Tue Dec 13 2016 11:16:30 GMT+0100 (CET)2024-12-28 02:32:46
description
similar to polyribonucleotide nucleotidyltransferase
similar to the C-terminal domain of E. coli polyribonucleotide phosphorylase and to four repeated domains at the N-terminus of E. coli ribosomal protein S1
locus
BSU00630
BSU_00630
ec
outlinks
bsu
BSU00630
BSU_00630
aminos
MSIEVGSKLQGKITGITNFGAFVELPGGSTGLVHISEVADNYVKDINDHLKVGDQVEVKVINVEKDGKIGLSIKKAKDRPQARPRNDFRPKESFEQKMNKFLKDSEDRLSSLKRNTESKRGGRGARRG
[SW|Categories] containing this gene/protein
[SW|sporulation proteins], [SW|poorly characterized/ putative enzymes]
Gene
Coordinates on the chromosome (coding sequence)
69,626 -> 70,012
The protein
Protein family
S1 motif domain (according to Swiss-Prot)
Peptidase U57 family (together with [[protein|YabG]]) (according to UniProt)
Expression and Regulation
Operon
''[[protein|yabM]]-[[protein|yabN]]-[[protein|yabO]]-[[protein|yabP]]-[[protein|yabQ]]-[SW|divIC]-[[protein|yabR]]'' [Pubmed|11283287]
''[[protein|yabP]]-[[protein|yabQ]]-[SW|divIC]-[[protein|yabR]]'' [Pubmed|11283287]
''[SW|divIC]-[[protein|yabR]]'' [Pubmed|11283287]
Expression and Regulation
[SW|Sigma factor]
''[[protein|yabM]]'': unknown
''[[protein|yabP]]'': [[protein|SigE]] [Pubmed|11283287]
''[SW|divIC]'': [[protein|SigM]] [Pubmed|18179421], [[protein|SigX]] [Pubmed|12207695], [[protein|SigW]] [Pubmed|12207695]
Expression and Regulation
Regulation
expressed during sporulation ([[protein|SigE]]) [Pubmed|11283287] and under stress conditions
References
proteinLength
128
geneLength
387
Gene
Coordinates
69,626 70,012
The protein
Paralogous protein(s)
[[this]]
The protein
[SW|Domains]
[SW|S1 domain] (aa 4 ... 74) (according to the Interpro database)
The protein
Structure
[PDB|2K4K] ([[protein|YugI]], 51% identity from aa 3 ... 91) [pubmed|19152054]
Expression and Regulation
Operons
[[this]]
Expression and Regulation
Other regulations
[[this]]
Biological materials
Mutant
MGNA-B919 (yabR::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/1918 NBRP B. subtilis, Japan]
BKE00630 ([[gene|yabR]]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE00630 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATAAAAAAAGTGCTCCTCC, downstream forward: _UP4_TAACTTGCTGCTTTCTATAA
BKK00630 ([[gene|yabR]]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK00630 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATAAAAAAAGTGCTCCTCC, downstream forward: _UP4_TAACTTGCTGCTTTCTATAA