yhdI

similar to transcriptional regulator (MocR/ GabR family)

Locus: BSU_09480

Isoelectric point: 6.80

Molecular weight: 52.60 kDa

Protein length: 469 aa

Gene length: 1410 bp

Function: unknown

Product: unknown

Essential: no

Synonyms

Genomic Context

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Categories containing this gene/protein

• Information processing → Regulation of gene expression → Transcription factors and their control → Transcription factor/ other/ based on similarity

Gene

Coordinates: 1,026,255 → 1,027,664

The protein

Protein family

• class-I pyridoxal-phosphate-dependent aminotransferase family (according to UniProt)
• MocR/ GabR family PubMed

Domains

• N-terminal DNA-binding helix-turn-helix motif; C-terminal domain is homologous to PLP-binding large domain of aminotransferases.
• HTH gntR-type domain (aa 13-81) (according to UniProt)

Cofactors

• PLP

Structure

• 4MGR (GabR, 40% identity) PubMed

Expression and Regulation

Operons

• Genes: yhdI
  Description: PubMed

Biological materials

Mutant

• MGNA-B480 (yhdI::erm), available at the NBRP B. subtilis, Japan
• BKE09480 (ΔyhdI::erm trpC2) available at BGSC, PubMed, upstream reverse: _UP1_CATCTCATGTCTCCTTTGTA, downstream forward: _UP4_TAAATAAAAAACAGGCCCCG
• BKK09480 (ΔyhdI::kan trpC2) available at BGSC, PubMed, upstream reverse: _UP1_CATCTCATGTCTCCTTTGTA, downstream forward: _UP4_TAAATAAAAAACAGGCCCCG

References

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