SubtiBank SubtiBank
Version comparison:

Fri Jan 29 2016 17:04:02 GMT+0100 (CET)2025-05-10 11:15:07

locus

BSU37070

BSU_37070

ec

outlinks

bsu

BSU37070

BSU_37070

[SW|Categories] containing this gene/protein

[SW|translation]

Gene

Coordinates on the chromosome (coding sequence)

3,803,081 -> 3,803,281

The protein

Protein family

Type A subfamily (according to Swiss-Prot)

bacterial [SW|ribosomal protein] bL31 family (with [[protein|RpmEB]], according to UniProt)

The protein

Paralogous protein(s)

[[protein|YtiA]]

[[this]]

The protein

Additional information

Under conditions of zinc starvation, RpmE is replaced by its paralog [[protein|YtiA]], that does not require zinc [Pubmed|15049826]

Under conditions of zinc starvation, RpmE is replaced by its paralog [[protein|RpmEB]], that does not require zinc [Pubmed|15049826]

Expression and Regulation

Operon

''rpmE'' [Pubmed|9353933]

Expression and Regulation

Regulation

[[protein|RelA]] dependent downregulation (Class I) during stringent response [Pubmed|11948165]

References

17163968, 15049826, 19648245, 19653700, 20208344, 23002217, 25661487

17163968, 15049826, 19648245, 19653700, 20208344, 23002217, 25661487, 25903689, 32448158

proteinLength

66

geneLength

201

Gene

Coordinates

3,803,081 3,803,281

The protein

Structure

[PDB|3J9W] (the [SW|ribosome]) [Pubmed|25903689]

Expression and Regulation

Operons

[[this]]

Expression and Regulation

Other regulations

[[this]]

Biological materials

Mutant

BKE37070 ([[gene|rpmE]]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE37070 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATTGTATCCATCTCCTTCC, downstream forward: _UP4_TAATAATAGATTTCTCAACA

BKK37070 ([[gene|rpmE]]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK37070 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATTGTATCCATCTCCTTCC, downstream forward: _UP4_TAATAATAGATTTCTCAACA