SubtiBank SubtiBank
yocR [2018-02-09T23:57:10.000Z]
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yocR [2018-02-09T23:57:10.000Z]

similar to sodium-dependent transporter
locus
BSU19340
pI
9.59
mw
48.17 kDa
protein length
445 aa Sequence Blast
gene length
1335 bp Sequence Blast
function
unknown
product
unknown
essential
no
synonyms
Outlinks
KEGGBsubCycSubtiListUniProtExpression Browser

Genomic Context

      

categories

  • [category|SW 6|Groups of genes] → [category|SW 6.2|Membrane proteins]

    • Gene

    Coordinates
    2,104,934 → 2,106,271

    The protein

    Protein family

  • iron/manganese superoxide dismutase family (according to Swiss-Prot)

    • Paralogous protein(s)

  • [protein|FF16BA2B744E89AADB00F936B9A50A82726312A7|YhdH]

    • Structure

  • [PDB|4US4] (the protein from ''B. halodurans'', 45% identity, 77% similarity) [Pubmed|25282149]

    • [SW|Localization]

  • membrane associated [Pubmed|18763711]

    • Expression and Regulation

    Operons

    genes
    [gene|D5A30C841A142B49C50A38936802D0F60485DD7C|yocR]
    description
    [Pubmed|22383849]
    view in new tab

    Biological materials

    Mutant

  • MGNA-B419 (yocR::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/1418 NBRP B. subtilis, Japan]
  • BKE19340 (Δ[gene|D5A30C841A142B49C50A38936802D0F60485DD7C|yocR]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE19340 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CACCGTATCACTCCTATTTG, downstream forward: _UP4_TAACACACGAAGCCCCCGAG
  • BKK19340 (Δ[gene|D5A30C841A142B49C50A38936802D0F60485DD7C|yocR]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK19340 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CACCGTATCACTCCTATTTG, downstream forward: _UP4_TAACACACGAAGCCCCCGAG

    • References

  • 18763711,25282149