Tue Dec 13 2016 11:16:35 GMT+0100 (CET)2025-05-11 09:16:16
locus
BSU27650
BSU_27650
ec
outlinks
bsu
BSU27650
BSU_27650
aminos
MKKGRLIAFFLFVLLIGTGLGYFTKPAANNITLGLDLQGGFEVLYDVQPVKKGDKITKDVLVSTVEALNRRANVLGVSEPNIQIEGNNRIRVQLAGVTNQNRAREILATEAQLSFRDANDKELLNGADLVENGAKQTYDSTTNEPIVTIKLKDADKFGEVTKKVMKMAPNNQLVIWLDYDKGDSFKKEVQKEHPKFVSAPNVSQELNTTDVKIEGHFTAQEAKDLASILNAGALPVKLTEKYSTSVGAQFGQQALHDTVFAGIVGIAIIFLFMLFYYRLPGLIAVITLSVYIYITLQIFDWMNAVLTLPGIAALILGVGMAVDANIITYERIKEELKLGKSVRSAFRSGNRRSFATIFDANITTIIAAVVLFIFGTSSVKGFATMLILSILTSFITAVFLSRFLLALLVESRWLDRKKGWFGVNKKHIMDIQDTDENTEPHTPFQKWDFTSKRKYFFIFSSAVTVAGIIILLVFRLNLGIDFASGARIEVQSDHKLTTEQVEKDFESLGMDPDTVVLSGEKSNIGVARFVGVPDKETIAKVKTYFKDKYGSDPNVSTVSPTVGKELARNALYAVAIASIGIIIYVSIRFEYKMAIAAIASLLYDAFFIVTFFSITRLEVDVTFIAAILTIIGYSINDTIVTFDRVREHMKKRKPKTFADLNHIVNLSLQQTFTRSINTVLTVVIVVVTLLIFGASSITNFSIALLVGLLTGVYSSLYIAAQIWLAWKGRELKKDSAQ
[SW|Categories] containing this gene/protein
[SW|protein secretion], [SW|cell envelope stress proteins (controlled by SigM, V, W, X, Y)], [SW|membrane proteins]
Gene
Coordinates on the chromosome (coding sequence)
2,826,900 -> 2,829,113
Expression and Regulation
[SW|Sigma factor]
[[protein|SigM]] [Pubmed|18179421]
Biological materials
Mutant
SM-GN3 (''secDF-spc''), available in [SW|Anne Galinier]'s and [SW|Boris Görke]'s labs
MGNA-B519 (yrvB::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/1518 NBRP B. subtilis, Japan]
SM-GN3 (''secDF-spc''), available in [SW|Anne Galinier]'s and [SW|Boris Görke]'s labs
BKE27650 (Δ[[gene|secDF]]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE27650 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATTATGTATATCCTCCCTT, downstream forward: _UP4_TAAAAAATATCAGGCTGTCC
BKK27650 (Δ[[gene|secDF]]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK27650 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATTATGTATATCCTCCCTT, downstream forward: _UP4_TAAAAAATATCAGGCTGTCC
References
Original publications
proteinLength
737
geneLength
2214
Gene
Coordinates
2,826,900 → 2,829,113
Gene
Phenotypes of a mutant
reduced [SW|protein secretion] [pubmed|32111210]
The protein
Protein family
N-terminal part: SecD/SecF family (single member, according to UniProt)
C-terminal part: SecD/SecF family (single member, according to UniProt)
The protein
Paralogous protein(s)
[[this]]
The protein
Structure
[PDB|5XAN] (from Deinococcus radiodurans, 32% identity) [pubmed|28467902]
Expression and Regulation
Operons
[[this]]
Expression and Regulation
Other regulations
[[this]]