SubtiBank SubtiBank
Version comparison:

Tue Dec 13 2016 11:16:30 GMT+0100 (CET)2024-12-28 02:32:46

description

similar to polyribonucleotide nucleotidyltransferase

similar to the C-terminal domain of E. coli polyribonucleotide phosphorylase and to four repeated domains at the N-terminus of E. coli ribosomal protein S1

locus

BSU00630

BSU_00630

ec

outlinks

bsu

BSU00630

BSU_00630

aminos

MSIEVGSKLQGKITGITNFGAFVELPGGSTGLVHISEVADNYVKDINDHLKVGDQVEVKVINVEKDGKIGLSIKKAKDRPQARPRNDFRPKESFEQKMNKFLKDSEDRLSSLKRNTESKRGGRGARRG

[SW|Categories] containing this gene/protein

[SW|sporulation proteins], [SW|poorly characterized/ putative enzymes]

Gene

Coordinates on the chromosome (coding sequence)

69,626 -> 70,012

The protein

Protein family

S1 motif domain (according to Swiss-Prot)

Peptidase U57 family (together with [[protein|YabG]]) (according to UniProt)

Expression and Regulation

Operon

''[[protein|yabM]]-[[protein|yabN]]-[[protein|yabO]]-[[protein|yabP]]-[[protein|yabQ]]-[SW|divIC]-[[protein|yabR]]'' [Pubmed|11283287]

''[[protein|yabP]]-[[protein|yabQ]]-[SW|divIC]-[[protein|yabR]]'' [Pubmed|11283287]

''[SW|divIC]-[[protein|yabR]]'' [Pubmed|11283287]

Expression and Regulation

[SW|Sigma factor]

''[[protein|yabM]]'': unknown

''[[protein|yabP]]'': [[protein|SigE]] [Pubmed|11283287]

''[SW|divIC]'': [[protein|SigM]] [Pubmed|18179421], [[protein|SigX]] [Pubmed|12207695], [[protein|SigW]] [Pubmed|12207695]

Expression and Regulation

Regulation

expressed during sporulation ([[protein|SigE]]) [Pubmed|11283287] and under stress conditions

References

11283287, 12207695

11283287, 12207695, 19152054

proteinLength

128

geneLength

387

Gene

Coordinates

69,626 70,012

The protein

Paralogous protein(s)

[[this]]

The protein

[SW|Domains]

[SW|S1 domain] (aa 4 ... 74) (according to the Interpro database)

The protein

Structure

[PDB|2K4K] ([[protein|YugI]], 51% identity from aa 3 ... 91) [pubmed|19152054]

Expression and Regulation

Operons

[[this]]

Expression and Regulation

Other regulations

[[this]]

Biological materials

Mutant

MGNA-B919 (yabR::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/1918 NBRP B. subtilis, Japan]

BKE00630 ([[gene|yabR]]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE00630 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATAAAAAAAGTGCTCCTCC, downstream forward: _UP4_TAACTTGCTGCTTTCTATAA

BKK00630 ([[gene|yabR]]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK00630 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATAAAAAAAGTGCTCCTCC, downstream forward: _UP4_TAACTTGCTGCTTTCTATAA