SubtiBank SubtiBank
yrrO [2019-07-31 12:06:21]
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yrrO [2019-07-31 12:06:21]

similar to protease
locus
BSU_27340
pI
4.85
mw
47.46 kDa
protein length
422 aa Sequence Blast
gene length
1269 bp Sequence Blast
function
unknown
product
unknown
essential
no
synonyms
Outlinks
KEGGBsubCycSubtiListUniProtExpression Browser

Genomic Context

      

categories

  • [category|SW 3|Information processing] → [category|SW 3.3|Protein synthesis, modification and degradation] → [category|SW 3.3.1|Translation] → [category|SW 3.3.1.8|tRNA modification and maturation]

    • Gene

    Coordinates
    2,792,860 → 2,794,128

    Phenotypes of a mutant

  • 50% reduction in mo5U tRNA levels [pubmed|31358606]

    • The protein

    Protein family

  • peptidase U32 family (with [protein|A3EC327DA14F188E88AF4221B51EE5950F882277|YrrN], according to UniProt)

    • Paralogous protein(s)

  • [protein|A3EC327DA14F188E88AF4221B51EE5950F882277|YrrN]

    • Expression and Regulation

    Operons

    genes
    [gene|CE4F2965077F2A5882432D683520E09B70B9369A|trmR]-[gene|A3EC327DA14F188E88AF4221B51EE5950F882277|yrrN]-[gene|D4046AA4C4ACB6A0A2F2020CA1E659F65CAFE68D|yrrO]-[gene|A659D9894E777D8A99707CB750DF2918AEE06CE9|udk]-[gene|6FBF27C12B4B3DC2CE373E5199357042114471F8|greA]
    description
    [Pubmed|22383849]
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    Biological materials

    Mutant

  • MGNA-A007 (yrrO::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/7 NBRP B. subtilis, Japan]
  • BKE27340 (Δ[gene|D4046AA4C4ACB6A0A2F2020CA1E659F65CAFE68D|yrrO]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE27340 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATAGCTTAACCTCCTTTTG, downstream forward: _UP4_ATGAGAAAGGGGAAGTAACA
  • BKK27340 (Δ[gene|D4046AA4C4ACB6A0A2F2020CA1E659F65CAFE68D|yrrO]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK27340 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATAGCTTAACCTCCTTTTG, downstream forward: _UP4_ATGAGAAAGGGGAAGTAACA

    • References

    Research papers

  • 31358606