SubtiBank SubtiBank
yxkH [2019-06-12 11:03:42]
You are currently viewing an outdated version of SubtiWiki. Please use the newest version!

yxkH [2019-06-12 11:03:42]

similar to polysaccharide deacetylase
locus
BSU38800
pI
7.80
mw
31.26 kDa
protein length
279 aa Sequence Blast
gene length
840 bp Sequence Blast
function
unknown
product
unknown
essential
no
synonyms
Outlinks
KEGGBsubCycSubtiListUniProtExpression Browser

Genomic Context

      

categories

  • [category|SW 6|Groups of genes] → [category|SW 6.2|Membrane proteins]
  • [category|SW 6|Groups of genes] → [category|SW 6.7|Proteins of unknown function]

    • Gene

    Coordinates
    3,983,187 → 3,984,026

    The protein

    Protein family

  • [SW|polysaccharide deacetylase family] (according to UniProt)

    • Structure

  • [PDB|1HD5] (from B. cereus, 30% identity)

    • Expression and Regulation

    Operons

    genes
    [gene|F66D9DFE457E2ADADD72DE7B99CD2FEE35C6462F|yxkH]
    description
    [Pubmed|10746760]

    sigma factors

  • [protein|7024E4162A6D827069F882FDEACA696EBC05DD40|SigD]: sigma factor, [Pubmed|26577401], in [regulon|7024E4162A6D827069F882FDEACA696EBC05DD40|SigD regulon]
    • view in new tab

    Biological materials

    Mutant

  • MGNA-B742 (yxkH::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/1741 NBRP B. subtilis, Japan]
  • BKE38800 (Δ[gene|F66D9DFE457E2ADADD72DE7B99CD2FEE35C6462F|yxkH]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE38800 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATCGTTCTCCTGCTTTCTG, downstream forward: _UP4_TCAATGAAATAAAAAAAGGC
  • BKK38800 (Δ[gene|F66D9DFE457E2ADADD72DE7B99CD2FEE35C6462F|yxkH]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK38800 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATCGTTCTCCTGCTTTCTG, downstream forward: _UP4_TCAATGAAATAAAAAAAGGC

    • References

  • 10746760,26577401