Tue Dec 13 2016 11:16:30 GMT+0100 (CET)2025-05-26 04:54:36
locus
BSU02310
BSU_02310
ec
outlinks
bsu
BSU02310
BSU_02310
aminos
MKRMIVRMTLPLLIVCLAFSSFSASARAASEEKYWDHWIERHAQPLDASNASNKDLRFLKKVLKGKRIVQLGETTHGAGEINATKVRMIKYLHEELGYDVLAFESGFPDTNASYLNMDQLTPKSTMKNSIYAVWHTEDVVELFDYMKEQKEKGDPLILTGFDIQSMKNSFNVAATQWVKAVDPEKAELLSQSENDFSTLVTDSNTFDEFSQKKEKLVKNYQKLIKFTKTHASELKENLPKEPKAYEMFMHSLQLRIDVMETYMLEEMKEKLEEYPENIEDFSFFMRDRMMAEQFQWVADTLYPKKKIIVWGHNYHLRKQNTKMIKDWVQLNGPNMGDYLPERLKKQTYTIGIYAYSGASLDSSDNKTVKPVTSPPPSGSLEALLKAADRPAVFVDFLHTKNKKGTSWMYTPRTALYWGYMEEQMILKEQYDGVIWLEHITPSVIIK
[SW|Categories] containing this gene/protein
[SW|cell envelope stress proteins (controlled by SigM, V, W, X, Y)], [SW|resistance against toxins/ antibiotics]
Gene
Coordinates on the chromosome (coding sequence)
249,979 -> 251,319
Expression and Regulation
Operon
''ybfO'' (according to [http://dbtbs.hgc.jp/COG/prom/ybfO.html DBTBS])
''[[protein|ybfO]]-[[protein|ybfP]]'' [Pubmed|20817675]
''[[protein|ybfO]]-[[protein|ybfP]]-[[protein|ybfQ]]'' [Pubmed|12207695]
Expression and Regulation
[SW|Sigma factor]
[[protein|SigW]] [Pubmed|11866510]
Expression and Regulation
Regulation
strongly induced by alkali shock ([[protein|SigW]] [Pubmed|11866510])
repressed during logarithmic growth ([[protein|AbrB]]) [Pubmed|18840696]
Expression and Regulation
Regulatory mechanism
[[protein|AbrB]]: transcription repression [Pubmed|18840696,20817675]
proteinLength
446
geneLength
1341
Gene
Coordinates
249,979 → 251,319
The protein
Paralogous protein(s)
[[this]]
The protein
Structure
[PDB|2QGM] (23% identity)
Expression and Regulation
Operons
[[this]]
Expression and Regulation
Other regulations
[[this]]
Biological materials
Mutant
MGNA-B935 (ybfO::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/1934 NBRP B. subtilis, Japan]
BKE02310 (Δ[[gene|ybfO]]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE02310 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CAATTCTATCTCTCCTTTTC, downstream forward: _UP4_TGAGCGGTGTCCCCTGTGGT
BKK02310 (Δ[[gene|ybfO]]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK02310 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CAATTCTATCTCTCCTTTTC, downstream forward: _UP4_TGAGCGGTGTCCCCTGTGGT