Tue Dec 13 2016 11:16:32 GMT+0100 (CET)2025-05-25 07:43:08
locus
BSU12350
BSU_12350
ec
names
yjmF
yjmF
uxuB
outlinks
bsu
BSU12350
BSU_12350
aminos
MIPLHENLAGKTAVITGGSGVLCSAMARELARHGMKVAILNRTAEKGQAVVKEITAAGGTACAVAADVLDRMSLERAKEDILGQFGAVDLLINGAGGNHPDAITDVETYEEAGEGQSFFDMDERGFLTVFSTNFTGAFLASQVFGKELLKADSPAIINLSSMSAYSPMTKVPAYSAAKASINNFTMWMAVHFAETGLRVNAIAPGFFLTKQNHDLLINQDGTFTSRSHKIIAGTPMKRFGKPEDLLGTLLWLADESYSGFVTGITVPVDGGFMAYSGV
[SW|Categories] containing this gene/protein
[SW|utilization of specific carbon sources], [SW|sporulation proteins]
Gene
Coordinates on the chromosome (coding sequence)
1,306,562 -> 1,307,398
The protein
Protein family
short-chain dehydrogenases/reductases (SDR) family (according to Swiss-Prot)
[SW|Short-chain dehydrogenases/reductases (SDR) family] (according to UniProt)
Expression and Regulation
Operon
''[[protein|uxaC]]-[[protein|yjmB]]-[[protein|yjmC]]-[[protein|yjmD]]-[[protein|uxuA]]-[[protein|yjmF]]-[[protein|exuT]]-[[protein|exuR]]-[[protein|uxaB]]-[[protein|uxaA]]'' [Pubmed|9882655]
''[[protein|yjmC]]-[[protein|yjmD]]-[[protein|uxuA]]-[[protein|yjmF]]-[[protein|exuT]]-[[protein|exuR]]-[[protein|uxaB]]-[[protein|uxaA]]'' [Pubmed|9882655]
Expression and Regulation
[SW|Sigma factor]
[[protein|SigE]] [Pubmed|15699190]
''[[protein|uxaC]]'': [[protein|SigA]] [Pubmed|9882655]
''[[protein|yjmC]]'': [[protein|SigE]] [Pubmed|9882655]
Expression and Regulation
Regulation
repressed by glucose ([[protein|CcpA]]) [http://www.ncbi.nlm.nih.gov/sites/entrez/9882655 PubMed1] [http://www.ncbi.nlm.nih.gov/sites/entrez/10666464 PubMed2]
induced by galacturonate ([[protein|ExuR]]) [Pubmed|9882655]
Expression and Regulation
Regulatory mechanism
[[protein|CcpA]]: transcription repression [http://www.ncbi.nlm.nih.gov/sites/entrez/9882655 PubMed1] [http://www.ncbi.nlm.nih.gov/sites/entrez/10666464 PubMed2]
[[protein|ExuR]]: reanscription repression in the absence of inducer [Pubmed|9882655]
proteinLength
278
geneLength
837
Gene
Coordinates
1,306,562 → 1,307,398
The protein
Paralogous protein(s)
[[this]]
Expression and Regulation
Operons
[[this]]
Expression and Regulation
Other regulations
[[this]]
Biological materials
Mutant
MGNA-A370 (yjmF::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/370 NBRP B. subtilis, Japan]
BKE12350 (Δ[[gene|yjmF]]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE12350 BGSC], [Pubmed|28189581], upstream reverse: _UP1_AGCCAGGTTCTCATGCAGCG, downstream forward: _UP4_TAACGAAAGCGGTGCAACAG
BKK12350 (Δ[[gene|yjmF]]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK12350 BGSC], [Pubmed|28189581], upstream reverse: _UP1_AGCCAGGTTCTCATGCAGCG, downstream forward: _UP4_TAACGAAAGCGGTGCAACAG