SubtiBank SubtiBank
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Tue Dec 13 2016 11:16:30 GMT+0100 (CET)2025-05-29 22:33:16

description

general stress protein, required for protection against paraquat stress

putative pyridoxamine 5'-phosphate oxidase , general stress protein, required for protection against paraquat stress

locus

BSU04220

BSU_04220

product

unknown

putative pyridoxamine 5'-phosphate oxidase

ec

outlinks

bsu

BSU04220

BSU_04220

aminos

MNQQDIKQKVLDVLDHHKVGSLATVQKGKPHSRYMTFFHDGLTIYTPTSKETHKAEEIENNPNVHILLGYDCEGFGDAYVEVAGKAKINNSAELKDKIWSSKLERWFDGKDDPNLVILEIEPEDIRLMNAGEKTPVSLEL

[SW|Categories] containing this gene/protein

[SW|general stress proteins (controlled by SigB)], [SW|resistance against oxidative and electrophile stress]

Gene

Coordinates on the chromosome (coding sequence)

473,803 -> 474,225

Expression and Regulation

Operon

''[[protein|ydaD]]-[[protein|ydaE]]-[[protein|ydaF]]-[[protein|ydaG]]'' [Pubmed|10220166]

''[[protein|ydaG]]'' [Pubmed|10220166]

Expression and Regulation

[SW|Sigma factor]

''[[protein|ydaD]]'': [[protein|SigB]] [Pubmed|10220166]

''[[protein|ydaG]]'': [[protein|SigB]] [Pubmed|10220166]

Expression and Regulation

Regulation

induced under stress conditions ([[protein|SigB]]) [Pubmed|10220166]

strongly induced in response to glucose starvation in M9 medium [Pubmed|23033921]

proteinLength

140

geneLength

423

Gene

Coordinates

473,803 474,225

The protein

Paralogous protein(s)

[[this]]

The protein

Structure

[PDB|3DB0] (from Listeria innocua, 43% identity)

Expression and Regulation

Operons

[[this]]

Expression and Regulation

Other regulations

[[this]]

Biological materials

Mutant

MGNA-C102 (ydaG::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/2100 NBRP B. subtilis, Japan]

BKE04220 ([[gene|ydaG]]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE04220 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATCTCGAATCACTCCTTTT, downstream forward: _UP4_TAAAAAATTTGTGTTTTCAG

BKK04220 ([[gene|ydaG]]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK04220 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATCTCGAATCACTCCTTTT, downstream forward: _UP4_TAAAAAATTTGTGTTTTCAG