SubtiBank SubtiBank
Version comparison:

Mon Oct 03 2016 18:39:55 GMT+0200 (CEST)2025-03-19 08:57:44

ec

[SW|Categories] containing this gene/protein

[SW|protein secretion], [SW|essential genes], [SW|ncRNA], [SW|household RNA]

Gene

Coordinates on the chromosome (coding sequence)

26,533 -> 26,635

The protein

Catalyzed reaction/ biological activity

=== Extended information on the RNA===

The protein

[SW|Interactions]

[[protein|Scr]]-[[protein|Ffh]] in the [SW|signal recognition particle] [Pubmed|26344568]

[[protein|Scr]]-[[23S rRNA]] [Pubmed|26344568]

Expression and Regulation

Operon

''[[protein|yaaJ]]-[[protein|scr]], [[protein|scr]]

Expression and Regulation

[SW|Sigma factor]

[[protein|SigA]] (both promoters)

Labs working on this gene/RNA

[SW|David Bechhofer], Mount Sinai School, New York, USA [http://www.mountsinai.org/Research/Centers Laboratories and Programs/Bechhofer Laboratory?citype=Physician&ciid=Bechhofer David H 1255565 Homepage]

References

Reviews

25212246

25212246, 27890920

References

Original publications

9346318, 2468993, 17576666, 1372600, 7506707, 1383945, 7538759, 10224127, 9677377, 8662730, 10222262, 25270875, 25402410, 26344568, 26883633

9346318, 2468993, 17576666, 1372600, 7506707, 1383945, 7538759, 10224127, 9677377, 8662730, 10222262, 25270875, 25402410, 26883633, 26344568

Gene

Coordinates

26,533 → 26,635

RNA

Structure

[PDB|4UE4] (complex [[protein|Ffh]]-[[protein|Scr]] RNA) [Pubmed|26344568]

The protein

Paralogous protein(s)

[[this]]

Expression and Regulation

Operons

[[this]]

Expression and Regulation

Other regulations

[[this]]

Expression and Regulation

additional information

the mature 5' end of RNA is generated by [[protein|Rnc|RNase III]]-mediated cleavage at 38 nts [pubmed|26883633]

the mature 3' end of RNA is generated by [[protein|Rny|RNase Y]]-mediated cleavage at 320 nts, and further trimming to 308 nts [pubmed|25402410]

labs

[SW|David Bechhofer], Mount Sinai School, New York, USA