SubtiBank SubtiBank
ylmA [2019-09-02 12:54:22]
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ylmA [2019-09-02 12:54:22]

similar to [SW|ABC transporter] (ATP-binding protein)
locus
BSU_15340
pI
5.13
mw
29.58 kDa
protein length
264 aa Sequence Blast
gene length
795 bp Sequence Blast
function
unknown
product
unknown
essential
no
synonyms
Outlinks
KEGGBsubCycSubtiListUniProtExpression Browser

Genomic Context

      

Gene

Coordinates
1,606,560 → 1,607,354

The protein

Protein family

  • [SW|ABC transporter superfamily] (according to UniProt)

    • Structure

  • [PDB|2IHY] (from Staphylococcus aureus, 42% identity)

    • additional information

  • belongs to the 100 [SW|most abundant proteins] [PubMed|15378759]

    • Expression and Regulation

    Operons

    genes
    [gene|E12006960D9C75EBD4CD79A84B80BE51A9CC79D2|ylmA]
    description
    [pubmed|22383849]

    regulatory mechanism

  • [protein|90ACE0DECA58D3C1A55E135120F7A0C1C920571C|CodY]: repression, [Pubmed|18083814], in [regulon|90ACE0DECA58D3C1A55E135120F7A0C1C920571C|CodY regulon]
    • view in new tab

    Biological materials

    Mutant

  • MGNA-B123 (ylmA::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/1122 NBRP B. subtilis, Japan]
  • BKE15340 (Δ[gene|E12006960D9C75EBD4CD79A84B80BE51A9CC79D2|ylmA]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE15340 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATCGTGGTCCTCCTCTTTA, downstream forward: _UP4_ACGAATGCCTGACAAATATA
  • BKK15340 (Δ[gene|E12006960D9C75EBD4CD79A84B80BE51A9CC79D2|ylmA]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK15340 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATCGTGGTCCTCCTCTTTA, downstream forward: _UP4_ACGAATGCCTGACAAATATA

    • References

  • 10092453,15378759,18083814