YkkC riboswitch [2017-12-29 12:13:52]

guanidine-binding riboswitch

locus: BSU_misc_RNA_16

pI: 0.00

mw: 0.00 kDa

function: control of [gene|5FD89F65E481CDC33B10A58C12C3168B929917ED|ykkC]-[gene|5001019AD87FEF7D7A920D570C1053D476F7F20C|ykkD] expression

synonyms: BSU_misc_RNA_16

Genomic Context

Gene

Coordinates: 1,376,328 → 1,376,439

RNA

RNA family

• [SW|ykkC riboswitch]

Effectors of RNA activity

• binding of guanidine causes transcriptional antitermination [Pubmed|27989440]

The protein

Structure

• [PDB|5U3G] (the [SW|riboswitch] from Dickeya dadantii, bound to guanidinium) [pubmed|28096518]

References

Reviews

• 28212758,28060483

Original publications

• 15096624,21317561,27120414,27989440,28096518,28017522