Tue Dec 13 2016 11:16:37 GMT+0100 (CET)2025-04-30 23:39:59
description
transcription repressor (TetR family), controls slrA expression
transcription repressor ([SW|TetR family]), controls [[gene|slrA]] expression
locus
BSU38220
BSU_38220
function
control of SlrA expression
control of [[gene|slrA]] expression
product
transcription repressor (TetR family)
transcription repressor ([SW|TetR family])
ec
outlinks
bsu
BSU38220
BSU_38220
aminos
MKKNKFQIKREATFESFIDAGVNLLIDRAYDPVSVEDISRAAGYSKGAFYVHFVSKDDFLLYLLEKRQMKKKIIIGYLDQMERESVKSLTLDEAAKHAAELLYSYYINKPSWDITSFAMNMPTYKVLKKCKAYVRLYELWVEENVLYIKWLKERKLIDACIDPEYTAKIICAVLDGIIKQSYVLGQPATFRSFLDALSVFFTLDREHERPRILKSFSESEEHQ
[SW|Categories] containing this gene/protein
[SW|transcription factors and their control], [SW|biofilm formation]
Gene
Coordinates on the chromosome (coding sequence)
3,922,292 -> 3,922,963
Expression and Regulation
Operon
''[[protein|ywcC]]-[[protein|gtcA]]-[[protein|galK]]-[[protein|galT]]'' [Pubmed|22383849,22893383]
proteinLength
223
geneLength
672
Gene
Coordinates
3,922,292 → 3,922,963
The protein
Paralogous protein(s)
[[this]]
The protein
[SW|Domains]
[SW|HTH tetR-type domain] (aa 11-71) (according to UniProt)
Expression and Regulation
Operons
[[this]]
Expression and Regulation
Other regulations
[[this]]
Biological materials
Mutant
MGNA-B230 (ywcC::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/1229 NBRP B. subtilis, Japan]
BKE38220 (Δ[[gene|ywcC]]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE38220 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATATTTTTCTCCTGGCGGT, downstream forward: _UP4_CAGTGAAGTATAGAGAAATA
BKK38220 (Δ[[gene|ywcC]]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK38220 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATATTTTTCTCCTGGCGGT, downstream forward: _UP4_CAGTGAAGTATAGAGAAATA