SubtiBank SubtiBank
Version comparison:

2017-05-29 11:56:422025-05-30 15:28:44

description

UDP-sugar epimerase, required for extracellular polysaccharide synthesis, this gene is inactive in B. subtilis 168

UDP-N-acetylglucosamine 4,6-dehydratase, required for extracellular polysaccharide synthesis, this gene is inactive in B. subtilis 168

locus

BSU34350

BSU_34350

geneLength

1794

1797

function

biofilm formation

[[category|Biofilm formation]], biosynthesis of N,N'-diacetylbacillosamine

product

unknown

UDP-N-acetylglucosamine 4,6-dehydratase

ec

outlinks

bsu

BSU34350

BSU_34350

Gene

Coordinates

3,526,407 → 3,528,203

3,526,407 3,528,203

The protein

Protein family

polysaccharide synthase family (according to Swiss-Prot)

[SW|Polysaccharide synthase family] (according to UniProt)

The protein

Paralogous protein(s)

SpsM ([[protein|YodU]], [[protein|YpqP]])

[[this]]

Biological materials

Mutant

MGNA-A071 (yveM::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/71 NBRP B. subtilis, Japan]

MGNA-A071 (yveM::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/71 NBRP B. subtilis, Japan]

BKE34350 ([[gene|epsC]]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE34350 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATTGACAGTCTTCTCCGGT, downstream forward: _UP4_AGCGTTCATTAGGGGGAGTG

BKK34350 ([[gene|epsC]]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK34350 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATTGACAGTCTTCTCCGGT, downstream forward: _UP4_AGCGTTCATTAGGGGGAGTG

=The EAR [SW|RNA switch]=

20374491, 20230605

The protein

[SW|Cofactors]

NAD+ [pubmed|30222950]

The protein

Structure

[PDB|5BJW] (from Campylobacter jejuni, corresponds to the C-terminal part of EpsC, aa 242 ... 571, 47% identity) [pubmed|29053280]

References

Research papers

27655338, 30222950, 29053280

References

The EAR [SW|RNA switch]

20374491, 20230605