Tue Dec 13 2016 11:16:37 GMT+0100 (CET)2025-05-09 06:39:49
description
transcriptional regulator (LysR family), activator of the ywbH-ywbG operon
transcriptional regulator ([SW|LysR family]), activator of the [[gene|ywbH]]-[[gene|ywbG]] operon
locus
BSU38310
BSU_38310
function
control of expression of the ywbH-ywbG operon
control of expression of the [[gene|ywbH]]-[[gene|ywbG]] operon
product
transcriptional regulator (LysR family)
transcriptional regulator ([SW|LysR family])
ec
outlinks
bsu
BSU38310
BSU_38310
aminos
MDIRHLTYFLEVARLKSFTKASQSLYVSQPTISKMIKNLEEELGIELFYRNGRQVELTDAGHSMYVQAQEIIKSFQNLTSELNDIMEVKKGHVRIGLPPMIGSGFFPRVLGDFRENYPNVTFQLVEDGSIKVQEGVGDGSLDIGVVVLPANEDIFHSFTIVKETLMLVVHPSHRLADEKECQLRELKDEPFIFFREDFVLHNRIMTECIKAGFRPHIIYETSQWDFISEMVSANLGIGLLPERICRGLDPEKVKVIPLVDPVIPWHLAIIWRKDRYLSFAARAWLEHTKSYLWDPKKDSKG
[SW|Categories] containing this gene/protein
[SW|transcription factors and their control]
Gene
Coordinates on the chromosome (coding sequence)
3,932,198 -> 3,933,103
The protein
Protein family
[SW|LysR family]
[SW|LysR family] (according to UniProt)
Expression and Regulation
Operon
''[[protein|ywbI]]-[[protein|thiM]]-[[protein|thiE]]'' [Pubmed|9139923]
Expression and Regulation
[SW|Sigma factor]
[[protein|SigA]] [Pubmed|9139923]
proteinLength
301
geneLength
906
Gene
Coordinates
3,932,198 → 3,933,103
The protein
Paralogous protein(s)
[[this]]
The protein
[SW|Domains]
[SW|HTH lysR-type domain] (aa 1-58) (according to UniProt)
The protein
Structure
[PDB|3FZV] (from Pseudomonas aeruginosa, 28% identity)
Expression and Regulation
Operons
[[this]]
Expression and Regulation
Other regulations
[[this]]
Biological materials
Mutant
MGNA-B675 (ywbI::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/1674 NBRP B. subtilis, Japan]
BKE38310 (Δ[[gene|ywbI]]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE38310 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATGCGCTTCACCCTTTCTA, downstream forward: _UP4_AAAGATAGTAAAGGATGATG
BKK38310 (Δ[[gene|ywbI]]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK38310 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATGCGCTTCACCCTTTCTA, downstream forward: _UP4_AAAGATAGTAAAGGATGATG