SubtiBank SubtiBank
Version comparison:

Tue Dec 13 2016 11:16:37 GMT+0100 (CET)2025-05-11 01:48:05

locus

BSU38270

BSU_38270

ec

outlinks

bsu

BSU38270

BSU_38270

aminos

MNFTKIAVSAGCILALCAGCGANDTSSTKEKASSEKSGVTKEITASVNKMETIISKLNDSVEKGDQKEIEKKGKELNSYWLSFENDIRSDYPFEYTEIEKHLQPIYTEAQKDKPDAGKIKTESESLKASLEDLTEAKKSGKKASDQLAKAADEYKGYVKEQSDQLVKATEAFTGAVKSGDIEKSKTLYAKARVYYERIEPIAESLGDLDPKIDARENDVEEGDKWTGFHKLEKAIWKDQDISGEKATADQLLKDVKELDGSIQSLKLTPEQIVAGAMELLNEAGISKITGEEERYSRIDLVDLMANVEGSEAVYQTVKSALVKDHSDLTEKLDTEFSEFEVLMAKYKTNDQSYTSYDKLSEKQIRELSTKLTTLSETMSKIANVL

[SW|Categories] containing this gene/protein

[SW|transporters/ other], [SW|acquisition of iron], [SW|iron metabolism], [SW|membrane proteins]

Gene

Coordinates on the chromosome (coding sequence)

3,927,951 -> 3,929,108

The protein

Protein family

UPF0409 family (according to Swiss-Prot)

EfeM/EfeO family (single member, according to UniProt)

The protein

[SW|Interactions]

[[protein|EfeO]]-[[protein|EfeU]]-[[protein|EfeB]] [Pubmed|23180473,23764491]

Expression and Regulation

Operon

''[[protein|efeU]]-[[protein|efeO]]-[[protein|efeB]]'' [Pubmed|9353933]

Expression and Regulation

[SW|Sigma factor]

[[protein|SigA]] [Pubmed|23764491]

Expression and Regulation

Regulation

induced upon iron starvation ([[protein|Fur]]) [Pubmed|12354229]

Expression and Regulation

Regulatory mechanism

[[protein|Fur]]: transcription repression [Pubmed|12354229]

References

16672620, 9353933, 12354229, 18763711, 23180473, 23764491, 21238429, 27795321

16672620, 9353933, 12354229, 18763711, 23180473, 23764491, 21238429, 27795321, 29133393

proteinLength

385

geneLength

1158

Gene

Coordinates

3,927,951 → 3,929,108

The protein

Paralogous protein(s)

[[this]]

Expression and Regulation

Operons

[[this]]

Expression and Regulation

Other regulations

[[this]]

Biological materials

Mutant

MGNA-B227 (ywbM::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/1226 NBRP B. subtilis, Japan]

BKE38270 (Δ[[gene|efeO]]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE38270 BGSC], [Pubmed|28189581], upstream reverse: _UP1_TGATACAGCGATTTTTGTGA, downstream forward: _UP4_CTATAAAAGGAGTTTTGTAA

BKK38270 (Δ[[gene|efeO]]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK38270 BGSC], [Pubmed|28189581], upstream reverse: _UP1_TGATACAGCGATTTTTGTGA, downstream forward: _UP4_CTATAAAAGGAGTTTTGTAA