Tue Dec 13 2016 11:16:37 GMT+0100 (CET)2025-05-31 22:03:00
description
ABC transporter (resistance), ATP-binding protein, export of YydF
[SW|ABC transporter], ATP-binding protein, export of the mature [[protein|YydF]] epipeptide
locus
BSU40150
BSU_40150
function
control of LiaR-LiaS activity
control of [[protein|LiaR]]-[[protein|LiaS]] activity
product
ABC transporter (resistance), ATP-binding protein
[SW|ABC transporter], ATP-binding protein
ec
outlinks
bsu
BSU40150
BSU_40150
aminos
MNIANYTLKVKGKTLLQDTDLHFSSGKINHVVGKNGVGKSQLAKDFLLNNSKRIGRDIRQNVSLISSSSNIPNDVSKDFLLHFLSKKFDAKMIDKIAYLLNLDNIDGKVLIKNLSDGQKQKLKLLSFLLEDKNIIVLDEITNSLDKKTVIEIHGFLNKYIQENPEKIIINITHDLSDLKAIEGDYYIFNHQEIQQYHSVDKLIEVYINE
[SW|Categories] containing this gene/protein
[SW|ABC transporters], [SW|transcription factors and their control], [SW|membrane proteins]
Gene
Coordinates on the chromosome (coding sequence)
4,124,963 -> 4,125,592
The protein
[SW|Localization]
membrane associated (via [[protein|YydJ]]-[[protein|YydH]]) [Pubmed|10092453]
membrane associated (via [[protein|YydJ]]) [Pubmed|10092453]
The protein
[SW|Interactions]
[[protein|YydI]]-([[protein|YydJ]]-[[protein|YydH]]) [Pubmed|10092453]
Expression and Regulation
Operon
''[[protein|yydF]]-[[protein|yydG]]-[[protein|yydH]]-[[protein|yydI]]-[[protein|yydJ]]'' [Pubmed|17921301]
Expression and Regulation
[SW|Sigma factor]
[[protein|SigA]] [Pubmed|17921301]
Expression and Regulation
Regulation
activated after transition to stationary phase([[protein|AbrB]]) [Pubmed|17921301]
repressed by [[protein|Rok]] [Pubmed|15743949]
Expression and Regulation
Regulatory mechanism
[[protein|AbrB]]: transcription repression [Pubmed|17921301]
[[protein|Rok]]: transcription repression [Pubmed|15743949]
Expression and Regulation
Additional information
the amount of the mRNA is substantially decreased upon depletion of [[Rny|RNase Y]] [PubMed|21815947]
References
Original publications
proteinLength
209
geneLength
630
Gene
Coordinates
4,124,963 4,125,592
The protein
Protein family
[SW|ABC transporter superfamily] (according to UniProt)
The protein
Paralogous protein(s)
[[this]]
The protein
[SW|Domains]
[SW|ABC transporter domain] (aa 1-207) (according to UniProt)
The protein
Structure
[PDB|4HLU] (aa 7- 175, Thermotoga maritima EcfA, 32% identity) [pubmed|23359690]
Expression and Regulation
Operons
[[this]]
Expression and Regulation
Other regulations
[[this]]
Biological materials
Mutant
MGNA-B808 (yydI::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/1807 NBRP B. subtilis, Japan]
BKE40150 ([[gene|yydI]]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE40150 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATATACATACTCCTAGGAA, downstream forward: _UP4_TAATAAAACAGTGGGGGCTT
BKK40150 ([[gene|yydI]]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK40150 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATATACATACTCCTAGGAA, downstream forward: _UP4_TAATAAAACAGTGGGGGCTT