ywbD [Tue Dec 13 2016 11:16:37 GMT+0100 (CET)]

unknown

locus: BSU38360

pI: 9.18

mw: 44.00 kDa

function: unknown

product: unknown

essential: no

synonyms: ipa-19d

Genomic Context

categories

• [category|SW 3|Information processing] → [category|SW 3.3|Protein synthesis, modification and degradation] → [category|SW 3.3.1|Translation] → [category|SW 3.3.1.3|rRNA modification and maturation/ based on similarity]

[SW|Categories] containing this gene/protein

• [SW|proteins of unknown function]

This gene is a member of the following [SW|regulons]

• [SW|SinR regulon]

Gene

Coordinates on the chromosome (coding sequence): 3,935,824 -> 3,937,014

The protein

Catalyzed reaction/ biological activity

• S-adenosyl-L-methionine + rRNA = S-adenosyl-L-homocysteine + rRNA containing C(5)-methylcytosine (according to Swiss-Prot)

Protein family

• RlmI family (according to Swiss-Prot)

[SW|Localization]

• cytoplasm (according to Swiss-Prot)

Expression and Regulation

Regulation

• repressed by [protein|search|SinR] [Pubmed|16430695]

Regulatory mechanism

• [protein|search|SinR]: transcription repression [Pubmed|16430695]

Biological materials

lacZ fusion

• GP1614 ''amyE::p(ywbD-lacZ cat)'', constructed with pGP2150 based on [protein|search|pAC5], available in [SW| Jörg Stülke]'s lab

References

• 16430695