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yrbF [2019-11-13 16:07:52]
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yrbF [2019-11-13 16:07:52]

part of the Sec protein translocation machinery
locus
BSU_27700
pI
9.67
mw
9.77 kDa
protein length
89 aa Sequence Blast
gene length
267 bp Sequence Blast
function
protein secretion
product
part of the Sec protein translocation machinery
essential
no
synonyms
Outlinks
KEGGBsubCycSubtiListUniProtExpression Browser

Genomic Context

      

categories

  • [category|SW 3|Information processing] → [category|SW 3.3|Protein synthesis, modification and degradation] → [category|SW 3.3.5|Protein secretion]
  • [category|SW 6|Groups of genes] → [category|SW 6.2|Membrane proteins]

    • Gene

    Coordinates
    2,832,424 → 2,832,690

    The protein

    Protein family

  • YajC family (single member, according to UniProt)

    • [SW|Localization]

  • cell membrane (according to UniProt)

    • Expression and Regulation

    Operons

    genes
    [gene|7EBC90946E7167A3B0212193873855CAE0EFF7D4|ruvA]-[gene|8DFD57B73FE5D49BB547E050182A96CE6E8BFF77|ruvB]-[gene|6CDF1836F5B613A6718308A4A27D713193EA197B|yrzS]-[gene|23174B2A19DEDF2F20858A005D0681D36E15E6E3|queA]-[gene|0383C8214ADE2FF70CFDB953A65648B37A9D3216|tgt]-[gene|D15B74263167DAD3FA9B7384B5AA4897EAD498F2|yrbF]
    description
    [pubmed|22383849]

    regulation

  • the mRNA is processed between [gene|0383C8214ADE2FF70CFDB953A65648B37A9D3216|tgt] and [gene|D15B74263167DAD3FA9B7384B5AA4897EAD498F2|yrbF] by [protein|872CCB5A49C9000BD95E4B0472556D5F60F7D7A4|RNase Y], this requires the [protein|EE52DFA35B935E551871D079A9BE877DB2001A3B|YmcA]-[protein|6C9A092F38739A3759793EF8B496569CD02C2E3F|YlbF]-[protein|EBD15C174A03B7FCDFFE4C5DB5D86E93F1B9CAC4|YaaT] complex [Pubmed|29794222]
    • view in new tab

    genes
    [gene|D15B74263167DAD3FA9B7384B5AA4897EAD498F2|yrbF]
    description
    [Pubmed|22383849]
    view in new tab

    Biological materials

    Mutant

  • BKE27700 (Δ[gene|D15B74263167DAD3FA9B7384B5AA4897EAD498F2|yrbF]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE27700 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATCATTTTCACCCCTTTCT, downstream forward: _UP4_TAACAGCAGGAGCTATACAT
  • BKK27700 (Δ[gene|D15B74263167DAD3FA9B7384B5AA4897EAD498F2|yrbF]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK27700 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATCATTTTCACCCCTTTCT, downstream forward: _UP4_TAACAGCAGGAGCTATACAT

    • References

  • 18763711,29794222