SubtiBank SubtiBank
Version comparison:

Tue Dec 13 2016 11:16:35 GMT+0100 (CET)2025-05-11 09:16:16

locus

BSU27650

BSU_27650

ec

outlinks

bsu

BSU27650

BSU_27650

aminos

MKKGRLIAFFLFVLLIGTGLGYFTKPAANNITLGLDLQGGFEVLYDVQPVKKGDKITKDVLVSTVEALNRRANVLGVSEPNIQIEGNNRIRVQLAGVTNQNRAREILATEAQLSFRDANDKELLNGADLVENGAKQTYDSTTNEPIVTIKLKDADKFGEVTKKVMKMAPNNQLVIWLDYDKGDSFKKEVQKEHPKFVSAPNVSQELNTTDVKIEGHFTAQEAKDLASILNAGALPVKLTEKYSTSVGAQFGQQALHDTVFAGIVGIAIIFLFMLFYYRLPGLIAVITLSVYIYITLQIFDWMNAVLTLPGIAALILGVGMAVDANIITYERIKEELKLGKSVRSAFRSGNRRSFATIFDANITTIIAAVVLFIFGTSSVKGFATMLILSILTSFITAVFLSRFLLALLVESRWLDRKKGWFGVNKKHIMDIQDTDENTEPHTPFQKWDFTSKRKYFFIFSSAVTVAGIIILLVFRLNLGIDFASGARIEVQSDHKLTTEQVEKDFESLGMDPDTVVLSGEKSNIGVARFVGVPDKETIAKVKTYFKDKYGSDPNVSTVSPTVGKELARNALYAVAIASIGIIIYVSIRFEYKMAIAAIASLLYDAFFIVTFFSITRLEVDVTFIAAILTIIGYSINDTIVTFDRVREHMKKRKPKTFADLNHIVNLSLQQTFTRSINTVLTVVIVVVTLLIFGASSITNFSIALLVGLLTGVYSSLYIAAQIWLAWKGRELKKDSAQ

[SW|Categories] containing this gene/protein

[SW|protein secretion], [SW|cell envelope stress proteins (controlled by SigM, V, W, X, Y)], [SW|membrane proteins]

Gene

Coordinates on the chromosome (coding sequence)

2,826,900 -> 2,829,113

Expression and Regulation

[SW|Sigma factor]

[[protein|SigM]] [Pubmed|18179421]

Biological materials

Mutant

SM-GN3 (''secDF-spc''), available in [SW|Anne Galinier]'s and [SW|Boris Görke]'s labs

MGNA-B519 (yrvB::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/1518 NBRP B. subtilis, Japan]

SM-GN3 (''secDF-spc''), available in [SW|Anne Galinier]'s and [SW|Boris Görke]'s labs

BKE27650 (Δ[[gene|secDF]]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE27650 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATTATGTATATCCTCCCTT, downstream forward: _UP4_TAAAAAATATCAGGCTGTCC

BKK27650 (Δ[[gene|secDF]]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK27650 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATTATGTATATCCTCCCTT, downstream forward: _UP4_TAAAAAATATCAGGCTGTCC

References

Original publications

18763711, 15995216, 18179421

18763711, 15995216, 18179421, 28467902, 32111210

proteinLength

737

geneLength

2214

Gene

Coordinates

2,826,900 → 2,829,113

Gene

Phenotypes of a mutant

reduced [SW|protein secretion] [pubmed|32111210]

The protein

Protein family

N-terminal part: SecD/SecF family (single member, according to UniProt)

C-terminal part: SecD/SecF family (single member, according to UniProt)

The protein

Paralogous protein(s)

[[this]]

The protein

Structure

[PDB|5XAN] (from Deinococcus radiodurans, 32% identity) [pubmed|28467902]

Expression and Regulation

Operons

[[this]]

Expression and Regulation

Other regulations

[[this]]