SubtiBank SubtiBank
Version comparison:

2017-07-24 09:35:17Tue Dec 13 2016 11:16:35 GMT+0100 (CET)

proteinLength

128

geneLength

384

Gene

Coordinates

2,966,413 → 2,966,793

The protein

Catalyzed reaction/ biological activity

S-adenosyl-L-methionine = (5-deoxy-5-adenosyl)(3-aminopropyl)-methylsulfonium salt + CO2 (according to Swiss-Prot)

S-adenosyl-L-methionine = (5-deoxy-5-adenosyl)(3-aminopropyl)-methylsulfonium salt CO2 (according to Swiss-Prot)

Expression and Regulation

Operons

[[this]]

Expression and Regulation

Other regulations

[[this]]

References

10844697, 15720552, 9723923, 21815947, 24529384

10844697, 15720552, 9723923, 21815947

[SW|Categories] containing this gene/protein

[SW|miscellaneous metabolic pathways], [SW|biofilm formation]

Gene

Coordinates on the chromosome (coding sequence)

2,966,413 -> 2,966,793

Expression and Regulation

Operon

''[[protein|gapB]]-[[protein|speD]]'' [Pubmed|15720552]

''[[protein|speD]]'' [Pubmed|10844697]

Expression and Regulation

[SW|Sigma factor]

''[[protein|gapB]]'': [[protein|SigA]] [Pubmed|15720552]

''[[protein|speD]]'': [[protein|SigA]] [Pubmed|10844697]

Expression and Regulation

Regulation

''[[protein|gapB]]'': repressed in the presence of glucose ([[protein|CcpN]]) [Pubmed|15720552]

Expression and Regulation

Regulatory mechanism

[[protein|CcpN]]: transcription repression [Pubmed|15720552]

Expression and Regulation

Additional information

'[[protein|speD]]': the mRNA is substantially stabilized upon depletion of [[Rny|RNase Y]] (the half-life of the monocistronic 'speD' mRNA increases from 1.4 to 36 min) [PubMed|21815947]