SubtiBank SubtiBank
Version comparison:

2017-8-11 16:0:32025-05-29 11:46:14

title

ydcH

pamR

_ec

description

unknown

[SW|MarR family|MarR/DUF24 family] transcription factor

locus

BSU04770

BSU_04770

geneLength

441

444

function

unknown

control of the [[gene|ydcF]]-[[gene|ydcG]]-[[gene|pamR ]]operon

product

unknown

[SW|MarR family|MarR/DUF24 family] transcription factor

names

ydcH

pamR

ydcH

outlinks

bsu

BSU04770

BSU_04770

Biological materials

Mutant

MGNA-C096 (ydcH::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/2094 NBRP B. subtilis, Japan]

MGNA-C096 (ydcH::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/2094 NBRP B. subtilis, Japan]

BKE04770 (Δ[[gene|pamR]]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE04770 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CGGGCTTGTGTTCGGACCGC, downstream forward: _UP4_TAAAGATACGGGCAGCGCCA

BKK04770 (Δ[[gene|pamR]]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK04770 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CGGGCTTGTGTTCGGACCGC, downstream forward: _UP4_TAAAGATACGGGCAGCGCCA

The protein

Protein family

[SW|MarR family|MarR/DUF24 family]

The protein

Paralogous protein(s)

[[this]]

The protein

[SW|Domains]

[SW|HTH marR-type domain] (aa 11-147) (according to UniProt)

The protein

Structure

[PDB|3BPX] ([[protein|MarR ]]from Methanothermobacter thermautotrophicus, 28% identity, aa 29 - 137) [pubmed|18272181]

References

Research papers

29240826, 18272181