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yfhM [2019-06-24 09:50:27]
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yfhM [2019-06-24 09:50:27]

general stress protein, similar to epoxide hydrolase
locus
BSU08590
pI
6.06
mw
32.61 kDa
protein length
286 aa Sequence Blast
gene length
861 bp Sequence Blast
function
survival of ethanol stress
product
unknown
essential
no
synonyms
Outlinks
KEGGBsubCycSubtiListUniProtExpression Browser

Genomic Context

      

categories

  • [category|SW 4|Lifestyles] → [category|SW 4.3|Coping with stress] → [category|SW 4.3.1|General stress proteins (controlled by SigB)]
  • [category|SW 4|Lifestyles] → [category|SW 4.3|Coping with stress] → [category|SW 4.3.2|Cell envelope stress proteins (controlled by SigM, V, W, X, Y)]
  • [category|SW 6|Groups of genes] → [category|SW 6.6|Poorly characterized/ putative enzymes]

    • Gene

    Coordinates
    929,725 → 930,585

    The protein

    Protein family

  • [SW|AB hydrolase superfamily] (according to UniProt)
  • Epoxide hydrolase family (single member, according to UniProt)

    • Structure

  • [PDB|4NZZ] (from ''Bacillus Megaterium'', 33% identity)

    • Additional information

  • subject to Clp-dependent proteolysis upon glucose starvation [PubMed|17981983]

    • Expression and Regulation

    Operons

    genes
    [gene|893103B8E6163A4B403CA136A92BA3EA66DC3802|yfhK]-[gene|2B7F65B145005A8ADD2A278E3EA5A52DF162C837|yfhL]-[gene|ED478E2C37F2AD8BF06251B52511287EDB91C9EE|yfhM]
    description
    [Pubmed|10913081]

    sigma factors

  • [protein|580011DE5DC40EC9E7E0512791D328FAA010DCB8|SigB]: sigma factor, [Pubmed|10913081,15805528], in [regulon|580011DE5DC40EC9E7E0512791D328FAA010DCB8|SigB regulon]
  • [protein|3D974DD2967C7F8FD4E3C2AF42617B8AE9F0296D|SigW]: sigma factor, [Pubmed|9987136], in [regulon|3D974DD2967C7F8FD4E3C2AF42617B8AE9F0296D|SigW regulon]

    • regulation

  • induced by stress ([protein|580011DE5DC40EC9E7E0512791D328FAA010DCB8|SigB]) [Pubmed|10913081,15805528]
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    Biological materials

    Mutant

  • MGNA-C318 (yfhM::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/2316 NBRP B. subtilis, Japan]
  • BKE08590 (Δ[gene|ED478E2C37F2AD8BF06251B52511287EDB91C9EE|yfhM]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE08590 BGSC], [Pubmed|28189581], upstream reverse: _UP1_TCCGTTCGTATTGACAAACT, downstream forward: _UP4_TAAGCTAAAATTTCTCTCCA
  • BKK08590 (Δ[gene|ED478E2C37F2AD8BF06251B52511287EDB91C9EE|yfhM]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK08590 BGSC], [Pubmed|28189581], upstream reverse: _UP1_TCCGTTCGTATTGACAAACT, downstream forward: _UP4_TAAGCTAAAATTTCTCTCCA

    • References

  • 9987136,10913081,15805528