SubtiBank SubtiBank
Version comparison:

Mon Aug 31 2015 13:52:26 GMT+0200 (CEST)2025-05-16 08:22:37

description

similar to transcriptional regulator (MocR/ GabR family)

similar to transcriptional regulator ([SW|MocR/ GabR family])

locus

BSU03560

BSU_03560

ec

outlinks

bsu

BSU03560

BSU_03560

syns

[SW|Categories] containing this gene/protein

[SW|transcription factors and their control]

The protein

Protein family

[[MocR/ GabR family]] [Pubmed|22020104]

[SW|MocR/ GabR family] [Pubmed|22020104]

[SW|class-I pyridoxal-phosphate-dependent aminotransferase family] (according to UniProt)

The protein

Paralogous protein(s)

none, but there are 7 members of the [[MocR/ GabR family]] in ''B. subtilis

[[this]]

The protein

[SW|Domains]

N-terminal DNA-binding helix-turn-helix motif; C-terminal domain is homologous to PLP-binding large domain of aminotransferases.

N-terminal DNA-binding helix-turn-helix motif; C-terminal domain is homologous to PLP-binding large domain of aminotransferases.

[SW|HTH gntR-type domain] (aa 1-69) (according to UniProt)

References

11756427, 22020104

11756427, 22020104, 24127574

proteinLength

444

geneLength

1335

Gene

Coordinates

406,131 407,465

The protein

[SW|Cofactors]

PLP

The protein

Structure

[PDB|4MGR] ([[protein|GabR]], 27% identity) [pubmed|24127574]

Expression and Regulation

Operons

[[this]]

Expression and Regulation

Other regulations

[[this]]

Biological materials

Mutant

BKE03560 ([[gene|ycxD]]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE03560 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATGCCTTCTCCCCCTGTTT, downstream forward: _UP4_GGTGTCAAGCTGTTGATGAG

BKK03560 ([[gene|ycxD]]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK03560 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATGCCTTCTCCCCCTGTTT, downstream forward: _UP4_GGTGTCAAGCTGTTGATGAG