SubtiBank SubtiBank
Version comparison:

Tue Dec 13 2016 11:16:34 GMT+0100 (CET)2025-04-14 06:27:58

locus

BSU23520

BSU_23520

product

transcriptional repressor Fur family

transcriptional repressor [SW|Fur family]

ec

outlinks

bsu

BSU23520

BSU_23520

aminos

MENRIDRIKKQLHSSSYKLTPQREATVRVLLENEEDHLSAEDVYLLVKEKSPEIGLATVYRTLELLTELKVVDKINFGDGVSRYDLRKEGAAHFHHHLVCMECGAVDEIEEDLLEDVEEIIERDWKFKIKDHRLTFHGICHRCNGKETE

[SW|Categories] containing this gene/protein

[SW|acquisition of iron], [SW|iron metabolism], [SW|transcription factors and their control], [SW|glutamate metabolism]

Gene

Coordinates on the chromosome (coding sequence)

2,449,841 -> 2,450,290

Gene

Phenotypes of a mutant

no growth with glucose and ammonium as single sources of carbon and nitrogen, respectively (due to [[protein|FsrA]]-mediated repression of the ''[[protein|gltA]]-[[protein|gltB]]'' operon) [Pubmed|22389480]

poor frowth on lactate as single carbon source (due to overexpression of [SW|FsrA]-mediated repression of the ''[[protein|lutA]]-[[protein|lutB]]-[[protein|lutC]]'' operon, can be suppressed by inactivation of ''[[protein|fsrA]]'' or ''[[protein|fbpB]]'') [Pubmed|22427629]

transcription profile of a ''[[protein|fur]]'' mutant strain: [http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE27416 GEO] [Pubmed|22389480]

no growth with glucose and ammonium as single sources of carbon and nitrogen, respectively (due to [[protein|FsrA]]-mediated repression of the ''[[gene|gltA]]-[[gene|gltB]]'' operon) [Pubmed|22389480]

poor growth on lactate as single carbon source (due to overexpression of [[protein|FsrA]]-mediated repression of the ''[[gene|lutA]]-[[gene|lutB]]-[[gene|lutC]]'' operon, can be suppressed by inactivation of ''[[gene|fsrA]]'' or ''[[gene|fbpB]]'') [Pubmed|22427629]

transcription profile of a ''[[gene|fur]]'' mutant strain: [http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE27416 GEO] [Pubmed|22389480]

The protein

Protein family

[SW|Fur family]

[SW|Fur family] (according to UniProt)

The protein

Paralogous protein(s)

[[protein|PerR]], [[protein|Zur]]

[[this]]

The protein

[SW|Cofactors]

Fe(II)

Fe2+ [pubmed|28938859]

The protein

Effectors of protein activity

DNA binding activity (repression) is triggered by binding of Fe(II) [Pubmed|23057863]

DNA binding activity (repression) is triggered by binding of Fe2+ [Pubmed|23057863]

Expression and Regulation

Operon

''fur'' [Pubmed|12029044]

Expression and Regulation

[SW|Sigma factor]

[[protein|SigA]] [Pubmed|12029044]

Expression and Regulation

Regulation

repressed in the absence of hydrogen peroxide ([[protein|PerR]]) [Pubmed|12029044]

Expression and Regulation

Regulatory mechanism

[[protein|PerR]]: transcription repression [Pubmed|12029044]

Biological materials

Mutant

HB6543 (aphA3), available in the [SW|John Helmann] lab; also available in the [SW|Stülke] lab GP879 (''fur::mls'') and GP868 (''fur::mls'', ''perR::spc'')

1A910 ( ''fur''::''kan''), [Pubmed|12029044], available at [http://pasture.asc.ohio-state.edu/BGSC/getdetail.cfm?bgscid=1A910&Search=1A910 BGSC]

MGNA-C426 (yqkL::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/2424 NBRP B. subtilis, Japan]

HB6543 (aphA3), available in the [SW|John Helmann]'s lab

GP879 (''fur::mls'') and GP868 (''fur::mls'', ''perR::spc''), available in the [SW|Jörg Stülke]'s lab

1A910 ( ''fur''::''kan''), [Pubmed|12029044], available at [http://pasture.asc.ohio-state.edu/BGSC/getdetail.cfm?bgscid=1A910&Search=1A910 BGSC]

BKE23520 (Δ[[gene|fur]]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE23520 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATGTCTTTCCCTCCTACGC, downstream forward: _UP4_TAGACGGTGCCGAGCGCGAA

BKK23520 (Δ[[gene|fur]]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK23520 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATGTCTTTCCCTCCTACGC, downstream forward: _UP4_TAGACGGTGCCGAGCGCGAA

Labs working on this gene/protein

[SW|John Helmann], Cornell University, USA [http://www.micro.cornell.edu/research/labs/helmann-lab/index.cfm Homepage]

References

Reviews

15802251, 25209494, 25160631

15802251, 25209494, 25160631, 28938859

References

The [SW|Fur regulon]

12374814, 12354229, 22389480, 21873409

12374814, 12354229, 22389480, 21873409, 29133393

References

Other original publications

18487332, 14563870, 18697947, 10400588, 11790741, 12207695, 9701813, 12029044, 22427629, 17725565, 17012385, 12950915, 19508286, 16672620, 23057863, 25486128

18487332, 14563870, 18697947, 10400588, 11790741, 12207695, 9701813, 12029044, 22427629, 17725565, 17012385, 12950915, 19508286, 16672620, 23057863, 25486128, 28439033, 29133393, 30377275, 22665794, 31988078, 32949815

proteinLength

149

geneLength

450

Gene

Coordinates

2,449,841 → 2,450,290

The protein

Structure

[PDB|4ETS] (from Campylobacter jejuni, 33% identity) [pubmed|22665794]

Expression and Regulation

Operons

[[this]]

Expression and Regulation

Other regulations

[[this]]

labs

[SW|John Helmann], Cornell University, USA [http://www.micro.cornell.edu/research/labs/helmann-lab/index.cfm Homepage]