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ydhD [2019-08-26 09:01:55]
spore coat peptidoglycan hydrolase
product
spore coat glycosylase
Genomic Context
categories
[category|SW 1|Cellular processes] → [category|SW 1.1|Cell envelope and cell division] → [category|SW 1.1.6|Cell wall/ other/ based on similarity][category|SW 4|Lifestyles] → [category|SW 4.2|Sporulation] → [category|SW 4.2.1|Sporulation proteins] → [category|SW 4.2.1.1|Spore coat proteins] → [category|SW 4.2.1.1.8|Not yet assigned]Gene
Coordinates
616,672 → 617,934
The protein
Protein family
[SW|Glycosyl hydrolase 18 family] (according to UniProt)Chitinase class II subfamily (with [protein|77BEC74867422AA225A1F12AD63464656DBDCBE8|YaaH], according to UniProt)Paralogous protein(s)
[protein|77BEC74867422AA225A1F12AD63464656DBDCBE8|YaaH] [SW|Domains]
contains two N-acetylglucosamine-polymer-binding [SW|LysM domain]s at the N-terminus [Pubmed|18430080][SW|glycoside hydrolase family 18 domain ] (aa 120 to 400)Structure
[PDB|3CZ8][SW|Localization]
spore wall (according to Swiss-Prot)Expression and Regulation
Operons
genes
[gene|DFA0BFED9FC2C47ABAA2284514CE2F81BD9EDFEF|ydhD]
description
[Pubmed|11011148]
sigma factors
[protein|3CB24D493B3282278B7DC61CE3C793DFA815F9E2|SigE]: sigma factor, [Pubmed|11011148,15699190], in [regulon|3CB24D493B3282278B7DC61CE3C793DFA815F9E2|SigE regulon]regulation
expressed during sporulation ([protein|search|SigE])view in new tabBiological materials
Mutant
MGNA-C179 (ydhD::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/2177 NBRP B. subtilis, Japan]BKE05710 (Δ[gene|DFA0BFED9FC2C47ABAA2284514CE2F81BD9EDFEF|ydhD]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE05710 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATATTTAACCCCCATTATT, downstream forward: _UP4_TAAAAAAAGACACCAGAGCTBKK05710 (Δ[gene|DFA0BFED9FC2C47ABAA2284514CE2F81BD9EDFEF|ydhD]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK05710 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATATTTAACCCCCATTATT, downstream forward: _UP4_TAAAAAAAGACACCAGAGCTReferences
Reviews
Original publications