SubtiBank SubtiBank
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Sun Aug 28 2016 12:56:13 GMT+0200 (CEST)2025-05-14 14:50:57

description

co-sigma factor (with SigO)

co-sigma factor (with [[protein|SigO]])

locus

BSU33222

BSU_33222

function

RNA polymerase sigma factor

[SW|RNA polymerase] [SW|sigma factor]

product

co-sigma factor (with SigO)

co-sigma factor (with [[protein|SigO]])

ec

outlinks

bsu

BSU33222

BSU_33222

[SW|Categories] containing this gene/protein

[SW|transcription], [SW|sigma factors and their control], [SW|acid stress proteins (controlled by SigO-RsoA)]

Gene

Coordinates on the chromosome (coding sequence)

3,409,219 -> 3,409,458

The protein

[SW|Interactions]

[SW|RsoA]-[[protein|RpoC]] [Pubmed|19940246]

[[protein|SigO]]-[SW|RsoA] [Pubmed|19940246]

Expression and Regulation

Operon

''[[protein|sigO]]-[SW|rsoA]'' [Pubmed|19047353]

Expression and Regulation

[SW|Sigma factor]

[[protein|SigO]]-[SW|RsoA] [Pubmed|19047353]

Expression and Regulation

Regulation

induced by acidic growth conditions [Pubmed|19047353]

Expression and Regulation

Regulatory mechanism

activated by [SW|YvrHb] [Pubmed|16306698]

Labs working on this gene/protein

[SW|John Helmann], Cornell University, USA [http://www.micro.cornell.edu/research/labs/helmann-lab/index.cfm Homepage]

References

18573182, 19940246, 26651345, 19047353, 26367498, 26400263

18573182, 19940246, 26651345, 19047353, 26367498, 26400263, 27558998

proteinLength

79

geneLength

240

Gene

Coordinates

3,409,219 3,409,458

The protein

Paralogous protein(s)

[[this]]

Expression and Regulation

Operons

[[this]]

Expression and Regulation

Other regulations

[[this]]

Biological materials

Mutant

BKE33222 ([[gene|rsoA]]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE33222 BGSC], [Pubmed|28189581], upstream reverse: _UP1_TTGTTCAAACTGGCCGTCCA, downstream forward: _UP4_TAATATTTTCATATGAAAAA

BKK33222 ([[gene|rsoA]]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK33222 BGSC], [Pubmed|28189581], upstream reverse: _UP1_TTGTTCAAACTGGCCGTCCA, downstream forward: _UP4_TAATATTTTCATATGAAAAA

labs

[SW|John Helmann], Cornell University, USA [http://www.micro.cornell.edu/research/labs/helmann-lab/index.cfm Homepage]