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zinT [2019-07-08 08:47:18]
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zinT [2019-07-08 08:47:18]

lipoprotein, similar to zinc-binding protein
locus
BSU26830
pI
5.12
mw
28.72 kDa
protein length
251 aa Sequence Blast
gene length
756 bp Sequence Blast
function
zinc-binding protein
product
zinc uptake
essential
no
synonyms
yrpE
Outlinks
KEGGBsubCycSubtiListUniProtExpression Browser

Genomic Context

      

categories

  • [category|SW 1|Cellular processes] → [category|SW 1.3|Homeostasis] → [category|SW 1.3.2|Trace metal homeostasis (Cu, Zn, Ni, Mn, Mo)] → [category|SW 1.3.2.3|Zinc]
  • [category|SW 6|Groups of genes] → [category|SW 6.12|Secreted proteins]

    • Gene

    Coordinates
    2,741,357 → 2,742,112

    The protein

    Protein family

  • YodA family (according to Swiss-Prot)

    • Structure

  • [PDB|1S7D] (the extracellular domain of E. coli ZinT, 46% identity)

    • [SW|Localization]

  • extracellular (signal peptide) [Pubmed|18957862]

    • Expression and Regulation

    Operons

    genes
    [gene|DC6BA360289AFEC4E098AFDEE9C4E7FA02EA40F8|zinT]
    description
    [Pubmed|22383849]

    sigma factors

  • [protein|360F48D576DE950DF79C1A2677B7A35A8D8CC30C|SigA]: sigma factor, [Pubmed|22383849], in [regulon|360F48D576DE950DF79C1A2677B7A35A8D8CC30C|SigA regulon]

    • regulatory mechanism

  • [protein|A0CD8CCB54AE9F10DE3C876FB47B9877C303862D|Zur]: repression, in the presence of zinc [Pubmed|25649915], in [regulon|A0CD8CCB54AE9F10DE3C876FB47B9877C303862D|Zur regulon]

    • regulation

  • induced by zinc starvation ([protein|search|Zur]) [Pubmed|25649915]
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    Biological materials

    Mutant

  • MGNA-A142 (yrpE::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/142 NBRP B. subtilis, Japan]
  • BKE26830 (Δ[gene|DC6BA360289AFEC4E098AFDEE9C4E7FA02EA40F8|zinT]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE26830 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATTCCAACACTCCTTTTTT, downstream forward: _UP4_TAAATGATGATTACTCTATG
  • BKK26830 (Δ[gene|DC6BA360289AFEC4E098AFDEE9C4E7FA02EA40F8|zinT]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK26830 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATTCCAACACTCCTTTTTT, downstream forward: _UP4_TAAATGATGATTACTCTATG

    • References

  • 12904577,25649915,18957862,27561249,20097857