SubtiBank SubtiBank
Version comparison:

2017-12-29 12:33:292025-05-12 09:54:13

locus

BSU09620

BSU_09620

geneLength

729

732

ec

outlinks

bsu

BSU09620

BSU_09620

Gene

Coordinates

1,037,688 → 1,038,419

1,037,688 1,038,419

The protein

Paralogous protein(s)

[[protein|GlpQ]], [[protein|YqiK]]

[[this]]

Biological materials

Mutant

MGNA-B487 (yhdW::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/1486 NBRP B. subtilis, Japan]

BKE09620 (Δ[[gene|yhdW]]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE09620 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CAAGCTAAGTCAGCTCCTCG, downstream forward: _UP4_GATTTCATCATAAAGGATGG

BKK09620 (Δ[[gene|yhdW]]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK09620 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CAAGCTAAGTCAGCTCCTCG, downstream forward: _UP4_GATTTCATCATAAAGGATGG

MGNA-B487 (yhdW::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/1486 NBRP B. subtilis, Japan]

BKE09620 ([[gene|yhdW]]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE09620 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CAAGCTAAGTCAGCTCCTCG, downstream forward: _UP4_GATTTCATCATAAAGGATGG

BKK09620 ([[gene|yhdW]]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK09620 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CAAGCTAAGTCAGCTCCTCG, downstream forward: _UP4_GATTTCATCATAAAGGATGG

The protein

Catalyzed reaction/ biological activity

sn-glycero-3-phosphoester + H2O --> alcohol + H+ + sn-glycerol 3-phosphate (according to UniProt)

The protein

Protein family

glycerophosphoryl diester phosphodiesterase family (with [[protein|GlpQ]], according to UniProt)

The protein

[SW|Domains]

GP-PDE domain (aa 1-238) (according to UniProt)

The protein

Structure

[PDB|5T9B] ([[protein|GlpQ]], 38% identity) [pubmed|27780866]

References

Research papers

27780866