SubtiBank SubtiBank
Version comparison:

2018-02-13T11:36:59.000Z2025-05-29 19:50:07

locus

BSU29300

BSU_29300

geneLength

690

693

names

ribR

ytnK

ribR

ytnK

rbfK

outlinks

bsu

BSU29300

BSU_29300

Gene

Coordinates

3,000,985 → 3,001,677

3,000,985 3,001,677

The protein

Catalyzed reaction/ biological activity

synthesis of FMNH2 [Pubmed|26494285]

binds the [SW|FMN riboswitch] [Pubmed|26494285]

prevents transcription termination of the ''[[gene|ribD]]-[[gene|ribE]]-[[gene|ribA]]-[[gene|ribH]]-[[gene|ribT]]'' operon even in the presence of FMN or FMNH2 [Pubmed|26494285]

prevents sequestration of the ribosome binding site of the ''[[gene|ribU]]'' mRNA even in the presence of FMN or FMNH2 [Pubmed|26494285]

synthesis of FMNH2 [Pubmed|26494285]

binds the [SW|FMN riboswitch] [Pubmed|26494285]

prevents transcription termination of the ''[[gene|ribD]]-[[gene|ribE]]-[[gene|ribA]]-[[gene|ribH]]-[[gene|ribT]]'' operon even in the presence of FMN or FMNH2 [Pubmed|26494285]

prevents sequestration of the ribosome binding site of the ''[[gene|ribU]]'' mRNA even in the presence of FMN or FMNH2 [Pubmed|26494285]

ATP + riboflavin --> ADP + FMN + H+ (according to UniProt)

The protein

Paralogous protein(s)

[[protein|RibC]] (42%)

[[this]]

Biological materials

Mutant

MGNA-A154 (ribR::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/154 NBRP B. subtilis, Japan]

BKE29300 (Δ[[gene|ribR]]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE29300 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CAAAAAAGTCAGCCTCCTCT, downstream forward: _UP4_GGATAGGGAAAGGAGCGGAA

BKK29300 (Δ[[gene|ribR]]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK29300 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CAAAAAAGTCAGCCTCCTCT, downstream forward: _UP4_GGATAGGGAAAGGAGCGGAA

MGNA-A154 (ribR::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/154 NBRP B. subtilis, Japan]

BKE29300 ([[gene|ribR]]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE29300 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CAAAAAAGTCAGCCTCCTCT, downstream forward: _UP4_GGATAGGGAAAGGAGCGGAA

BKK29300 ([[gene|ribR]]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK29300 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CAAAAAAGTCAGCCTCCTCT, downstream forward: _UP4_GGATAGGGAAAGGAGCGGAA

The protein

Protein family

RibR family (single member, according to UniProt)