Tue Dec 13 2016 11:16:30 GMT+0100 (CET)2025-05-29 22:33:16
description
general stress protein, required for protection against paraquat stress
putative pyridoxamine 5'-phosphate oxidase , general stress protein, required for protection against paraquat stress
locus
BSU04220
BSU_04220
product
unknown
putative pyridoxamine 5'-phosphate oxidase
ec
outlinks
bsu
BSU04220
BSU_04220
aminos
MNQQDIKQKVLDVLDHHKVGSLATVQKGKPHSRYMTFFHDGLTIYTPTSKETHKAEEIENNPNVHILLGYDCEGFGDAYVEVAGKAKINNSAELKDKIWSSKLERWFDGKDDPNLVILEIEPEDIRLMNAGEKTPVSLEL
[SW|Categories] containing this gene/protein
[SW|general stress proteins (controlled by SigB)], [SW|resistance against oxidative and electrophile stress]
Gene
Coordinates on the chromosome (coding sequence)
473,803 -> 474,225
Expression and Regulation
Operon
''[[protein|ydaD]]-[[protein|ydaE]]-[[protein|ydaF]]-[[protein|ydaG]]'' [Pubmed|10220166]
''[[protein|ydaG]]'' [Pubmed|10220166]
Expression and Regulation
[SW|Sigma factor]
''[[protein|ydaD]]'': [[protein|SigB]] [Pubmed|10220166]
''[[protein|ydaG]]'': [[protein|SigB]] [Pubmed|10220166]
Expression and Regulation
Regulation
induced under stress conditions ([[protein|SigB]]) [Pubmed|10220166]
strongly induced in response to glucose starvation in M9 medium [Pubmed|23033921]
proteinLength
140
geneLength
423
Gene
Coordinates
473,803 474,225
The protein
Paralogous protein(s)
[[this]]
The protein
Structure
[PDB|3DB0] (from Listeria innocua, 43% identity)
Expression and Regulation
Operons
[[this]]
Expression and Regulation
Other regulations
[[this]]
Biological materials
Mutant
MGNA-C102 (ydaG::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/2100 NBRP B. subtilis, Japan]
BKE04220 ([[gene|ydaG]]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE04220 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATCTCGAATCACTCCTTTT, downstream forward: _UP4_TAAAAAATTTGTGTTTTCAG
BKK04220 ([[gene|ydaG]]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK04220 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATCTCGAATCACTCCTTTT, downstream forward: _UP4_TAAAAAATTTGTGTTTTCAG