2017-11-28 08:00:162025-05-23 16:47:09
locus
BSU09210
BSU_09210
geneLength
906
909
product
putative pseudouridylate synthase
putative [SW|sporulation]-specific pseudouridylate synthase
outlinks
bsu
BSU09210
BSU_09210
Gene
Coordinates
995,624 → 996,532
995,624 996,532
The protein
Catalyzed reaction/ biological activity
RNA uridine = RNA pseudouridine (according to Swiss-Prot)
uridine in RNA --> ψ-uridine in RNA (according to UniProt)
The protein
Protein family
S4 RNA-binding domain (according to Swiss-Prot)
[SW|S4 RNA-binding domain] superfamily (according to http://www.ebi.ac.uk/interpro/entry/IPR036986 Interpro)
pseudouridine synthase RluA family (with [[protein|YjbO]] and [[protein|YlyB]], according to UniProt)
The protein
Paralogous protein(s)
[[protein|YjbO]], [[protein|YlyB]]
[[this]]
Biological materials
Mutant
MGNA-A666 (yhcT::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/666 NBRP B. subtilis, Japan]
BKE09210 (Δ[[gene|yhcT]]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE09210 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATGTTAAATGGCTCCTTTT, downstream forward: _UP4_TGAAGAAAAGCCGCAGGCAC
BKK09210 (Δ[[gene|yhcT]]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK09210 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATGTTAAATGGCTCCTTTT, downstream forward: _UP4_TGAAGAAAAGCCGCAGGCAC
MGNA-A666 (yhcT::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/666 NBRP B. subtilis, Japan]
BKE09210 ([[gene|yhcT]]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE09210 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATGTTAAATGGCTCCTTTT, downstream forward: _UP4_TGAAGAAAAGCCGCAGGCAC
BKK09210 ([[gene|yhcT]]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK09210 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATGTTAAATGGCTCCTTTT, downstream forward: _UP4_TGAAGAAAAGCCGCAGGCAC
The protein
[SW|Domains]
[SW|S4 RNA-binding domain] (aa 19-90) (according to UniProt)
The protein
Structure
[PDB|1V9F] (RluD from E. coli, 36% identical) [pubmed|15078091]
References
Research papers