SubtiBank SubtiBank
yfmO [2019-06-07 09:27:36]
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yfmO [2019-06-07 09:27:36]

similar to multidrug-efflux transporter
locus
BSU07400
pI
9.89
mw
41.29 kDa
protein length
396 aa Sequence Blast
gene length
1191 bp Sequence Blast
function
unknown
product
unknown
essential
no
synonyms
Outlinks
KEGGBsubCycSubtiListUniProtExpression Browser

Genomic Context

      

categories

  • [category|SW 1|Cellular processes] → [category|SW 1.2|Transporters] → [category|SW 1.2.4|Transporters/ other] → [category|SW 1.2.4.12|Other transporters]
  • [category|SW 4|Lifestyles] → [category|SW 4.3|Coping with stress] → [category|SW 4.3.14|Resistance against toxins/ antibiotics/ based on similarity]
  • [category|SW 6|Groups of genes] → [category|SW 6.2|Membrane proteins]

    • Gene

    Coordinates
    812,628 → 813,818

    The protein

    Protein family

  • [SW|major facilitator superfamily] (according to UniProt)

    • [SW|Localization]

  • cell membrane (according to Swiss-Prot)

    • Expression and Regulation

    Operons

    genes
    [gene|36AF02B4EB416ABCA3F0E4C5A4126E777A20C7D1|yfmP]-[gene|D91356CF66ADE0CFA9E95A686DC7355B348C8B5C|yfmO]
    description
    [Pubmed|14663075]

    sigma factors

  • [protein|360F48D576DE950DF79C1A2677B7A35A8D8CC30C|SigA]: sigma factor, [Pubmed|14663075], in [regulon|360F48D576DE950DF79C1A2677B7A35A8D8CC30C|SigA regulon]

    • regulatory mechanism

  • [protein|36AF02B4EB416ABCA3F0E4C5A4126E777A20C7D1|YfmP]: repression, [Pubmed|14663075], in [regulon|36AF02B4EB416ABCA3F0E4C5A4126E777A20C7D1|YfmP regulon]
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    Biological materials

    Mutant

  • MGNA-C237 (yfmO::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/2235 NBRP B. subtilis, Japan]
  • GP1716 (''yfmO''::''cat''), available in [SW|Jörg Stülke]'s lab
  • BKE07400 (Δ[gene|D91356CF66ADE0CFA9E95A686DC7355B348C8B5C|yfmO]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE07400 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATTTGACCTAACCTCCATC, downstream forward: _UP4_TAATAACGAAAGACACTGCG
  • BKK07400 (Δ[gene|D91356CF66ADE0CFA9E95A686DC7355B348C8B5C|yfmO]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK07400 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATTTGACCTAACCTCCATC, downstream forward: _UP4_TAATAACGAAAGACACTGCG

    • References

  • 14663075