ydzF

[SW|MarR family|MarR/DUF24 family] transcription regulator

locus: BSU_05270

pI: 9.33

mw: 12.44 kDa

protein length: 109 aa

gene length: 330 bp

function: unknown

product: [SW|MarR family|MarR/DUF24 family] transcription regulator

essential: no

synonyms

Genomic Context

categories

• [category|SW 6|Groups of genes] → [category|SW 6.6|Poorly characterized/ putative enzymes]

Gene

Coordinates: 574,106 → 574,435

The protein

Protein family

• [SW|MarR family|MarR/DUF24 family]

Paralogous protein(s)

• [protein|51B1913B59C1876CCED4A88414797B3A22BE4E3C|YdeP], [protein|73AFDF65BE89C0E2CC59AF2AF64C29BD99D785DF|YodB], [protein|91085DA5E71B88E533D2E1D1BFB53E908116C6AA|HypR], [protein|C57DDC9710CB557179B062F9C5D786DB02A3B5FC|YkvN], [protein|D9A187961CFB9496A6712E9E48AAD384357A3E1C|HxlR], [protein|1E74F0557FF9ECB404B6544831F4E0A162473423|YtcD]

[SW|Domains]

• [SW|HTH hxlR-type domain] (aa 10-109) (according to UniProt)

Structure

• [PDB|4A5M] ([protein|91085DA5E71B88E533D2E1D1BFB53E908116C6AA|HypR], 45% identity) [pubmed|22238377]

Expression and Regulation

Operons

• genes: [gene|E757C4B329A99E3D0C70C77437DF4DDA300CA5E7|ydzF]-[gene|3874C566F1C71F985C86726458B8544F115A6396|ydeN]
  description: [Pubmed|22383849]

Biological materials

Mutant

• MGNA-C166 (ydzF::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/2164 NBRP B. subtilis, Japan]
• BKE05270 (Δ[gene|E757C4B329A99E3D0C70C77437DF4DDA300CA5E7|ydzF]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE05270 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATTGTAATCAAACCTCCTT, downstream forward: _UP4_TAAAGCTACTTACAAAAAAG
• BKK05270 (Δ[gene|E757C4B329A99E3D0C70C77437DF4DDA300CA5E7|ydzF]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK05270 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATTGTAATCAAACCTCCTT, downstream forward: _UP4_TAAAGCTACTTACAAAAAAG

References

Research papers

• 22238377