SubtiBank SubtiBank
Version comparison:

Thu Oct 01 2015 13:51:44 GMT+0200 (CEST)2025-05-14 20:10:29

locus

BSU04660

BSU_04660

ec

outlinks

subtilist

gene_detail+BG12092

gene_detail BG12092

outlinks

bsu

BSU04660

BSU_04660

syns

ydcE, mazF

[SW|Categories] containing this gene/protein

[SW|RNAses], [SW|toxins, antitoxins and immunity against toxins]

The protein

Protein family

pemK family (according to Swiss-Prot)

PemK/MazF family (single member, according to UniProt)

The protein

Effectors of protein activity

the activity is inhibited by the interaction with [SW|NdoAI] [Pubmed|17416361]

the activity is inhibited by the interaction with [[protein|NdoAI]] [Pubmed|17416361]

The protein

Structure

[PDB|1NE8] [Pubmed|14517982]

[PDB|4MDX] (NdoA-RNA) [Pubmed|24120662]

[PDB|4ME7] ([[protein|NdoA]]-[SW|NdoAI] complex) [Pubmed|24120662]

[PDB|1NE8] [Pubmed|14517982]

[PDB|4MDX] (NdoA-RNA) [Pubmed|24120662]

[PDB|4ME7] ([[protein|NdoA]]-[[protein|NdoAI]] complex) [Pubmed|24120662]

The protein

[SW|Interactions]

[[protein|NdoA]](2)-[SW|NdoAI](2)-[[protein|NdoA]](2) [Pubmed|24120662,17416361]

the active protein forms dimers [Pubmed|24120662]

Expression and Regulation

Operon

''[SW|ndoAI]-[[protein|ndoA]]'' [Pubmed|15882409]

References

15882409, 17416361, 20525796, 21763692, 21897862, 23378533, 14517982, 24120662, 24489751, 23736285

15882409, 17416361, 20525796, 21763692, 21897862, 23378533, 14517982, 24120662, 24489751, 23736285, 28017721

proteinLength

116

geneLength

351

Gene

Coordinates

518,943 519,293

The protein

Paralogous protein(s)

[[this]]

Expression and Regulation

Operons

[[this]]

Expression and Regulation

Other regulations

[[this]]

Biological materials

Mutant

BKE04660 ([[gene|ndoA]]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE04660 BGSC], [Pubmed|28189581], upstream reverse: _UP1_ATCGCCGCGTTTCACAATCA, downstream forward: _UP4_TAGACATATTTGCAGGTTGC

BKK04660 ([[gene|ndoA]]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK04660 BGSC], [Pubmed|28189581], upstream reverse: _UP1_ATCGCCGCGTTTCACAATCA, downstream forward: _UP4_TAGACATATTTGCAGGTTGC