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thiW [2018-05-04 14:35:30]
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thiW [2018-05-04 14:35:30]

thiamine [SW|ABC transporter] (ATP-binding protein)
locus
BSU13220
pI
5.71
mw
54.48 kDa
protein length
490 aa Sequence Blast
gene length
1470 bp Sequence Blast
function
thiamine uptake
product
thiamine [SW|ABC transporter] (ATP-binding protein)
essential
no
synonyms
ykoD
Outlinks
KEGGBsubCycSubtiListUniProtExpression Browser

Genomic Context

      

categories

  • [category|SW 1|Cellular processes] → [category|SW 1.2|Transporters] → [category|SW 1.2.3|ECF transporter] → [category|SW 1.2.3.3|Class I ECF transporter]
  • [category|SW 2|Metabolism] → [category|SW 2.6|Additional metabolic pathways] → [category|SW 2.6.2|Biosynthesis of cofactors] → [category|SW 2.6.2.3|Biosynthesis/ acquisition of thiamine]
  • [category|SW 6|Groups of genes] → [category|SW 6.2|Membrane proteins]

    • Gene

    Coordinates
    1,388,809 → 1,390,452

    The protein

    Protein family

  • [SW|ABC transporter] family (according to Swiss-Prot)

    • Structure

  • [PDB|4HUQ] (34% identity)

    • [SW|Localization]

  • membrane associated (via [protein|9AF27E4CE34B5C4036840A27D93B13213E3324DD|ThiV]-[protein|236095EDE02EC9EA7768D9D30CED2345D3B7A1A9|ThiX]) [Pubmed|16291685]

    • Expression and Regulation

    Operons

    genes
    [gene|57A953B5D71F3FD8269EAF2366B8E2C7A8C79483|thiU]-[gene|9AF27E4CE34B5C4036840A27D93B13213E3324DD|thiV]-[gene|EF69891D9CF0CE57367B38FB3C69DDE1B689FCB7|thiW]-[gene|236095EDE02EC9EA7768D9D30CED2345D3B7A1A9|thiX]
    description
    [Pubmed|16291685]

    regulatory mechanism

  • [protein|E195900D971AEE4A790D4579BE5E5A15B81010B8|Thi-box]: [SW|RNA switch], via [SW|RNA switch], in [regulon|E195900D971AEE4A790D4579BE5E5A15B81010B8|Thi-box regulon]

    • regulation

  • repressed by thiamine ([protein|search|Thi-box]) [Pubmed|12376536]
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    Biological materials

    Mutant

  • MGNA-A755 (ykoD::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/755 NBRP B. subtilis, Japan]
  • BKE13220 (Δ[gene|EF69891D9CF0CE57367B38FB3C69DDE1B689FCB7|thiW]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE13220 BGSC], [Pubmed|28189581], upstream reverse: _UP1_GAGCTGCTCAACCGTCAGAA, downstream forward: _UP4_ATGGCATTTCAAGAGGAGGT
  • BKK13220 (Δ[gene|EF69891D9CF0CE57367B38FB3C69DDE1B689FCB7|thiW]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK13220 BGSC], [Pubmed|28189581], upstream reverse: _UP1_GAGCTGCTCAACCGTCAGAA, downstream forward: _UP4_ATGGCATTTCAAGAGGAGGT

    • References

  • 10092453,16291685,12376536