SubtiBank SubtiBank
Version comparison:

Tue Dec 13 2016 11:16:31 GMT+0100 (CET)2025-05-14 19:58:47

description

member of the WalR regulon

member of the [[regulon|WalR regulon]]

locus

BSU06250

BSU_06250

function

may be involved in cell wall metabolism (WalR regulon)

may be involved in cell wall metabolism ([[regulon|WalR regulon]])

ec

outlinks

bsu

BSU06250

BSU_06250

aminos

MLKKVILAAFILVGSTLGAFSFSSDASAKHVNGNITWYNGVGKKGSSGKKLGHWDCATKIGFDVPRNGTKIRAYAKAKPKKVITVYKNDVGRMPNAVLDVSPKAFKALGYPLSKGKVAGHYSY

[SW|Categories] containing this gene/protein

[SW|cell wall/ other]

Gene

Coordinates on the chromosome (coding sequence)

679,390 -> 679,761

Expression and Regulation

Operon

''ydjM'' (according to [http://dbtbs.hgc.jp/COG/prom/ydjM.html DBTBS])

Expression and Regulation

Regulation

activated by [[protein|WalR]] [Pubmed|17581128]

activated under conditions of phosphate starvation ([[protein|PhoP]]) [Pubmed|20059685]

Expression and Regulation

Regulatory mechanism

[[protein|WalR]]: transcription activation [Pubmed|17581128]

[[protein|PhoP]]: transcription activation [Pubmed|20059685]

Expression and Regulation

Additional information

the terminator is [[protein|NusA]]-dependent [ http://www.nature.com/articles/nmicrobiol20157 Reference]

proteinLength

123

geneLength

372

Gene

Coordinates

679,390 679,761

The protein

Paralogous protein(s)

[[this]]

Expression and Regulation

Operons

[[this]]

Expression and Regulation

Other regulations

[[this]]

Biological materials

Mutant

MGNA-C220 (ydjM::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/2218 NBRP B. subtilis, Japan]

BKE06250 ([[gene|ydjM]]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE06250 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATTTCGTCCCCCTGTTTGT, downstream forward: _UP4_TAATGTACATATATAATCTG

BKK06250 ([[gene|ydjM]]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK06250 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATTTCGTCCCCCTGTTTGT, downstream forward: _UP4_TAATGTACATATATAATCTG