SubtiBank SubtiBank
Version comparison:

Tue Dec 13 2016 11:16:34 GMT+0100 (CET)2025-05-30 02:40:27

title

yprB

mrfB

description

unknown

metal-dependent exonuclease, part of a novel nucleotide excision repair pathway

locus

BSU22210

BSU_22210

function

unknown

mitomycin C-specific DNA damage repair

product

unknown

metal-dependent exonuclease

ec

names

yprB

mrfB

yprB

outlinks

bsu

BSU22210

BSU_22210

aminos

MSLKGKLQRMKKHMALDEGEQKIEAGKQENHFDDIPFLEEWEAFGMKPFIFEDEYCLIREVEYPLSHRHGLYSFSELEEVITLWNQSGLSHTLSAKGYNKNNLFFFDTETTGLGGGAGNTIFLLGHARVYEDRVTVKQHLLPKPGNEVALYQSFLSEVDITSLVTYNGKAFDWPQVKTRHTLIRDRLPKLPEFGHFDLLHGARRLWKHKMDRVSLGTVEKEELGIRRLEDTPGYLAPMLYFHFIKAQEPDLLKGVLHHNEMDVLSLISLYIHMSKKILSESHAPKEHSEAYAMAKWFMAHKETDQAIKQLERLIEKSFEDQDSARLDLSLLYKKQNRLEEAVPLWEKLSRSQNQKCRYAAVIELAKYFEHKKKEFGKALQVAEQSLSDAACLSEKETEKLHVRIARLKRKYSS

[SW|Categories] containing this gene/protein

[SW|proteins of unknown function]

Gene

Coordinates on the chromosome (coding sequence)

2,333,324 -> 2,334,565

The protein

Protein family

Aspartase subfamily (according to Swiss-Prot)

proteinLength

413

geneLength

1242

Gene

Coordinates

2,333,324 2,334,565

Gene

Phenotypes of a mutant

sensitive to mitomycin C [pubmed|30379365]

The protein

Paralogous protein(s)

[[this]]

The protein

[SW|Cofactors]

Mg2+ [pubmed|30379365]

Expression and Regulation

Operons

[[this]]

Expression and Regulation

Other regulations

[[this]]

Biological materials

Mutant

MGNA-A413 (yprB::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/413 NBRP B. subtilis, Japan]

BKE22210 ([[gene|mrfB]]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE22210 BGSC], [Pubmed|28189581], upstream reverse: _UP1_TAATGACATATCCGGCCTCC, downstream forward: _UP4_TAAATATTCCCCGGGAAAGC

BKK22210 ([[gene|mrfB]]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK22210 BGSC], [Pubmed|28189581], upstream reverse: _UP1_TAATGACATATCCGGCCTCC, downstream forward: _UP4_TAAATATTCCCCGGGAAAGC

References

Research papers

30379365