Tue Dec 13 2016 11:16:31 GMT+0100 (CET)2025-05-14 19:58:47
description
member of the WalR regulon
member of the [[regulon|WalR regulon]]
locus
BSU06250
BSU_06250
function
may be involved in cell wall metabolism (WalR regulon)
may be involved in cell wall metabolism ([[regulon|WalR regulon]])
ec
outlinks
bsu
BSU06250
BSU_06250
aminos
MLKKVILAAFILVGSTLGAFSFSSDASAKHVNGNITWYNGVGKKGSSGKKLGHWDCATKIGFDVPRNGTKIRAYAKAKPKKVITVYKNDVGRMPNAVLDVSPKAFKALGYPLSKGKVAGHYSY
[SW|Categories] containing this gene/protein
[SW|cell wall/ other]
Gene
Coordinates on the chromosome (coding sequence)
679,390 -> 679,761
Expression and Regulation
Operon
''ydjM'' (according to [http://dbtbs.hgc.jp/COG/prom/ydjM.html DBTBS])
Expression and Regulation
Regulation
activated by [[protein|WalR]] [Pubmed|17581128]
activated under conditions of phosphate starvation ([[protein|PhoP]]) [Pubmed|20059685]
Expression and Regulation
Regulatory mechanism
[[protein|WalR]]: transcription activation [Pubmed|17581128]
[[protein|PhoP]]: transcription activation [Pubmed|20059685]
Expression and Regulation
Additional information
the terminator is [[protein|NusA]]-dependent [ http://www.nature.com/articles/nmicrobiol20157 Reference]
proteinLength
123
geneLength
372
Gene
Coordinates
679,390 679,761
The protein
Paralogous protein(s)
[[this]]
Expression and Regulation
Operons
[[this]]
Expression and Regulation
Other regulations
[[this]]
Biological materials
Mutant
MGNA-C220 (ydjM::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/2218 NBRP B. subtilis, Japan]
BKE06250 ([[gene|ydjM]]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE06250 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATTTCGTCCCCCTGTTTGT, downstream forward: _UP4_TAATGTACATATATAATCTG
BKK06250 ([[gene|ydjM]]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK06250 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATTTCGTCCCCCTGTTTGT, downstream forward: _UP4_TAATGTACATATATAATCTG