SubtiBank SubtiBank
Version comparison:

Mon Aug 31 2015 13:53:37 GMT+0200 (CEST)2025-05-28 17:48:19

locus

BSU11381

BSU_11381

ec

outlinks

bsu

BSU11381

BSU_11381

syns

[SW|Categories] containing this gene/protein

[SW|ABC transporters], [SW|membrane proteins], [SW|pseudogenes]

The protein

[SW|Interactions]

([[protein|AppD]]-[[protein|AppF]])-([[protein|AppB]]-[[protein|AppC]])-[[protein|AppA]] [Pubmed|10092453]

Expression and Regulation

Operon

''[[protein|appD]]-[[protein|appF]]-[[protein|appA]]-[[protein|appB]]-[[protein|appC]]'' [Pubmed|7997159]

Expression and Regulation

Regulation

repressed during exponential growth ([[protein|ScoC]]) [Pubmed|10383984]

repressed during growth in the presence of branched chain amino acids ([[protein|CodY]]) [Pubmed|12618455]

Expression and Regulation

Regulatory mechanism

[[protein|ScoC]]: transcription repression [Pubmed|10383984]

[[protein|CodY]]: transcription repression [Pubmed|12618455]

[[protein|TnrA]]: transcription activation [Pubmed|25755103]

Biological materials

Mutant

GP2100 (D(''[[protein|appD]]-[[protein|appF]]-[[protein|appA]]-[[protein|appB]]-[[protein|appC]]'')::''spc''), available in [SW|Jörg Stülke]'s lab

GP2100 (D(''[[gene|appD]]-[[gene|appF]]-[[gene|appA/2]]-[[gene|appB]]-[[gene|appC]]'')::''spc''), available in [SW|Jörg Stülke]'s lab

BKE11381 (Δ[[gene|appA/1]]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE11381 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATTAGATATTCCCCCTCTT, downstream forward: _UP4_ATGCTGAAATCCGTAGAAAA

BKK11381 (Δ[[gene|appA/1]]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK11381 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATTAGATATTCCCCCTCTT, downstream forward: _UP4_ATGCTGAAATCCGTAGAAAA

References

12618455, 7997159, 10092453, 10383984, 12618455, 25755103

12618455, 7997159, 10092453, 10383984, 12618455, 25755103, 15588833

proteinLength

154

geneLength

465

Gene

Coordinates

1,213,537 → 1,214,001

The protein

Protein family

[SW|bacterial solute-binding protein 5 family] (according to UniProt)

The protein

Paralogous protein(s)

[[this]]

The protein

Structure

[PDB|1XOC] (the intact protein) [pubmed|15588833]

Expression and Regulation

Operons

[[this]]

Expression and Regulation

Other regulations

[[this]]