yjkB [2019-04-24 13:33:42]

similar to amino acid [SW|ABC transporter ](ATP-binding protein)

locus: BSU12250

pI: 5.56

mw: 27.67 kDa

protein length: 250 aa

gene length: 753 bp

function: unknown

product: [SW|ABC transporter ](ATP-binding protein)

essential: no

synonyms

Genomic Context

categories

• [category|SW 1|Cellular processes] → [category|SW 1.2|Transporters] → [category|SW 1.2.1|ABC transporters] → [category|SW 1.2.1.4|Unknown ABC transporters]
• [category|SW 6|Groups of genes] → [category|SW 6.2|Membrane proteins]

Gene

Coordinates: 1,295,748 → 1,296,500

The protein

Protein family

• [SW|ABC transporter] domain (according to Swiss-Prot)

Structure

• [PDB|4YMS] (from Caldanaerobacter subterraneus, 35% identity) [pubmed|25848002]

[SW|Localization]

• associated to the membrane (via [protein|6C432E77C5A6F9955DDF4F7BE3FFD55C30BB812A|YjkA]) [Pubmed|10092453]

Expression and Regulation

Operons

• genes: [gene|E93AE502A575BFB185A5D782B2F40AD53B27093E|yjkB]-[gene|6C432E77C5A6F9955DDF4F7BE3FFD55C30BB812A|yjkA]
  description: [pubmed|22383849]

Biological materials

Mutant

• MGNA-A362 (yjkB::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/362 NBRP B. subtilis, Japan]
• BKE12250 (Δ[gene|E93AE502A575BFB185A5D782B2F40AD53B27093E|yjkB]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE12250 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATTACAATAATCACCTTTC, downstream forward: _UP4_TTTTTGAAGGGAGGCACTCG
• BKK12250 (Δ[gene|E93AE502A575BFB185A5D782B2F40AD53B27093E|yjkB]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK12250 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATTACAATAATCACCTTTC, downstream forward: _UP4_TTTTTGAAGGGAGGCACTCG

References

• 10092453,25848002