SubtiBank SubtiBank
ycbK [Tue Dec 13 2016 11:16:30 GMT+0100 (CET)]
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ycbK [Tue Dec 13 2016 11:16:30 GMT+0100 (CET)]

similar to efflux system
locus
BSU02540
pI
9.57
mw
33.00 kDa
function
unknown
product
unknown
essential
no
synonyms
Outlinks
KEGGBsubCycSubtiListUniProtExpression Browser

Genomic Context

      

categories

  • [category|SW 1|Cellular processes] → [category|SW 1.2|Transporters] → [category|SW 1.2.4|Transporters/ other] → [category|SW 1.2.4.12|Other transporters]
  • [category|SW 6|Groups of genes] → [category|SW 6.2|Membrane proteins]

    • [SW|Categories] containing this gene/protein

  • [SW|transporters/ other], [SW|membrane proteins]

    • This gene is a member of the following [SW|regulons]

  • [SW|T-box], [SW|TRAP regulon]

    • Gene

    Coordinates on the chromosome (coding sequence)
    277,342 -> 278,280

    The protein

    Protein family

  • DUF6 domain (according to Swiss-Prot)

    • [SW|Localization]

  • cell membrane (according to Swiss-Prot)

    • Expression and Regulation

    Operon

  • ''[protein|search|rtpA]-[protein|search|ycbK]'' [Pubmed|10706627]

    • [SW|Sigma factor]

  • [protein|search|SigA] [Pubmed|10706627]

    • Regulation

  • ''[protein|search|rtpA]'': induced by tryptophan limitation ([protein|search|T-box] in the mRNA leader) [Pubmed|10706627]
  • ''[protein|search|ycbK]'': induced by tryptophan limitation ([protein|search|MtrB] in the mRNA leader) [Pubmed|16879415]

    • Regulatory mechanism

  • [protein|search|T-box]: transcription termination/ antitermination [Pubmed|10706627]
  • [protein|search|MtrB]: control of translation initiation (access of the ribosome to the Shine-Dalgarno sequence) [Pubmed|16879415]

    • References

  • 19258532,10706627,16879415