SubtiBank SubtiBank
ycgA [2019-06-07 08:32:18]
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ycgA [2019-06-07 08:32:18]

unknown
locus
BSU03020
pI
8.24
mw
41.37 kDa
protein length
477 aa Sequence Blast
gene length
1434 bp Sequence Blast
function
unknown
product
unknown
essential
no
synonyms
Outlinks
KEGGBsubCycSubtiListUniProtExpression Browser

Genomic Context

      

categories

  • [category|SW 6|Groups of genes] → [category|SW 6.2|Membrane proteins]
  • [category|SW 6|Groups of genes] → [category|SW 6.7|Proteins of unknown function]

    • Gene

    Coordinates
    325,339 → 326,772

    The protein

    [SW|Localization]

  • cell membrane (according to Swiss-Prot)

    • Expression and Regulation

    Operons

    genes
    [gene|F71FBBE4436FBC4221C3631794C73D306CD3FC7E|ycgA]
    description
    [pubmed|22383849]

    regulatory mechanism

  • [protein|90ACE0DECA58D3C1A55E135120F7A0C1C920571C|CodY]: repression, [Pubmed|12618455], in [regulon|90ACE0DECA58D3C1A55E135120F7A0C1C920571C|CodY regulon]

    • regulation

  • repressed during growth in the presence of branched chain amino acids ([protein|90ACE0DECA58D3C1A55E135120F7A0C1C920571C|CodY]) [Pubmed|12618455]

    • additional information

  • the mRNA is very stable (half-life > 15 min) [http://www.ncbi.nlm.nih.gov/sites/entrez/12884008 PubMed]
    • view in new tab

    Biological materials

    Mutant

  • MGNA-B987 (ycgA::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/1986 NBRP B. subtilis, Japan]
  • BKE03020 (Δ[gene|F71FBBE4436FBC4221C3631794C73D306CD3FC7E|ycgA]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE03020 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATATTTCGATCCATCCCCT, downstream forward: _UP4_TAACGATTGCTGCCCGCCGG
  • BKK03020 (Δ[gene|F71FBBE4436FBC4221C3631794C73D306CD3FC7E|ycgA]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK03020 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATATTTCGATCCATCCCCT, downstream forward: _UP4_TAACGATTGCTGCCCGCCGG

    • References

  • 12884008,12618455,12618455