SubtiBank SubtiBank
Version comparison:

Tue Dec 13 2016 11:16:29 GMT+0100 (CET)2025-05-25 23:11:23

title

yabB

trmN6

description

unknown

tRNA methyltransferase

locus

BSU00340

BSU_00340

function

unknown

tRNA modification

product

unknown

tRNA methyltransferase

ec

names

yabB

trmN6

yabB

outlinks

bsu

BSU00340

BSU_00340

aminos

MVSLHDDERLDYLLAEDMKIIQSPTVFAFSLDAVLLSKFAYVPIQKGKIVDLCTGNGIVPLLLSTRSKADILGVEIQERLHDMAVRSVEYNKLDDQIQIIHDDLKNMPEKLGHNRYDVVTCNPPYFKTPKQTEQNMNEHLRIARHEIHCTLEDVISVSSKLLKQGGKAALVHRPGRLLEIFELMKAYQIEPKRVQFVYPKQGKEANTILVEGIKGGRPDLKILPPLFVYDEQNEYTKEIRTILYGDK

[SW|Categories] containing this gene/protein

[SW|proteins of unknown function]

Gene

Coordinates on the chromosome (coding sequence)

42,917 -> 43,660

Expression and Regulation

Operon

''[[protein|darA]]-[[protein|yaaR]]-[[protein|holB]]-[[protein|yaaT]]-[[protein|yabA]]-[[protein|yabB]]-[[protein|yazA]]-[[protein|yabC]]'' [Pubmed|22383849]

proteinLength

247

geneLength

744

Gene

Coordinates

42,917 43,660

The protein

Paralogous protein(s)

[[this]]

The protein

Structure

[PDB|3LPM] (putative methyltransferase from Listeria monocytogenes, 64% identity)

Expression and Regulation

Operons

[[this]]

Expression and Regulation

Other regulations

[[this]]

Biological materials

Mutant

MGNA-B901 (yabB::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/1900 NBRP B. subtilis, Japan]

BKE00340 ([[gene|trmN6]]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE00340 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATCTTCTTATCCTTTCAGT, downstream forward: _UP4_ACAAAAGAAATCAGGACCAT

BKK00340 ([[gene|trmN6]]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK00340 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATCTTCTTATCCTTTCAGT, downstream forward: _UP4_ACAAAAGAAATCAGGACCAT