Tue Dec 13 2016 11:16:37 GMT+0100 (CET)2025-05-10 11:27:23
locus
BSU38970
BSU_38970
ec
outlinks
bsu
BSU38970
BSU_38970
aminos
MRKQVALVTGAAGGIGFEIAREFAREGASVIVSDLRPEACEKAASKLAEEGFDAAAIPYDVTKEAQVADTVNVIQKQYGRLDILVNNAGIQHVAPIEEFPTDTFEQLIKVMLTAPFIAMKHVFPIMKKQQFGRIINIASVNGLVGFAGKSAYNSAKHGVIGLTKVGALEGAPHGITVNALCPGYVDTQLVRNQLSDLSKTRNVPYDSVLEQVIFPLVPQKRLLSVKEIADYAVFLASEKAKGVTGQAVVLDGGYTAQ
[SW|Categories] containing this gene/protein
[SW|utilization of specific carbon sources], [SW|sporulation proteins]
Gene
Coordinates on the chromosome (coding sequence)
4,000,539 -> 4,001,312
The protein
Protein family
short-chain dehydrogenases/reductases (SDR) family (according to Swiss-Prot)
[SW|Short-chain dehydrogenases/reductases (SDR) family] (according to UniProt)
Expression and Regulation
Operon
''[[protein|hbuT]]-[[protein|scoA]]-[[protein|scoB]]-[[protein|yxjF]]'' [Pubmed|10746760]
Expression and Regulation
[SW|Sigma factor]
[[protein|SigE]] [Pubmed|12662922]
Expression and Regulation
Regulation
repressed by glucose (4-fold) ([[protein|CcpA]]) [Pubmed|12850135,10666464]
expressed early during sporulation in the mother cell ([[protein|SigE]]) [Pubmed|12662922]
Expression and Regulation
Regulatory mechanism
[[protein|CcpA]]: transcription repression [Pubmed|12850135,10666464]
Biological materials
Mutant
GP1112 (spc), available in [SW|Stülke] lab
MGNA-B730 (yxjF::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/1729 NBRP B. subtilis, Japan]
GP1112 (spc), available in [SW|Stülke] lab
BKE38970 (Δ[[gene|yxjF]]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE38970 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATGTCAAACACCTTCCCAT, downstream forward: _UP4_TGACATAAAAAACACACTTG
BKK38970 (Δ[[gene|yxjF]]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK38970 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATGTCAAACACCTTCCCAT, downstream forward: _UP4_TGACATAAAAAACACACTTG
proteinLength
257
geneLength
774
Gene
Coordinates
4,000,539 → 4,001,312
The protein
Paralogous protein(s)
[[this]]
The protein
Structure
[PDB|2YZ7] (from Alcaligenes Faecalis 42% identity)
Expression and Regulation
Operons
[[this]]
Expression and Regulation
Other regulations
[[this]]