SubtiBank SubtiBank
yvdA [2019-06-17 13:05:10]
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yvdA [2019-06-17 13:05:10]

similar to carbonic anhydrase
locus
BSU34670
pI
6.88
mw
21.57 kDa
protein length
197 aa Sequence Blast
gene length
594 bp Sequence Blast
function
unknown
product
unknown
essential
no
synonyms
Outlinks
KEGGBsubCycSubtiListUniProtExpression Browser

Genomic Context

      

categories

  • [category|SW 6|Groups of genes] → [category|SW 6.6|Poorly characterized/ putative enzymes]

    • Gene

    Coordinates
    3,561,590 → 3,562,183

    The protein

    Paralogous protein(s)

  • [protein|F942C0F4618FACEF35ACA629355BAC288556E7B6|YtiB]
  • [protein|5D96DF2F32050BBCEC3811843398FE84DE88F6DF|YbcF]: (29.4%)

    • Structure

  • [PDB|1G5C] (from Methanobacterium thermoautotrophicum 40% identity) [pubmed|11096105]

    • Expression and Regulation

    Operons

    genes
    [gene|E00889289B07BE78CC0C8E0962A55C3B14871E00|yvdA]-[gene|7028580E25DD6C1D49A14F29DDCC02012F94FED7|yvdB]
    description
    [Pubmed|22383849]
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    Biological materials

    Mutant

  • MGNA-B632 (yvdA::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/1631 NBRP B. subtilis, Japan]
  • BKE34670 (Δ[gene|E00889289B07BE78CC0C8E0962A55C3B14871E00|yvdA]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE34670 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATCTCCCATCCATATGATT, downstream forward: _UP4_TCATAAGGGAGGTTATAACA
  • BKK34670 (Δ[gene|E00889289B07BE78CC0C8E0962A55C3B14871E00|yvdA]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK34670 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATCTCCCATCCATATGATT, downstream forward: _UP4_TCATAAGGGAGGTTATAACA

    • References

  • 22383849,11096105