SubtiBank SubtiBank
Version comparison:

Tue Dec 13 2016 11:16:35 GMT+0100 (CET)2025-05-14 08:13:07

description

alkyl-sulphur catabolism regulator, transcriptional activator of the snaA-tcyJ-tcyK-tcyL-tcyM-tcyN-cmoO-cmoI-cmoJ-ribR-sndA-ytnM operon

alkyl-sulphur catabolism regulator, transcriptional activator of the [[gene|snaA]]-[[gene|tcyJ]]-[[gene|tcyK]]-[[gene|tcyL]]-[[gene|tcyM]]-[[gene|tcyN]]-[[gene|cmoO]]-[[gene|cmoI]]-[[gene|cmoJ]]-[[gene|ribR]]-[[gene|sndA]]-[[gene|ytnM ]]operon

locus

BSU29400

BSU_29400

product

alkyl-sulphur catabolism regulator, transcriptional activator (LysR family)

alkyl-sulphur catabolism regulator, transcriptional activator ([SW|LysR family])

ec

outlinks

bsu

BSU29400

BSU_29400

aminos

MELRSIKTFHTIVKFGSFYKAAEILNYSQPTISMRMKQLEQDLGVLLFERGKSLQLTKAGKLFYERTGDLLMQYEALKHNLSDLKEEEAGIINIGVSEPTASLIFPEILKDFLMDYPKITVNIKVDDANTCSQKLLDGTIDFAVCGEPELILENYYHPFFYDTLNVIVSDQHPLAEKKAVHLSDLAEERFIFTPANCPIRLQIEQHLHRELGNRYKKMELTSSMSHEYYVRENIGISIFTSTAHSKPFNGTKVIPILNLDITPPIGLLTNQKEVHFDRATKDLIARITKRFQQRSKELEGTSDKTITG

[SW|Categories] containing this gene/protein

[SW|biosynthesis/ acquisition of amino acids], [SW|sulfur metabolism], [SW|transcription factors and their control]

Gene

Coordinates on the chromosome (coding sequence)

3,008,938 -> 3,009,864

The protein

Protein family

[SW|LysR family]

[SW|LysR family] (according to UniProt)

Expression and Regulation

Operon

''ascR'' [Pubmed|9387221]

Expression and Regulation

[SW|Sigma factor]

[[protein|SigA]] [Pubmed|16109943]

Expression and Regulation

Regulation

repressed in the presence of cysteine ([[protein|CymR]]) [Pubmed|16109943]

Expression and Regulation

Regulatory mechanism

[[protein|CymR]]: transcription repression [Pubmed|16109943]

proteinLength

308

geneLength

927

Gene

Coordinates

3,008,938 3,009,864

The protein

Paralogous protein(s)

[[this]]

The protein

[SW|Domains]

[SW|HTH lysR-type domain] (aa 1-57) (according to UniProt)

Expression and Regulation

Operons

[[this]]

Expression and Regulation

Other regulations

[[this]]

Biological materials

Mutant

MGNA-A169 (ytlI::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/169 NBRP B. subtilis, Japan]

BKE29400 ([[gene|ascR]]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE29400 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CAATGTGCTCCCTCCTGTTT, downstream forward: _UP4_TAACTGAAAAAATAAAAACC

BKK29400 ([[gene|ascR]]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK29400 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CAATGTGCTCCCTCCTGTTT, downstream forward: _UP4_TAACTGAAAAAATAAAAACC