SubtiBank SubtiBank
Version comparison:

Tue Dec 13 2016 11:16:30 GMT+0100 (CET)2025-05-26 04:54:36

locus

BSU02310

BSU_02310

ec

outlinks

bsu

BSU02310

BSU_02310

aminos

MKRMIVRMTLPLLIVCLAFSSFSASARAASEEKYWDHWIERHAQPLDASNASNKDLRFLKKVLKGKRIVQLGETTHGAGEINATKVRMIKYLHEELGYDVLAFESGFPDTNASYLNMDQLTPKSTMKNSIYAVWHTEDVVELFDYMKEQKEKGDPLILTGFDIQSMKNSFNVAATQWVKAVDPEKAELLSQSENDFSTLVTDSNTFDEFSQKKEKLVKNYQKLIKFTKTHASELKENLPKEPKAYEMFMHSLQLRIDVMETYMLEEMKEKLEEYPENIEDFSFFMRDRMMAEQFQWVADTLYPKKKIIVWGHNYHLRKQNTKMIKDWVQLNGPNMGDYLPERLKKQTYTIGIYAYSGASLDSSDNKTVKPVTSPPPSGSLEALLKAADRPAVFVDFLHTKNKKGTSWMYTPRTALYWGYMEEQMILKEQYDGVIWLEHITPSVIIK

[SW|Categories] containing this gene/protein

[SW|cell envelope stress proteins (controlled by SigM, V, W, X, Y)], [SW|resistance against toxins/ antibiotics]

Gene

Coordinates on the chromosome (coding sequence)

249,979 -> 251,319

Expression and Regulation

Operon

''ybfO'' (according to [http://dbtbs.hgc.jp/COG/prom/ybfO.html DBTBS])

''[[protein|ybfO]]-[[protein|ybfP]]'' [Pubmed|20817675]

''[[protein|ybfO]]-[[protein|ybfP]]-[[protein|ybfQ]]'' [Pubmed|12207695]

Expression and Regulation

[SW|Sigma factor]

[[protein|SigW]] [Pubmed|11866510]

Expression and Regulation

Regulation

strongly induced by alkali shock ([[protein|SigW]] [Pubmed|11866510])

repressed during logarithmic growth ([[protein|AbrB]]) [Pubmed|18840696]

Expression and Regulation

Regulatory mechanism

[[protein|AbrB]]: transcription repression [Pubmed|18840696,20817675]

proteinLength

446

geneLength

1341

Gene

Coordinates

249,979 → 251,319

The protein

Paralogous protein(s)

[[this]]

The protein

Structure

[PDB|2QGM] (23% identity)

Expression and Regulation

Operons

[[this]]

Expression and Regulation

Other regulations

[[this]]

Biological materials

Mutant

MGNA-B935 (ybfO::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/1934 NBRP B. subtilis, Japan]

BKE02310 (Δ[[gene|ybfO]]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE02310 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CAATTCTATCTCTCCTTTTC, downstream forward: _UP4_TGAGCGGTGTCCCCTGTGGT

BKK02310 (Δ[[gene|ybfO]]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK02310 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CAATTCTATCTCTCCTTTTC, downstream forward: _UP4_TGAGCGGTGTCCCCTGTGGT