yrdR [2019-06-19 10:20:03]

unknown

locus: BSU26620

pI: 9.97

mw: 35.76 kDa

protein length: 321 aa

gene length: 966 bp

function: unknown

product: unknown

essential: no

synonyms

Genomic Context

categories

• [category|SW 6|Groups of genes] → [category|SW 6.2|Membrane proteins]
• [category|SW 6|Groups of genes] → [category|SW 6.7|Proteins of unknown function]

Gene

Coordinates: 2,720,687 → 2,721,652

The protein

Protein family

• eamA transporter family (according to Swiss-Prot)

[SW|Localization]

• cell membrane (according to UniProt)

Expression and Regulation

Operons

• genes: [gene|F47A2C0A7478485BDAF90FA873F4B1D1F7C74004|yrdR]-[gene|4E42C126368C8995971518F33933D39FFD52BF64|yrzO]
  description: [pubmed|22383849]

  sigma factors

  • [protein|CFF318EE6CACDEE763FBF96A2ABB46E944679AAA|SigF]: sigma factor, [pubmed|30782632], in [regulon|CFF318EE6CACDEE763FBF96A2ABB46E944679AAA|SigF regulon]
  • [protein|5F24258282F3166B7696B9E9ABC1706E4D06C944|SigG]: sigma factor, [pubmed|30782632], in [regulon|5F24258282F3166B7696B9E9ABC1706E4D06C944|SigG regulon]

Biological materials

Mutant

• MGNA-A860 (yrdR::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/860 NBRP B. subtilis, Japan]
• BKE26620 (Δ[gene|F47A2C0A7478485BDAF90FA873F4B1D1F7C74004|yrdR]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE26620 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATTGAATTCCCCTCCTTTT, downstream forward: _UP4_ACTTAGACAGTGGGGGATTT
• BKK26620 (Δ[gene|F47A2C0A7478485BDAF90FA873F4B1D1F7C74004|yrdR]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK26620 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATTGAATTCCCCTCCTTTT, downstream forward: _UP4_ACTTAGACAGTGGGGGATTT