SubtiBank SubtiBank
Version comparison:

2018-04-29 08:33:032025-05-27 21:34:34

description

similar to rRNA adenosine methyltransferase for modification of 23S rRNA

similar to RNA adenosine methyltransferase

locus

BSU15750

BSU_15750

geneLength

1089

1092

function

rRNA modification

RNA modification

product

rRNA methyltransferase

RNA methyltransferase

outlinks

bsu

BSU15750

BSU_15750

Gene

Coordinates

1,649,286 → 1,650,377

1,649,286 1,650,377

The protein

Protein family

RlmN family (according to Swiss-Prot), SAM enzyme superfamily

[SW|Radical SAM superfamily] (according to UniProt)

Biological materials

Mutant

MGNA-B132 (yloN::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/1131 NBRP B. subtilis, Japan]

1A819 ( ''yloN''::''erm''), [Pubmed|12682299], available at [http://pasture.asc.ohio-state.edu/BGSC/getdetail.cfm?bgscid=1A819&Search=1A819 BGSC]

BKE15750 (Δ[[gene|yloN]]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE15750 BGSC], [Pubmed|28189581], upstream reverse: _UP1_TGTTTTATTAAGTTCTGCCA, downstream forward: _UP4_CAAGACGAGACGAGGTGATG

BKK15750 (Δ[[gene|yloN]]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK15750 BGSC], [Pubmed|28189581], upstream reverse: _UP1_TGTTTTATTAAGTTCTGCCA, downstream forward: _UP4_CAAGACGAGACGAGGTGATG

MGNA-B132 (yloN::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/1131 NBRP B. subtilis, Japan]

1A819 ( ''yloN''::''erm''), [Pubmed|12682299], available at [http://pasture.asc.ohio-state.edu/BGSC/getdetail.cfm?bgscid=1A819&Search=1A819 BGSC]

BKE15750 ([[gene|yloN]]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE15750 BGSC], [Pubmed|28189581], upstream reverse: _UP1_TGTTTTATTAAGTTCTGCCA, downstream forward: _UP4_CAAGACGAGACGAGGTGATG

BKK15750 ([[gene|yloN]]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK15750 BGSC], [Pubmed|28189581], upstream reverse: _UP1_TGTTTTATTAAGTTCTGCCA, downstream forward: _UP4_CAAGACGAGACGAGGTGATG

References

18025251, 18307109, 27496281, 11918677

18025251, 18307109, 27496281, 23752511, 11918677, 21527678

The protein

Catalyzed reaction/ biological activity

methylates C-2 in A2503 in 23S rRNA and A37 in tRNA [pubmed|23752511]

adenosine2503 in 23S rRNA + 2 reduced [2Fe-2S]-[ferredoxin] + 2 S-adenosyl-L-methionine --> 2-methyladenosine2503 in 23S rRNA + 5'-deoxyadenosine + L-methionine + 2 oxidized [2Fe-2S]-[ferredoxin] + S-adenosyl-L-homocysteine (according to UniProt)

adenosine37 in tRNA + 2 reduced [2Fe-2S]-[ferredoxin] + 2 S-adenosyl-L-methionine --> 2-methyladenosine37 in tRNA + 5'-deoxyadenosine + L-methionine + 2 oxidized [2Fe-2S]-[ferredoxin] + S-adenosyl-L-homocysteine (according to UniProt)

The protein

Paralogous protein(s)

[[this]]

The protein

Structure

[PDB|3RF9] (from E. coli, 38% identity) [pubmed|21527678]