Tue Dec 13 2016 11:16:35 GMT+0100 (CET)2025-05-11 07:00:33
description
putative 2-5 RNA-ligase
similar to 2´-CPDase
locus
BSU29960
BSU_29960
function
RNA metabolism
nucleotide metabolism
product
putative 2-5 RNA-ligase
putative 2´-CPDase
ec
outlinks
bsu
BSU29960
BSU_29960
aminos
MPDIRPHYFIGVPIPEGIANPIYQAAKNEPILTFQKWVHPLDYHITLIFLGAADETQIKKLEGSLAEIASEIDPFSIKFGKIDVFGDRRKPRVLHLEPKKNKTLDRLREHTKQAVLQAGFQVEKRPYHPHMTLARKWTGEDGFPAHVPFESGEVSMMAERFSLFQIHLNQSPKYEEIFKFQLS
[SW|Categories] containing this gene/protein
[SW|poorly characterized/ putative enzymes]
Gene
Coordinates on the chromosome (coding sequence)
3,065,751 -> 3,066,302
The protein
Protein family
UPF0097 family (according to Swiss-Prot)
2H phosphoesterase superfamily (with [[protein|YjcG]], according to UniProt) [pubmed|31422053]
The protein
Paralogous protein(s)
[[protein|YjcG]]
[[this]]
References
proteinLength
183
geneLength
552
Gene
Coordinates
3,065,751 3,066,302
The protein
Catalyzed reaction/ biological activity
H2O + RNA(n)-2',3'-cyclic phosphate --> H+ + RNA(n)-2'- phosphate (according to UniProt)
The protein
Structure
[PDB|1IUH] (from Thermus thermophilus, 24% identity) [pubmed|12798681]
Expression and Regulation
Operons
[[this]]
Expression and Regulation
Other regulations
[[this]]
Biological materials
Mutant
MGNA-A431 (ytlP::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/431 NBRP B. subtilis, Japan]
BKE29960 ([[gene|ytlP]]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE29960 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATCCGTCTGACACTCCCTT, downstream forward: _UP4_TAATTCATTGCGGAGTGGAG
BKK29960 ([[gene|ytlP]]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK29960 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATCCGTCTGACACTCCCTT, downstream forward: _UP4_TAATTCATTGCGGAGTGGAG