig="0.671328671328671"
                     /xcortree=2025
                     /SigmaFactorBS="atgagacaagttccttgaaaagacgaagaaaacatgttttac
                     tttgtaacaaatcaaaaatttttgtgcataagacttgaaagtcaaagatagtcagagt
                     a"
                     /listShort="S492, clpE, S491"
                     /GFF_Attribute="listLong"
                     /label="promotor_no_box"
     upshifts        complement(1324954)
                     /Source="Nicolas_upshifts"
                     /id="U1112"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.437562437562438"
                     /psig="0.671328671328671"
                     /xcortree=2025
                     /SigmaFactorBS="atgagacaagttccttgaaaagacgaagaaaacatgttttac
                     tttgtaacaaatcaaaaatttttgtgcataagacttgaaagtcaaagatagtcagagt
                     a"
                     /listShort="S492, clpE, S491"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    1324990..1324995
                     /Source="Nicolas_upshift_promotors"
                     /id="U1113"
                     /multdbtbs="SigE"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.999000999001"
                     /psig="0.999000999001"
                     /xcortree=984
                     /SigmaFactorBS="tgcacaaaaatttttgatttgttacaaagtaaaacatgtttt
                     cttCGTCTTttcaaggaacttgtcTCATAGGTTATAAAAAGGCatatatggacaaaac
                     t"
                     /listShort="ykvI, S493"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     upshifts        1325005
                     /Source="Nicolas_upshifts"
                     /id="U1113"
                     /multdbtbs="SigE"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.999000999001"
                     /psig="0.999000999001"
                     /xcortree=984
                     /SigmaFactorBS="tgcacaaaaatttttgatttgttacaaagtaaaacatgtttt
                     cttCGTCTTttcaaggaacttgtcTCATAGGTTATAAAAAGGCatatatggacaaaac
                     t"
                     /listShort="ykvI, S493"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-10    1325011..1325029
                     /Source="Nicolas_upshift_promotors"
                     /id="U1113"
                     /multdbtbs="SigE"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.999000999001"
                     /psig="0.999000999001"
                     /xcortree=984
                     /SigmaFactorBS="tgcacaaaaatttttgatttgttacaaagtaaaacatgtttt
                     cttCGTCTTttcaaggaacttgtcTCATAGGTTATAAAAAGGCatatatggacaaaac
                     t"
                     /listShort="ykvI, S493"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     CDS             1325068..1326111
                     /gene="ykvI"
                     /locus_tag="BSU_13710"
                     /old_locus_tag="BSU13710"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 15383836, 15849754,
                     16850406, 26735940; Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="putative transporter"
                     /protein_id="NP_389254.1"
                     /db_xref="EnsemblGenomes-Gn:BSU13710"
                     /db_xref="EnsemblGenomes-Tr:CAB13244"
                     /db_xref="GOA:O31674"
                     /db_xref="SubtiList:BG13311"
                     /db_xref="UniProtKB/Swiss-Prot:O31674"
                     /translation="MEQSKGSASQLAFVYVGTVVGAGFATGREIVEFFLKFGWFGFFG
                     ILVSGGMFTLLGAKLMIISKRINAKSYQEMNIFLFGATAGRIINVFMLFVLLGVTSVM
                     LSGAGALFEEQLGMSAQIGMLITIGLSLIVMTRGVKGIFGVNVFVVPLLIIFSMIVVA
                     DSFIFSESRNAAQWVWPHRWDWLLSAVSYGALNLSLAQAVLVPLANEMSSEKVIKKGA
                     LIGGTMLTIVLSASFLSLSTLPDVFLYDIPMAQVVYLFARSVHLIYLLIIFGEVFTSV
                     IGNLYGLEKQVQSFLPVKSKYIFAAIMITAYITSQIGYGRLISTIYPLFGYVSLAFIG
                     ALLCKKAPRRRSL*"
                     /label="ykvI CDS"
     gene            1325068..1326111
                     /gene="ykvI"
                     /locus_tag="BSU_13710"
                     /old_locus_tag="BSU13710"
                     /label="ykvI gene"
     S_feature       1326112..1326203
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1439136_1439227"
                     /HighExp="S3, LoTm, S4, S5, BT, M9-stat, S6, T5.0H, T4.0H,
                     Pyr"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigEF"
                     /TUshortPSig="0.999"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S493"
     promotor_-35    1326180..1326184
                     /Source="Nicolas_upshift_promotors"
                     /id="U1114"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.906093906093906"
                     /psig=1
                     /xcortree=2483
                     /SigmaFactorBS="cgataattgatctaggaaccggggactgactttttTATTGtc
                     aagaaaaacatcatTATGGTAAGATAGCAGAAGTgaaaaaattgaagaaaatccgtgc
                     g"
                     /listShort="NA, S494, queC, queD, queE, queF, S495"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    1326201..1326220
                     /Source="Nicolas_upshift_promotors"
                     /id="U1114"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.906093906093906"
                     /psig=1
                     /xcortree=2483
                     /SigmaFactorBS="cgataattgatctaggaaccggggactgactttttTATTGtc
                     aagaaaaacatcatTATGGTAAGATAGCAGAAGTgaaaaaattgaagaaaatccgtgc
                     g"
                     /listShort="NA, S494, queC, queD, queE, queF, S495"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        1326205
                     /Source="Nicolas_upshifts"
                     /id="U1114"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.906093906093906"
                     /psig=1
                     /xcortree=2483
                     /SigmaFactorBS="cgataattgatctaggaaccggggactgactttttTATTGtc
                     aagaaaaacatcatTATGGTAAGATAGCAGAAGTgaaaaaattgaagaaaatccgtgc
                     g"
                     /listShort="NA, S494, queC, queD, queE, queF, S495"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     misc_RNA        1326250..1326294
                     /gene="qswA"
                     /locus_tag="BSU_misc_RNA_22"
                     /product="preQ1 riboswitch"
                     /experiment="publication(s) with functional evidences,
                     PMID:17384645, 19234468, 19285444, 20534493, 21410253,
                     21592962, 24798077, 27484311"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 17384645, 19234468,
                     19285444, 20534493, 21410253, 21592962, 24798077,
                     27484311; Product type n: RNA"
                     /function="16.3: Control"
                     /label="qswA RNA"
     gene            1326250..1326294
                     /gene="qswA"
                     /locus_tag="BSU_misc_RNA_22"
                     /label="qswA gene"
     downshifts      1326271
                     /Source="Nicolas_upshifts"
                     /id="D759"
                     /incds=0
                     /nref=11
                     /ntot=17
                     /MaxReadThrough="7.29177"
                     /MaxDrop="4.09959"
                     /score="21.1398563"
                     /energy="-9.5"
                     /TU="U1114"
                     /idTUdmin="U1113"
                     /TUdmin=0
                     /isTUend="TRUE"
                     /label="downshifts"
     S_feature       1326316..1326423
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1439340_1439447"
                     /HighExp="Paraq, ferm, G180, LBGstat, Diami, H2O2, LPhT,
                     Oxctl, G135, G150"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig=1
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S494"
     CDS             1326424..1327083
                     /gene="queC"
                     /locus_tag="BSU_13720"
                     /old_locus_tag="BSU13720"
                     /EC_number="6.3.4.20"
                     /function="16.2: Construct biomass (Anabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:14660578, 16199558, 17384645, 18491386, 19354300"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 14660578, 16199558,
                     17384645, 18491386, 19354300; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="pre-queuosine 0 synthase"
                     /protein_id="NP_389255.1"
                     /db_xref="EnsemblGenomes-Gn:BSU13720"
                     /db_xref="EnsemblGenomes-Tr:CAB13245"
                     /db_xref="GOA:O31675"
                     /db_xref="InterPro:IPR014729"
                     /db_xref="InterPro:IPR018317"
                     /db_xref="PDB:3BL5"
                     /db_xref="SubtiList:BG13312"
                     /db_xref="UniProtKB/Swiss-Prot:O31675"
                     /translation="MKKEKAIVVFSGGQDSTTCLLWALKEFEEVETVTFHYNQRHSQE
                     VEVAKSIAEKLGVKNHLLDMSLLNQLAPNALTRNDIEIEVKDGELPSTFVPGRNLVFL
                     SFASILAYQIGARHIITGVCETDFSGYPDCRDEFVKSCNVTVNLAMEKPFVIHTPLMW
                     LNKAETWKLADELGALDFVKNNTLTCYNGIIADGCGECPACHLRSKGYEEYMVMKGER
                     A*"
                     /label="queC CDS"
     gene            1326424..1327083
                     /gene="queC"
                     /locus_tag="BSU_13720"
                     /old_locus_tag="BSU13720"
                     /label="queC gene"
     CDS             1327076..1327525
                     /gene="queD"
                     /locus_tag="BSU_13730"
                     /old_locus_tag="BSU13730"
                     /EC_number="4.1.2.50"
                     /function="16.2: Construct biomass (Anabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:12123838, 14660578, 16199558, 18259064, 19231875"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 12123838, 14660578,
                     16199558, 18259064, 19231875; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="6-carboxy-5,6,7,8-tetrahydropterin synthase;
                     queuosine biosynthesis"
                     /protein_id="NP_389256.1"
                     /db_xref="EnsemblGenomes-Gn:BSU13730"
                     /db_xref="EnsemblGenomes-Tr:CAB13246"
                     /db_xref="GOA:O31676"
                     /db_xref="InterPro:IPR007115"
                     /db_xref="SubtiList:BG13313"
                     /db_xref="UniProtKB/Swiss-Prot:O31676"
                     /translation="MHKLLSQIYPQAQHPYSFELNKDMHISAAHFIPRESAGACSRVH
                     GHTYTVNITVAGDELDDSGFLVNFSVLKKLVHGNYDHTLLNDHEDFSQDDRYSLPTTE
                     VVAKTIYDNVQAYLDTLENKPTCVQVFVRETPTSYCVYRPKKGGLNG*"
                     /label="queD CDS"
     gene            1327076..1327525
                     /gene="queD"
                     /locus_tag="BSU_13730"
                     /old_locus_tag="BSU13730"
                     /label="queD gene"
     CDS             1327518..1328249
                     /gene="queE"
                     /locus_tag="BSU_13740"
                     /old_locus_tag="BSU13740"
                     /EC_number="4.3.99.3"
                     /function="16.2: Construct biomass (Anabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:12123838, 14660578, 16199558, 19354300, 23194065"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 12123838, 14660578,
                     16199558, 19354300, 23194065; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="7-carboxy-7-deazaguanine synthase"
                     /protein_id="NP_389257.1"
                     /db_xref="EnsemblGenomes-Gn:BSU13740"
                     /db_xref="EnsemblGenomes-Tr:CAB13247"
                     /db_xref="GOA:O31677"
                     /db_xref="InterPro:IPR007197"
                     /db_xref="InterPro:IPR017742"
                     /db_xref="InterPro:IPR023404"
                     /db_xref="InterPro:IPR024924"
                     /db_xref="PDB:5TGS"
                     /db_xref="PDB:5TH5"
                     /db_xref="SubtiList:BG13314"
                     /db_xref="UniProtKB/Swiss-Prot:O31677"
                     /translation="MAKGIPVLEIFGPTIQGEGMVIGQKTMFVRTAGCDYSCSWCDSA
                     FTWDGSAKKDIRWMTAEEIFAELKDIGGDAFSHVTISGGNPALLKQLDAFIELLKENN
                     IRAALETQGTVYQDWFTLIDDLTISPKPPSSKMVTNFQKLDHILTSLQENDRQHAVSL
                     KVVIFNDEDLEFAKTVHKRYPGIPFYLQVGNDDVHTTDDQSLIAHLLGKYEALVDKVA
                     VDAELNLVRVLPQLHTLLWGNKRGV*"
                     /label="queE CDS"
     gene            1327518..1328249
                     /gene="queE"
                     /locus_tag="BSU_13740"
                     /old_locus_tag="BSU13740"
                     /label="queE gene"
     CDS             1328267..1328764
                     /gene="queF"
                     /locus_tag="BSU_13750"
                     /old_locus_tag="BSU13750"
                     /EC_number="1.7.1.13"
                     /function="10.3: tRNA and rRNA base modification"
                     /function="16.2: Construct biomass (Anabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:12123838, 14660578, 16199558, 17929836, 22938038,
                     23410922, 28300774"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 12123838, 14660578,
                     16199558, 17929836, 22938038, 23410922, 28300774; Product
                     type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="NADPH-dependent 7-cyano-7-deazaguanine
                     reductase"
                     /protein_id="NP_389258.1"
                     /db_xref="EnsemblGenomes-Gn:BSU13750"
                     /db_xref="EnsemblGenomes-Tr:CAB13248"
                     /db_xref="GOA:O31678"
                     /db_xref="InterPro:IPR016856"
                     /db_xref="InterPro:IPR029500"
                     /db_xref="PDB:4F8B"
                     /db_xref="PDB:4FGC"
                     /db_xref="PDB:5UDG"
                     /db_xref="SubtiList:BG13315"
                     /db_xref="UniProtKB/Swiss-Prot:O31678"
                     /translation="MTTRKESELEGVTLLGNQGTNYLFEYAPDVLESFPNKHVNRDYF
                     VKFNCPEFTSLCPKTGQPDFATIYISYIPDEKMVESKSLKLYLFSFRNHGDFHEDCMN
                     IIMNDLIELMDPRYIEVWGKFTPRGGISIDPYTNYGKPGTKYEKMAEYRMMNHDLYPE
                     TIDNR*"
                     /label="queF CDS"
     gene            1328267..1328764
                     /gene="queF"
                     /locus_tag="BSU_13750"
                     /old_locus_tag="BSU13750"
                     /label="queF gene"
     S_feature       1328765..1329041
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1441789_1442065"
                     /HighExp="Paraq, ferm, LPhT, C30, G135, G180, LBGstat,
                     Oxctl, G150, Diami"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig=1
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S495"
     downshifts      1328999
                     /Source="Nicolas_upshifts"
                     /id="D760"
                     /incds=0
                     /nref=200
                     /ntot=247
                     /MaxReadThrough="1.17154"
                     /MaxDrop="6.60953"
                     /score="11.1883045"
                     /energy="-7.8"
                     /TU="NA"
                     /idTUdmin="U1114"
                     /TUdmin=0
                     /isTUend="TRUE"
                     /label="downshifts"
     downshifts      complement(1329009)
                     /Source="Nicolas_upshifts"
                     /id="D761"
                     /incds=0
                     /nref=1
                     /ntot=4
                     /MaxReadThrough="1.54726"
                     /MaxDrop="2.16508"
                     /score="6.24357423"
                     /energy="-7.6"
                     /TU="NA"
                     /idTUdmin="U1115"
                     /TUdmin=110
                     /isTUend="FALSE"
                     /label="downshifts"
     S_feature       complement(1329078..1329322)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1442102_1442346_c"
                     /HighExp="Diami, dia5, LPhT, Etha, Salt, dia15, Heat,
                     HiTm, C30, HiOs"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="0.15795400000000001"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.997"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S496"
     downshifts      complement(1329119)
                     /Source="Nicolas_upshifts"
                     /id="D762"
                     /incds=0
                     /nref=47
                     /ntot=193
                     /MaxReadThrough="2.13712"
                     /MaxDrop="5.08206"
                     /score="6.24357423"
                     /energy="-7.6"
                     /TU="NA"
                     /idTUdmin="U1115"
                     /TUdmin=0
                     /isTUend="TRUE"
                     /label="downshifts"
     CDS             complement(1329323..1329679)
                     /gene="ykvN"
                     /locus_tag="BSU_13760"
                     /old_locus_tag="BSU13760"
                     /function="16.3: Control"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 16683018; Product type
                     r: regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="putative transcriptional regulator (HGT island)"
                     /protein_id="NP_389259.1"
                     /db_xref="EnsemblGenomes-Gn:BSU13760"
                     /db_xref="EnsemblGenomes-Tr:CAB13249"
                     /db_xref="GOA:O31679"
                     /db_xref="InterPro:IPR002577"
                     /db_xref="InterPro:IPR036388"
                     /db_xref="InterPro:IPR036390"
                     /db_xref="SubtiList:BG13316"
                     /db_xref="UniProtKB/Swiss-Prot:O31679"
                     /translation="MKKFSCGFEVTKEVIGGKWKGLVLYFLMNGPKRTSELKRIIPNI
                     TQKMLIQTLRELEASGLVSRKMYNQVPPKVEYSSTELGESLKPILQELCQWGGYYAEQ
                     EYAEGEYEIVQPEQLS*"
                     /label="ykvN CDS"
     gene            complement(1329323..1329679)
                     /gene="ykvN"
                     /locus_tag="BSU_13760"
                     /old_locus_tag="BSU13760"
                     /label="ykvN gene"
     misc_feature    complement(1329710..1329729)
                     /Source="Nicolas_upshift_promotors"
                     /id="U1115"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.727272727272727"
                     /psig="0.997002997002997"
                     /xcortree=1897
                     /SigmaFactorBS="acaacttacaagatatagtatccttcagtaagcacattatcg
                     gaagtacccactttttTGTGATATAGTAACTAAAAAgtaataaatgtggaatggagag
                     c"
                     /listShort="ykvN, S496"
                     /GFF_Attribute="listLong"
                     /label="promotor_single_box"
                     /note="Geneious type: promotor_single_box"
     upshifts        complement(1329727)
                     /Source="Nicolas_upshifts"
                     /id="U1115"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.727272727272727"
                     /psig="0.997002997002997"
                     /xcortree=1897
                     /SigmaFactorBS="acaacttacaagatatagtatccttcagtaagcacattatcg
                     gaagtacccactttttTGTGATATAGTAACTAAAAAgtaataaatgtggaatggagag
                     c"
                     /listShort="ykvN, S496"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-10    1329764..1329782
                     /Source="Nicolas_upshift_promotors"
                     /id="U1116"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.313686313686314"
                     /psig="0.954045954045954"
                     /xcortree=1793
                     /SigmaFactorBS="ctttttagttactatatcacaaaaaagtgggtacttCcgata
                     atgtgcttactgaAGGATACTATATCTTGTAAgttgttcttcaagtacttaaaggtac
                     t"
                     /listShort="ykvO"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        1329769
                     /Source="Nicolas_upshifts"
                     /id="U1116"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.313686313686314"
                     /psig="0.954045954045954"
                     /xcortree=1793
                     /SigmaFactorBS="ctttttagttactatatcacaaaaaagtgggtacttCcgata
                     atgtgcttactgaAGGATACTATATCTTGTAAgttgttcttcaagtacttaaaggtac
                     t"
                     /listShort="ykvO"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             1329848..1330594
                     /gene="ykvO"
                     /locus_tag="BSU_13770"
                     /old_locus_tag="BSU13770"
                     /EC_number="1.-.-.-"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 16683018, 26494135;
                     Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative oxidoreductase (HGT island)"
                     /protein_id="NP_389260.1"
                     /db_xref="EnsemblGenomes-Gn:BSU13770"
                     /db_xref="EnsemblGenomes-Tr:CAB13250"
                     /db_xref="GOA:O31680"
                     /db_xref="InterPro:IPR002347"
                     /db_xref="InterPro:IPR036291"
                     /db_xref="SubtiList:BG13317"
                     /db_xref="UniProtKB/Swiss-Prot:O31680"
                     /translation="MGKFEGKIALVTGGTSGIGLATAQKFVNEGAYVYITGRRQNELD
                     KAVNQIGKNVTGVQGDISKLEDLDKLYDIIKQEKGKLDILFANAGIGNFLPLGEITEE
                     QVDRTFDINVKGTIFTVQKALSLFPDKVGSIIVTGSTAGSIGNPAFSVYGASKAALRA
                     LVRNWILDLKGTEIRVNVVSPGGILTPAYDELFGDALEEVLENSRNTVPAGKVGTPEE
                     VANAVSFLASDESSYLTGVELFVDGGLAQV*"
                     /label="ykvO CDS"
     gene            1329848..1330594
                     /gene="ykvO"
                     /locus_tag="BSU_13770"
                     /old_locus_tag="BSU13770"
                     /label="ykvO gene"
     downshifts      1330649
                     /Source="Nicolas_upshifts"
                     /id="D763"
                     /incds=0
                     /nref=19
                     /ntot=146
                     /MaxReadThrough="0.723690000000001"
                     /MaxDrop="4.37163"
                     /score="1.34631843"
                     /energy="-9.1"
                     /TU="NA"
                     /idTUdmin="U1116"
                     /TUdmin=0
                     /isTUend="TRUE"
                     /label="downshifts"
     promotor_-35    1330997..1331005
                     /Source="Nicolas_upshift_promotors"
                     /id="U1117"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp="0.997002997002997"
                     /psig="0.997002997002997"
                     /xcortree=1420
                     /SigmaFactorBS="tctcgtgatctcacacctgaacgttttttatagaCTAGTACC
                     GcgacaagttatatTACATATACATACCAATAAAgtagacattaaaaagtgaaagaga
                     g"
                     /listShort="ykvP, ykzQ, S497, ykvQ, ykzR"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    1331019..1331038
                     /Source="Nicolas_upshift_promotors"
                     /id="U1117"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp="0.997002997002997"
                     /psig="0.997002997002997"
                     /xcortree=1420
                     /SigmaFactorBS="tctcgtgatctcacacctgaacgttttttatagaCTAGTACC
                     GcgacaagttatatTACATATACATACCAATAAAgtagacattaaaaagtgaaagaga
                     g"
                     /listShort="ykvP, ykzQ, S497, ykvQ, ykzR"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        1331023
                     /Source="Nicolas_upshifts"
                     /id="U1117"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp="0.997002997002997"
                     /psig="0.997002997002997"
                     /xcortree=1420
                     /SigmaFactorBS="tctcgtgatctcacacctgaacgttttttatagaCTAGTACC
                     GcgacaagttatatTACATATACATACCAATAAAgtagacattaaaaagtgaaagaga
                     g"
                     /listShort="ykvP, ykzQ, S497, ykvQ, ykzR"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             1331075..1332274
                     /gene="ykvP"
                     /locus_tag="BSU_13780"
                     /old_locus_tag="BSU13780"
                     /function="16.8: Protect"
                     /function="16.13: Shape"
                     /experiment="publication(s) with functional evidences,
                     PMID:11011148, 16683018"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 11011148, 16683018;
                     Product type cp: cell process"
                     /codon_start=1
                     /transl_table=11
                     /product="spore protein (HGT island)"
                     /protein_id="NP_389261.1"
                     /db_xref="EnsemblGenomes-Gn:BSU13780"
                     /db_xref="EnsemblGenomes-Tr:CAB13251"
                     /db_xref="GOA:O31681"
                     /db_xref="InterPro:IPR018392"
                     /db_xref="InterPro:IPR036779"
                     /db_xref="SubtiList:BG13318"
                     /db_xref="UniProtKB/Swiss-Prot:O31681"
                     /translation="MKILFLESHPMWLYGLPNGFREAGHTVMISGPVSRENITEMIDE
                     FKPDLIVSMGWTPEHSREKQAWIRNATKKVNIPLVYWATEDPLHTQNFTIPLIKKMKP
                     DFVFTVTPSLCKTYESMGIKAAHLDFAFHESIHHQIKPLAKYSCDIAVVANAYPNFLE
                     EHPEVFRSSSLKTLIRPLIRKGIRIDFWGRNWEKMSKYIGREIPRNWIHGYLDYTEAY
                     KVYSSAKIIIGLQNCESQLTQRTYEILGSGGFLLTSDTPAVRGKFKPGRDLIVSSSPK
                     ETLEKVKYYLNHDSERKKIQINGKKAVKNDSYRHRAERMLEVLKSRGIIRNLGETIHY
                     VDVLKEKYVIHHVTPGETLSIIASKYNVSLQQLMELNHFKSDQIYAGQIIKIREKLFR
                     NINNKLF*"
                     /label="ykvP CDS"
     gene            1331075..1332274
                     /gene="ykvP"
                     /locus_tag="BSU_13780"
                     /old_locus_tag="BSU13780"
                     /label="ykvP gene"
     promotor_-35    1331157..1331163
                     /Source="Nicolas_upshift_promotors"
                     /id="U1118"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp="0.999000999001"
                     /psig="0.999000999001"
                     /xcortree=152
                     /SigmaFactorBS="cgaatgggtttagggaagcaggacataccgtaaTGATTTCcg
                     gtcctgtaagtcGGGAAAATATAACTGAAATgatagacgaatttaaaccagatttaat
                     a"
                     /listShort="ykzQ, S497, ykvQ"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    1331178..1331196
                     /Source="Nicolas_upshift_promotors"
                     /id="U1118"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp="0.999000999001"
                     /psig="0.999000999001"
                     /xcortree=152
                     /SigmaFactorBS="cgaatgggtttagggaagcaggacataccgtaaTGATTTCcg
                     gtcctgtaagtcGGGAAAATATAACTGAAATgatagacgaatttaaaccagatttaat
                     a"
                     /listShort="ykzQ, S497, ykvQ"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        1331184
                     /Source="Nicolas_upshifts"
                     /id="U1118"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp="0.999000999001"
                     /psig="0.999000999001"
                     /xcortree=152
                     /SigmaFactorBS="cgaatgggtttagggaagcaggacataccgtaaTGATTTCcg
                     gtcctgtaagtcGGGAAAATATAACTGAAATgatagacgaatttaaaccagatttaat
                     a"
                     /listShort="ykzQ, S497, ykvQ"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    1332243..1332245
                     /Source="Nicolas_upshift_promotors"
                     /id="U1119"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.346653346653347"
                     /psig="0.602397602397602"
                     /xcortree=2158
                     /SigmaFactorBS="acaaatcattaagattagagagaaacTGTttagaaatattaa
                     taacaaATTATTCTAAAGGAGAGTAatatgaatgaaggggaaaatacctaaaataaga
                     a"
                     /listShort="ykzQ, S497, ykvQ"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    1332265..1332283
                     /Source="Nicolas_upshift_promotors"
                     /id="U1119"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.346653346653347"
                     /psig="0.602397602397602"
                     /xcortree=2158
                     /SigmaFactorBS="acaaatcattaagattagagagaaacTGTttagaaatattaa
                     taacaaATTATTCTAAAGGAGAGTAatatgaatgaaggggaaaatacctaaaataaga
                     a"
                     /listShort="ykzQ, S497, ykvQ"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        1332277
                     /Source="Nicolas_upshifts"
                     /id="U1119"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.346653346653347"
                     /psig="0.602397602397602"
                     /xcortree=2158
                     /SigmaFactorBS="acaaatcattaagattagagagaaacTGTttagaaatattaa
                     taacaaATTATTCTAAAGGAGAGTAatatgaatgaaggggaaaatacctaaaataaga
                     a"
                     /listShort="ykzQ, S497, ykvQ"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             1332290..1332517
                     /gene="ykzQ"
                     /locus_tag="BSU_13789"
                     /old_locus_tag="BSU13789"
                     /function="16.13: Shape"
                     /function="16.8: Protect"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; Product type f: factor"
                     /codon_start=1
                     /transl_table=11
                     /product="putative peptidoglycan binding protein"
                     /protein_id="YP_003097719.1"
                     /db_xref="EnsemblGenomes-Gn:BSU13789"
                     /db_xref="EnsemblGenomes-Tr:CAX52610"
                     /db_xref="InterPro:IPR018392"
                     /db_xref="InterPro:IPR036779"
                     /db_xref="UniProtKB/Swiss-Prot:C0H403"
                     /translation="MKGKIPKIRNQANKVKRTPRYMEFPVTYEVYHVESGDTLWTIAK
                     SFEIPVQQLMNLNKLSSDRIYPGQIIKIRER*"
                     /label="ykzQ CDS"
     gene            1332290..1332517
                     /gene="ykzQ"
                     /locus_tag="BSU_13789"
                     /old_locus_tag="BSU13789"
                     /label="ykzQ gene"
     misc_feature    complement(1332367..1332386)
                     /Source="Nicolas_upshift_promotors"
                     /id="U1120"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.937062937062937"
                     /psig="0.982017982017982"
                     /xcortree=2163
                     /SigmaFactorBS="ggaatttcaaaggatttggcaatcgtccataatgtatcgccg
                     gattccaCATGATATACTTCGTATGTCacgggaaattccatataacgaggcgttcttt
                     t"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_single_box"
                     /note="Geneious type: promotor_single_box"
     upshifts        complement(1332375)
                     /Source="Nicolas_upshifts"
                     /id="U1120"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.937062937062937"
                     /psig="0.982017982017982"
                     /xcortree=2163
                     /SigmaFactorBS="ggaatttcaaaggatttggcaatcgtccataatgtatcgccg
                     gattccaCATGATATACTTCGTATGTCacgggaaattccatataacgaggcgttcttt
                     t"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     S_feature       1332518..1332613
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1445542_1445637"
                     /HighExp="BT, S8, B36, S7, Etha, S6, G/S, LBGstat, Pyr,
                     Salt"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA, SigB, SigK"
                     /TUshortPSig="0.602, 0.999, 0.997"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S497"
     CDS             1332614..1333312
                     /gene="ykvQ"
                     /locus_tag="BSU_13790"
                     /old_locus_tag="BSU13790"
                     /EC_number="3.2.-.-"
                     /function="16.8: Protect"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 16683018; Product type
                     e: enzyme"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="putative sporulation-specific glycosylase (HGT
                     island)"
                     /db_xref="EnsemblGenomes-Gn:BSU13790"
                     /db_xref="EnsemblGenomes-Tr:CAB13252"
                     /db_xref="GOA:O31682"
                     /db_xref="InterPro:IPR001223"
                     /db_xref="InterPro:IPR011583"
                     /db_xref="InterPro:IPR017853"
                     /db_xref="PSEUDO:CAB13252.1"
                     /db_xref="SubtiList:BG13319"
                     /db_xref="UniProtKB/Swiss-Prot:O31682"
                     /translation="MFQMSYYYSGLGWDFIQHVDQTNGVLNVVSPDFFYIRKDGSLLL
                     RSANPDVIKALHRRKLKVVPFLSNHWDQDLGRFALMNRVLLAKQISHAIEELDLDGVN
                     IDIENLTEKDRNLFTDFIRLVRKSIPRHKEVSVAVAANPFGWTKGWHGSYDYEYLAKY
                     ADYLMVMAYDESRLAGPTASVGWVEKSIQYVLTQKISPQKLVLGLPFYGRCWMEGQSA
                     SQAIPLYLVVSKKA*"
                     /label="ykvQ CDS"
     gene            1332614..1333312
                     /gene="ykvQ"
                     /locus_tag="BSU_13790"
                     /old_locus_tag="BSU13790"
                     /pseudo
                     /label="ykvQ gene"
     S_feature       complement(1333265..1334091)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1446289_1447115_c"
                     /HighExp="H2O2, M40t90, S8, M40t45, LPhT, Sw, Cold,
                     LBGstat, C30, dia15"
                     /AntisenseName="ykzR"
                     /AntisenseCor="0.170402182980955"
                     /AntisenseRegPval="-2.2999999999999998"
                     /CDS_PredictionProba="0.38670900000000002"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.986"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S498"
     CDS             1333293..1333544
                     /gene="ykzR"
                     /locus_tag="BSU_13799"
                     /old_locus_tag="BSU13799"
                     /function="16.8: Protect"
                     /function="16.13: Shape"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 16683018; Product type
                     e: enzyme"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="putative spore-specific glycosyl hydrolase"
                     /db_xref="EnsemblGenomes-Gn:BSU13799"
                     /db_xref="EnsemblGenomes-Tr:CAX52611"
                     /db_xref="GOA:C0H404"
                     /db_xref="InterPro:IPR017853"
                     /db_xref="PSEUDO:CAX52611.1"
                     /db_xref="UniProtKB/Swiss-Prot:C0H404"
                     /translation="MLVKRHSGTIIFDTKSQSPKAIFTVNHDKKGPLPSGTYTLWFEN
                     EQSLRAKIKLAQKYNLKGLGSWSLGQEDASVWNTVFKNI*"
                     /label="ykzR CDS"
     gene            1333293..1333544
                     /gene="ykzR"
                     /locus_tag="BSU_13799"
                     /old_locus_tag="BSU13799"
                     /pseudo
                     /label="ykzR gene"
     misc_feature    1333794..1333809
                     /Source="Nicolas_upshift_promotors"
                     /id="U1121"
                     /multdbtbs="-"
                     /comp="M18"
                     /sig="SigL"
                     /pcomp="0.516483516483517"
                     /psig="0.516483516483517"
                     /xcortree=2456
                     /SigmaFactorBS="ctgcttccatgatttaatcatacacatgctacttgatAGCAG
                     GGTTATCGCATttcattcagaattgttcaggatcgatatggaagcgcacgactaacta
                     g"
                     /listShort="S499"
                     /GFF_Attribute="listLong"
                     /label="promotor_single_box"
                     /note="Geneious type: promotor_single_box"
     S_feature       1333817..1334028
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1446841_1447052"
                     /HighExp="Diami, S8, dia15, G180, HPh, C30, Paraq, H2O2,
                     Salt, G135"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigL"
                     /TUshortPSig="0.516"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S499"
     upshifts        1333817
                     /Source="Nicolas_upshifts"
                     /id="U1121"
                     /multdbtbs="-"
                     /comp="M18"
                     /sig="SigL"
                     /pcomp="0.516483516483517"
                     /psig="0.516483516483517"
                     /xcortree=2456
                     /SigmaFactorBS="ctgcttccatgatttaatcatacacatgctacttgatAGCAG
                     GGTTATCGCATttcattcagaattgttcaggatcgatatggaagcgcacgactaacta
                     g"
                     /listShort="S499"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     downshifts      1333993
                     /Source="Nicolas_upshifts"
                     /id="D764"
                     /incds=0
                     /nref=2
                     /ntot=72
                     /MaxReadThrough="2.59168"
                     /MaxDrop="2.74537"
                     /score="-4.38958816"
                     /energy="-9"
                     /TU="NA"
                     /idTUdmin="U1121"
                     /TUdmin=0
                     /isTUend="TRUE"
                     /label="downshifts"
     promotor_-10    complement(1334080..1334099)
                     /Source="Nicolas_upshift_promotors"
                     /id="U1122"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.879120879120879"
                     /psig="0.986013986013986"
                     /xcortree=1501
                     /SigmaFactorBS="gttcttaacggttatatgaaccaattcattcgaaaagacaCC
                     TTTACAaacatacgttcgttaAATTATAATAAAACAGACGAgctgccatccagcatcc
                     c"
                     /listShort="S498"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(1334102)
                     /Source="Nicolas_upshifts"
                     /id="U1122"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.879120879120879"
                     /psig="0.986013986013986"
                     /xcortree=1501
                     /SigmaFactorBS="gttcttaacggttatatgaaccaattcattcgaaaagacaCC
                     TTTACAaacatacgttcgttaAATTATAATAAAACAGACGAgctgccatccagcatcc
                     c"
                     /listShort="S498"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     promotor_-35    complement(1334115..1334122)
                     /Source="Nicolas_upshift_promotors"
                     /id="U1122"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.879120879120879"
                     /psig="0.986013986013986"
                     /xcortree=1501
                     /SigmaFactorBS="gttcttaacggttatatgaaccaattcattcgaaaagacaCC
                     TTTACAaacatacgttcgttaAATTATAATAAAACAGACGAgctgccatccagcatcc
                     c"
                     /listShort="S498"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-35    1334167..1334174
                     /Source="Nicolas_upshift_promotors"
                     /id="U1123"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.8001998001998"
                     /psig=1
                     /xcortree=2042
                     /SigmaFactorBS="cgaatgaattggttcatataaccgttaagaacagatTCATTG
                     TAaacattcgctaaggTATGCTAAGATGCATGGACTataaaggagtgatatgaagtga
                     a"
                     /listShort="ykvR"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    1334189..1334208
                     /Source="Nicolas_upshift_promotors"
                     /id="U1123"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.8001998001998"
                     /psig=1
                     /xcortree=2042
                     /SigmaFactorBS="cgaatgaattggttcatataaccgttaagaacagatTCATTG
                     TAaacattcgctaaggTATGCTAAGATGCATGGACTataaaggagtgatatgaagtga
                     a"
                     /listShort="ykvR"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        1334191
                     /Source="Nicolas_upshifts"
                     /id="U1123"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.8001998001998"
                     /psig=1
                     /xcortree=2042
                     /SigmaFactorBS="cgaatgaattggttcatataaccgttaagaacagatTCATTG
                     TAaacattcgctaaggTATGCTAAGATGCATGGACTataaaggagtgatatgaagtga
                     a"
                     /listShort="ykvR"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     CDS             1334227..1334517
                     /gene="ykvR"
                     /locus_tag="BSU_13800"
                     /old_locus_tag="BSU13800"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved hypothetical protein (HGT island)"
                     /protein_id="NP_389263.1"
                     /db_xref="EnsemblGenomes-Gn:BSU13800"
                     /db_xref="EnsemblGenomes-Tr:CAB13253"
                     /db_xref="InterPro:IPR021596"
                     /db_xref="InterPro:IPR023105"
                     /db_xref="PDB:2JN9"
                     /db_xref="SubtiList:BG13320"
                     /db_xref="UniProtKB/Swiss-Prot:O31683"
                     /translation="MKTLRLNNVTLEMAAYQEESEPKRKIAFTLNVTSETYHDIAVLL
                     YEKTFNVEVPERDLAFRGEMTNYSTSLTNLYEPGAVSEFYIEITEIDKNADS*"
                     /label="ykvR CDS"
     gene            1334227..1334517
                     /gene="ykvR"
                     /locus_tag="BSU_13800"
                     /old_locus_tag="BSU13800"
                     /label="ykvR gene"
     S_feature       complement(1334554..1334637)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1447578_1447661_c"
                     /HighExp="Etha, dia5, Salt, SMMPr, Lbtran, dia15, Heat,
                     S4, HiOs, HiTm"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.995"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S500"
     downshifts      complement(1334597)
                     /Source="Nicolas_upshifts"
                     /id="D765"
                     /incds=0
                     /nref=216
                     /ntot=257
                     /MaxReadThrough="2.80569"
                     /MaxDrop="6.83857"
                     /score="21.3524751"
                     /energy="-9.9"
                     /TU="U1124"
                     /idTUdmin="U1126"
                     /TUdmin=0
                     /isTUend="TRUE"
                     /label="downshifts"
     CDS             complement(1334638..1334823)
                     /gene="ykvS"
                     /locus_tag="BSU_13810"
                     /old_locus_tag="BSU13810"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved protein of unknown function (HGT
                     island)"
                     /protein_id="NP_389264.2"
                     /db_xref="EnsemblGenomes-Gn:BSU13810"
                     /db_xref="EnsemblGenomes-Tr:CAB13254"
                     /db_xref="InterPro:IPR018690"
                     /db_xref="SubtiList:BG13321"
                     /db_xref="UniProtKB/Swiss-Prot:O31684"
                     /translation="MKIAKVGNVIEFKNGLTGVVEKVNENSVIVDVTIMDNYRDLELD
                     SLTVVNHKNYKIIRDSY*"
                     /label="ykvS CDS"
     gene            complement(1334638..1334823)
                     /gene="ykvS"
                     /locus_tag="BSU_13810"
                     /old_locus_tag="BSU13810"
                     /label="ykvS gene"
     promotor_-10    complement(1334856..1334875)
                     /Source="Nicolas_upshift_promotors"
                     /id="U1124"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.665334665334665"
                     /psig="0.995004995004995"
                     /xcortree=2222
                     /SigmaFactorBS="aacaattcataagggagataaaactccttatCGCTTTACttc
                     tcaatgaaaaTACTGCAAAATACTTTCAAAaggcattattatgtttaaaggagaggaa
                     g"
                     /listShort="ykvS, S500"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(1334867)
                     /Source="Nicolas_upshifts"
                     /id="U1124"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.665334665334665"
                     /psig="0.995004995004995"
                     /xcortree=2222
                     /SigmaFactorBS="aacaattcataagggagataaaactccttatCGCTTTACttc
                     tcaatgaaaaTACTGCAAAATACTTTCAAAaggcattattatgtttaaaggagaggaa
                     g"
                     /listShort="ykvS, S500"
                     /GFF_Attribute="listLong"
                     /label="upshifts"
     S_feature       complement(1334869..1335213)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1447893_1448237_c"
                     /HighExp="S4, S8, S6, S5, S3, T5.0H, LoTm, S7, T4.0H, BT"
                     /AntisenseName="ykzS"
                     /AntisenseCor="-0.65556958045860303"
                     /AntisenseRegPval="-33.700000000000003"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigEF"
                     /TUshortPSig="0.987"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S501"
     promotor_-35    complement(1334889..1334896)
                     /Source="Nicolas_upshift_promotors"
                     /id="U1124"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.665334665334665"
                     /psig="0.995004995004995"
                     /xcortree=2222
                     /SigmaFactorBS="aacaattcataagggagataaaactccttatCGCTTTACttc
                     tcaatgaaaaTACTGCAAAATACTTTCAAAaggcattattatgtttaaaggagaggaa
                     g"
                     /listShort="ykvS, S500"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-35    1334922..1334927
                     /Source="Nicolas_upshift_promotors"
                     /id="U1125"
                     /multdbtbs="-"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp="0.664335664335664"
                     /psig="0.999000999001"
                     /xcortree=1831