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yqfD
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yqfD

[protein|3CB24D493B3282278B7DC61CE3C793DFA815F9E2|SigE]-dependent sporulation gene, similar to UDP-glucose 4-epimerase
locus
BSU_25350
pI
10.00
mw
45.57 kDa
protein length
398 aa Sequence Blast
gene length
1197 bp Sequence Blast
function
sporulation
product
unknown
essential
no
synonyms
Outlinks
KEGGBsubCycSubtiListUniProtExpression Browser

Genomic Context

      

categories

  • [category|SW 4|Lifestyles] → [category|SW 4.2|Sporulation] → [category|SW 4.2.1|Sporulation proteins] → [category|SW 4.2.1.4|Sporulation proteins/ other]

    • Gene

    Coordinates
    2,615,452 → 2,616,648

    Phenotypes of a mutant

  • defect in sporulation [Pubmed|14523133]; some reduction in [protein|5F24258282F3166B7696B9E9ABC1706E4D06C944|SigG] activity and production of small spores [Pubmed|26735940]

    • The protein

    [SW|Localization]

  • polar (Septum) [Pubmed|16479537]

    • Expression and Regulation

    Operons

    genes
    [gene|41CC88CC3AE4FDDA909CCEF2DED16B554341D81E|yqfC]-[gene|E5F5528DA775DE3EE2DD1EC931CDC7E3781E018C|yqfD]
    description
    [Pubmed|12662922]

    sigma factors

  • [protein|3CB24D493B3282278B7DC61CE3C793DFA815F9E2|SigE]: sigma factor, [Pubmed|12662922], in [regulon|3CB24D493B3282278B7DC61CE3C793DFA815F9E2|SigE regulon]

    • regulatory mechanism

  • [protein|90DCE4F286D2C151D8BDBF0E024E6BBEC94E2397|SpoIIID]: repression, [Pubmed|15383836], in [regulon|90DCE4F286D2C151D8BDBF0E024E6BBEC94E2397|SpoIIID regulon]

    • regulation

  • expressed early during sporulation in the mother cell ([protein|search|SigE], [SW|SpoIIID]) [Pubmed|12662922,15383836]
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    Biological materials

    Mutant

  • MGNA-C444 (yqfD::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/2442 NBRP B. subtilis, Japan]
  • BKE25350 (Δ[gene|E5F5528DA775DE3EE2DD1EC931CDC7E3781E018C|yqfD]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE25350 BGSC], [Pubmed|28189581], upstream reverse: _UP1_TTTCACAACATTTCCCCCTC, downstream forward: _UP4_CCTATTGTCAGGGAGACTGA
  • BKK25350 (Δ[gene|E5F5528DA775DE3EE2DD1EC931CDC7E3781E018C|yqfD]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK25350 BGSC], [Pubmed|28189581], upstream reverse: _UP1_TTTCACAACATTTCCCCCTC, downstream forward: _UP4_CCTATTGTCAGGGAGACTGA

    • References

  • 14523133,16479537,12662922,15383836,26735940